RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8501
(195 letters)
>gnl|CDD|148600 pfam07086, DUF1352, Protein of unknown function (DUF1352). This
family consists of several hypothetical eukaryotic
proteins of around 190 residues in length. The function
of this family is unknown.
Length = 183
Score = 191 bits (486), Expect = 2e-62
Identities = 75/195 (38%), Positives = 102/195 (52%), Gaps = 15/195 (7%)
Query: 1 MASR-GMYVTGTDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLSADIL 59
MASR G GTDG+DF HR+++ASHYQ S L K+ LK IF H L++ +M AK+ L
Sbjct: 1 MASRGGPRAAGTDGSDFQHRERVASHYQMSALLKSELKKLIFVHLLIWVLMAAKVGVSHL 60
Query: 60 DRLDIFILEIEELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYM 119
L I L +P P WEY W S+ SFLGL S +NNIS + K + I FG
Sbjct: 61 -------LLISHLQVPMPYQWEYPWLLSVFPSFLGLLSFPRNNISYLVKSMISIGLFGIA 113
Query: 120 PILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQGYPYALLWYIFIVLALQVHTFSLYFS 179
P++Y + F D + + + Y+F+V+A+QVH + LY+S
Sbjct: 114 PLIYGAMEMFPDVMELYRHGKAYRFDFGFSAVP-------VMYLFVVVAVQVHAWQLYYS 166
Query: 180 NNLIQCWRLRAAIKK 194
L+ W R A KK
Sbjct: 167 KKLLDAWFTRTAEKK 181
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 32.4 bits (74), Expect = 0.12
Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 36 LKYTIFFHYLLFFVMLAKLSADILDRLDIFILEIEELLIPKPLLWEYIWCFSLLVSFLGL 95
+ F LL F++ F+L I L LL + +VS L L
Sbjct: 15 FPIFLGFGILLVFLLWLLTLLIYFL---GFVLPILLLFQGLRLL--FSLPILFIVSLLLL 69
Query: 96 SSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIED----KEIT- 150
+ K + + I+A +L I ++ F ++T+ IED K
Sbjct: 70 LLLFKGVDALNIFRL--ILALLISILLILDILFYRFFIDFLTIPNALLIEDFNLGKLGFS 127
Query: 151 -MWQGYPYALLWYIFIVLALQVHTFSLYFSNNL 182
+ YP +L+ + ++L + + F +
Sbjct: 128 ALSLLYPEDILFVVDLILLILLLVFYWRLAGLT 160
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 31.6 bits (72), Expect = 0.27
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 86 FSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFW 133
F LLV + K +S +K YV+ ++ P+LYA++ F+
Sbjct: 340 FPLLVL---AAVFNKLTLSVLKGYVFALMWLQSWPLLYAILNSAMTFY 384
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 30.9 bits (71), Expect = 0.29
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 51 LAKLSADILDRLDIFI----LEIEEL 72
L++LS +LDR+D+ + L EEL
Sbjct: 182 LSRLSGPLLDRIDLQVEVPRLSAEEL 207
>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 51 LAKLSADILDRLDIFI----LEIEELLIPKP 77
L KLS LDR+D+ + L EL+ P
Sbjct: 359 LNKLSGPFLDRIDLMVEVPRLSAGELIRQVP 389
>gnl|CDD|233293 TIGR01150, puhA, photosynthetic reaction center, subunit H,
bacterial. This model describes the photosynthetic
reaction center H subunit in non-oxygenic photosynthetic
bacteria. The reaction center is an integral membrane
pigment-protein that carries out light-driven electron
transfer reactions. At the core of reaction center is a
collection light-harvesting cofactors and closely
associated polypeptides. The core protein complex is
made of L, M and H subunits. The common cofactors
include bacterichlorophyll, bacteriopheophytins,
ubiquinone and no-heme ferrous iron. The net result of
electron tranfer reactions is the establishment of
proton electrochemical gradient and production of
reducing equivalents in the form of NADH. Ultimately,
the process results in the reduction of C02 to
carbohydrates(C6H12O6) In non-oxygenic organisms, the
electron donor is an organic acid rather than water.
Much of our current functional understanding of
photosynthesis comes from the structural determination
and spectroscopic studies on the reaction center of
Rhodobacter sphaeroides [Energy metabolism, Electron
transport, Energy metabolism, Photosynthesis].
Length = 252
Score = 27.5 bits (61), Expect = 3.8
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 110 VYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQGYP 156
+ G FG+ + VIY F F + ED +GYP
Sbjct: 1 MVGGALFGHFDLAQLVIYAFWIFLAGLIYYLRR--ED----RREGYP 41
>gnl|CDD|180851 PRK07117, PRK07117, acyl carrier protein; Validated.
Length = 79
Score = 25.8 bits (57), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 51 LAKLSADILDRLDIFILEIEELLIPKPL 78
L L A+ +DR +I I+ +E L + PL
Sbjct: 32 LVDLGANSMDRAEIVIMTLESLSLKIPL 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.144 0.459
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,590,245
Number of extensions: 1042441
Number of successful extensions: 1381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 66
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)