RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8501
         (195 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.98
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 11  TDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLSADILDRLDIFILEIE 70
           TD    +    I+  + +  L    +K ++   YL        L  ++L      +  I 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLD--CRPQDLPREVLTTNPRRLSIIA 334

Query: 71  ELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNIST-----MKKYVYGIVAFGY-MPILYA 124
           E +      W+  W     V+   L++I +++++       +K    +  F     I   
Sbjct: 335 ESIRDGLATWDN-W---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 125 VIYYFHDFWTYITLDPDEDIEDK 147
           ++      W  +       + +K
Sbjct: 391 LLSL---IWFDVIKSDVMVVVNK 410


>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
           pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
           sapiens} PDB: 3k71_A* 3k72_A*
          Length = 1095

 Score = 28.4 bits (62), Expect = 1.9
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 94  GLSSIRKNNISTMKKYVYGIV-AFGYMPILYAVIYYFHDFWTYITLD 139
           G  SI   N +TM  +V  ++  F      ++++ + + F T+ T +
Sbjct: 139 GSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE 185


>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
           c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
           1bhq_1 1bho_1 1idn_1 3qa3_G
          Length = 194

 Score = 27.3 bits (61), Expect = 2.4
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 96  SSIRKNNISTMKKYVYGIV-AFGYMPILYAVIYYFHDFWTYITLD 139
            SI  ++   MK++V  ++        L++++ Y  +F  + T  
Sbjct: 16  GSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFK 60


>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
           {Homo sapiens} SCOP: c.62.1.1
          Length = 198

 Score = 25.9 bits (57), Expect = 7.3
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 96  SSIRKNNISTMKKYVYGIV-AFGYMPILYAVIYYFHDFWTYITLD 139
            SI   N +TM  +V  ++  F      ++++ + + F T+ T +
Sbjct: 20  GSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE 64


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,205,849
Number of extensions: 190130
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 23
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.6 bits)