RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8502
         (168 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 74  NLTLNTTSGVPELLYRHSPGVTITFIIGYLA-VFLIGLVGNSLVIAVVIRSPRMRNVTNY 132
           N T    S      Y  +     + +  Y+  + ++G   N L + V ++  ++R   NY
Sbjct: 15  NKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNY 74

Query: 133 FIVNLAVADMLVITLCLPATLMANIYVHF 161
            ++NLAVAD+ ++      TL  +++ +F
Sbjct: 75  ILLNLAVADLFMVFGGFTTTLYTSLHGYF 103


>d1gpia_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Phanerochaete chrysosporium,
           Cel7d [TaxId: 5306]}
          Length = 431

 Score = 25.2 bits (55), Expect = 4.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 78  NTTSGVPELLYRHSPGVTITF 98
            TTSGVP  +    P   + F
Sbjct: 395 ATTSGVPSDVESQVPNSQVVF 415


>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
           [TaxId: 51453]}
          Length = 434

 Score = 24.8 bits (54), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 78  NTTSGVPELLYRHSPGVTITF 98
           +T+SGVP  +   SP   +TF
Sbjct: 398 STSSGVPAQVESQSPNAKVTF 418


>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId:
           68825]}
          Length = 435

 Score = 24.8 bits (54), Expect = 7.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 78  NTTSGVPELLYRHSPGVTITF 98
            T SGVP  +   SP   +T+
Sbjct: 402 PTDSGVPSDVESQSPNSYVTY 422


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.410 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,105
Number of extensions: 25480
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 7
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.5 bits)