Query psy8503
Match_columns 421
No_of_seqs 140 out of 203
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:37:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pzd_A Coatomer gamma subunit; 100.0 3.1E-38 1.1E-42 310.5 12.0 170 241-420 2-259 (322)
2 1r4x_A Gamma1-COP, coatomer ga 100.0 1E-31 3.5E-36 259.8 12.4 116 300-420 9-212 (275)
3 2vgl_A Adaptor protein complex 99.9 8.8E-26 3E-30 233.8 9.7 189 4-225 380-590 (621)
4 2vgl_B AP-2 complex subunit be 99.9 1.1E-24 3.9E-29 221.4 14.0 188 3-224 329-532 (591)
5 1w63_A Adapter-related protein 99.9 9.8E-24 3.4E-28 216.7 13.6 190 2-224 359-577 (618)
6 1oyz_A Hypothetical protein YI 98.1 0.00012 4.2E-09 65.9 16.2 177 2-223 32-220 (280)
7 1w63_A Adapter-related protein 97.9 2E-05 6.8E-10 81.2 7.8 194 1-224 187-414 (618)
8 3ltj_A Alpharep-4; protein eng 97.8 0.00013 4.4E-09 62.5 10.2 167 2-223 23-197 (201)
9 3ltm_A Alpha-REP4; protein eng 97.8 0.00015 5E-09 62.7 10.5 32 2-33 28-59 (211)
10 2vgl_B AP-2 complex subunit be 97.5 0.00056 1.9E-08 69.8 12.0 76 2-77 95-172 (591)
11 1oyz_A Hypothetical protein YI 97.4 0.0014 4.7E-08 59.0 12.0 176 2-222 63-248 (280)
12 4hxt_A De novo protein OR329; 97.3 0.0023 7.8E-08 55.2 11.6 60 2-61 11-77 (252)
13 1u6g_C TIP120 protein, CAND1; 97.2 0.0024 8.1E-08 69.5 13.0 183 7-222 65-282 (1230)
14 2vgl_A Adaptor protein complex 97.2 0.0036 1.2E-07 65.1 13.6 131 3-166 121-271 (621)
15 1pzd_A Coatomer gamma subunit; 97.2 7.6E-05 2.6E-09 73.8 1.0 39 70-110 272-310 (322)
16 4fdd_A Transportin-1; heat rep 97.1 0.0068 2.3E-07 63.4 14.2 183 7-223 65-284 (852)
17 1r4x_A Gamma1-COP, coatomer ga 97.0 0.00012 4.2E-09 71.1 1.0 39 70-110 225-263 (275)
18 1b3u_A Protein (protein phosph 97.0 0.0011 3.7E-08 64.3 7.4 56 21-76 356-413 (588)
19 1b3u_A Protein (protein phosph 97.0 0.0011 3.8E-08 64.2 7.0 37 184-220 336-388 (588)
20 1ibr_B P95, importin beta-1 su 96.9 0.009 3.1E-07 56.0 11.7 161 29-223 218-436 (462)
21 4db8_A Armadillo-repeat protei 96.8 0.015 5.1E-07 50.8 12.4 48 184-231 150-216 (252)
22 2jdq_A Importin alpha-1 subuni 96.8 0.033 1.1E-06 52.3 14.9 118 111-228 120-267 (450)
23 3ltj_A Alpharep-4; protein eng 96.7 0.015 5E-07 49.7 11.0 142 34-223 17-166 (201)
24 4b8j_A Importin subunit alpha- 96.6 0.039 1.3E-06 54.1 14.6 122 111-232 173-323 (528)
25 1wa5_B Importin alpha subunit; 96.6 0.049 1.7E-06 53.7 15.4 120 111-231 186-335 (530)
26 4hxt_A De novo protein OR329; 96.5 0.02 7E-07 49.2 10.7 48 184-231 140-206 (252)
27 2qk2_A LP04448P; mini spindles 96.5 0.1 3.5E-06 46.4 15.2 114 116-254 97-232 (242)
28 3ltm_A Alpha-REP4; protein eng 96.4 0.023 8E-07 48.8 10.2 150 20-224 15-172 (211)
29 2jdq_A Importin alpha-1 subuni 96.4 0.025 8.4E-07 53.2 11.1 165 26-224 190-390 (450)
30 4db8_A Armadillo-repeat protei 96.2 0.041 1.4E-06 48.0 11.1 110 112-222 110-249 (252)
31 4fdd_A Transportin-1; heat rep 96.1 0.03 1E-06 58.6 11.5 189 2-224 183-429 (852)
32 4db6_A Armadillo repeat protei 96.0 0.038 1.3E-06 47.0 9.6 38 185-222 151-207 (210)
33 1ibr_B P95, importin beta-1 su 95.9 0.063 2.2E-06 50.2 11.6 40 184-223 229-287 (462)
34 1wa5_B Importin alpha subunit; 95.9 0.23 7.8E-06 48.9 15.8 51 184-234 311-380 (530)
35 4b8j_A Importin subunit alpha- 95.4 0.15 5.1E-06 50.0 12.6 53 183-235 297-369 (528)
36 1u6g_C TIP120 protein, CAND1; 95.3 0.22 7.7E-06 54.2 14.5 188 7-222 23-241 (1230)
37 2bpt_A Importin beta-1 subunit 95.2 0.18 6.2E-06 51.4 12.6 171 26-223 93-294 (861)
38 4ady_A RPN2, 26S proteasome re 94.6 0.29 1E-05 54.7 13.3 43 183-225 623-677 (963)
39 1jdh_A Beta-catenin; beta-cate 94.6 1.3 4.6E-05 42.4 16.3 44 184-227 239-298 (529)
40 1qgr_A Protein (importin beta 94.2 0.22 7.5E-06 50.9 10.5 41 184-224 378-437 (876)
41 1te4_A Conserved protein MTH18 94.2 0.03 1E-06 45.7 3.3 34 184-217 85-126 (131)
42 2bpt_A Importin beta-1 subunit 93.9 0.25 8.7E-06 50.3 10.1 37 27-63 223-259 (861)
43 3hs8_A Adaptor protein complex 93.7 0.022 7.6E-07 54.9 2.0 83 332-419 122-209 (273)
44 4db6_A Armadillo repeat protei 93.4 0.3 1E-05 41.4 8.2 53 176-228 100-171 (210)
45 1qgr_A Protein (importin beta 93.3 0.59 2E-05 47.8 11.6 40 184-223 229-287 (876)
46 1xqr_A HSPBP1 protein; armadil 93.2 1.1 3.9E-05 42.6 12.8 154 17-231 19-203 (296)
47 2qk1_A Protein STU2; STU2P, XM 93.0 0.54 1.9E-05 43.2 10.0 21 202-222 198-218 (249)
48 3tjz_B Coatomer subunit gamma; 92.7 0.68 2.3E-05 46.0 10.8 62 150-216 226-289 (355)
49 2qk2_A LP04448P; mini spindles 92.5 5.2 0.00018 35.2 16.3 162 7-201 32-205 (242)
50 3tpo_A Importin subunit alpha- 92.3 3.7 0.00013 40.8 15.7 191 10-228 96-326 (529)
51 1jdh_A Beta-catenin; beta-cate 92.3 1 3.5E-05 43.3 11.2 88 136-224 228-339 (529)
52 2z6h_A Catenin beta-1, beta-ca 91.6 3.7 0.00013 41.8 14.9 42 185-226 237-294 (644)
53 1wa5_C Importin alpha RE-expor 91.1 1.5 5.3E-05 46.9 12.1 110 112-224 375-525 (960)
54 2z6h_A Catenin beta-1, beta-ca 90.6 1.6 5.3E-05 44.5 11.1 88 136-224 225-336 (644)
55 2z6g_A B-catenin; FULL-length, 90.6 2.1 7.1E-05 45.5 12.4 88 136-224 361-472 (780)
56 3grl_A General vesicular trans 90.0 4.6 0.00016 43.6 14.4 148 23-228 20-199 (651)
57 1te4_A Conserved protein MTH18 89.9 0.15 5.2E-06 41.4 2.4 40 184-223 54-101 (131)
58 2z6g_A B-catenin; FULL-length, 89.7 6 0.0002 42.0 15.0 43 185-227 373-431 (780)
59 3ul1_B Importin subunit alpha- 88.2 12 0.00041 37.1 15.3 186 10-224 77-303 (510)
60 4ffb_C Protein STU2; tubulin f 87.9 4.2 0.00015 37.0 10.9 70 129-219 116-207 (278)
61 2qk1_A Protein STU2; STU2P, XM 87.9 8.8 0.0003 35.1 13.1 84 114-198 120-217 (249)
62 3ul1_B Importin subunit alpha- 84.2 17 0.00057 36.2 13.8 51 183-233 285-354 (510)
63 3nmw_A APC variant protein; AR 81.1 11 0.00039 36.5 11.1 26 33-58 129-157 (354)
64 3now_A UNC-45 protein, SD10334 81.1 8.9 0.0003 42.0 11.3 45 184-228 677-741 (810)
65 1xqr_A HSPBP1 protein; armadil 80.8 2.7 9.2E-05 40.0 6.4 90 131-235 55-165 (296)
66 2db0_A 253AA long hypothetical 79.1 6.8 0.00023 37.5 8.3 86 113-201 122-210 (253)
67 3tpo_A Importin subunit alpha- 77.4 25 0.00085 34.9 12.4 52 183-234 304-374 (529)
68 2x19_B Importin-13; nuclear tr 76.7 1.4 4.7E-05 46.5 3.3 127 44-201 423-556 (963)
69 3b2a_A TON_1937, putative unch 75.4 44 0.0015 32.6 13.0 136 29-201 34-179 (265)
70 2x1g_F Cadmus; transport prote 72.9 7.1 0.00024 41.5 7.5 108 113-225 436-573 (971)
71 3m1i_C Exportin-1; heat repeat 71.2 21 0.00072 38.7 10.9 65 137-202 196-264 (1049)
72 1wa5_C Importin alpha RE-expor 70.0 14 0.0005 39.5 9.2 130 43-201 376-525 (960)
73 3tjz_B Coatomer subunit gamma; 69.1 4.8 0.00017 39.9 4.9 50 184-233 116-177 (355)
74 2of3_A ZYG-9; multifunctional 69.0 19 0.00066 34.4 8.9 29 170-198 202-233 (266)
75 4ady_A RPN2, 26S proteasome re 68.5 35 0.0012 38.4 12.1 82 10-94 377-461 (963)
76 3now_A UNC-45 protein, SD10334 67.6 33 0.0011 37.7 11.4 124 111-235 549-705 (810)
77 4gmo_A Putative uncharacterize 64.3 8.2 0.00028 40.4 5.8 41 185-225 47-106 (684)
78 2x1g_F Cadmus; transport prote 64.0 4 0.00014 43.3 3.4 127 43-201 436-572 (971)
79 3nmz_A APC variant protein; pr 62.8 25 0.00085 35.6 8.8 23 202-224 386-408 (458)
80 2x19_B Importin-13; nuclear tr 57.8 34 0.0012 36.1 9.0 108 113-224 422-556 (963)
81 3m1i_C Exportin-1; heat repeat 57.6 5.9 0.0002 43.0 3.4 56 148-203 512-571 (1049)
82 3opb_A SWI5-dependent HO expre 55.0 31 0.0011 37.9 8.4 131 7-164 187-325 (778)
83 1xm9_A Plakophilin 1; armadill 52.3 78 0.0027 31.0 10.1 34 24-61 2-35 (457)
84 3l6x_A Catenin delta-1; cateni 50.7 2.4E+02 0.0083 29.6 14.2 42 184-225 321-385 (584)
85 1xm9_A Plakophilin 1; armadill 50.3 1.9E+02 0.0065 28.2 16.2 41 184-224 296-360 (457)
86 2of3_A ZYG-9; multifunctional 47.0 2E+02 0.0067 27.4 11.7 78 135-216 132-228 (266)
87 1lsh_A Lipovitellin (LV-1N, LV 46.1 22 0.00076 39.5 5.6 173 8-223 413-597 (1056)
88 3a6p_A Exportin-5; exportin-5, 42.0 24 0.00082 39.6 5.2 33 43-75 438-471 (1204)
89 3nmw_A APC variant protein; AR 39.4 1.8E+02 0.0063 28.0 10.4 154 41-228 97-296 (354)
90 4ffb_C Protein STU2; tubulin f 38.8 1E+02 0.0036 27.7 8.1 16 2-17 64-79 (278)
91 3opb_A SWI5-dependent HO expre 37.0 21 0.00071 39.3 3.6 44 181-224 663-728 (778)
92 3ibv_A Exportin-T; karyopherin 36.5 40 0.0014 37.1 5.8 111 113-224 413-566 (980)
93 3gs3_A Symplekin, LD45768P; he 34.7 3E+02 0.01 26.0 12.4 75 40-146 27-101 (257)
94 4gmo_A Putative uncharacterize 33.5 22 0.00076 37.2 3.0 69 118-201 36-105 (684)
95 3o2t_A Symplekin; heat repeat, 33.2 2.5E+02 0.0086 28.2 10.5 74 40-146 37-111 (386)
96 3nmz_A APC variant protein; pr 32.5 2.6E+02 0.0089 28.2 10.6 48 42-94 214-267 (458)
97 3oc3_A Helicase MOT1, MOT1; re 31.6 72 0.0025 35.0 6.5 114 26-197 297-432 (800)
98 3gbx_A Serine hydroxymethyltra 30.7 58 0.002 30.1 5.1 40 21-60 377-417 (420)
99 3g2s_A C-terminal fragment of 30.7 1.4E+02 0.0048 26.0 7.2 76 2-79 57-146 (149)
100 3ecd_A Serine hydroxymethyltra 30.1 53 0.0018 30.4 4.6 39 22-60 379-423 (425)
101 1lrv_A LRV, leucine-rich repea 28.3 17 0.00058 33.9 1.0 34 184-217 86-120 (244)
102 3mhs_B Protein SUS1; multi-pro 28.3 47 0.0016 27.4 3.6 71 60-146 19-91 (96)
103 1lrv_A LRV, leucine-rich repea 26.3 23 0.00077 33.1 1.4 68 140-217 28-96 (244)
104 2b6c_A Hypothetical protein EF 26.2 1.7E+02 0.0057 26.3 7.2 47 202-249 166-212 (220)
105 1l9l_A Granulysin; saposin fol 23.7 71 0.0024 24.8 3.6 37 27-66 8-44 (74)
106 3ecs_A Translation initiation 20.5 1.1E+02 0.0039 29.8 5.2 37 111-147 86-122 (315)
107 4hat_C Exportin-1; heat repeat 20.2 52 0.0018 36.6 3.0 129 42-203 428-571 (1023)
No 1
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=3.1e-38 Score=310.50 Aligned_cols=170 Identities=40% Similarity=0.640 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCCCCcccccCCCchhhhhccCCCCCCCCCCccchhhhhHHHHHHHHhhhccccccCC
Q psy8503 241 SIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLP 320 (421)
Q Consensus 241 s~~~Le~~L~~Y~~~~~~~pfd~~svp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~L~~~ipe~~~l~ 320 (421)
+++.||++|++|+++++++|||+++||..+.+. .++.....+.. + .+.+.+.+..+++.|+++|+ +||||++|
T Consensus 2 sl~~Le~~L~~Y~~~~~~~~Fd~~~Vp~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~~~~~~ya~~L~-~ipef~~l- 74 (322)
T 1pzd_A 2 SIPGLERALQQYTLEPSEKPFDLKSVPLATAPL---AEQRTESTPVT-A-AKQPEKVAATRQEIFQEQLA-AVPEFQGL- 74 (322)
T ss_dssp -------------------------------------------------------CCCCSHHHHHHHHHH-TCGGGTTC-
T ss_pred CHHHHHHHHHHHhccCCCCCcccccCcchhhhh---hhhcccccccc-c-ccccccccchhHHHHHHHHh-cchhHHHc-
Confidence 578999999999977889999999999532221 11111100000 0 11122233457789999999 99999999
Q ss_pred Ccccccc-cceeE-------EEEEEeeeecceeEEEE-------------------------------------------
Q psy8503 321 GTLFKSA-APVRR-------DLRSVFHSYAVSMRRQL------------------------------------------- 349 (421)
Q Consensus 321 G~l~kSs-~pv~L-------~V~~vKHif~~hiVlQf------------------------------------------- 349 (421)
|++|||| +||+| +|+||||+|++||||||
T Consensus 75 G~l~kSS~~~v~LTE~EtEYvV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~~~~~~~ip~~~L~~~~~g~~ 154 (322)
T 1pzd_A 75 GPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPARSLPYNQPGTC 154 (322)
T ss_dssp CCCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECBTCCEEE
T ss_pred CcccccCCCcccccCCCceeEEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCCceEEEEEEHhHCCCCCCeeE
Confidence 9999999 99999 99999999999999999
Q ss_pred ---------------------------EeeCCCC----Cc------ccceeeccccccccccCCChHHHHhhhcccCCcc
Q psy8503 350 ---------------------------DVHSASG----VG------LEDLEISLSDQMAKVNKPNFLALWEEAETDESMN 392 (421)
Q Consensus 350 ---------------------------dvdp~tg----~g------lEdlei~~~D~i~~~~~~nF~~~We~l~~~~~~~ 392 (421)
||||+|| +| ||||+|+++|||+|++++||.++||+++.+ +
T Consensus 155 yv~~~~~~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~---~ 231 (322)
T 1pzd_A 155 YTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDE---F 231 (322)
T ss_dssp EEEEECCSSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCST---T
T ss_pred EEEEEecCCCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeecccCchHHHHHhcCCc---c
Confidence 9999998 56 999999999999999999999999999866 7
Q ss_pred cceeeEeccCcccHHHHHHHhhcccCCC
Q psy8503 393 EMEDTFCLSKMESIQEAVASILLPFPRY 420 (421)
Q Consensus 393 e~~~tf~L~~~~sl~~Av~~i~~~fg~~ 420 (421)
|.++||+|+.+++|++||++|+++|||.
T Consensus 232 E~~~tf~L~~~~sL~~AV~~l~~~Lgm~ 259 (322)
T 1pzd_A 232 QKEETFTLSTIKTLEEAVGNIVKFLGMH 259 (322)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHHTCE
T ss_pred ceEEEEEccCcCcHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999994
No 2
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=99.97 E-value=1e-31 Score=259.76 Aligned_cols=116 Identities=40% Similarity=0.624 Sum_probs=111.3
Q ss_pred hhHHHHHHHHhhhccccccCCCcccccc-cceeE-------EEEEEeeeecceeEEEE----------------------
Q psy8503 300 ARVESYYEKLSAALPEIANLPGTLFKSA-APVRR-------DLRSVFHSYAVSMRRQL---------------------- 349 (421)
Q Consensus 300 ~~~~~y~e~L~~~ipe~~~l~G~l~kSs-~pv~L-------~V~~vKHif~~hiVlQf---------------------- 349 (421)
.+++.|+++|+ +||||++| |++|||| +||+| +|+||||+|++||||||
T Consensus 9 ~~~~~ya~~L~-~ipef~~l-G~l~kSS~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~i~NTL~dq~LenVsV~~~~~d 86 (275)
T 1r4x_A 9 TRQEIFQEQLA-AVPEFRGL-GPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTE 86 (275)
T ss_dssp CHHHHHHHHHH-TSGGGTTS-CSCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESS
T ss_pred chhHHHHHHHh-cChhHHHc-CcccccCCCcccccCCCCceEEEEEEEecCCcEEEEEEeEEccCcEEEeeEEEEEEcCC
Confidence 47899999999 99999999 9999999 89999 99999999999999999
Q ss_pred ------------------------------------------------EeeCCCC----Cc------ccceeeccccccc
Q psy8503 350 ------------------------------------------------DVHSASG----VG------LEDLEISLSDQMA 371 (421)
Q Consensus 350 ------------------------------------------------dvdp~tg----~g------lEdlei~~~D~i~ 371 (421)
||||+|| +| |||++|+++|||+
T Consensus 87 ~~~~~~~ipi~~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~ 166 (275)
T 1r4x_A 87 AYEVLXYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQ 166 (275)
T ss_dssp SCEEEEEECEEEECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEE
T ss_pred CceEEEeeeccccCCCCCccEEEEEEcCCCccccccceeEEEEEEEEEeccCCCCCcCCCCccceEEccceeechhhEEe
Confidence 9999998 56 9999999999999
Q ss_pred cccCCChHHHHhhhcccCCcccceeeEeccCcccHHHHHHHhhcccCCC
Q psy8503 372 KVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASILLPFPRY 420 (421)
Q Consensus 372 ~~~~~nF~~~We~l~~~~~~~e~~~tf~L~~~~sl~~Av~~i~~~fg~~ 420 (421)
|++++||.++||+++.+ +|.++||+|+.+++|++||++|+++|||.
T Consensus 167 p~~~~nF~~~We~l~~~---~E~~~tf~L~~~~sl~~AV~~l~~~Lgm~ 212 (275)
T 1r4x_A 167 KVMKLNFEAAWDEVGDE---FEKEETFTLSTIKTLEEAVGNIVKFLGMH 212 (275)
T ss_dssp ECCCSCHHHHHHHHCST---TCEEEEEEETTCCCHHHHHHHHHHHHTCE
T ss_pred ecccCchHHHHHhcCCc---cceEEEEEccCcCcHHHHHHHHHHhcCCc
Confidence 99999999999999866 79999999999999999999999999984
No 3
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.92 E-value=8.8e-26 Score=233.75 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=176.6
Q ss_pred CCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccc
Q psy8503 4 DSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGG 83 (421)
Q Consensus 4 DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg 83 (421)
|++++|...|+++|++++++++++.+++++..|+.+.+++||..+|.+|..+|.|||.+....+++|.+.|+.+|
T Consensus 380 d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~----- 454 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAG----- 454 (621)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHG-----
T ss_pred CCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcch-HHHHHHHHHhcC
Q psy8503 84 IDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHT-SLAVRILHLLGK 162 (421)
Q Consensus 84 ~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~-~l~~rIL~~LG~ 162 (421)
++ .+..+++.+..++..+|+.++.++.+||++|+||+.. .+...++.+||+
T Consensus 455 ---------------------------~~-v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGE 506 (621)
T 2vgl_A 455 ---------------------------DY-VSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGE 506 (621)
T ss_dssp ---------------------------GG-SCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred ---------------------------cc-chHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcc
Confidence 65 7789999999999999999999999999999999987 555567799999
Q ss_pred CCCCCCC-----CccceeEEeeccccCchhHHHHHHHHHHHhHh--------------hhcC--CCChhhhhhHHHHHHH
Q psy8503 163 EGPRAKQ-----PSKYIRFIYNRVILENATVRAAAVTAMAQFGA--------------LCQM--DGDDEVRDRATYYHSI 221 (421)
Q Consensus 163 egp~t~~-----P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~--------------r~~~--D~DDEVRDRA~~yl~i 221 (421)
+|+...+ |..++|+++||...|++.||+.+++|++||+. +|.. |.|+||||||.+|.++
T Consensus 507 y~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 507 FGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred hHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 9987665 67999999999999999999999999999987 5666 9999999999999999
Q ss_pred Hhhh
Q psy8503 222 LASQ 225 (421)
Q Consensus 222 l~~~ 225 (421)
|+..
T Consensus 587 l~~~ 590 (621)
T 2vgl_A 587 STVA 590 (621)
T ss_dssp HHSS
T ss_pred HccC
Confidence 9754
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.91 E-value=1.1e-24 Score=221.41 Aligned_cols=188 Identities=16% Similarity=0.304 Sum_probs=175.3
Q ss_pred CCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhcccccc
Q psy8503 3 SDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRG 82 (421)
Q Consensus 3 ~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrg 82 (421)
+|+ .+|-..|+.+|.+.+++++++.+++++..|+.+.+++||..++.+|..+|.|||......+++|...|+++|
T Consensus 329 ~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~---- 403 (591)
T 2vgl_B 329 NDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV---- 403 (591)
T ss_dssp TSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC----
T ss_pred CCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccc----
Confidence 445 889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcC
Q psy8503 83 GIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGK 162 (421)
Q Consensus 83 g~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~ 162 (421)
++-.+.. +.++..+++..|+.++.++.+||+++|||+.+.+...++.+||+
T Consensus 404 ----------------------------~~v~~e~-i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGe 454 (591)
T 2vgl_B 404 ----------------------------NYVVQEA-IVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGE 454 (591)
T ss_dssp ----------------------------HHHHHHH-HHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHT
T ss_pred ----------------------------hHHHHHH-HHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHc
Confidence 6666555 66899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh---------------hhcCCC-ChhhhhhHHHHHHHHhh
Q psy8503 163 EGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA---------------LCQMDG-DDEVRDRATYYHSILAS 224 (421)
Q Consensus 163 egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~---------------r~~~D~-DDEVRDRA~~yl~il~~ 224 (421)
.|+...+|..++|.++||+..|++.||+++++|++|++. +|..|. |.||||||.+|+++|+.
T Consensus 455 y~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 455 YAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp TCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred ccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999999999999997 556775 45999999999999965
No 5
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.90 E-value=9.8e-24 Score=216.72 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=172.4
Q ss_pred CCCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccc
Q psy8503 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFR 81 (421)
Q Consensus 2 I~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfr 81 (421)
++|++.+|...|+.+|.+.+++++++.+++++..|+.+.+++||..++.+|..+|.|||......+..|-..|+.+|
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~--- 435 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG--- 435 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG---
T ss_pred ccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc---
Confidence 57999999999999999999999999999999999999999999999999999999997654555566668888877
Q ss_pred cccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcc-cCcchHHHHHHHHHh
Q psy8503 82 GGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIE-DCEHTSLAVRILHLL 160 (421)
Q Consensus 82 gg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIE-Dce~~~l~~rIL~~L 160 (421)
...+..++..+.++++..|+.++.++.+||++++ ||++..+...++.+|
T Consensus 436 ------------------------------~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wil 485 (618)
T 1w63_A 436 ------------------------------SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCI 485 (618)
T ss_dssp ------------------------------GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHH
T ss_pred ------------------------------chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4567789999999999999999999999999999 589999989999999
Q ss_pred cCCC------------CCCCCCccceeEEeeccc--cCchhHHHHHHHHHHHhHh--------------hhcCCCChhhh
Q psy8503 161 GKEG------------PRAKQPSKYIRFIYNRVI--LENATVRAAAVTAMAQFGA--------------LCQMDGDDEVR 212 (421)
Q Consensus 161 G~eg------------p~t~~P~kyIR~IyNRvi--LEn~~VRaAAv~aLakf~~--------------r~~~D~DDEVR 212 (421)
|+.| |.+.+|++++++++|-+- .|++.||+++++|++||+. +|..|.|+|||
T Consensus 486 GEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evr 565 (618)
T 1w63_A 486 GEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQ 565 (618)
T ss_dssp HHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHH
T ss_pred hhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHH
Confidence 9987 667789999999999332 8999999999999999998 78899999999
Q ss_pred hhHHHHHHHHhh
Q psy8503 213 DRATYYHSILAS 224 (421)
Q Consensus 213 DRA~~yl~il~~ 224 (421)
|||.+|+++|..
T Consensus 566 dRA~~y~~ll~~ 577 (618)
T 1w63_A 566 QRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999999999865
No 6
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.09 E-value=0.00012 Score=65.87 Aligned_cols=177 Identities=16% Similarity=0.040 Sum_probs=121.4
Q ss_pred CCCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCC--chhHhHHHHHHHHHhhccc
Q psy8503 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP--RKHAVLMNFLSAMLRDEGV 79 (421)
Q Consensus 2 I~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp--~K~~~~l~FL~~~Lr~eGv 79 (421)
+.|+|..+-..|+.+|-+.|++..++.|++.+. |+..-+-..|+..|..-.+ .....++..|.+.+..+.
T Consensus 32 L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-------d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~- 103 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS-------DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK- 103 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS-
T ss_pred HHcCCHHHHHHHHHHHHccCCchHHHHHHHHHc-------CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC-
Confidence 568888888889999999998877777765443 2222333445555543321 223334555554443444
Q ss_pred cccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHH
Q psy8503 80 FRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHL 159 (421)
Q Consensus 80 frgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~ 159 (421)
...-+...+.++-.+-...|...+..+..|.+.+.|.. +.+-...+..
T Consensus 104 -------------------------------~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~-~~vR~~a~~a 151 (280)
T 1oyz_A 104 -------------------------------SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKS-TNVRRATAFA 151 (280)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence 56677888888888877777777788888888888854 6677777777
Q ss_pred hcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh----------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 160 LGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA----------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 160 LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~----------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
||.-+.. ..+..+...+-=+++.||.+|+.+|++++. .++.|+|.+||..|...+.-+.
T Consensus 152 L~~~~~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 152 ISVINDK-----ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHTC--------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHhcCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 8876542 234444444445788999999999999972 7889999999999998777664
No 7
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.88 E-value=2e-05 Score=81.23 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCCCCchhHHHHHHHHhhccCCcch---------HHHHHHHHHHhhh----------hhcchh-hHHHHHHHHHHHHhCC
Q psy8503 1 MISDSNRSIATLAITTLLKTGSESS---------VDRLMKQIATFVS----------EISDEF-KIVVVEAIRALCLKFP 60 (421)
Q Consensus 1 LI~DsNrsiatlAittLLKTG~E~s---------vdrL~kqI~~fms----------eisdef-Ki~vv~ai~~Lc~kfp 60 (421)
|+.|+|..+...|+..|...+..+. ++.|++.+...+. .+++++ .+.+++.++.+|...|
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 5789999999999999988886541 3334444433321 244555 5789999999998888
Q ss_pred chhHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhh
Q psy8503 61 RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHL 140 (421)
Q Consensus 61 ~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~L 140 (421)
+-...++.+|...++.-..-+ ..+....-+.+.++..+ ...|+.++.+...|
T Consensus 267 ~~~~~~~~~L~~l~~~~~~~~---------------------------~~~~aV~~ea~~~i~~l-~~~~~l~~~a~~~L 318 (618)
T 1w63_A 267 DSSEAMNDILAQVATNTETSK---------------------------NVGNAILYETVLTIMDI-KSESGLRVLAINIL 318 (618)
T ss_dssp HHHHTTHHHHHHHHHTSCCSS---------------------------THHHHHHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccc---------------------------chHHHHHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 777778888888775421000 00122222333333332 22344455555666
Q ss_pred hhhcc--cCcchHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh------------hhcCC
Q psy8503 141 CEFIE--DCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA------------LCQMD 206 (421)
Q Consensus 141 cefIE--Dce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~------------r~~~D 206 (421)
+.|++ |.+--.++.+-|..++...|..-. .|...|++.+-=++..||-.|+..|.+++. .++.|
T Consensus 319 ~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~ 396 (618)
T 1w63_A 319 GRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS 396 (618)
T ss_dssp HHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhhCHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh
Confidence 66664 333344555555555543322111 122222222222456666666666666554 44555
Q ss_pred CChhhhhhHHHHHHHHhh
Q psy8503 207 GDDEVRDRATYYHSILAS 224 (421)
Q Consensus 207 ~DDEVRDRA~~yl~il~~ 224 (421)
.|+++|..+...+..+..
T Consensus 397 ~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 397 CEPEFKADCASGIFLAAE 414 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 666666666555554433
No 8
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.79 E-value=0.00013 Score=62.53 Aligned_cols=167 Identities=22% Similarity=0.186 Sum_probs=98.6
Q ss_pred CCCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccc
Q psy8503 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFR 81 (421)
Q Consensus 2 I~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfr 81 (421)
+.|+|..+-..|+..|-+.|.+..++.|++.+. |+.--+-..|++.|+..-.. ..+..|...|.++
T Consensus 23 L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-------~~~~~vr~~a~~~L~~~~~~---~~~~~L~~~l~d~---- 88 (201)
T 3ltj_A 23 LQDDSYYVRRAAAYALGKIGDERAVEPLIKALK-------DEDAWVRRAAADALGQIGDE---RAVEPLIKALKDE---- 88 (201)
T ss_dssp TTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-------CSSHHHHHHHHHHHHHHCCG---GGHHHHHHHTTCS----
T ss_pred hcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc-------CCCHHHHHHHHHHHHhhCCH---HHHHHHHHHHcCC----
Confidence 678888898999999999999888888776553 22223444555555432111 2233444455432
Q ss_pred cccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhc
Q psy8503 82 GGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLG 161 (421)
Q Consensus 82 gg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG 161 (421)
...-+...+.++-.+- .|+ ++..|.+.+.|. .+.+....+..||
T Consensus 89 -----------------------------~~~vr~~a~~aL~~~~--~~~----~~~~L~~~l~d~-~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 89 -----------------------------DGWVRQSAAVALGQIG--DER----AVEPLIKALKDE-DWFVRIAAAFALG 132 (201)
T ss_dssp -----------------------------SHHHHHHHHHHHHHHC--CGG----GHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHHhC--cHH----HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 3445556666665532 233 344555566554 3445555555555
Q ss_pred CCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh--------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 162 KEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA--------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 162 ~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~--------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
+-+.. ..+..+...+-=+++.||.+|+.+|++++. ..+.|+|.+||..|.-.+.-++
T Consensus 133 ~~~~~-----~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 133 EIGDE-----RAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHTCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HhCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 54421 233333333333567888888888888875 6677788888888876665543
No 9
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.78 E-value=0.00015 Score=62.67 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=18.2
Q ss_pred CCCCchhHHHHHHHHhhccCCcchHHHHHHHH
Q psy8503 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQI 33 (421)
Q Consensus 2 I~DsNrsiatlAittLLKTG~E~svdrL~kqI 33 (421)
+.|+|..+-..|+..|-+.|.+..++.|++.+
T Consensus 28 L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l 59 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYALGKIGDERAVEPLIKAL 59 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 34555666666666666666655555555433
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.52 E-value=0.00056 Score=69.76 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=63.2
Q ss_pred CCCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhH--hHHHHHHHHHhhc
Q psy8503 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHA--VLMNFLSAMLRDE 77 (421)
Q Consensus 2 I~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~--~~l~FL~~~Lr~e 77 (421)
++|+|..+-.+|+.+|-+.|+++-++.|+..+-..+.+=+..-+-..+.++..++.++|.-.. .++..|...|.+.
T Consensus 95 L~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS 172 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS
T ss_pred cCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC
Confidence 578999999999999999999999999999998888776667777888899999999998544 4667777777653
No 11
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.42 E-value=0.0014 Score=58.96 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=110.5
Q ss_pred CCCCchhHHHHHHHHhhccC-CcchHHHHHHHHHH-hhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccc
Q psy8503 2 ISDSNRSIATLAITTLLKTG-SESSVDRLMKQIAT-FVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGV 79 (421)
Q Consensus 2 I~DsNrsiatlAittLLKTG-~E~svdrL~kqI~~-fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGv 79 (421)
+.|+|..+-..|+.+|-+.| .+..+..+++.+.. ..++=+.+-+...+.++..++...|.-....+..|...|.++.
T Consensus 63 l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~- 141 (280)
T 1oyz_A 63 CSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKS- 141 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSC-
T ss_pred HcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCC-
Confidence 46788888888999998888 45667777776653 4455555678888889988887766555566667776665533
Q ss_pred cccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHH
Q psy8503 80 FRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHL 159 (421)
Q Consensus 80 frgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~ 159 (421)
..-+...+.++-.+-. | .++..|.+.+.|... .+-...+.-
T Consensus 142 --------------------------------~~vR~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~-~vr~~a~~a 182 (280)
T 1oyz_A 142 --------------------------------TNVRRATAFAISVIND--K----ATIPLLINLLKDPNG-DVRNWAAFA 182 (280)
T ss_dssp --------------------------------HHHHHHHHHHHHTC---------CCHHHHHHHHTCSSH-HHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHhcCC--H----HHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 3334444444433221 2 245566666666443 344444444
Q ss_pred hcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh--------hhcCCCChhhhhhHHHHHHHH
Q psy8503 160 LGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA--------LCQMDGDDEVRDRATYYHSIL 222 (421)
Q Consensus 160 LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~--------r~~~D~DDEVRDRA~~yl~il 222 (421)
||.-++. ....+..+.+.+-=+++.||.+|+.+|++++. .++.|+| ||.+|...+.-+
T Consensus 183 L~~~~~~---~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 183 ININKYD---NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp HHHHTCC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred HHhhccC---cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 4443321 12334444444444678999999999999986 6666644 999887766655
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.32 E-value=0.0023 Score=55.17 Aligned_cols=60 Identities=10% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCCCchhHHHHHHHHhhcc--CCcchHHHH-----HHHHHHhhhhhcchhhHHHHHHHHHHHHhCCc
Q psy8503 2 ISDSNRSIATLAITTLLKT--GSESSVDRL-----MKQIATFVSEISDEFKIVVVEAIRALCLKFPR 61 (421)
Q Consensus 2 I~DsNrsiatlAittLLKT--G~E~svdrL-----~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~ 61 (421)
+.+++..+-..|+.+|-.. +++++.+.+ ++.+-.++.+=+.+-+...+.++.+|+...|.
T Consensus 11 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 11 LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 4455655555555555443 333344443 33344455544556677777777777765443
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.21 E-value=0.0024 Score=69.52 Aligned_cols=183 Identities=10% Similarity=0.139 Sum_probs=123.2
Q ss_pred hhHHHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCch----------hHhHHHHHHHHHhh
Q psy8503 7 RSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRK----------HAVLMNFLSAMLRD 76 (421)
Q Consensus 7 rsiatlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K----------~~~~l~FL~~~Lr~ 76 (421)
|..|..++..+.+...+..++.++..+-.-+.+-...-+-...+++..++...+.. |..++.+|...+.+
T Consensus 65 R~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~ 144 (1230)
T 1u6g_C 65 QNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK 144 (1230)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC
Confidence 66777788888877777778888888877666555555667788888888888754 88888999888865
Q ss_pred ccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChh----hHHHHHHhhhhhcccCcchHH
Q psy8503 77 EGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPE----AKETGLAHLCEFIEDCEHTSL 152 (421)
Q Consensus 77 eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~----~ke~~L~~LcefIEDce~~~l 152 (421)
.. ....+...++++..+++..|+ .-...+..|...++|.+ +.+
T Consensus 145 ~~--------------------------------~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~-~~v 191 (1230)
T 1u6g_C 145 QE--------------------------------DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR-LAV 191 (1230)
T ss_dssp CS--------------------------------CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSS-HHH
T ss_pred CC--------------------------------chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCc-HHH
Confidence 34 456677788888887754432 34677788888888754 456
Q ss_pred HHHHHHHhcCCCCCCCCCc--cceeEEeeccccC-chhHHHHHHHHHHHhHh------------------hhcCCCChhh
Q psy8503 153 AVRILHLLGKEGPRAKQPS--KYIRFIYNRVILE-NATVRAAAVTAMAQFGA------------------LCQMDGDDEV 211 (421)
Q Consensus 153 ~~rIL~~LG~egp~t~~P~--kyIR~IyNRviLE-n~~VRaAAv~aLakf~~------------------r~~~D~DDEV 211 (421)
..+.+..||.-+....++. ..+.++.+.+--+ ++.+|.+|+.+|+.++. ..+.|+||+|
T Consensus 192 R~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp HHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 6666666665554433221 2244444433222 24788899999988775 5667999999
Q ss_pred hhhHHHHHHHH
Q psy8503 212 RDRATYYHSIL 222 (421)
Q Consensus 212 RDRA~~yl~il 222 (421)
|+-|.-.+..+
T Consensus 272 R~~a~~~l~~l 282 (1230)
T 1u6g_C 272 REYCIQAFESF 282 (1230)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887555544
No 14
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.20 E-value=0.0036 Score=65.11 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=93.1
Q ss_pred CCCchhHHHHHHHHhhccCCcchHHHHHHHHHHhh--hhhcchhhHHHHHHHHHHHHhCCchhH--hHHHHHHHHHhhcc
Q psy8503 3 SDSNRSIATLAITTLLKTGSESSVDRLMKQIATFV--SEISDEFKIVVVEAIRALCLKFPRKHA--VLMNFLSAMLRDEG 78 (421)
Q Consensus 3 ~DsNrsiatlAittLLKTG~E~svdrL~kqI~~fm--seisdefKi~vv~ai~~Lc~kfp~K~~--~~l~FL~~~Lr~eG 78 (421)
+|+|.-+-.+|+.+|=+.++.+-++.|+..|-..+ ++-+.--|--.+-++..++.++|.--. .+++-+.+.|.+..
T Consensus 121 ~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC
Confidence 57888888889999988888888888888888877 666666677778888888888887655 66777777775433
Q ss_pred ccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhh----HHHHHHhhhhhccc--Cc----
Q psy8503 79 VFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEA----KETGLAHLCEFIED--CE---- 148 (421)
Q Consensus 79 vfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~----ke~~L~~LcefIED--ce---- 148 (421)
.--+.+.+-++.++....|+. .......|+.++.+ |.
T Consensus 201 ---------------------------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 201 ---------------------------------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccch
Confidence 334566667777777777752 33344556666543 42
Q ss_pred ------chHHHHHHHHHhcCCCCC
Q psy8503 149 ------HTSLAVRILHLLGKEGPR 166 (421)
Q Consensus 149 ------~~~l~~rIL~~LG~egp~ 166 (421)
-+-+.++||.+|+.-+|.
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSC
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC
Confidence 356778888888877664
No 15
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=97.19 E-value=7.6e-05 Score=73.79 Aligned_cols=39 Identities=51% Similarity=0.681 Sum_probs=34.3
Q ss_pred HHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCc
Q psy8503 70 LSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTS 110 (421)
Q Consensus 70 L~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~ 110 (421)
-+|.|.-.|+|+||++||+||||++. .||+|+|+|||.+
T Consensus 272 ~sHtL~LsG~~~gg~~VLvr~rl~~~--~gv~~kl~vRS~~ 310 (322)
T 1pzd_A 272 NTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARSSE 310 (322)
T ss_dssp SEEEEEEEEEETTSCEEEEEEEEEES--SSEEEEEEEEESS
T ss_pred cceEEEEEEEEeCCcEEEEEEEEeeC--CceEEEEEEecCC
Confidence 34566779999999999999999993 3899999999999
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.06 E-value=0.0068 Score=63.40 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=112.7
Q ss_pred hhHHHHHHHHhhccC----CcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHh-CCchhHhHHHHHHHHHhhccccc
Q psy8503 7 RSIATLAITTLLKTG----SESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLK-FPRKHAVLMNFLSAMLRDEGVFR 81 (421)
Q Consensus 7 rsiatlAittLLKTG----~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~k-fp~K~~~~l~FL~~~Lr~eGvfr 81 (421)
|..|.+.+-..++.. +++.-..+-+.+-..+.+=+..-+-.+.++|..+..+ +|..|.-++.+|...+...
T Consensus 65 R~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~---- 140 (852)
T 4fdd_A 65 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE---- 140 (852)
T ss_dssp HHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS----
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC----
Confidence 334444444444332 3334444445555555554444556667777777665 6888999999999887653
Q ss_pred cccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhh---------HHHHHHhhhhhcccCcchHH
Q psy8503 82 GGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEA---------KETGLAHLCEFIEDCEHTSL 152 (421)
Q Consensus 82 gg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~---------ke~~L~~LcefIEDce~~~l 152 (421)
....+...+.++..+++..|+. -+..+..|..++.|. .+.+
T Consensus 141 -----------------------------~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~v 190 (852)
T 4fdd_A 141 -----------------------------DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKI 190 (852)
T ss_dssp -----------------------------SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHH
T ss_pred -----------------------------CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHH
Confidence 3455666666666666666644 234566666666653 3445
Q ss_pred HHHHHHHhcCCCCCCCCC-----ccceeEEeeccccCchhHHHHHHHHHHHhHh------------------hhcCCCCh
Q psy8503 153 AVRILHLLGKEGPRAKQP-----SKYIRFIYNRVILENATVRAAAVTAMAQFGA------------------LCQMDGDD 209 (421)
Q Consensus 153 ~~rIL~~LG~egp~t~~P-----~kyIR~IyNRviLEn~~VRaAAv~aLakf~~------------------r~~~D~DD 209 (421)
-...+..|+.......+. ..+++.+...+-=+++.||.+|..+|..++. .++.|.|+
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 270 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDE 270 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcH
Confidence 555555555444322111 1345555555555788999999999999876 67789999
Q ss_pred hhhhhHHHHHHHHh
Q psy8503 210 EVRDRATYYHSILA 223 (421)
Q Consensus 210 EVRDRA~~yl~il~ 223 (421)
+||..|.-++..+.
T Consensus 271 ~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 271 NVALEACEFWLTLA 284 (852)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999975544443
No 17
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=97.05 E-value=0.00012 Score=71.07 Aligned_cols=39 Identities=51% Similarity=0.658 Sum_probs=34.2
Q ss_pred HHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCc
Q psy8503 70 LSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTS 110 (421)
Q Consensus 70 L~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~ 110 (421)
-+|.|.-.|+|+||++||+||||+++ .||+|+|+|||.+
T Consensus 225 ~~HtL~LsG~~~gg~~Vlvr~rl~~~--~gv~~kl~vRs~~ 263 (275)
T 1r4x_A 225 NTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARSLE 263 (275)
T ss_dssp SEEEEEEEEEETTTEEEEEEEEEEES--SSEEEEEEEEESS
T ss_pred cceEEEEEEEEeCCcEEEEEEEEecC--CceEEEEEEEcCC
Confidence 34566778999999999999999983 3899999999999
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.03 E-value=0.0011 Score=64.28 Aligned_cols=56 Identities=9% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchh--HhHHHHHHHHHhh
Q psy8503 21 GSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKH--AVLMNFLSAMLRD 76 (421)
Q Consensus 21 G~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~--~~~l~FL~~~Lr~ 76 (421)
|.+...+.++..+...+.|=.++-|..+++++..++..++... ..++..+...+.+
T Consensus 356 ~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413 (588)
T ss_dssp CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred hHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 5555556666666666666555666666666666666655432 3344445544444
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.98 E-value=0.0011 Score=64.18 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=28.9
Q ss_pred CchhHHHHHHHHHHHhHh----------------hhcCCCChhhhhhHHHHHH
Q psy8503 184 ENATVRAAAVTAMAQFGA----------------LCQMDGDDEVRDRATYYHS 220 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~----------------r~~~D~DDEVRDRA~~yl~ 220 (421)
.++.||.+|..+|..++. .++.|++++||.-|.-.+.
T Consensus 336 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 567899999999888763 6778999999987764443
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.86 E-value=0.009 Score=56.01 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=91.4
Q ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchh----H-hHHHHHHHHHhhccccccccceeeehhhhcccCCcceEE
Q psy8503 29 LMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKH----A-VLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQ 103 (421)
Q Consensus 29 L~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~----~-~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~ 103 (421)
++..+.....+-..+.|..+++++..++.++|... . .++.++...+++..
T Consensus 218 l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------- 272 (462)
T 1ibr_B 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI------------------------- 272 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-------------------------
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------------------
Confidence 46666666666667788889999999999998753 2 45566665555432
Q ss_pred EEEecCcchhhHHhHHHHHHHHHhhC-------------------h---hh---HHHHHHhhhhhcc---------cCcc
Q psy8503 104 LTVRSTSGLEYKASIADTIITIIEEN-------------------P---EA---KETGLAHLCEFIE---------DCEH 149 (421)
Q Consensus 104 l~vRs~~~~~~K~~ivd~i~~ii~~~-------------------p---~~---ke~~L~~LcefIE---------Dce~ 149 (421)
-+.+...++.+..+.+.. + -+ -...+..|.+.+. |+..
T Consensus 273 --------~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~ 344 (462)
T 1ibr_B 273 --------DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 344 (462)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchH
Confidence 222233333333322210 0 00 0233333333331 1233
Q ss_pred hHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChh
Q psy8503 150 TSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDE 210 (421)
Q Consensus 150 ~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDE 210 (421)
..-+.+.|..|+...|..--| ..+.++...+-=.+..+|.||+.+|+.++. +++.|++..
T Consensus 345 r~~a~~~L~~l~~~~~~~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 345555666655544421111 233333333334678899999999998874 677888999
Q ss_pred hhhhHHHHHHHHh
Q psy8503 211 VRDRATYYHSILA 223 (421)
Q Consensus 211 VRDRA~~yl~il~ 223 (421)
||.+|...+.-+.
T Consensus 424 Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 424 VRDTAAWTVGRIC 436 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766554
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.85 E-value=0.015 Score=50.79 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHh
Q psy8503 184 ENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQ 231 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~ 231 (421)
+++.||..|+.+|++++. ..+.++|++||..|...+..|-..++....
T Consensus 150 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 216 (252)
T 4db8_A 150 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 467899999999998875 678888999999999888877655444333
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.77 E-value=0.033 Score=52.33 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=78.1
Q ss_pred chhhHHhHHHHHHHHHhhChhhHHH-----HHHhhhhhcccCcchHHHHHHHHHhc---CCC-CCCCCC--ccceeEEee
Q psy8503 111 GLEYKASIADTIITIIEENPEAKET-----GLAHLCEFIEDCEHTSLAVRILHLLG---KEG-PRAKQP--SKYIRFIYN 179 (421)
Q Consensus 111 ~~~~K~~ivd~i~~ii~~~p~~ke~-----~L~~LcefIEDce~~~l~~rIL~~LG---~eg-p~t~~P--~kyIR~IyN 179 (421)
..+.+...+.++..+....|+.++. ++..|..++.+.....+....+..|| ... |..... ...+..+.+
T Consensus 120 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 199 (450)
T 2jdq_A 120 FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 4567777888888888777766654 46778888886555555554444444 332 322110 233334444
Q ss_pred ccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHH
Q psy8503 180 RVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQ 228 (421)
Q Consensus 180 RviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~ 228 (421)
-+-=+++.||..|..+|++++. .++.|+|++||..|...+..|....+.
T Consensus 200 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence 3334678999999999988864 677899999999999888877665444
No 23
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.71 E-value=0.015 Score=49.71 Aligned_cols=142 Identities=20% Similarity=0.160 Sum_probs=91.1
Q ss_pred HHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchh
Q psy8503 34 ATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLE 113 (421)
Q Consensus 34 ~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~ 113 (421)
+.++.-+.+..--+-..|++.|...-.. -.+..|...|.+ + ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~---~~~~~L~~~l~~-~--------------------------------~~~ 60 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDE---RAVEPLIKALKD-E--------------------------------DAW 60 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCG---GGHHHHHHHTTC-S--------------------------------SHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHcC-C--------------------------------CHH
Confidence 3455556666666777777777754331 233455556643 3 344
Q ss_pred hHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHH
Q psy8503 114 YKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAV 193 (421)
Q Consensus 114 ~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv 193 (421)
.+...+.++-.+- .| .++..|.+.+.| +.+.+....+..||+-+.. ..+..+...+-=+++.||.+|+
T Consensus 61 vr~~a~~~L~~~~--~~----~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~a~ 128 (201)
T 3ltj_A 61 VRRAAADALGQIG--DE----RAVEPLIKALKD-EDGWVRQSAAVALGQIGDE-----RAVEPLIKALKDEDWFVRIAAA 128 (201)
T ss_dssp HHHHHHHHHHHHC--CG----GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CH----HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCcH-----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5556666665432 23 345556666666 4556666666666665432 3444444444446888999999
Q ss_pred HHHHHhHh--------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 194 TAMAQFGA--------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 194 ~aLakf~~--------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
.+|++++. .++.|+|.+||..|...+.-+.
T Consensus 129 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 129 FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999986 7889999999999998887774
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.60 E-value=0.039 Score=54.11 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=81.7
Q ss_pred chhhHHhHHHHHHHHHhhChhhHHH-----HHHhhhhhcccCcchHHHHHHH---HHhcCCCCCCCC--CccceeEEeec
Q psy8503 111 GLEYKASIADTIITIIEENPEAKET-----GLAHLCEFIEDCEHTSLAVRIL---HLLGKEGPRAKQ--PSKYIRFIYNR 180 (421)
Q Consensus 111 ~~~~K~~ivd~i~~ii~~~p~~ke~-----~L~~LcefIEDce~~~l~~rIL---~~LG~egp~t~~--P~kyIR~IyNR 180 (421)
..+.+...+.++-.+....|+.++. ++..|...+.++....+...++ .-|....|.... -...+..+..-
T Consensus 173 ~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 252 (528)
T 4b8j_A 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL 252 (528)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 4677888888888888777776654 4567888886555555544444 444443322110 02234444444
Q ss_pred cccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHhh
Q psy8503 181 VILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQD 232 (421)
Q Consensus 181 viLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~ 232 (421)
+--+++.||..|+.+|+.++. .++.+.+++||..|...+..|...++...+.
T Consensus 253 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 445789999999999998874 6788999999999998888887655544433
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.59 E-value=0.049 Score=53.66 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=76.2
Q ss_pred chhhHHhHHHHHHHHHhhChhhHHH-----HHHhhhhhcccCcchHH---HHHHHHHhcCCC-CCCCCC--ccceeEEee
Q psy8503 111 GLEYKASIADTIITIIEENPEAKET-----GLAHLCEFIEDCEHTSL---AVRILHLLGKEG-PRAKQP--SKYIRFIYN 179 (421)
Q Consensus 111 ~~~~K~~ivd~i~~ii~~~p~~ke~-----~L~~LcefIEDce~~~l---~~rIL~~LG~eg-p~t~~P--~kyIR~IyN 179 (421)
..+.+...+.++..+....|+.++. ++..|.+.+.| ....+ ++..|.-|.... |....+ ...+..+.+
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 264 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 264 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH
Confidence 4667777888888877766666554 56667777776 33444 344444444432 221110 123333333
Q ss_pred ccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHh
Q psy8503 180 RVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQ 231 (421)
Q Consensus 180 RviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~ 231 (421)
-+-=+++.||..|+.+|+.++. .++.|.|++||..|...+..|..+++...+
T Consensus 265 lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 3334678999999999998874 677889999999998888877655444333
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.51 E-value=0.02 Score=49.17 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHh
Q psy8503 184 ENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQ 231 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~ 231 (421)
+++.||..|+.+|++++. ..+.+.|++||..|...+..|...++...+
T Consensus 140 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 206 (252)
T 4hxt_A 140 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 578899999999998875 777889999999999888888765554333
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.46 E-value=0.1 Score=46.37 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHh-hChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHH
Q psy8503 116 ASIADTIITIIE-ENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVT 194 (421)
Q Consensus 116 ~~ivd~i~~ii~-~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~ 194 (421)
..++..|+..+. ..+..|+.+..-|..+++.+.+..+.-.++..|.. .|+.||..++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~---------------------~~~~vr~~~l~ 155 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSN---------------------KNPSVKSETAL 155 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC---------------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---------------------CChHHHHHHHH
Confidence 344444444432 33455566666666666655555555555554421 24556666666
Q ss_pred HHHHhHh--------------------hhcCCCChhhhhhHHHHHHHHhhhc-HHHHhhhhcCCCCCChHHHHHHHHHhc
Q psy8503 195 AMAQFGA--------------------LCQMDGDDEVRDRATYYHSILASQN-KQLIQDYIIEPLMVSIPSLERALHAYN 253 (421)
Q Consensus 195 aLakf~~--------------------r~~~D~DDEVRDRA~~yl~il~~~~-~~~~~~~i~~~~~~s~~~Le~~L~~Y~ 253 (421)
.|+.+.. .|+.|.+.+||+.|.-.+..|-..- .+.+..|+.+ . +. .-.+.+.+|+
T Consensus 156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~-L--~~-~~~~~i~~~~ 231 (242)
T 2qk2_A 156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD-V--DP-LKMAKIKECQ 231 (242)
T ss_dssp HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT-S--CH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh-c--CH-HHHHHHHHHH
Confidence 6666421 7899999999999997777665442 2235555532 2 22 2335666665
Q ss_pred c
Q psy8503 254 L 254 (421)
Q Consensus 254 ~ 254 (421)
.
T Consensus 232 ~ 232 (242)
T 2qk2_A 232 E 232 (242)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.36 E-value=0.023 Score=48.78 Aligned_cols=150 Identities=20% Similarity=0.144 Sum_probs=88.5
Q ss_pred cCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccccceeeehhhhcccCCc
Q psy8503 20 TGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTG 99 (421)
Q Consensus 20 TG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~ 99 (421)
.++++.++.|++.+. |+..-+-..|++.|+..-. ...+..|...|.+ +
T Consensus 15 ~~~~~~~~~L~~~L~-------~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~-~--------------------- 62 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQ-------DDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD-E--------------------- 62 (211)
T ss_dssp -CCGGGHHHHHHHTT-------CSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC-S---------------------
T ss_pred hcCHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcC-C---------------------
Confidence 467888888877653 3445556666777764332 2233445555554 2
Q ss_pred ceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEee
Q psy8503 100 VTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYN 179 (421)
Q Consensus 100 vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyN 179 (421)
....+...+.++-.+- .|+ ++..|.+.+.|. .+.+....+..||+-+.. +.+..+..
T Consensus 63 -----------~~~vr~~a~~aL~~~~--~~~----~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~~-----~~~~~L~~ 119 (211)
T 3ltm_A 63 -----------DAWVRRAAADALGQIG--DER----AVEPLIKALKDE-DGWVRQSAAVALGQIGDE-----RAVEPLIK 119 (211)
T ss_dssp -----------CHHHHHHHHHHHHHHC--CGG----GHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG-----GGHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhhC--CHH----HHHHHHHHHcCC-CHHHHHHHHHHHHHhCcH-----HHHHHHHH
Confidence 3444555555554432 232 344444455553 344555555555554431 23333433
Q ss_pred ccccCchhHHHHHHHHHHHhHh--------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 180 RVILENATVRAAAVTAMAQFGA--------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 180 RviLEn~~VRaAAv~aLakf~~--------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
.+-=+++.||.+|+.+|++++. ..+.|+|.+||..|...+.-+..
T Consensus 120 ~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 120 ALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3333578899999999999875 77889999999999888877753
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.35 E-value=0.025 Score=53.16 Aligned_cols=165 Identities=9% Similarity=0.010 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHh-----HHHHHHHHHhhccccccccceeeehhhhcccCCcc
Q psy8503 26 VDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAV-----LMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGV 100 (421)
Q Consensus 26 vdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~-----~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~v 100 (421)
+..++..+...+.+=..+.+.....++..||...|..... .+..|.+.|+. +
T Consensus 190 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~---------------------- 246 (450)
T 2jdq_A 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-N---------------------- 246 (450)
T ss_dssp TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-S----------------------
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-C----------------------
Confidence 3445555555555545566667778888888644332211 22333333321 1
Q ss_pred eEEEEEecCcchhhHHhHHHHHHHHHhhChhhHH-----HHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCC-----
Q psy8503 101 TMQLTVRSTSGLEYKASIADTIITIIEENPEAKE-----TGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQP----- 170 (421)
Q Consensus 101 tm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke-----~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P----- 170 (421)
..+-+...+.++-.+....++.++ .++..|.+++.+. ...+....+..||.-......-
T Consensus 247 ----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 247 ----------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234455566666665555554333 3566677777664 3455555555555433211100
Q ss_pred -ccceeEEeeccccCchhHHHHHHHHHHHhHh--------------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 171 -SKYIRFIYNRVILENATVRAAAVTAMAQFGA--------------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 171 -~kyIR~IyNRviLEn~~VRaAAv~aLakf~~--------------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
...+..+.+.+-=+++.||.+|..+|++++. ..+.+.|.+||..|...+..|-.
T Consensus 316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1334444444444678899999999998864 55678888999988877665544
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.22 E-value=0.041 Score=47.97 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=59.3
Q ss_pred hhhHHhHHHHHHHHHhhChhhHH-----HHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCC------ccceeEEeec
Q psy8503 112 LEYKASIADTIITIIEENPEAKE-----TGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQP------SKYIRFIYNR 180 (421)
Q Consensus 112 ~~~K~~ivd~i~~ii~~~p~~ke-----~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P------~kyIR~IyNR 180 (421)
.+.+...+.++-.+....+.... .++..|.+++.+. ...+....+..|+.-.....+- ...+..+.+-
T Consensus 110 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 188 (252)
T 4db8_A 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 44555555555555432222101 2556666676654 3344444444444322111000 1233444444
Q ss_pred cccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHH
Q psy8503 181 VILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSIL 222 (421)
Q Consensus 181 viLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il 222 (421)
+-=.++.||..|+.+|+.++. ..+.+.|++||..|...+..|
T Consensus 189 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp GGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 444578999999999999863 566677777777776655543
No 31
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.15 E-value=0.03 Score=58.61 Aligned_cols=189 Identities=12% Similarity=0.154 Sum_probs=105.8
Q ss_pred CCCCchhHHHHHHHHh---hccCCc---chHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhH----hHHHHHH
Q psy8503 2 ISDSNRSIATLAITTL---LKTGSE---SSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHA----VLMNFLS 71 (421)
Q Consensus 2 I~DsNrsiatlAittL---LKTG~E---~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~----~~l~FL~ 71 (421)
++|++..+-..|+.+| ++..+. ..++.+++.+-..+++=..+-+..+.+++-.|+..+|.... .++.++.
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~ 262 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYML 262 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 3455655544454444 333222 24567777777777776667888899999999999987533 3455666
Q ss_pred HHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhh------ChhhHHHHHHhhhhhc-
Q psy8503 72 AMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEE------NPEAKETGLAHLCEFI- 144 (421)
Q Consensus 72 ~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~------~p~~ke~~L~~LcefI- 144 (421)
+.+++.. .+-+...++.+..+.+. .+..-...+..|.+.+
T Consensus 263 ~~~~~~~---------------------------------~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~ 309 (852)
T 4fdd_A 263 QRTQDQD---------------------------------ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309 (852)
T ss_dssp HHHTCSS---------------------------------HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTS
T ss_pred HHccCCc---------------------------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcC
Confidence 6655432 11222333333332211 0111112333332222
Q ss_pred --------------c---------cCcchHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh
Q psy8503 145 --------------E---------DCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA 201 (421)
Q Consensus 145 --------------E---------Dce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~ 201 (421)
| ++.....+.+.|..|....|..--| ..+.++...+-=+++.+|.+|+.+|+.++.
T Consensus 310 ~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 310 YSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp CCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred CcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 1 1122344555666555443321111 234444443334688999999999999875
Q ss_pred ------------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 202 ------------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 202 ------------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
+++.|++..||..|...+.-+..
T Consensus 389 ~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 389 GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp TTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77899999999999877765543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.00 E-value=0.038 Score=46.97 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHH
Q psy8503 185 NATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSIL 222 (421)
Q Consensus 185 n~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il 222 (421)
++.||..|+.+|.+++. ..+.++|.+||.+|...+..|
T Consensus 151 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45566666666666543 444555555555555544433
No 33
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.93 E-value=0.063 Score=50.24 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=30.5
Q ss_pred CchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 184 ENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
+++.||.+|+.+|..++. .++.|.|++||..|.-++..+.
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 467899999999988874 3456889999988876555554
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.88 E-value=0.23 Score=48.92 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=41.2
Q ss_pred CchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHhhhh
Q psy8503 184 ENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQDYI 234 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~~i 234 (421)
+++.||..|+.+|+.++. .++.+.+.+||..|...+..|...++...+.++
T Consensus 311 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 380 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 380 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 578899999999999874 678889999999999999888766555555444
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.44 E-value=0.15 Score=49.97 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=40.1
Q ss_pred cCchhHHHHHHHHHHHhHh-------------------hhcCCC-ChhhhhhHHHHHHHHhhhcHHHHhhhhc
Q psy8503 183 LENATVRAAAVTAMAQFGA-------------------LCQMDG-DDEVRDRATYYHSILASQNKQLIQDYII 235 (421)
Q Consensus 183 LEn~~VRaAAv~aLakf~~-------------------r~~~D~-DDEVRDRA~~yl~il~~~~~~~~~~~i~ 235 (421)
=.++.||..|+.+|+.++. .++.++ ++.||..|...+.-|...+......++.
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~ 369 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN 369 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3567899999999998875 566777 8999999998888886655554444443
No 36
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.28 E-value=0.22 Score=54.23 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhhccC----CcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchh-HhHHHHHHHHHhhcc-cc
Q psy8503 7 RSIATLAITTLLKTG----SESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKH-AVLMNFLSAMLRDEG-VF 80 (421)
Q Consensus 7 rsiatlAittLLKTG----~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~-~~~l~FL~~~Lr~eG-vf 80 (421)
|..|+-.+...++.. .+.+.+.++..+-..+.+=+.+-+-..+.++..+..+.|..+ ..++..|...|.++- ..
T Consensus 23 R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~v 102 (1230)
T 1u6g_C 23 RFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL 102 (1230)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred HHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 444444454555443 345677888888888776666677788888888888887743 346677777765533 11
Q ss_pred cccc-ceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHh--hChhhHHHHHHhhhhhcccCc------chH
Q psy8503 81 RGGI-DVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIE--ENPEAKETGLAHLCEFIEDCE------HTS 151 (421)
Q Consensus 81 rgg~-dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~--~~p~~ke~~L~~LcefIEDce------~~~ 151 (421)
|.+. ..| +.++-..+..- ..+...-.+-..++..++..+. ..++.++.++..|++.++++. +..
T Consensus 103 R~~a~~~L--~~i~~~l~~~~-----~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ 175 (1230)
T 1u6g_C 103 RDISSIGL--KTVIGELPPAS-----SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS 175 (1230)
T ss_dssp HHHHHHHH--HHHHHHCC----------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHH
T ss_pred HHHHHHHH--HHHHHhCCCcc-----cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 1110 000 11111111000 0000112355677777777775 556778888888887776542 122
Q ss_pred HHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh----------------hhcCCCChhhhhhH
Q psy8503 152 LAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA----------------LCQMDGDDEVRDRA 215 (421)
Q Consensus 152 l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~----------------r~~~D~DDEVRDRA 215 (421)
+...++..|. =+++.||.+|+.||+.++. ....+.++.+|..|
T Consensus 176 ll~~l~~~L~---------------------~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 176 ILTCLLPQLT---------------------SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHHGGGGG---------------------CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence 2223333332 1346899999999999886 11223345677777
Q ss_pred HHHHHHH
Q psy8503 216 TYYHSIL 222 (421)
Q Consensus 216 ~~yl~il 222 (421)
.-.+..+
T Consensus 235 ~~~l~~l 241 (1230)
T 1u6g_C 235 IQCIAAI 241 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6444444
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.16 E-value=0.18 Score=51.42 Aligned_cols=171 Identities=14% Similarity=0.142 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHh-CCc-hhHhHHHHHHHHHhhc-c-cccc-ccceeeehhhhcccCCcc
Q psy8503 26 VDRLMKQIATFVSEISDEFKIVVVEAIRALCLK-FPR-KHAVLMNFLSAMLRDE-G-VFRG-GIDVLVRSKLAVSADTGV 100 (421)
Q Consensus 26 vdrL~kqI~~fmseisdefKi~vv~ai~~Lc~k-fp~-K~~~~l~FL~~~Lr~e-G-vfrg-g~dvL~rAkLal~~~~~v 100 (421)
.+.+-+.+-..+.+=+..-+-.+.+++..+... ||. .|..++.+|...+..+ . ..|. +..+| ..+.-.-+...
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l--~~l~~~~~~~~ 170 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL--GYMCESADPQS 170 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH--HHHHHTSSTTS
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHH--HHHHHcCChhh
Confidence 333333444444333333444556666666554 684 8999999999888754 1 0011 10000 01110000000
Q ss_pred eEEEEEecCcchhhHHhHHHHHHHHHhh---ChhhHHHHHHhhhhhcccCcch---HH-HHHHHHHhcCCCCCCCCCccc
Q psy8503 101 TMQLTVRSTSGLEYKASIADTIITIIEE---NPEAKETGLAHLCEFIEDCEHT---SL-AVRILHLLGKEGPRAKQPSKY 173 (421)
Q Consensus 101 tm~l~vRs~~~~~~K~~ivd~i~~ii~~---~p~~ke~~L~~LcefIEDce~~---~l-~~rIL~~LG~egp~t~~P~ky 173 (421)
| --..+...++..+...+.. .++.|..++..|+.+++-.+.. .. ...++..|.
T Consensus 171 ------~--~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~------------ 230 (861)
T 2bpt_A 171 ------Q--ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC------------ 230 (861)
T ss_dssp ------S--TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH------------
T ss_pred ------h--HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHH------------
Confidence 0 0123556677776666643 4667777777766654321100 00 011222221
Q ss_pred eeEEeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 174 IRFIYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 174 IR~IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
..+-=+++.+|.+|+.+|..++. .++.|.|++||-.|.-++..+-
T Consensus 231 -----~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 231 -----EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp -----HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -----HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 11222568999999999988874 4677999999999986665553
No 38
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.63 E-value=0.29 Score=54.74 Aligned_cols=43 Identities=30% Similarity=0.173 Sum_probs=38.6
Q ss_pred cCchhHHHHHHHHHHHhHh------------hhcCCCChhhhhhHHHHHHHHhhh
Q psy8503 183 LENATVRAAAVTAMAQFGA------------LCQMDGDDEVRDRATYYHSILASQ 225 (421)
Q Consensus 183 LEn~~VRaAAv~aLakf~~------------r~~~D~DDEVRDRA~~yl~il~~~ 225 (421)
=+++.||-+|.-||+.+++ +.+.|.|++||-.|.+.+.++..+
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 3789999999999999865 889999999999999999988765
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.59 E-value=1.3 Score=42.41 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=32.4
Q ss_pred CchhHHHHHHHHHHHhHh----------------hhcCCCChhhhhhHHHHHHHHhhhcH
Q psy8503 184 ENATVRAAAVTAMAQFGA----------------LCQMDGDDEVRDRATYYHSILASQNK 227 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~----------------r~~~D~DDEVRDRA~~yl~il~~~~~ 227 (421)
.++.+|..|+.+|.+++. +.+.++|++||..|...+.-|...++
T Consensus 239 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 239 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred CChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 356777777888777653 56678899999999888877765443
No 40
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.22 E-value=0.22 Score=50.92 Aligned_cols=41 Identities=24% Similarity=0.139 Sum_probs=33.4
Q ss_pred CchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 184 ENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
.++.+|.+|+.+|+.++. .++.|++..||.+|...+.-+-.
T Consensus 378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 678899999999987653 67799999999999877665544
No 41
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.16 E-value=0.03 Score=45.67 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=19.5
Q ss_pred CchhHHHHHHHHHHHhHh--------hhcCCCChhhhhhHHH
Q psy8503 184 ENATVRAAAVTAMAQFGA--------LCQMDGDDEVRDRATY 217 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~--------r~~~D~DDEVRDRA~~ 217 (421)
+++.||.+|+.+|++++. ..+.|+|..||..|..
T Consensus 85 ~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~vr~~A~~ 126 (131)
T 1te4_A 85 DSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVN 126 (131)
T ss_dssp CCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345666666666666654 4455666666655543
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.89 E-value=0.25 Score=50.34 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchh
Q psy8503 27 DRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKH 63 (421)
Q Consensus 27 drL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~ 63 (421)
+-+++.+...+++-..+.|..+++.+..++.++|...
T Consensus 223 ~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777766667788889999999999988643
No 43
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=93.75 E-value=0.022 Score=54.90 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=58.7
Q ss_pred EEEEEEeeeecc--eeEEEEEeeCCCCCc-ccceeecccccccccc--CCChHHHHhhhcccCCcccceeeEeccCcccH
Q psy8503 332 RDLRSVFHSYAV--SMRRQLDVHSASGVG-LEDLEISLSDQMAKVN--KPNFLALWEEAETDESMNEMEDTFCLSKMESI 406 (421)
Q Consensus 332 L~V~~vKHif~~--hiVlQfdvdp~tg~g-lEdlei~~~D~i~~~~--~~nF~~~We~l~~~~~~~e~~~tf~L~~~~sl 406 (421)
+.|.|.+ .|.+ -+.+.|.|. .+-.- -=.|.|.+.|||+|.. .++|.+.|+.++.++ .|..++|.+ ..+..
T Consensus 122 i~v~~~~-pF~~~P~l~isf~~~-g~~~~~~LkLPi~~~kf~~p~~~~~~~F~~rWkql~~~~--~E~q~v~~~-~~~~~ 196 (273)
T 3hs8_A 122 VNIECIS-DFTEAPVLNIQFRYG-GTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQ--QEVQNIFKA-KHPMD 196 (273)
T ss_dssp EEEEECS-CCCCCCEEEEEEEET-TEEEEEEEECCCCGGGGEEECCCCHHHHHHHHHHCCSGG--GEEEEEEEC-SSCCC
T ss_pred EEEEEcc-cccCCCEEEEEEEEC-CeEEEEEEecceehhheeccccCCHHHHHHHHHhcCCCC--ceEEEEecC-CCCCC
Confidence 3666765 6654 455566651 10011 1145778889999988 669999999998333 688899988 66667
Q ss_pred HHHHHHhhcccCC
Q psy8503 407 QEAVASILLPFPR 419 (421)
Q Consensus 407 ~~Av~~i~~~fg~ 419 (421)
.+++++++.-||+
T Consensus 197 ~~~v~~~l~~lg~ 209 (273)
T 3hs8_A 197 TEITKAKIIGFGS 209 (273)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCe
Confidence 8899999998887
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.37 E-value=0.3 Score=41.40 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=39.6
Q ss_pred EEeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHH
Q psy8503 176 FIYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQ 228 (421)
Q Consensus 176 ~IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~ 228 (421)
.+.+-+-=.++.||..|+.+|++++. +.+.++|++||..|...+..|-..++.
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 33333333578899999999999874 678888999999999888877655344
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=93.28 E-value=0.59 Score=47.77 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=30.6
Q ss_pred CchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 184 ENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
+++.||.+|+.+|..++. .++.|.|++||..|.-++..+.
T Consensus 229 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 467899999999998774 4567889999999875554443
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.20 E-value=1.1 Score=42.62 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=94.3
Q ss_pred hhccCCcchHHHHHHHHHHhhh------------hhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhcccccccc
Q psy8503 17 LLKTGSESSVDRLMKQIATFVS------------EISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGI 84 (421)
Q Consensus 17 LLKTG~E~svdrL~kqI~~fms------------eisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg~ 84 (421)
+++ |..+-+++ ||.+-..+. +.+.+-|+...+.+..|+...++... +...| |.
T Consensus 19 ~~~-~~~d~~~~-mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~---------~~~~G----~l 83 (296)
T 1xqr_A 19 HMR-GQRGEVEQ-MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD---------FCQLS----GM 83 (296)
T ss_dssp -CC-SCHHHHHH-HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHH---------HHHTT----HH
T ss_pred HHc-CCCCHHHH-HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHH---------HHHcC----CH
Confidence 344 44555554 455555544 34557999999999999964333222 12233 34
Q ss_pred ceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCC
Q psy8503 85 DVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEG 164 (421)
Q Consensus 85 dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~eg 164 (421)
+.|+. || +.++ .-+.|...+.+|-.+...+|+.++.++. |. ..-.++.+|...
T Consensus 84 ~~Lv~-~l-L~s~-------------~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--------~g---~l~~Ll~LL~~~- 136 (296)
T 1xqr_A 84 HLLVG-RY-LEAG-------------AAGLRWRAAQLIGTCSQNVAAIQEQVLG--------LG---ALRKLLRLLDRD- 136 (296)
T ss_dssp HHHHH-TT-TTCS-------------SHHHHHHHHHHHHHHHTTCHHHHHHHHH--------TT---HHHHHHHHHHHC-
T ss_pred HHHHH-HH-HcCC-------------CHHHHHHHHHHHHHHHhCCHHHHHHHHH--------CC---CHHHHHHHHccC-
Confidence 43333 22 1222 4678888999999988888988876542 11 112233333211
Q ss_pred CCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhh
Q psy8503 165 PRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQ 225 (421)
Q Consensus 165 p~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~ 225 (421)
| ++.||..|+.||+.+.. +++.+.|..||-+|...+.-|-.+
T Consensus 137 -----~--------------~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 137 -----A--------------CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp -----S--------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred -----C--------------CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1 46778888888877753 778889999999999888877665
Q ss_pred cHHHHh
Q psy8503 226 NKQLIQ 231 (421)
Q Consensus 226 ~~~~~~ 231 (421)
+++..+
T Consensus 198 ~~~~~~ 203 (296)
T 1xqr_A 198 HPEHKG 203 (296)
T ss_dssp CGGGHH
T ss_pred ChHHHH
Confidence 444333
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.54 Score=43.24 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=13.6
Q ss_pred hhcCCCChhhhhhHHHHHHHH
Q psy8503 202 LCQMDGDDEVRDRATYYHSIL 222 (421)
Q Consensus 202 r~~~D~DDEVRDRA~~yl~il 222 (421)
.|+.|.|.+||+.|..-+..+
T Consensus 198 ~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 198 QIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHH
Confidence 566777777777776544443
No 48
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=92.68 E-value=0.68 Score=45.97 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCCCCCC--CCCccceeEEeeccccCchhHHHHHHHHHHHhHhhhcCCCChhhhhhHH
Q psy8503 150 TSLAVRILHLLGKEGPRA--KQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRAT 216 (421)
Q Consensus 150 ~~l~~rIL~~LG~egp~t--~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~r~~~D~DDEVRDRA~ 216 (421)
+-..+.+|+++++-+|.. ....+|+.+|.+++-=-|+.|--.|+.++-.+. +.+..++.+|.
T Consensus 226 ~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~-----~~~~~~~~~a~ 289 (355)
T 3tjz_B 226 PFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLP-----GCSAKELAPAV 289 (355)
T ss_dssp HHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CC
T ss_pred hHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc-----CCCHHHHHHHH
Confidence 556678999888888875 456799999999988788889888888887542 23344555554
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.51 E-value=5.2 Score=35.23 Aligned_cols=162 Identities=10% Similarity=0.142 Sum_probs=90.0
Q ss_pred hhHHHHHHHHhhccC-C--cchHHHHHHHHHHhhh-hhcchhhHHHHHHHHHHHHhCCchh-HhHHHHHHHHHhhccccc
Q psy8503 7 RSIATLAITTLLKTG-S--ESSVDRLMKQIATFVS-EISDEFKIVVVEAIRALCLKFPRKH-AVLMNFLSAMLRDEGVFR 81 (421)
Q Consensus 7 rsiatlAittLLKTG-~--E~svdrL~kqI~~fms-eisdefKi~vv~ai~~Lc~kfp~K~-~~~l~FL~~~Lr~eGvfr 81 (421)
|--|..++..+++.+ . .....+++..+...+. |-.-.-.....+++..|+....... ...-.++...+..=|
T Consensus 32 R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~--- 108 (242)
T 2qk2_A 32 RKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK--- 108 (242)
T ss_dssp HHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc---
Confidence 455788899999873 2 2445677777666653 4222233367788888886654321 112223333333322
Q ss_pred cccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhc
Q psy8503 82 GGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLG 161 (421)
Q Consensus 82 gg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG 161 (421)
+. .-.-+.+...++..+++..+ -+..+..|.+.+.| ..+.+-..++.+||
T Consensus 109 --------------d~-------------~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~-~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 109 --------------EK-------------KPNVVTALREAIDAIYASTS--LEAQQESIVESLSN-KNPSVKSETALFIA 158 (242)
T ss_dssp --------------CC-------------CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred --------------CC-------------CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC-CChHHHHHHHHHHH
Confidence 11 23344556666666665433 24566677777766 35566666777666
Q ss_pred CCCCCC---CCCccc----eeEEeeccccCchhHHHHHHHHHHHhHh
Q psy8503 162 KEGPRA---KQPSKY----IRFIYNRVILENATVRAAAVTAMAQFGA 201 (421)
Q Consensus 162 ~egp~t---~~P~ky----IR~IyNRviLEn~~VRaAAv~aLakf~~ 201 (421)
.-.... .....| +.++..-+-=.++.||.+|..+|..++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 532111 011222 2233322222678999999999999886
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.34 E-value=3.7 Score=40.84 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=108.9
Q ss_pred HHHHHHHhhccCCcchHHHHHHH--HHHhhhhhc----chhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccc
Q psy8503 10 ATLAITTLLKTGSESSVDRLMKQ--IATFVSEIS----DEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGG 83 (421)
Q Consensus 10 atlAittLLKTG~E~svdrL~kq--I~~fmseis----defKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg 83 (421)
|+-++--||-......||.+++. |+.++.=+. .+-+.-...++.+++..-+.....+ -+.| +
T Consensus 96 a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v--------v~~G----a 163 (529)
T 3tpo_A 96 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV--------VDGG----A 163 (529)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH--------HHTT----H
T ss_pred HHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH--------HHCC----C
Confidence 34444455555666667766543 444444332 3345556677777775444332222 2333 3
Q ss_pred cceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHH-----HHhhhhhcccCcchHH------
Q psy8503 84 IDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETG-----LAHLCEFIEDCEHTSL------ 152 (421)
Q Consensus 84 ~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~-----L~~LcefIEDce~~~l------ 152 (421)
.+.|++ | +.+. ..+-+...+-++-.|....|+.|..+ +..|...+.++.....
T Consensus 164 ip~Lv~--L-L~s~-------------~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~ 227 (529)
T 3tpo_A 164 IPAFIS--L-LASP-------------HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 227 (529)
T ss_dssp HHHHHH--H-TTCS-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHH
T ss_pred HHHHHH--H-HcCC-------------CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHH
Confidence 333321 1 1222 56788888999999988889888765 4558888887765432
Q ss_pred -HHHHHHHhcCCCCCCCCC---ccceeEEeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCCh
Q psy8503 153 -AVRILHLLGKEGPRAKQP---SKYIRFIYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGDD 209 (421)
Q Consensus 153 -~~rIL~~LG~egp~t~~P---~kyIR~IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DD 209 (421)
++..|.-|-+........ ...+..+..-+--+++.|+..|..||+.++. .++.++|.
T Consensus 228 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~ 307 (529)
T 3tpo_A 228 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 307 (529)
T ss_dssp HHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh
Confidence 223333333321111110 1122333333334778899999999988765 67788888
Q ss_pred hhhhhHHHHHHHHhhhcHH
Q psy8503 210 EVRDRATYYHSILASQNKQ 228 (421)
Q Consensus 210 EVRDRA~~yl~il~~~~~~ 228 (421)
.|+..|...+..+-..++.
T Consensus 308 ~v~~~a~~aL~nl~~~~~~ 326 (529)
T 3tpo_A 308 PIVTPALRAIGNIVTGTDE 326 (529)
T ss_dssp HHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHHHccchH
Confidence 8888888777666554443
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.32 E-value=1 Score=43.28 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHhhhhhcccCcchHH---HHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh-----------
Q psy8503 136 GLAHLCEFIEDCEHTSL---AVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA----------- 201 (421)
Q Consensus 136 ~L~~LcefIEDce~~~l---~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~----------- 201 (421)
++..|.+++.+. ...+ +..+|.-|....|....-...+..+..-+-=+++.||..|..+|++++.
T Consensus 228 ~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 306 (529)
T 1jdh_A 228 GMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306 (529)
T ss_dssp HHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 456677777765 2333 3344444444443322222333333333334789999999999998865
Q ss_pred --------hhcCC--CChhhhhhHHHHHHHHhh
Q psy8503 202 --------LCQMD--GDDEVRDRATYYHSILAS 224 (421)
Q Consensus 202 --------r~~~D--~DDEVRDRA~~yl~il~~ 224 (421)
+.+.+ ++++||..|...+..|..
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 23332 336788888777776654
No 52
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=91.56 E-value=3.7 Score=41.79 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=31.0
Q ss_pred chhHHHHHHHHHHHhHh----------------hhcCCCChhhhhhHHHHHHHHhhhc
Q psy8503 185 NATVRAAAVTAMAQFGA----------------LCQMDGDDEVRDRATYYHSILASQN 226 (421)
Q Consensus 185 n~~VRaAAv~aLakf~~----------------r~~~D~DDEVRDRA~~yl~il~~~~ 226 (421)
++.+|..|+.+|.+++. +.+.++|++||..|...+.-|..++
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 56777778888877764 4567888999998887777665543
No 53
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.08 E-value=1.5 Score=46.90 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=65.7
Q ss_pred hhhHHhHHHHHHHHHhhChhhHHHHHHhhhhh------------cccCcchHHHHHHHHHhcCCCCCCCCCc-------c
Q psy8503 112 LEYKASIADTIITIIEENPEAKETGLAHLCEF------------IEDCEHTSLAVRILHLLGKEGPRAKQPS-------K 172 (421)
Q Consensus 112 ~~~K~~ivd~i~~ii~~~p~~ke~~L~~Lcef------------IEDce~~~l~~rIL~~LG~egp~t~~P~-------k 172 (421)
+..+++..+.+..+.+..++ ..+..+..| -+||.+.+-+...++-+...|-....|. .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred cCcHHHHHHHHHHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 34555666666666665552 223222222 2466667777777777743321111111 2
Q ss_pred ceeE----EeeccccC---chhHHHHHHHHHHHhHh---------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 173 YIRF----IYNRVILE---NATVRAAAVTAMAQFGA---------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 173 yIR~----IyNRviLE---n~~VRaAAv~aLakf~~---------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
...| +.+.+-=. ++.||++|.-+|++|+. +++.|++..||-+|...+.-|-+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 3232 33222223 88999999999999965 78888888999999988887644
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=90.63 E-value=1.6 Score=44.52 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=50.3
Q ss_pred HHHhhhhhcccCcchHH---HHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh-----------
Q psy8503 136 GLAHLCEFIEDCEHTSL---AVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA----------- 201 (421)
Q Consensus 136 ~L~~LcefIEDce~~~l---~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~----------- 201 (421)
++..|++++.+.. ..+ ++.+|.-|.+..+....-...|..+..-+-=+++.||..|..+|+.++.
T Consensus 225 ~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~ 303 (644)
T 2z6h_A 225 GMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303 (644)
T ss_dssp HHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667788887652 333 3445555555443322212222222222233678899999999988764
Q ss_pred --------hhcCC-CC-hhhhhhHHHHHHHHhh
Q psy8503 202 --------LCQMD-GD-DEVRDRATYYHSILAS 224 (421)
Q Consensus 202 --------r~~~D-~D-DEVRDRA~~yl~il~~ 224 (421)
+.+.+ .| ++||..|...+..|..
T Consensus 304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 23333 33 6888888877776643
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=90.61 E-value=2.1 Score=45.46 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=51.8
Q ss_pred HHHhhhhhcccCcchHHH---HHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh-----------
Q psy8503 136 GLAHLCEFIEDCEHTSLA---VRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA----------- 201 (421)
Q Consensus 136 ~L~~LcefIEDce~~~l~---~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~----------- 201 (421)
++..|.+++.+.. ..+. ..+|.-|....+....-...|..+..-+--+++.||..|+.+|++++.
T Consensus 361 ~l~~Ll~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~ 439 (780)
T 2z6g_A 361 GMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 439 (780)
T ss_dssp HHHHHGGGTTCSC-HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred hHHHHHHHHcCCc-hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3567888887763 3333 334444444433322222334444433444789999999999998865
Q ss_pred --------hhcCC-CC-hhhhhhHHHHHHHHhh
Q psy8503 202 --------LCQMD-GD-DEVRDRATYYHSILAS 224 (421)
Q Consensus 202 --------r~~~D-~D-DEVRDRA~~yl~il~~ 224 (421)
+.+.+ .+ ++||..|...+..|..
T Consensus 440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 33333 23 4899988877776654
No 56
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=90.00 E-value=4.6 Score=43.58 Aligned_cols=148 Identities=21% Similarity=0.293 Sum_probs=101.0
Q ss_pred cchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhH-HHHHHHHHhhccccccccceeeehhhhcccCCcce
Q psy8503 23 ESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVL-MNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVT 101 (421)
Q Consensus 23 E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~-l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vt 101 (421)
+++|++|..++.+ +-+. |=+--.+.++|++..+||..-... |.-|-++|+..+ .
T Consensus 20 ~etI~~L~~Rl~~--~tl~-eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~-----------------~----- 74 (651)
T 3grl_A 20 AETIQKLCDRVAS--STLL-DDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR-----------------S----- 74 (651)
T ss_dssp HHHHHHHHHHHHH--CCSH-HHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT-----------------T-----
T ss_pred hhHHHHHHHHHhh--ccch-hHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc-----------------c-----
Confidence 5789999999986 2333 347788899999999999875443 677888998877 1
Q ss_pred EEEEEecCcchhhHHhHHHHHHHHHhhChhh----------HHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCc
Q psy8503 102 MQLTVRSTSGLEYKASIADTIITIIEENPEA----------KETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPS 171 (421)
Q Consensus 102 m~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~----------ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~ 171 (421)
..+.=+.+.+++..++...++. .+.++.+-=.||.+.+.-.+ ++.+|..
T Consensus 75 ---------D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~---Ll~lL~~--------- 133 (651)
T 3grl_A 75 ---------DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTL---LLSLLEE--------- 133 (651)
T ss_dssp ---------CHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHH---HHHHTTC---------
T ss_pred ---------cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHH---HHHHhcC---------
Confidence 4577788889888877644432 23345555567777665554 4455532
Q ss_pred cceeEEeeccccCchhHHHHHHHHHHHhHh---------------------hhcCCCChhhhhhHHHHHHHHhhhcHH
Q psy8503 172 KYIRFIYNRVILENATVRAAAVTAMAQFGA---------------------LCQMDGDDEVRDRATYYHSILASQNKQ 228 (421)
Q Consensus 172 kyIR~IyNRviLEn~~VRaAAv~aLakf~~---------------------r~~~D~DDEVRDRA~~yl~il~~~~~~ 228 (421)
++-.||-.|++.|.-+.. ..+.|.-+-+|..|.+.+.-|..++++
T Consensus 134 ------------~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 134 ------------FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred ------------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 233455555555555443 678889999999999999888877655
No 57
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.91 E-value=0.15 Score=41.45 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=34.6
Q ss_pred CchhHHHHHHHHHHHhHh--------hhcCCCChhhhhhHHHHHHHHh
Q psy8503 184 ENATVRAAAVTAMAQFGA--------LCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~--------r~~~D~DDEVRDRA~~yl~il~ 223 (421)
+++.||.+|+.+|++++. .++.|+|..||..|...+.-+.
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 467999999999999975 7889999999999998887664
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=89.71 E-value=6 Score=41.96 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHhHh----------------hhcCCCChhhhhhHHHHHHHHhhhcH
Q psy8503 185 NATVRAAAVTAMAQFGA----------------LCQMDGDDEVRDRATYYHSILASQNK 227 (421)
Q Consensus 185 n~~VRaAAv~aLakf~~----------------r~~~D~DDEVRDRA~~yl~il~~~~~ 227 (421)
++.++..|..+|++++. ..+.+.|.+||..|...+..|...+.
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45677778888888863 56788999999999988887766543
No 59
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=88.25 E-value=12 Score=37.15 Aligned_cols=186 Identities=13% Similarity=0.133 Sum_probs=96.0
Q ss_pred HHHHHHHhhccCCcchHHHHHHH--HHHhhhhhc----chhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccc
Q psy8503 10 ATLAITTLLKTGSESSVDRLMKQ--IATFVSEIS----DEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGG 83 (421)
Q Consensus 10 atlAittLLKTG~E~svdrL~kq--I~~fmseis----defKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg 83 (421)
||-++--||-....-.||.+++. |+.++.=+. .+-+.-...++.+|+.--|...+.+ .+.| +
T Consensus 77 a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v--------v~~G----a 144 (510)
T 3ul1_B 77 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV--------VDGG----A 144 (510)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH--------HHTT----H
T ss_pred HHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH--------HHCC----C
Confidence 44555555655555568887764 666655453 2334456667777765433322222 2233 2
Q ss_pred cceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHH-----HHhhhhhcccCcchHH------
Q psy8503 84 IDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETG-----LAHLCEFIEDCEHTSL------ 152 (421)
Q Consensus 84 ~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~-----L~~LcefIEDce~~~l------ 152 (421)
.+.|++. +.++ ..+-+...+.++-.|....|+.|+.. +..|...+.+......
T Consensus 145 Ip~Lv~l---L~s~-------------~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~ 208 (510)
T 3ul1_B 145 IPAFISL---LASP-------------HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 208 (510)
T ss_dssp HHHHHHH---TTCS-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHH
T ss_pred HHHHHHH---HcCC-------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHH
Confidence 2222110 1112 56778888888888887788877665 4557777766554321
Q ss_pred -HHHHHHHhcCCCCCCCCC----ccceeEEeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCC
Q psy8503 153 -AVRILHLLGKEGPRAKQP----SKYIRFIYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGD 208 (421)
Q Consensus 153 -~~rIL~~LG~egp~t~~P----~kyIR~IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~D 208 (421)
+...|.-+-+.... ..+ ...+..+.+-+-=+++.||..|..+|+.++. .++.+.+
T Consensus 209 ~a~~~L~nl~~~~~~-~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 209 NLTWTLSNLCRNKNP-APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287 (510)
T ss_dssp HHHHHHHHHHCCCSS-CCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhcccc-hhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC
Confidence 22223323222111 011 1112222222233566777777777776653 4556666
Q ss_pred hhhhhhHHHHHHHHhh
Q psy8503 209 DEVRDRATYYHSILAS 224 (421)
Q Consensus 209 DEVRDRA~~yl~il~~ 224 (421)
..||..|...+..+-.
T Consensus 288 ~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHhhc
Confidence 6666666655554433
No 60
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.89 E-value=4.2 Score=36.99 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=48.4
Q ss_pred ChhhHHHHHHhhhhhcccCcchHHHH-HHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHh----Hh--
Q psy8503 129 NPEAKETGLAHLCEFIEDCEHTSLAV-RILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQF----GA-- 201 (421)
Q Consensus 129 ~p~~ke~~L~~LcefIEDce~~~l~~-rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf----~~-- 201 (421)
.+..|+.++.-|..++|-|-...... .|+..|+ .+ ||.||++++..|.++ |.
T Consensus 116 k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~-----~K----------------npkv~~~~l~~l~~~l~~fg~~~ 174 (278)
T 4ffb_C 116 RATTKTQSMSCILSLCGLDTSITQSVELVIPFFE-----KK----------------LPKLIAAAANCVYELMAAFGLTN 174 (278)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGG-----CS----------------CHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cc----------------CHHHHHHHHHHHHHHHHHhCCCc
Confidence 36678888999999998887644433 3333332 23 457888888777653 22
Q ss_pred ---------------hhcCCCChhhhhhHHHHH
Q psy8503 202 ---------------LCQMDGDDEVRDRATYYH 219 (421)
Q Consensus 202 ---------------r~~~D~DDEVRDRA~~yl 219 (421)
.++.|.|.+||+-|.-.+
T Consensus 175 ~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp CCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 688999999999998433
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.89 E-value=8.8 Score=35.11 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=57.7
Q ss_pred hHHhHHHHHHHHHhhC-hh----hHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCC---------CccceeEEee
Q psy8503 114 YKASIADTIITIIEEN-PE----AKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQ---------PSKYIRFIYN 179 (421)
Q Consensus 114 ~K~~ivd~i~~ii~~~-p~----~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~---------P~kyIR~IyN 179 (421)
-+.+...++..+++.. |. .-+..+..|.+++..- -+.+-...|.+|++-...++. |..+|..+-+
T Consensus 120 V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~ 198 (249)
T 2qk1_A 120 VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198 (249)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 3355556666666655 21 1346788888888665 568888888888866555443 3456666666
Q ss_pred ccccCchhHHHHHHHHHHH
Q psy8503 180 RVILENATVRAAAVTAMAQ 198 (421)
Q Consensus 180 RviLEn~~VRaAAv~aLak 198 (421)
-+-=.++.||.+|+.+|+.
T Consensus 199 ~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 199 IVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHH
Confidence 6666788899999999986
No 62
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=84.17 E-value=17 Score=36.17 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.5
Q ss_pred cCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHhhh
Q psy8503 183 LENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQDY 233 (421)
Q Consensus 183 LEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~~ 233 (421)
-.++.||..|+.+|+.++. ..+.+.+++||..|...+.-|..++.......
T Consensus 285 ~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v 354 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 3567899999999998865 67789999999999998888876655544433
No 63
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=81.14 E-value=11 Score=36.54 Aligned_cols=26 Identities=19% Similarity=0.551 Sum_probs=16.1
Q ss_pred HHHhhhhh---cchhhHHHHHHHHHHHHh
Q psy8503 33 IATFVSEI---SDEFKIVVVEAIRALCLK 58 (421)
Q Consensus 33 I~~fmsei---sdefKi~vv~ai~~Lc~k 58 (421)
|+.++.=+ +.+.+...+.++++|+..
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~ 157 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWR 157 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Confidence 44444433 446677777788888753
No 64
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=81.07 E-value=8.9 Score=42.04 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHHHHhHh--------------------hhcCCCChhhhhhHHHHHHHHhhhcHH
Q psy8503 184 ENATVRAAAVTAMAQFGA--------------------LCQMDGDDEVRDRATYYHSILASQNKQ 228 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~--------------------r~~~D~DDEVRDRA~~yl~il~~~~~~ 228 (421)
++..+|.+|..||+.++. +.+.++|++||.||...+.-|-..+++
T Consensus 677 ~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e 741 (810)
T 3now_A 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741 (810)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 567899999999999986 667789999999999888766554444
No 65
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=80.83 E-value=2.7 Score=40.01 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=58.4
Q ss_pred hhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCcccee-EEeeccccCchhHHHHHHHHHHHhHh--------
Q psy8503 131 EAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIR-FIYNRVILENATVRAAAVTAMAQFGA-------- 201 (421)
Q Consensus 131 ~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR-~IyNRviLEn~~VRaAAv~aLakf~~-------- 201 (421)
+.|..+|..|.+++|+-+...- + .-+|.-. ..+. .+- =.++.||..|+.+|+.++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~---~-~~~G~l~-------~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~ 119 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAAD---F-CQLSGMH-------LLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQ 119 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHH---H-HHTTHHH-------HHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHH---H-HHcCCHH-------HHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6888999999999997663322 1 1222210 0111 111 1367899999999999875
Q ss_pred -----------hhcC-CCChhhhhhHHHHHHHHhhhcHHHHhhhhc
Q psy8503 202 -----------LCQM-DGDDEVRDRATYYHSILASQNKQLIQDYII 235 (421)
Q Consensus 202 -----------r~~~-D~DDEVRDRA~~yl~il~~~~~~~~~~~i~ 235 (421)
+++. |.+++||..|.+.+.-|-.+++...+.++.
T Consensus 120 vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~ 165 (296)
T 1xqr_A 120 VLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR 165 (296)
T ss_dssp HHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 5565 568999999999998886555544444443
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=79.10 E-value=6.8 Score=37.51 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=60.4
Q ss_pred hhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHh---cCCCCCCCCCccceeEEeeccccCchhHH
Q psy8503 113 EYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLL---GKEGPRAKQPSKYIRFIYNRVILENATVR 189 (421)
Q Consensus 113 ~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~L---G~egp~t~~P~kyIR~IyNRviLEn~~VR 189 (421)
+-|=.+--++..|.+.+|+.--.+...+.-..++..-.. -.-.|+|+ |..+|+.-+| |..-+++=+.=.|..||
T Consensus 122 kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~D-kl~aLnFi~alGen~~~yv~P--fLprL~aLL~D~deiVR 198 (253)
T 2db0_A 122 KTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNRED-KLTALNFIEAMGENSFKYVNP--FLPRIINLLHDGDEIVR 198 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHH-HHHHHHHHHTCCTTTHHHHGG--GHHHHHGGGGCSSHHHH
T ss_pred cceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHhccCccccCc--chHHHHHHHcCcchhhh
Confidence 445566677888899999987777777777777766332 22345554 5666655555 44455565666799999
Q ss_pred HHHHHHHHHhHh
Q psy8503 190 AAAVTAMAQFGA 201 (421)
Q Consensus 190 aAAv~aLakf~~ 201 (421)
|.||.+|.++|.
T Consensus 199 aSaVEtL~~lA~ 210 (253)
T 2db0_A 199 ASAVEALVHLAT 210 (253)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 67
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=77.37 E-value=25 Score=34.92 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.8
Q ss_pred cCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHhhhh
Q psy8503 183 LENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQDYI 234 (421)
Q Consensus 183 LEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~~i 234 (421)
=+++.|+..|+.+|+.++. .++.+.+++||..|...+.-|..+++......+
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~ 374 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 374 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3578899999999998865 678899999999999988888766555444433
No 68
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=76.67 E-value=1.4 Score=46.50 Aligned_cols=127 Identities=10% Similarity=0.124 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHhCCch-hHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHH
Q psy8503 44 FKIVVVEAIRALCLKFPRK-HAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTI 122 (421)
Q Consensus 44 fKi~vv~ai~~Lc~kfp~K-~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i 122 (421)
|....-+.++.+|..+|.. -..+++++...|..-. +......+.+.+-++
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~-----------------------------~~~~w~~~eaal~al 473 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE-----------------------------EPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------------------------CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC-----------------------------CCCchHHHHHHHHHH
Confidence 4566677788888777743 2345667766663210 001345555666666
Q ss_pred HHHHhhChh----hHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEeeccc--cCchhHHHHHHHHH
Q psy8503 123 ITIIEENPE----AKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVI--LENATVRAAAVTAM 196 (421)
Q Consensus 123 ~~ii~~~p~----~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRvi--LEn~~VRaAAv~aL 196 (421)
-.+.+..++ .-..++..|.++-+ +++.+..+++..||+.........+|+.-+.|.++ |.++.||.+|..||
T Consensus 474 ~~i~~~~~~~~~~~l~~l~~~l~~l~~--~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~~A~~al 551 (963)
T 2x19_B 474 QSIAETIDVNYSDVVPGLIGLIPRISI--SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTL 551 (963)
T ss_dssp HHHTTSCCSSCCSHHHHHHHHGGGSCC--CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHhhcCchhhHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 665554432 22334444433333 47778888888888765432222256665555443 45689999999999
Q ss_pred HHhHh
Q psy8503 197 AQFGA 201 (421)
Q Consensus 197 akf~~ 201 (421)
.+|+.
T Consensus 552 ~~l~~ 556 (963)
T 2x19_B 552 KKICR 556 (963)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=75.41 E-value=44 Score=32.57 Aligned_cols=136 Identities=13% Similarity=0.183 Sum_probs=75.8
Q ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHh--HHHHHHHH---HhhccccccccceeeehhhhcccCCcceEE
Q psy8503 29 LMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAV--LMNFLSAM---LRDEGVFRGGIDVLVRSKLAVSADTGVTMQ 103 (421)
Q Consensus 29 L~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~--~l~FL~~~---Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~ 103 (421)
-+..+-.+++|=...+|.=++-++..+-..-|.+-+. +-++|-.. ++++.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d------------------------- 88 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN------------------------- 88 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-------------------------
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-------------------------
Confidence 3445556666666667776777777777666665433 22222222 22222
Q ss_pred EEEecCcchhhHHhHHHHHHHHHhhChhhHH---HHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEeec
Q psy8503 104 LTVRSTSGLEYKASIADTIITIIEENPEAKE---TGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR 180 (421)
Q Consensus 104 l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke---~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNR 180 (421)
-.-.=.-+.++-.+++.+|=.++ .....|-+-|. -.-.-+.-.+...||.- +...|.+=++-+.||
T Consensus 89 --------Ekval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~s 157 (265)
T 3b2a_A 89 --------EKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL--QPLEDSKLVRTYINE 157 (265)
T ss_dssp --------HHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC--CcccchHHHHHHHHH
Confidence 11111234444455555553222 23333445555 33344444455555555 555666777777778
Q ss_pred cccC--chhHHHHHHHHHHHhHh
Q psy8503 181 VILE--NATVRAAAVTAMAQFGA 201 (421)
Q Consensus 181 viLE--n~~VRaAAv~aLakf~~ 201 (421)
++ + |..|.+||+.+|-.++.
T Consensus 158 Ll-~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 158 LV-VSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HH-TCSSHHHHHHHHHHHHHHGG
T ss_pred HH-hCCChhHHHHHHHHHHHhhc
Confidence 77 5 57899999999999998
No 70
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=72.93 E-value=7.1 Score=41.48 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=66.8
Q ss_pred hhHHhHHHHHHHHHhhCh-hhHHHHHHhhhhhc-------ccCcchHHHHHHHHHhcCCCCCCCCCccceeEEee---cc
Q psy8503 113 EYKASIADTIITIIEENP-EAKETGLAHLCEFI-------EDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYN---RV 181 (421)
Q Consensus 113 ~~K~~ivd~i~~ii~~~p-~~ke~~L~~LcefI-------EDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyN---Rv 181 (421)
.|.++..+.+.++....| +.-...+..+-+.+ .||..-+-+...+.-+++..+...+ .++..|.+ ++
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--~~l~~l~~~l~~l 513 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--RQIPRLMRVLAEI 513 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHhc
Confidence 466777777777776665 22223333333333 4677777777778888766555443 34444444 11
Q ss_pred ccC--chhHHHHHHHHHHHhHh-----------------hhcCCCChhhhhhHHHHHHHHhhh
Q psy8503 182 ILE--NATVRAAAVTAMAQFGA-----------------LCQMDGDDEVRDRATYYHSILASQ 225 (421)
Q Consensus 182 iLE--n~~VRaAAv~aLakf~~-----------------r~~~D~DDEVRDRA~~yl~il~~~ 225 (421)
--+ ++.||.+|+.+|++|+. +++ | ..|+.+|...+.-|-+.
T Consensus 514 ~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 514 PYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRD 573 (971)
T ss_dssp CTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence 113 89999999999999887 555 4 77999999777766544
No 71
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.24 E-value=21 Score=38.71 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCC----ccceeEEeeccccCchhHHHHHHHHHHHhHhh
Q psy8503 137 LAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQP----SKYIRFIYNRVILENATVRAAAVTAMAQFGAL 202 (421)
Q Consensus 137 L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P----~kyIR~IyNRviLEn~~VRaAAv~aLakf~~r 202 (421)
+..+...+++.+...+...+|..|+.-..-..-+ ...+.++++.. +.++.+|.+|+.+|..+..+
T Consensus 196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~-l~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF-MTSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHH-HHSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHh-CCCHhHHHHHHHHHHHHHhC
Confidence 3334444555555556666666665432211100 12444444443 36899999999999887764
No 72
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=70.02 E-value=14 Score=39.47 Aligned_cols=130 Identities=7% Similarity=0.032 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHhCCchhH-hHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHH
Q psy8503 43 EFKIVVVEAIRALCLKFPRKHA-VLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADT 121 (421)
Q Consensus 43 efKi~vv~ai~~Lc~kfp~K~~-~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~ 121 (421)
..+....+.+..||.+|+++.- .++.|+...|.+-. ++ .......|.+.+-+
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~-----------------~~----------~~~~w~~reaal~a 428 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYM-----------------SD----------PSKNWKFKDLYIYL 428 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-----------------C--------------CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhc-----------------cC----------cchhHHHHHHHHHH
Confidence 3566778889999999995533 57888888887532 00 00145677777777
Q ss_pred HHHHHhhC--h-----------hhHHHHHHhhhhhcccC--cchHHHHHHHHHhcCCCCCCCCCccceeEEe----eccc
Q psy8503 122 IITIIEEN--P-----------EAKETGLAHLCEFIEDC--EHTSLAVRILHLLGKEGPRAKQPSKYIRFIY----NRVI 182 (421)
Q Consensus 122 i~~ii~~~--p-----------~~ke~~L~~LcefIEDc--e~~~l~~rIL~~LG~egp~t~~P~kyIR~Iy----NRvi 182 (421)
+-.+.+.. + +...-...++.-.+.|. .++.+..+.+..||+....- |..|..-++ +.+.
T Consensus 429 lgaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~ 506 (960)
T 1wa5_C 429 FTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQ 506 (960)
T ss_dssp HHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhC
Confidence 77765421 1 12111223444445665 48999999999999876543 234544444 3333
Q ss_pred cCchhHHHHHHHHHHHhHh
Q psy8503 183 LENATVRAAAVTAMAQFGA 201 (421)
Q Consensus 183 LEn~~VRaAAv~aLakf~~ 201 (421)
=+++.||.+|..||..|..
T Consensus 507 d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 507 TDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CSCHHHHHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHHHHHh
Confidence 2357899999999998764
No 73
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=69.09 E-value=4.8 Score=39.89 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.3
Q ss_pred CchhHHHHHHHHHHHhHh------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHhhh
Q psy8503 184 ENATVRAAAVTAMAQFGA------------LCQMDGDDEVRDRATYYHSILASQNKQLIQDY 233 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~~ 233 (421)
.|+-||+.|+.+|+++.. +|+.|.+.-||.-|.+...=|-..++++++.+
T Consensus 116 ~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~ 177 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW 177 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT
T ss_pred CcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 467788888888888875 78888888888888765443334455554443
No 74
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=68.97 E-value=19 Score=34.42 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=16.8
Q ss_pred Cccce---eEEeeccccCchhHHHHHHHHHHH
Q psy8503 170 PSKYI---RFIYNRVILENATVRAAAVTAMAQ 198 (421)
Q Consensus 170 P~kyI---R~IyNRviLEn~~VRaAAv~aLak 198 (421)
|.+++ .+|-+-+-=-|+.||-||++++..
T Consensus 202 ~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 202 PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56665 555444333456677777777663
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=68.54 E-value=35 Score=38.38 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=47.9
Q ss_pred HHHHHHHhhccCCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccc--ccee
Q psy8503 10 ATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGG--IDVL 87 (421)
Q Consensus 10 atlAittLLKTG~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg--~dvL 87 (421)
+++|-.-+..-|+.+. -+++|..|+..=+.+--.+---|+.+|-+-+-+..+-.+..|...|.......|. ++++
T Consensus 377 sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 377 TATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHhhhhccCchHH---HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHH
Confidence 3344444555576543 4777888865211222356667888888877776656778899888765433332 2322
Q ss_pred -eehhhhc
Q psy8503 88 -VRSKLAV 94 (421)
Q Consensus 88 -~rAkLal 94 (421)
..|-|+|
T Consensus 454 r~gAaLGL 461 (963)
T 4ady_A 454 LHGASLGI 461 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3455555
No 76
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=67.59 E-value=33 Score=37.66 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=74.4
Q ss_pred chhhHHhHHHHHHHHHh-hChhh------HHHHHHhhhhhcccCcchHH----HHHHHHHhcCCCCCCCC---CccceeE
Q psy8503 111 GLEYKASIADTIITIIE-ENPEA------KETGLAHLCEFIEDCEHTSL----AVRILHLLGKEGPRAKQ---PSKYIRF 176 (421)
Q Consensus 111 ~~~~K~~ivd~i~~ii~-~~p~~------ke~~L~~LcefIEDce~~~l----~~rIL~~LG~egp~t~~---P~kyIR~ 176 (421)
...-|+....++..+.. .+|+. ...++..|++.+. .+.+.+ +...|.-|-...+.... =...++.
T Consensus 549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 45667778888877664 34542 1246788888886 222222 23334333322110000 0123333
Q ss_pred EeeccccCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhhcHHHHhhhhc
Q psy8503 177 IYNRVILENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQNKQLIQDYII 235 (421)
Q Consensus 177 IyNRviLEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~~i~ 235 (421)
+-+-+-=+++.||.+|..+|++++. .++..+|.++|..|...+..|..+++..++..+.
T Consensus 628 Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~ 705 (810)
T 3now_A 628 IEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA 705 (810)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3333334678999999999999875 4556678899999999999998765555555544
No 77
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=64.29 E-value=8.2 Score=40.42 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhhh
Q psy8503 185 NATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILASQ 225 (421)
Q Consensus 185 n~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~~ 225 (421)
++.+|..|..||+.++. +++.|++++||..|.-.++.|...
T Consensus 47 ~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 47 DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45689999999988876 789999999999999888777544
No 78
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=63.96 E-value=4 Score=43.35 Aligned_cols=127 Identities=12% Similarity=0.114 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHHHHhCCch-hHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHH
Q psy8503 43 EFKIVVVEAIRALCLKFPRK-HAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADT 121 (421)
Q Consensus 43 efKi~vv~ai~~Lc~kfp~K-~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~ 121 (421)
+|+.-.-+.++.+|..+|.+ -..++.++...|...+ . .+.....+.+.+-+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~-----------------~-----------~~~~w~~~eaal~~ 487 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ-----------------R-----------HPTHWTKLEACIYS 487 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH-----------------H-----------CTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc-----------------C-----------CCCcHHHHHHHHHH
Confidence 46677888889999888854 3456778877775421 0 00134555566666
Q ss_pred HHHHHhhChhhHHH----HHHhhhhhcccCcchHHHHHHHHHhcCCCCCC-CCCcccee----EEeeccccCchhHHHHH
Q psy8503 122 IITIIEENPEAKET----GLAHLCEFIEDCEHTSLAVRILHLLGKEGPRA-KQPSKYIR----FIYNRVILENATVRAAA 192 (421)
Q Consensus 122 i~~ii~~~p~~ke~----~L~~LcefIEDce~~~l~~rIL~~LG~egp~t-~~P~kyIR----~IyNRviLEn~~VRaAA 192 (421)
+-.|.+..++.... .+..|.++-.+..++.+..+.+..||+..... .+| +|+. +|.+.+ ++.|+.+|
T Consensus 488 l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l---~~~v~~~A 563 (971)
T 2x1g_F 488 FQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL---NSSMSAQA 563 (971)
T ss_dssp HHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH---HSSCHHHH
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh---ChHHHHHH
Confidence 65555444432222 22222222211237788888888888654332 233 5554 344443 38899999
Q ss_pred HHHHHHhHh
Q psy8503 193 VTAMAQFGA 201 (421)
Q Consensus 193 v~aLakf~~ 201 (421)
..||.+|..
T Consensus 564 ~~al~~l~~ 572 (971)
T 2x1g_F 564 TLGLKELCR 572 (971)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999886
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=62.85 E-value=25 Score=35.63 Aligned_cols=23 Identities=9% Similarity=-0.204 Sum_probs=16.2
Q ss_pred hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 202 LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 202 r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
..+.+.+++|+..|...+..|..
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCChHHHHHHHHHHHHHHc
Confidence 55667777788887777766653
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=57.76 E-value=34 Score=36.06 Aligned_cols=108 Identities=11% Similarity=0.114 Sum_probs=61.6
Q ss_pred hhHHhHHHHHHHHHhhCh-hhHHHHHHhhhhhc------ccCcchHHHHHHHHHhcCCCCCCCCCccceeEEee---ccc
Q psy8503 113 EYKASIADTIITIIEENP-EAKETGLAHLCEFI------EDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYN---RVI 182 (421)
Q Consensus 113 ~~K~~ivd~i~~ii~~~p-~~ke~~L~~LcefI------EDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyN---Rvi 182 (421)
+|.++..+.+..+.+..| +.-+..+..+-+.+ .|+..-+-++..++-+++..+...+ .++.-+.+ ++.
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~--~~l~~l~~~l~~l~ 499 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS--DVVPGLIGLIPRIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC--SHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHHHhCC
Confidence 345566666655554333 22222233333333 2444555566666666655544332 33333332 222
Q ss_pred cCchhHHHHHHHHHHHhHh-----------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 183 LENATVRAAAVTAMAQFGA-----------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 183 LEn~~VRaAAv~aLakf~~-----------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
-+++.||.+|+.++++|+. .++.| ..||.+|...+.-|-+
T Consensus 500 ~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 500 ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHH
Confidence 2689999999999999876 55644 7899999977666543
No 81
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=57.56 E-value=5.9 Score=42.98 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCccceeEEeecc---ccC-chhHHHHHHHHHHHhHhhh
Q psy8503 148 EHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRV---ILE-NATVRAAAVTAMAQFGALC 203 (421)
Q Consensus 148 e~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRv---iLE-n~~VRaAAv~aLakf~~r~ 203 (421)
.++.+..+++..+|+......+..+|+.-++|.+ +.+ ++.||.+|..||.+|+..|
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555677777755432222224555444422 122 5788888888888887744
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=54.97 E-value=31 Score=37.91 Aligned_cols=131 Identities=8% Similarity=0.133 Sum_probs=84.2
Q ss_pred hhHHHHHHHHhhccCCcchHHHHHHHHHHhh----hhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhcccccc
Q psy8503 7 RSIATLAITTLLKTGSESSVDRLMKQIATFV----SEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRG 82 (421)
Q Consensus 7 rsiatlAittLLKTG~E~svdrL~kqI~~fm----seisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrg 82 (421)
|++++++...+++.-.+.+=+++.+-|.+.+ .+.+++-=++++. .|..-||==. +.-+..+..+|.
T Consensus 187 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~---~l~~lfPi~p----~~~s~lfl~e~~--- 256 (778)
T 3opb_A 187 KSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVK---TLSELYPSLT----TLCSEIFLTKGL--- 256 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH---HHHHHTTTTH----HHHHHHHSTTTH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHH---HHHHHhcCCH----HHHHHHHccccH---
Confidence 7999999999999999999999999999888 6655554444444 4555566433 344555666771
Q ss_pred ccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhccc----CcchHHHHHHHH
Q psy8503 83 GIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIED----CEHTSLAVRILH 158 (421)
Q Consensus 83 g~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIED----ce~~~l~~rIL~ 158 (421)
.+.|. +.. .+..+.++-.++.+.+-.. .....+|+.+..|..+|++. -++..++.=+|.
T Consensus 257 -~~~l~--~~~-------------~~~~~~~~~~a~L~lLsaA-Ci~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~ 319 (778)
T 3opb_A 257 -SKLFK--KRV-------------FEEQDLQFTKELLRLLSSA-CIDETMRTYITENYLQLLERSLNVEDVQIYSALVLV 319 (778)
T ss_dssp -HHHHH--HHH-------------HSSCCHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHH
T ss_pred -HHHHH--HHH-------------hcccchHHHHHHHHHHHHH-hCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHH
Confidence 11110 000 1112455666777766553 35678888888888888874 345556666776
Q ss_pred HhcCCC
Q psy8503 159 LLGKEG 164 (421)
Q Consensus 159 ~LG~eg 164 (421)
-|+..+
T Consensus 320 KL~~~~ 325 (778)
T 3opb_A 320 KTWSFT 325 (778)
T ss_dssp HHTGGG
T ss_pred HHhcCC
Confidence 666543
No 83
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=52.31 E-value=78 Score=30.98 Aligned_cols=34 Identities=6% Similarity=0.262 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCc
Q psy8503 24 SSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPR 61 (421)
Q Consensus 24 ~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~ 61 (421)
.+|..|++-+.+ =+.+-+.-...++++||...|.
T Consensus 2 ~~l~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~ 35 (457)
T 1xm9_A 2 LTIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDES 35 (457)
T ss_dssp CCHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChH
Confidence 356666665554 2456788888888998876654
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=50.73 E-value=2.4e+02 Score=29.58 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHHHhHh-----------------------hhcCCCChhhhhhHHHHHHHHhhh
Q psy8503 184 ENATVRAAAVTAMAQFGA-----------------------LCQMDGDDEVRDRATYYHSILASQ 225 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-----------------------r~~~D~DDEVRDRA~~yl~il~~~ 225 (421)
.++.++.+|+.||.++++ +.+..++++|+.-|.-.+..|...
T Consensus 321 ~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD 385 (584)
T ss_dssp CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999987742 566778888888888777777543
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=50.28 E-value=1.9e+02 Score=28.21 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHhHh------------------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 184 ENATVRAAAVTAMAQFGA------------------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~------------------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
+++.++.+|+.||++++. +.+.++|++||..|.-.+..|..
T Consensus 296 ~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 368999999999988742 67888999999999988888754
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=46.98 E-value=2e+02 Score=27.42 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=51.5
Q ss_pred HHHHhhhhhcccCc--chHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHh----H--------
Q psy8503 135 TGLAHLCEFIEDCE--HTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQF----G-------- 200 (421)
Q Consensus 135 ~~L~~LcefIEDce--~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf----~-------- 200 (421)
..|.+|.|=+=|-- +-+-..+||+.|-.- ..|++...|+-|-+-=-|+-+|+..++.|+.+ |
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v----~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~ 207 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV----VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS 207 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 45556655555554 445555555555432 35667777777766667788888887666543 2
Q ss_pred -----hhhcCCCChhhhhhHH
Q psy8503 201 -----ALCQMDGDDEVRDRAT 216 (421)
Q Consensus 201 -----~r~~~D~DDEVRDRA~ 216 (421)
+.++.|.|-.||+=|.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl 228 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAI 228 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHH
Confidence 2889999999999986
No 87
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=46.09 E-value=22 Score=39.52 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=94.0
Q ss_pred hHHHHHHHHhhcc-------CCcchHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhcccc
Q psy8503 8 SIATLAITTLLKT-------GSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVF 80 (421)
Q Consensus 8 siatlAittLLKT-------G~E~svdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvf 80 (421)
..|.||.++|.+. +.++.|..+.+.+...++.=..+-+++.++|+.++.. |.--+.++ +.|...|--
T Consensus 413 ~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~~l~~l~----~~l~~~~~~ 486 (1056)
T 1lsh_A 413 KTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PNSIKKIQ----RFLPGQGKS 486 (1056)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GGGHHHHH----TTSTTSSSC
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hhHHHHHH----HhhcCcccc
Confidence 4689999988863 4566688888777776666556668888899888874 55434443 333222200
Q ss_pred ccccc--eeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHH---hhChhhHHHHHHhhhhhcccCcchHHHHH
Q psy8503 81 RGGID--VLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITII---EENPEAKETGLAHLCEFIEDCEHTSLAVR 155 (421)
Q Consensus 81 rgg~d--vL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii---~~~p~~ke~~L~~LcefIEDce~~~l~~r 155 (421)
..... +-+.|-.||..= .....+.+-+.++.+. .+.||.|=.++..| ++=|.-..+..+
T Consensus 487 ~~~~~~rvr~aAi~ALr~~-------------~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~~~~l~~ 550 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNI-------------AKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVF---FESKPSVALVSM 550 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTG-------------GGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHh-------------hhhchHHHHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcCHHHHHH
Confidence 11111 112244444111 1233344555555554 24445555555544 222344445555
Q ss_pred HHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHhhhcCCCChhhhhhHHHHHHHHh
Q psy8503 156 ILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILA 223 (421)
Q Consensus 156 IL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~r~~~D~DDEVRDRA~~yl~il~ 223 (421)
|...|..| .|.+|++...+.|..++..+ .-...+++-.+...+++|.
T Consensus 551 ia~~l~~E--------------------~~~QV~sfv~S~l~sla~s~-~P~~~~la~~~~~a~~~l~ 597 (1056)
T 1lsh_A 551 VAVRLRRE--------------------PNLQVASFVYSQMRSLSRSS-NPEFRDVAAACSVAIKMLG 597 (1056)
T ss_dssp HHHHHTTC--------------------SCHHHHHHHHHHHHHHTTCC-SGGGHHHHHHHHHHHTTSC
T ss_pred HHHHHhhC--------------------chHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhc
Confidence 55555544 36789999999888776521 1123445555566566654
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=42.04 E-value=24 Score=39.57 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHhCCchh-HhHHHHHHHHHh
Q psy8503 43 EFKIVVVEAIRALCLKFPRKH-AVLMNFLSAMLR 75 (421)
Q Consensus 43 efKi~vv~ai~~Lc~kfp~K~-~~~l~FL~~~Lr 75 (421)
+|+--+.+.++.+|..+|..- ..++.++...+.
T Consensus 438 ~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~ 471 (1204)
T 3a6p_A 438 SSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS 471 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 467778899999999998753 334555655444
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=39.44 E-value=1.8e+02 Score=27.98 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=81.7
Q ss_pred cchhhHHHHHHHHHHHHhCC-chhHh-----HHHHHHHHHhhccccccccceeeehhhhc---ccCCcceEEEEEecCcc
Q psy8503 41 SDEFKIVVVEAIRALCLKFP-RKHAV-----LMNFLSAMLRDEGVFRGGIDVLVRSKLAV---SADTGVTMQLTVRSTSG 111 (421)
Q Consensus 41 sdefKi~vv~ai~~Lc~kfp-~K~~~-----~l~FL~~~Lr~eGvfrgg~dvL~rAkLal---~~~~~vtm~l~vRs~~~ 111 (421)
+.+.|.-...++++||..-+ .|..+ .+..|...|+.. ..++...|--|+ +.+ ++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-----~~~v~~~A~~aL~nLs~~------------~~ 159 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-----SEDLQQVIASVLRNLSWR------------AD 159 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHTT------------CC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-----CHHHHHHHHHHHHHHhcc------------CC
Confidence 34578888889999996544 44443 255666666532 234444443333 110 02
Q ss_pred hhhHHhHH-----HHHHHHHh--hChhhHHHHHHhhhhhcccCcch--HHH------HHHHHHhcCCCCCCCCCccceeE
Q psy8503 112 LEYKASIA-----DTIITIIE--ENPEAKETGLAHLCEFIEDCEHT--SLA------VRILHLLGKEGPRAKQPSKYIRF 176 (421)
Q Consensus 112 ~~~K~~iv-----d~i~~ii~--~~p~~ke~~L~~LcefIEDce~~--~l~------~rIL~~LG~egp~t~~P~kyIR~ 176 (421)
-+.|..|+ ..++.++. ..++.++.++.-|...--+|+-. .+. --+.++|.... +.
T Consensus 160 ~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~-----~~----- 229 (354)
T 3nmw_A 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS-----QT----- 229 (354)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC-----SS-----
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC-----Cc-----
Confidence 34566654 45666532 34677886554444433334221 111 11234443221 11
Q ss_pred EeeccccCchhHHHHHHHHHHHhHh----------------------hhcCCCChhhhhhHHHHHHHHhhhcHH
Q psy8503 177 IYNRVILENATVRAAAVTAMAQFGA----------------------LCQMDGDDEVRDRATYYHSILASQNKQ 228 (421)
Q Consensus 177 IyNRviLEn~~VRaAAv~aLakf~~----------------------r~~~D~DDEVRDRA~~yl~il~~~~~~ 228 (421)
+...|+..|..+|..++. ..+.+.+++|+..|.-.+..|..++++
T Consensus 230 -------~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 230 -------NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp -------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred -------ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH
Confidence 111455555555555541 667788999999999888888654444
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.82 E-value=1e+02 Score=27.70 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=12.0
Q ss_pred CCCCchhHHHHHHHHh
Q psy8503 2 ISDSNRSIATLAITTL 17 (421)
Q Consensus 2 I~DsNrsiatlAittL 17 (421)
++|+|-.+...|+.+|
T Consensus 64 l~DsN~~v~~~al~~l 79 (278)
T 4ffb_C 64 ITDSNVVAQEQAIVAL 79 (278)
T ss_dssp TTCSSHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHH
Confidence 5799998877766554
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=36.97 E-value=21 Score=39.26 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=35.9
Q ss_pred cccCchhHHHHHHHHHHHhHh--------------------hhcCC--CChhhhhhHHHHHHHHhh
Q psy8503 181 VILENATVRAAAVTAMAQFGA--------------------LCQMD--GDDEVRDRATYYHSILAS 224 (421)
Q Consensus 181 viLEn~~VRaAAv~aLakf~~--------------------r~~~D--~DDEVRDRA~~yl~il~~ 224 (421)
+-.++..+|.||..||+.++. ..+.| +|+++|-|+...+.-|-+
T Consensus 663 l~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 663 LQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 345889999999999999853 56677 899999999977776654
No 92
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=36.47 E-value=40 Score=37.14 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=72.3
Q ss_pred hhHHhHHHHHHHHHhh-Chhh-HH----HHHHhhhhhc-----ccCcchHHHHHHHHHhcCCCCCC--------CCCccc
Q psy8503 113 EYKASIADTIITIIEE-NPEA-KE----TGLAHLCEFI-----EDCEHTSLAVRILHLLGKEGPRA--------KQPSKY 173 (421)
Q Consensus 113 ~~K~~ivd~i~~ii~~-~p~~-ke----~~L~~LcefI-----EDce~~~l~~rIL~~LG~egp~t--------~~P~ky 173 (421)
+|.+.+- ++.+.+.- .|+. -+ .+...+.+.+ .+|+..+.+.-.|+.+|+-.+.. ....+.
T Consensus 413 e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 413 EMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp HHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred HHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 5777776 77776643 3443 22 2222333444 36888899999999998865431 111123
Q ss_pred eeEEeeccc-----cCchhHHHHHHHHHHHhHh-------------------hhcCCCChhhhhhHHHHHHHHhh
Q psy8503 174 IRFIYNRVI-----LENATVRAAAVTAMAQFGA-------------------LCQMDGDDEVRDRATYYHSILAS 224 (421)
Q Consensus 174 IR~IyNRvi-----LEn~~VRaAAv~aLakf~~-------------------r~~~D~DDEVRDRA~~yl~il~~ 224 (421)
+.++-+-+- -.+|.||-++..++++++. |.+.|++..||-||.+.++-|-+
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 333332211 4789999999999999887 47788999999999987777643
No 93
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=34.70 E-value=3e+02 Score=25.95 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=52.6
Q ss_pred hcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHH
Q psy8503 40 ISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIA 119 (421)
Q Consensus 40 isdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~iv 119 (421)
.+|+-|+..+..++.|.+. +.-..+-+||-..|.-.+ + ...+.++.++
T Consensus 27 ~~~~~kl~~L~qa~el~~~--~dp~ll~~~l~~il~~~~-----------------~-------------~~~~vrk~~~ 74 (257)
T 3gs3_A 27 ASPSTKCELLAKVQETVLG--SCAELAEEFLESVLSLAH-----------------D-------------SNMEVRKQVV 74 (257)
T ss_dssp CCHHHHHHHHHHHHHHHTT--TTGGGHHHHHHHHHGGGG-----------------C-------------SCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHc--cCHhHHHHHHHHHHHhcc-----------------C-------------ChHHHHHHHH
Confidence 3778999999999998775 122366777877776544 1 2688999999
Q ss_pred HHHHHHHhhChhhHHHHHHhhhhhccc
Q psy8503 120 DTIITIIEENPEAKETGLAHLCEFIED 146 (421)
Q Consensus 120 d~i~~ii~~~p~~ke~~L~~LcefIED 146 (421)
+-|.+...+-|+.--..+..|..+++|
T Consensus 75 ~Fi~e~~~~k~~l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 75 AFVEQVCKVKVELLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999888876666555555555555554
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=33.52 E-value=22 Score=37.17 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEeecccc-CchhHHHHHHHHH
Q psy8503 118 IADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVIL-ENATVRAAAVTAM 196 (421)
Q Consensus 118 ivd~i~~ii~~~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviL-En~~VRaAAv~aL 196 (421)
|.-.+-.+-...|+.|+.++.-|++.++|.+...+..+ .+-|+-+..++.. .+..||.+|..||
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~---------------~~~v~~ll~~lL~D~~~~Vr~~A~gaL 100 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR---------------EQVVHIVLTETLTDNNIDSRAAGWEIL 100 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH---------------TTHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH---------------cCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33333344456789999999999999999876666554 2223322223233 5789999999999
Q ss_pred HHhHh
Q psy8503 197 AQFGA 201 (421)
Q Consensus 197 akf~~ 201 (421)
..++.
T Consensus 101 rnL~~ 105 (684)
T 4gmo_A 101 KVLAQ 105 (684)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 95
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=33.17 E-value=2.5e+02 Score=28.22 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=50.2
Q ss_pred hcchhhHHHHHHHHHHHH-hCCchhHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhH
Q psy8503 40 ISDEFKIVVVEAIRALCL-KFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASI 118 (421)
Q Consensus 40 isdefKi~vv~ai~~Lc~-kfp~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~i 118 (421)
.+++-|+..+..++.|.. +-| ..+-+||-.+|.-.- ....+.++.+
T Consensus 37 ~~~~~Kl~~L~q~~EL~l~~dp---sLl~~fl~~il~f~~------------------------------d~~~~vRk~~ 83 (386)
T 3o2t_A 37 ITNDSKITVLKQVQELIINKDP---TLLDNFLDEIIAFQA------------------------------DKSIEVRKFV 83 (386)
T ss_dssp CCSTHHHHHHHHHHHHHHTTCG---GGGGGGHHHHHGGGG------------------------------CSCHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhcc------------------------------CCcHHHHHHH
Confidence 356789999999999877 445 355667776664322 1158899999
Q ss_pred HHHHHHHHhhChhhHHHHHHhhhhhccc
Q psy8503 119 ADTIITIIEENPEAKETGLAHLCEFIED 146 (421)
Q Consensus 119 vd~i~~ii~~~p~~ke~~L~~LcefIED 146 (421)
++-|.+.....++.--..+..|..+++|
T Consensus 84 a~FieEa~~~~~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 84 IGFIEEACKRDIELLLKLIANLNMLLRD 111 (386)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9988887765555555555555555544
No 96
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=32.50 E-value=2.6e+02 Score=28.16 Aligned_cols=48 Identities=17% Similarity=0.060 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHhCC-chhHh-----HHHHHHHHHhhccccccccceeeehhhhc
Q psy8503 42 DEFKIVVVEAIRALCLKFP-RKHAV-----LMNFLSAMLRDEGVFRGGIDVLVRSKLAV 94 (421)
Q Consensus 42 defKi~vv~ai~~Lc~kfp-~K~~~-----~l~FL~~~Lr~eGvfrgg~dvL~rAkLal 94 (421)
.+.+.-...++++||..-+ .|..+ .+..|...|+. +..++...|--|+
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-----~~~~v~~~A~~aL 267 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-----ESEDLQQVIASVL 267 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC-----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 3457777888999997654 34333 24566666653 2345555554444
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=31.64 E-value=72 Score=35.04 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEE
Q psy8503 26 VDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLT 105 (421)
Q Consensus 26 vdrL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~ 105 (421)
.|+.++.+-.=++|-.||-+-+..+++.-.. .|.+...+++-++.+|.+.. |
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LD------------------D-------- 348 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEE------------------L-------- 348 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCC------------------S--------
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhc------------------c--------
Confidence 6667666666667777888888888887777 78888999999999998754 0
Q ss_pred EecCcchhhHHhHHHHHHHHHhh---------------------ChhhHHHHHHhhhhhcccCcchHHHHHHHHHhcCCC
Q psy8503 106 VRSTSGLEYKASIADTIITIIEE---------------------NPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEG 164 (421)
Q Consensus 106 vRs~~~~~~K~~ivd~i~~ii~~---------------------~p~~ke~~L~~LcefIEDce~~~l~~rIL~~LG~eg 164 (421)
---...+|.+.+-.++.. |++.|.+.|.-|..|+
T Consensus 349 -----LSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------------------- 403 (800)
T 3oc3_A 349 -----ISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------------------- 403 (800)
T ss_dssp -----CCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--------------------
T ss_pred -----cchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--------------------
Confidence 122334666666655543 3344555555555555
Q ss_pred CCCCCCccceeEEeeccccC-chhHHHHHHHHHH
Q psy8503 165 PRAKQPSKYIRFIYNRVILE-NATVRAAAVTAMA 197 (421)
Q Consensus 165 p~t~~P~kyIR~IyNRviLE-n~~VRaAAv~aLa 197 (421)
-.+..|+||=+++|| ++.||..+....-
T Consensus 404 -----~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 -----EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -----CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 247899999999997 5789999888774
No 98
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=30.72 E-value=58 Score=30.06 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=32.0
Q ss_pred CCcchHHHHHHHHHHhhhhhcchhhHH-HHHHHHHHHHhCC
Q psy8503 21 GSESSVDRLMKQIATFVSEISDEFKIV-VVEAIRALCLKFP 60 (421)
Q Consensus 21 G~E~svdrL~kqI~~fmseisdefKi~-vv~ai~~Lc~kfp 60 (421)
.+++.++++++.|...+.+..++-.+- |.+.+..||.+||
T Consensus 377 ~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (420)
T 3gbx_A 377 FKEAEVKELAGWMCDVLDNINDEATIERVKAKVLDICARFP 417 (420)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHhCC
Confidence 458899999999999988876543332 5688999999998
No 99
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=30.70 E-value=1.4e+02 Score=25.97 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=51.9
Q ss_pred CCCCchhHHHHHHHHh------------hccCCcchHHHHHHHHHH-hh-hhhcchhhHHHHHHHHHHHHhCCchhHhHH
Q psy8503 2 ISDSNRSIATLAITTL------------LKTGSESSVDRLMKQIAT-FV-SEISDEFKIVVVEAIRALCLKFPRKHAVLM 67 (421)
Q Consensus 2 I~DsNrsiatlAittL------------LKTG~E~svdrL~kqI~~-fm-seisdefKi~vv~ai~~Lc~kfp~K~~~~l 67 (421)
|.+.|...+.+|++-| ...++++=++.|++-+.. |. +..+.+-|--|++.|..+..-||+.-. +
T Consensus 57 l~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~--i 134 (149)
T 3g2s_A 57 IQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVK--I 134 (149)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHH--H
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCch--H
Confidence 4567888888888632 223555666676666642 22 134567788899999999999988544 3
Q ss_pred HHHHHHHhhccc
Q psy8503 68 NFLSAMLRDEGV 79 (421)
Q Consensus 68 ~FL~~~Lr~eGv 79 (421)
.=.-+.|+.+|+
T Consensus 135 ~~~Y~~Lk~~Gi 146 (149)
T 3g2s_A 135 AEAYQMLKKQGI 146 (149)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCcC
Confidence 456678888993
No 100
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=30.07 E-value=53 Score=30.41 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHhhhhh------cchhhHHHHHHHHHHHHhCC
Q psy8503 22 SESSVDRLMKQIATFVSEI------SDEFKIVVVEAIRALCLKFP 60 (421)
Q Consensus 22 ~E~svdrL~kqI~~fmsei------sdefKi~vv~ai~~Lc~kfp 60 (421)
+++.||++++.|...+.+. .++-.-.+.+.|+.||.+||
T Consensus 379 ~~e~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (425)
T 3ecd_A 379 GAAEFREVGRLILEVFEALRTNPEGDHATEQRVRREIFALCERFP 423 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHhccccccccCchhHHHHHHHHHHHHhcCC
Confidence 3789999999999998886 33444456788999999998
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=28.31 E-value=17 Score=33.94 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHHHhHh-hhcCCCChhhhhhHHH
Q psy8503 184 ENATVRAAAVTAMAQFGA-LCQMDGDDEVRDRATY 217 (421)
Q Consensus 184 En~~VRaAAv~aLakf~~-r~~~D~DDEVRDRA~~ 217 (421)
+++.||.+|..+|..-.. +.+.|+|.+||-.|..
T Consensus 86 ~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 86 SDEVVRRAVAYRLPREQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp SSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHH
Confidence 355666666655543333 5566666666665554
No 102
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=28.26 E-value=47 Score=27.41 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=48.2
Q ss_pred CchhHhHHHHHHHHHhhccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHHHHHHHHH-hhCh-hhHHHHH
Q psy8503 60 PRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITII-EENP-EAKETGL 137 (421)
Q Consensus 60 p~K~~~~l~FL~~~Lr~eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~ivd~i~~ii-~~~p-~~ke~~L 137 (421)
-+.+.-+.++|..-|.+.| |+....-+||+.+.=. + ...| ..+++.|.--. .-+| +.|...|
T Consensus 19 SGe~erL~~lL~~rL~EcG-W~Devr~~~r~~i~~~-~-------------~vt~-~~L~~~I~P~Ar~~VP~~VK~Ell 82 (96)
T 3mhs_B 19 SGNYELISNELKARLLQEG-WVDKVKDLTKSEMNIN-E-------------STNF-TQILSTVEPKALEMVSDSTRETVL 82 (96)
T ss_dssp TTHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-T-------------CCCH-HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhc-C-------------CCCH-HHHHHHHhHHHHHHCCHHHHHHHH
Confidence 3678889999999999999 8888888888877553 2 2222 23333333322 3566 4578888
Q ss_pred Hhhhhhccc
Q psy8503 138 AHLCEFIED 146 (421)
Q Consensus 138 ~~LcefIED 146 (421)
..+.+|+++
T Consensus 83 ~~Ir~fL~~ 91 (96)
T 3mhs_B 83 KQIREFLEE 91 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=26.29 E-value=23 Score=33.10 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=47.7
Q ss_pred hhhhcccCcchHHHHHHHHHhcCCCCCCCCCccceeEEeeccccCchhHHHHHHHHHHHhHh-hhcCCCChhhhhhHHH
Q psy8503 140 LCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGA-LCQMDGDDEVRDRATY 217 (421)
Q Consensus 140 LcefIEDce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviLEn~~VRaAAv~aLakf~~-r~~~D~DDEVRDRA~~ 217 (421)
-|+-=.=|-...-+.||..|+... |.-.- --+-=+++.||.+|...|..+.. ..+.|+|+.||-.|.-
T Consensus 28 ~c~~~~~c~~~~~~~ri~~~~~~~------p~l~~----~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 28 RCTPGDACVAVESGRQIDRFFRNN------PHLAV----QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp SSBTTTBCSSSSCHHHHHHHHHHC------GGGGG----GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHT
T ss_pred CCCCCchHhhcCcHHHHHHHHcCC------HHHHH----HHhcCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHH
Confidence 344445566777788888887553 32211 11234579999999998876666 7789999999999985
No 104
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=26.24 E-value=1.7e+02 Score=26.33 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=38.7
Q ss_pred hhcCCCChhhhhhHHHHHHHHhhhcHHHHhhhhcCCCCCChHHHHHHH
Q psy8503 202 LCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPLMVSIPSLERAL 249 (421)
Q Consensus 202 r~~~D~DDEVRDRA~~yl~il~~~~~~~~~~~i~~~~~~s~~~Le~~L 249 (421)
+++.|+++-||-=..-+++-+...+++....|+ ....++.-.+..++
T Consensus 166 ~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl-~~~~l~~~~~r~Ai 212 (220)
T 2b6c_A 166 YDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM-KELVLSPLAQREGS 212 (220)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH-HHSCCCHHHHHHHT
T ss_pred HhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH-hhccCCHHHHHHHH
Confidence 789999999999999999988888999999999 55556766676555
No 105
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=23.65 E-value=71 Score=24.80 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhCCchhHhH
Q psy8503 27 DRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRKHAVL 66 (421)
Q Consensus 27 drL~kqI~~fmseisdefKi~vv~ai~~Lc~kfp~K~~~~ 66 (421)
+.+|+++-+++ +..-+=.|.+++..+|.++|.+++..
T Consensus 8 ~~~v~~le~~l---~n~Te~~I~~~L~~vC~~l~~~~~~~ 44 (74)
T 1l9l_A 8 LTIVQKLKKMV---DKPTQRSVSNAATRVCRTGRSRWRDV 44 (74)
T ss_dssp HHHHHHHHHHC---SSCCHHHHHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHHh---cccCHHHHHHHHHHHHHhCChHHHHH
Confidence 45788888886 45677789999999999999877765
No 106
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=20.53 E-value=1.1e+02 Score=29.82 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=30.7
Q ss_pred chhhHHhHHHHHHHHHhhChhhHHHHHHhhhhhcccC
Q psy8503 111 GLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDC 147 (421)
Q Consensus 111 ~~~~K~~ivd~i~~ii~~~p~~ke~~L~~LcefIEDc 147 (421)
--+.|+.+++.+-.+++++-.+++.+-.+-+++|.|-
T Consensus 86 ~~~~k~~l~~~~~~~~~~~~~a~~~I~~~~~~~I~~g 122 (315)
T 3ecs_A 86 YSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDG 122 (315)
T ss_dssp ---CTTHHHHHHHHHHHHHTTHHHHHHHHHGGGCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4577889999999999999999999999999999883
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=20.19 E-value=52 Score=36.62 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhCCch-hHhHHHHHHHHHhh-ccccccccceeeehhhhcccCCcceEEEEEecCcchhhHHhHH
Q psy8503 42 DEFKIVVVEAIRALCLKFPRK-HAVLMNFLSAMLRD-EGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIA 119 (421)
Q Consensus 42 defKi~vv~ai~~Lc~kfp~K-~~~~l~FL~~~Lr~-eGvfrgg~dvL~rAkLal~~~~~vtm~l~vRs~~~~~~K~~iv 119 (421)
+.||..- |.+..+|.-.+.. -..++++|...+.. +. ......+.+
T Consensus 428 ~~f~~~R-d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~--------------------------------~W~~~EA~~ 474 (1023)
T 4hat_C 428 QLYKSER-EVLVYLTHLNVIDTEEIMISKLARQIDGSEW--------------------------------SWHNINTLS 474 (1023)
T ss_dssp HHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTC--------------------------------CHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhccCHHHHHHHHHHHHHHHhcCCCC--------------------------------CHHHHHHHH
Q ss_pred HHHHHHHhhChhhHH-----HHHHhhhhhccc----CcchHHHHHHHHHhcCCCCCCCCCccceeEEeecccc----Cch
Q psy8503 120 DTIITIIEENPEAKE-----TGLAHLCEFIED----CEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVIL----ENA 186 (421)
Q Consensus 120 d~i~~ii~~~p~~ke-----~~L~~LcefIED----ce~~~l~~rIL~~LG~egp~t~~P~kyIR~IyNRviL----En~ 186 (421)
=++=.|.+...+-.+ +++..|....|+ -....++..++-.||+.........+|..-+.|-+.= .++
T Consensus 475 ~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~ 554 (1023)
T 4hat_C 475 WAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHE 554 (1023)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCH
Q ss_pred hHHHHHHHHHHHhHhhh
Q psy8503 187 TVRAAAVTAMAQFGALC 203 (421)
Q Consensus 187 ~VRaAAv~aLakf~~r~ 203 (421)
.|..+|..||.+|+..|
T Consensus 555 ~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 555 GVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Done!