RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8502
(168 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 106 bits (267), Expect = 3e-28
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 61 LTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVV 120
+ L + L+ N++ NT+ + + + Y + + +VGN +V+ ++
Sbjct: 1 MDNVLPVDSDLSPNISTNTSEPNQ---FVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWII 57
Query: 121 IRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVH 160
+ RMR VTNYF+VNLA A+ + ++
Sbjct: 58 LAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE 97
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 85.2 bits (211), Expect = 3e-20
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 69 PALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRN 128
A T N L G+ +T + YLAV + GL+GN LV+ V++R +M+
Sbjct: 100 AAEQLKTTRNAYIQ-KYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKT 158
Query: 129 VTNYFIVNLAVADMLVITLCLP 150
TN +I NLA+AD LV L LP
Sbjct: 159 ATNIYIFNLALADTLV-LLTLP 179
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 82.8 bits (204), Expect = 3e-19
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 64 TLDLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRS 123
L + L + G P ++ + +I LA+ ++ ++GN LV V +
Sbjct: 6 ALSYIFCLVFADYKDDDDGAPPIM------GSSVYITVELAIAVLAILGNVLVCWAVWLN 59
Query: 124 PRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHF 161
++NVTNYF+V+LA AD+ V L +P + +
Sbjct: 60 SNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCA 97
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 80.9 bits (200), Expect = 8e-19
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 74 NLTLNTTSGVPELLYRHSPGVTITFIIG--YLAVFLIGLVGNSLVIAVVIRSPRMRNVTN 131
N T S E + ++ + ++G N L + V ++ ++R N
Sbjct: 16 NKTGVVRS-PFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLN 74
Query: 132 YFIVNLAVADMLVITLCLPATLMANIYVHF 161
Y ++NLAVAD+ ++ TL +++ +F
Sbjct: 75 YILLNLAVADLFMVFGGFTTTLYTSLHGYF 104
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 79.0 bits (194), Expect = 6e-18
Identities = 14/77 (18%), Positives = 39/77 (50%)
Query: 74 NLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYF 133
+ + +++ L + + ++ ++ L+ ++GN LV+ + + ++ V NYF
Sbjct: 2 DDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYF 61
Query: 134 IVNLAVADMLVITLCLP 150
+ +LA AD+++ +
Sbjct: 62 LFSLACADLIIGVFSMN 78
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 77.1 bits (189), Expect = 2e-17
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 72 THNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTN 131
+ LN T G + + Y A+ L + GN LV V++ ++ TN
Sbjct: 15 QLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTN 74
Query: 132 YFIVNLAVADMLVITLCLP 150
Y +V+LAVAD+LV TL +P
Sbjct: 75 YLVVSLAVADLLVATLVMP 93
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 75.9 bits (186), Expect = 7e-17
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 78 NTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNL 137
+ V IT LA+ ++ ++GN LV V + ++NVTNYF+V+L
Sbjct: 7 DAMGQPVGAPPIMGSSVYITV---ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSL 63
Query: 138 AVADMLVITLCLPATLMANIYVHF 161
A AD+ V L +P + +
Sbjct: 64 AAADIAVGVLAIPFAITISTGFCA 87
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 74.3 bits (182), Expect = 2e-16
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 90 HSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCL 149
S IT + Y V ++GL GN LV+ V++R +M+ TN +I NLA+AD L T L
Sbjct: 12 PSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTL 70
Query: 150 P 150
P
Sbjct: 71 P 71
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 72.4 bits (177), Expect = 1e-15
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 91 SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
+ + ++ + L+ + N LV+ V ++ V N +IV+L+VAD++V + +P
Sbjct: 4 ASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 72.6 bits (177), Expect = 1e-15
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 78 NTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNL 137
N T + + + + + ++ + ++ N V+ + ++ + YFI NL
Sbjct: 48 NYTGKLNISADKENSIKLTSVV--FILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNL 105
Query: 138 AVADMLVITLCLPATLM 154
A++D+L L+
Sbjct: 106 ALSDLLAGVAYTANLLL 122
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 71.7 bits (175), Expect = 2e-15
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 78 NTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNL 137
+ + ++ + + I + L + GN LVI + + R++ VTNYFI +L
Sbjct: 23 RSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSL 82
Query: 138 AVADMLVITLCLP 150
A AD+++ +P
Sbjct: 83 ACADLVMGLAVVP 95
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 70.3 bits (172), Expect = 7e-15
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
Y +FL G+VGN LVI V+ ++R++T+ + ++L+VAD+L + LP
Sbjct: 55 YSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLP 102
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 70.0 bits (171), Expect = 7e-15
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 102 YLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLV-ITLCLPATLMANIYVH 160
+IG GN +VI + ++ ++ N FI+NLA +D + P ++
Sbjct: 41 IGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKK 100
Query: 161 F 161
+
Sbjct: 101 W 101
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 69.2 bits (169), Expect = 2e-14
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 66 DLLPALTHNLTLNTTSGVPELLYRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPR 125
+T T V + ++ + + ++ GN LVI + + R
Sbjct: 155 QTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIV--FGNVLVITAIAKFER 212
Query: 126 MRNVTNYFIVNLAVADMLVITLCLP 150
++ VTNYFI +LA AD+++ +P
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVP 237
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 63.6 bits (155), Expect = 8e-13
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 91 SPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLP 150
S + V L+ + GN LVIA + + R++ +TN FI +LA AD++V L +P
Sbjct: 7 SQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP 66
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.16
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 27 LLQQGAEDMGLIIKTTDTVEMGGNIL----PDLNTSGR-------LTGTLDLLPAL 71
++ +G E MG ++T EM N+L P++ + L G L +P L
Sbjct: 684 IIAEGIEKMG--VRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPEL 737
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.26
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 5/23 (21%)
Query: 60 RLTGTLDLL-----PALTHNLTL 77
+L +L L PAL T+
Sbjct: 24 KLQASLKLYADDSAPALAIKATM 46
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Length = 108
Score = 28.3 bits (63), Expect = 0.52
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 88 YRHSPGVTITFIIG------YLAVFLIGLVGNSLVIAVVIRSPRMRN 128
+ H V +TF + L + + + V +R
Sbjct: 7 HHHGSAVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEE 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.66
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 37/109 (33%)
Query: 3 HYRLPSEYYHIDLS--SRDNYGLNTFL---LQQG--AEDMGL--------------IIKT 41
HY +P + DL D Y + + L+ E M L I
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 42 TDTVEMGGNILPDL--------------NTSGRLTGTL-DLLPALTHNL 75
+ G+IL L RL + D LP + NL
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.0
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 39/126 (30%)
Query: 30 QGA-----EDMGLIIKT-----TDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLT--- 76
QG E++ + +T D ++ L +L + TLD T L
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-----IRTTLDAEKVFTQGLNILE 217
Query: 77 -LNTTSGVPELLYRHS-----PGVTIT----FII-----GY----LAVFLIGLVGNS--L 115
L S P+ Y S P + + +++ G+ L +L G G+S L
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 116 VIAVVI 121
V AV I
Sbjct: 278 VTAVAI 283
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 421
Score = 28.4 bits (63), Expect = 1.3
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 88 YRHSPGVTITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITL 147
Y P TIT + + +I + + +V R + +T Y + A + L
Sbjct: 358 YDLYPYWTITVLASLGLLIVISSGFSCFLCSVA----RTKCLTPYQLAPGAQLPTFIALL 413
Query: 148 C 148
C
Sbjct: 414 C 414
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte,
photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP}
SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B*
2vjh_B* 1b8d_B*
Length = 177
Score = 26.0 bits (56), Expect = 5.1
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 14/127 (11%)
Query: 36 GLIIKTTDTVEMGGNILPDLNTSGRLTGTLDLLPALTHNLTLNTTSGVPELLYRHSPGVT 95
G+I + + GN + + L +L +++ L S
Sbjct: 58 GMICENPSLISPSGNCYTNRRMAACLRDGEIILRYVSYALLSGDAS-------------- 103
Query: 96 ITFIIGYLAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMA 155
+ + + M+ F+ N A L + L +
Sbjct: 104 VLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTASQKKLSTPQGDCSGLAS 163
Query: 156 NIYVHFD 162
+ +FD
Sbjct: 164 EVGGYFD 170
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 26.0 bits (58), Expect = 7.2
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 86 LLYRHSPGVTITFII 100
LL H + IT
Sbjct: 32 LLTNHDKNLYITVFC 46
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein,
molybdate, tungstate, ligand, unknown function,
transport protein; 1.70A {Methanocaldococcus jannaschii}
Length = 292
Score = 25.4 bits (55), Expect = 9.5
Identities = 8/65 (12%), Positives = 18/65 (27%)
Query: 103 LAVFLIGLVGNSLVIAVVIRSPRMRNVTNYFIVNLAVADMLVITLCLPATLMANIYVHFD 162
A + + N +V+A +S + + + + I P
Sbjct: 75 YADWYVMFARNEIVLAYTDKSKYKDEINSTNWYKILQRPDVKIGFSNPNDDPCGYRTQMV 134
Query: 163 LKSLN 167
L+
Sbjct: 135 LQLAE 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.410
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,565,276
Number of extensions: 149768
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 33
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.6 bits)