RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8501
         (195 letters)



>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
           associated antigen-1, LFA-1) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 179

 Score = 24.8 bits (53), Expect = 7.4
 Identities = 7/80 (8%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 96  SSIRKNNISTMKKYVYGIV-AFGYMPILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQG 154
            S++ +    +  ++  ++         +A + +   + T          +D +  +   
Sbjct: 13  MSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHV 72

Query: 155 YPYALLWYIFIVLALQVHTF 174
               LL   F  +       
Sbjct: 73  KHMLLLTNTFGAINYVATEV 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0376    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 805,716
Number of extensions: 38410
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 21
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (24.0 bits)