RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8502
(168 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 48.8 bits (117), Expect = 2e-07
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 118 AVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFD 162
V++R+ ++R TN F++NLAVAD+L + P V D
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPP--WALYYLVGGD 43
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 36.9 bits (85), Expect = 0.003
Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 92 PGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVI 145
P ++ I Y+ +F++GL GN+ +I ++ +++ +T+ +I NLA++D++ +
Sbjct: 95 PSISEYIKIFYIIIFILGLFGNAAIIMILFCK-KIKTITDIYIFNLAISDLIFV 147
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 36.7 bits (85), Expect = 0.003
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 94 VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
+ I+ Y +F GLVGN +VI V+ +++ + +++NLAV+D L+ + LP
Sbjct: 39 NSTILIVVYSTIFFFGLVGNIIVI-YVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLP 93
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 35.7 bits (82), Expect = 0.007
Identities = 18/47 (38%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 99 IIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVI 145
I+ Y+ +F+ GL+GN LVIAV+I R V + ++ N+A++D++++
Sbjct: 32 IVFYILLFIFGLIGNVLVIAVLIVK-RFMFVVDVYLFNIAMSDLMLV 77
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 35.3 bits (82), Expect = 0.009
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 106 FLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVIT 146
+IG+ GN ++I + + ++R+ +Y I +AD+L ++
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41
>gnl|CDD|181598 PRK08965, PRK08965, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 162
Score = 30.9 bits (71), Expect = 0.20
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 83 VPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADM 142
VP P ++ L V L LV +++ +A +I P R + V L +
Sbjct: 49 VPLEGRLRRPLA----LLRLLLVVLYDLVVSNIQVAWLILRPGPRPRPGFVAVPLRLRSD 104
Query: 143 LVITLC 148
L +TL
Sbjct: 105 LALTLL 110
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 31.0 bits (71), Expect = 0.21
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 107 LIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCL 149
L G++ N L+ + ++ P ++N N A+++ ++ T+ L
Sbjct: 5 LFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFL 47
>gnl|CDD|171438 PRK12363, PRK12363, phosphoglycerol transferase I; Provisional.
Length = 703
Score = 27.9 bits (62), Expect = 2.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 93 GVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
G ++ GY+AVF IG++ SL R R R + MLV+T+
Sbjct: 65 GAGVSDFSGYIAVF-IGMILLSLSPLFAFRVRRFRRPRGGGALFAGFVFMLVVTI 118
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 27.5 bits (62), Expect = 3.3
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 98 FIIGYLAVFLIGLVGNSLVIAVVI-RSPRMRNVTNYFIVNLAVADMLVITLCL 149
F I Y F++GL+ N L++ ++I +SP+ ++N A+ ++ L
Sbjct: 1 FSIYYPIFFILGLILNLLLLYLIIFKSPKSLRTYRILLLNTALTQIISCILAF 53
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel
transmembrane region. This family includes the four
transmembrane helices that form the ion channel.
Length = 228
Score = 27.2 bits (61), Expect = 3.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 99 IIGYLAVFLIGLVGNSLVIAVVI-----RSPR 125
+IG VF + + S+ AVV+ RSP
Sbjct: 57 LIGKYLVFTMFVFTASVEYAVVVLNVHHRSPS 88
>gnl|CDD|225394 COG2838, Icd, Monomeric isocitrate dehydrogenase [Energy production
and conversion].
Length = 744
Score = 27.4 bits (61), Expect = 4.7
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 15 LSSRDNYGLNTFLLQQGAE---DMGLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPAL 71
L D GL+ +L + + + DT+ + GN+L D T DL P L
Sbjct: 508 LKDHDTNGLDIQILSPVEAMRYSLERLRRGEDTISVTGNVLRDYLT--------DLFPIL 559
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 27.4 bits (61), Expect = 4.7
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 60 RLTGTLDLLPALTHNLT-LNTTSGVPELLYRHSPGVTIT-FIIGYLAVFLIGLVGNSLVI 117
+ + +LP++ + + L Y I+ +I LA L G V S V
Sbjct: 129 KNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYGRVLYSFVK 188
Query: 118 AVVIRSPRMRN 128
V+ P +R+
Sbjct: 189 --VVNRPGVRS 197
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 256
Score = 27.0 bits (60), Expect = 4.8
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 15 LSSRDNYGLNTFLLQQGAEDMGLIIKT-TDTVEMGGNILPDLNTSGRLTGTLDLLPALTH 73
L S DN G +E++ ++ D V + PD R G+LDLLPA +
Sbjct: 79 LLSTDNLGRP-------SEELNPLLDIIEDVVR---QLAPDGRWRVRHVGSLDLLPAPSA 128
Query: 74 NLTLNTTSGVPELLYRHSPGVTITFIIGY 102
N + G+ + +GY
Sbjct: 129 NRLKEAEEAT-----VGNDGIKVNVAVGY 152
>gnl|CDD|235836 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
Reviewed.
Length = 624
Score = 27.0 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 87 LYRHSPGVTITFIIGYLAVFLIGL 110
L + P TF+IG LA LIG+
Sbjct: 369 LRKKMPVTYATFLIGTLA--LIGI 390
>gnl|CDD|221825 pfam12877, DUF3827, Domain of unknown function (DUF3827). This
family contains the human KIAA1549 protein which has
been found to be fused fused to BRAF gene in many cases
of pilocytic astrocytomas. The fusion is due mainly to a
tandem duplication of 2 Mb at 7q34. Although nothing is
known about the function of KIAA1549 protein, the BRAF
protein is a well characterized oncoprotein. It is a
serine/threonine protein kinase which is implicated in
MAP/ERK signalling, a critical pathway for the
regulation of cell division, differentiation and
secretion.
Length = 684
Score = 27.2 bits (60), Expect = 5.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 77 LNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLV 116
LN T V SP V+I F + + FL G ++L+
Sbjct: 60 LNITISVSTSNAPQSPPVSIVFAVKNGSGFLNGTEVSNLL 99
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 26.9 bits (59), Expect = 6.0
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 57 TSGRLTGTLD-LLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLI 108
G+ + T+D LL + ++ G P L ++ + +IG F +
Sbjct: 114 AGGKSSPTVDPLLNIKSLISSIVPRIGDPVLNMENTFSGILGGLIGLQVGFFL 166
>gnl|CDD|130017 TIGR00942, 2a6301s05, Monovalent Cation (K+ or Na+):Proton
Antiporter-3 (CPA3) subfamily. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 144
Score = 26.3 bits (58), Expect = 6.8
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 86 LLYRHSPG----VTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVAD 141
+ P + IIG++ FL ++ ++ + ++I PR + V+ + D
Sbjct: 26 VTLNLQPARSRLHRWSRIIGFILRFLGDVIKANIDVTLIILRPRRPVNPGFMTVSTDLKD 85
>gnl|CDD|216772 pfam01899, MNHE, Na+/H+ ion antiporter subunit. Subunit of a
Na+/H+ Prokaryotic antiporter complex.
Length = 157
Score = 25.9 bits (58), Expect = 7.9
Identities = 13/73 (17%), Positives = 23/73 (31%)
Query: 75 LTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFI 134
L ++ L FL LV ++ +A ++ P +
Sbjct: 33 LLTLPLVRPFGRPPPLPRVRRPLALLRLLLYFLWDLVKANIDVARLVLRPGLPIRPGIVA 92
Query: 135 VNLAVADMLVITL 147
V L + L +TL
Sbjct: 93 VPLRLRSDLGLTL 105
>gnl|CDD|225413 COG2857, CYT1, Cytochrome c1 [Energy production and conversion].
Length = 250
Score = 26.2 bits (58), Expect = 9.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 81 SGVPELLYRHSPGVTITFIIGYLAVFLI 108
+ PE R G ++ +L VF I
Sbjct: 212 AAEPEKEERKRLGF---KVMIFLVVFTI 236
>gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial
glycerophosphodiester phosphodiesterases. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in a group of
uncharacterized bacterial glycerophosphodiester
phosphodiesterase and similar proteins. They show high
sequence similarity to Escherichia coli
glycerophosphodiester phosphodiesterase, which
catalyzes the degradation of glycerophosphodiesters to
produce sn-glycerol-3-phosphate (G3P) and the
corresponding alcohols.
Length = 229
Score = 26.1 bits (58), Expect = 9.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 64 TLDLLPALTHNLTLNTTSGVPELLYRHS 91
+ D +P + H+ TL +GV LL+
Sbjct: 37 SADGVPVVFHDDTLLRLTGVEGLLHELE 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.410
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,684,639
Number of extensions: 821319
Number of successful extensions: 1249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 56
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (24.9 bits)