RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8503
(421 letters)
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 122 bits (309), Expect = 1e-30
Identities = 35/267 (13%), Positives = 93/267 (34%), Gaps = 53/267 (19%)
Query: 3 SDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRK 62
+ + + +++ S++++ +++ ++ + +E+ +F V AI +K +
Sbjct: 328 YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS 387
Query: 63 HAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTI 122
++ L +++ + + V + V I
Sbjct: 388 AERCVSTLLDLIQTKVNY-------------VVQEAIVV--------------------I 414
Query: 123 ITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVI 182
I + P E+ +A LCE ++ + ++ ++G+ R + +
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFH 474
Query: 183 LENATVRAAAVTAMAQFGA---------------LCQMDGDD-EVRDRATYYHSILASQN 226
E+ V+ +TA+ + L D D+ ++RDR Y +L S +
Sbjct: 475 DESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL-STD 533
Query: 227 KQLIQDYIIE---PLMVSIPSLERALH 250
++ ++ + +E L
Sbjct: 534 PVTAKEVVLSEKPLISEETDLIEPTLL 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 85.5 bits (211), Expect = 7e-18
Identities = 63/344 (18%), Positives = 111/344 (32%), Gaps = 95/344 (27%)
Query: 109 TSGLEYKASIADTIITIIEENPEAKETGL--AHLCEFIEDCEHTSLAVRILH-----LLG 161
T+ E + +++E + + + L EF E+ L +H LL
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHALAAKLLQ 110
Query: 162 KEGPRAKQPSKYIRFIYN-RVIL--------ENATVRAAA---VTAMAQFGALCQMDGD- 208
+ + + I+ R++ +A RA +A FG Q G+
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--Q--GNT 166
Query: 209 ----DEVRDRATYYHSILASQNKQLIQ--DYIIEPLMVSIPSLERAL-HAYNL-----HP 256
+E+RD YH ++ LI+ + L+ + E+ N+ +P
Sbjct: 167 DDYFEELRDLYQTYHVLV----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 257 SPTPFDMS-------SIPLSTITT------------SDPTEMADRLRTPSGGVASEPTAQ 297
S TP D S PL + P E+ L+ +G TA
Sbjct: 223 SNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 298 ATARV---ESYYEKLSAALPEIANLPGTLFKSAAPVRRDLRSVFHSYAV--------SM- 345
A A ES++ + A+ + G A P L ++ M
Sbjct: 282 AIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPML 339
Query: 346 ------RRQLDVH----SASGVGLEDLEISLSDQMAKVNKP-NF 378
+ Q+ + ++ + +EISL VN N
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISL------VNGAKNL 377
Score = 59.7 bits (144), Expect = 1e-09
Identities = 73/450 (16%), Positives = 131/450 (29%), Gaps = 158/450 (35%)
Query: 5 SNRSIATLAITTLLKTGSESSVDRLMKQ------IATFVSEISDEFKI---VVVEAIRAL 55
+ R + + L + E + +L+ + E+ D ++ +V + I+
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNA-QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 56 CLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYK 115
L + L E VF G+++L L +T +Y
Sbjct: 192 -------AETLSELIRTTLDAEKVFTQGLNIL--EWLE-----------NPSNTPDKDYL 231
Query: 116 ASIADTIIT--IIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKY 173
SI I+ +I G+ L ++ LLG P +
Sbjct: 232 LSIP---ISCPLI---------GVIQLAHYVVTA----------KLLGFT------PGEL 263
Query: 174 IRFIYNRVILENATVR-----AAAVTAMAQFGALCQMDGDDEVRDRATYYHSIL-----A 223
R L+ AT A A D + ++L
Sbjct: 264 ------RSYLKGATGHSQGLVTAVAIAET--------DSWESFFVSVRKAITVLFFIGVR 309
Query: 224 SQNKQLIQDYIIEPLMVSIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRL 283
+ + + P ++ SLE N P+P M SI S +T + ++
Sbjct: 310 CY--EAYPNTSLPPSILED-SLE------NNEGVPSP--MLSI--SNLTQEQVQDYVNKT 356
Query: 284 RT--PSGG--------------VASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSA 327
+ P+G V+ P Q+ + K A P L +S
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPP--QSLYGLNLTLRKAKA--------PSGLDQSR 406
Query: 328 APVR-RDLR--------SV-FHS-Y---AVSM-------------RRQLDV---HSASGV 357
P R L+ + FHS A + + + + + G
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 358 GLEDLEISLSDQMAK--VNKPNFLALWEEA 385
L L S+S+++ + P WE
Sbjct: 467 DLRVLSGSISERIVDCIIRLP---VKWETT 493
Score = 46.6 bits (110), Expect = 1e-05
Identities = 55/337 (16%), Positives = 104/337 (30%), Gaps = 127/337 (37%)
Query: 111 GLE-YKASI--------AD---------TIITIIEENPEAK------ETG-------LAH 139
G++ YK S AD +I+ I+ NP E G A
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 140 LCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNRVILENATV---RAAAVTAM 196
+ E I D + + +I + + + Y F + +L +AT A +
Sbjct: 1692 IFETIVDGKLKTE--KIFKEINEH------STSYT-FRSEKGLL-SATQFTQPALTLMEK 1741
Query: 197 AQFGALCQMDGDDEVRDRATYY--HSI-----LASQNKQL-IQDYIIEPLMVSIPSLERA 248
A F L + G + + HS+ LAS + I+ + +V R
Sbjct: 1742 AAFEDL-KSKG---LIPADATFAGHSLGEYAALASLADVMSIESLV---EVVFY----RG 1790
Query: 249 LHAYNLHP----SPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVES 304
+ P + + M +I +P +A + ++
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAI--------NPGRVAASF--------------SQEALQY 1828
Query: 305 YYEKLSAA---LPEIAN--LPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASG--V 357
E++ L EI N + +Q V A+G
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVEN-------------------------QQY-V--AAGDLR 1860
Query: 358 GLEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEM 394
L+ + L+ K+ K + + L +++ + E +
Sbjct: 1861 ALDTVTNVLNF--IKLQKIDIIEL-QKSLSLEEVEGH 1894
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR
domain, endocytosis/exocytosis complex; 2.31A {Bos
taurus} SCOP: b.1.10.3 d.105.1.2
Length = 322
Score = 63.5 bits (154), Expect = 2e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 241 SIPSLERALHAYNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATA 300
SIP LERAL Y L PS PFD+ S+PL+T ++ + + A +P A
Sbjct: 2 SIPGLERALQQYTLEPSEKPFDLKSVPLATAPLAEQRTESTPVTA-----AKQPEKVAAT 56
Query: 301 RVESYYEKLSAALPEIANLPGTLFKSAA 328
R E + E+L+ A+PE L G LFKS+
Sbjct: 57 RQEIFQEQLA-AVPEFQGL-GPLFKSSP 82
Score = 60.4 bits (146), Expect = 2e-10
Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 359 LEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASI 413
LEDLE++++D + KV K NF A W+E + + E+TF LS +++++EAV +I
Sbjct: 201 LEDLEVTIADHIQKVMKLNFEAAWDEVGDE---FQKEETFTLSTIKTLEEAVGNI 252
Score = 44.6 bits (105), Expect = 3e-05
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 38 SEISDEFKIVVV----EAIRALCLKF-----PRKHAVLMNFLSAMLRDEGVFRGGIDVLV 88
+ + F + + EA+ + R V N + L GVFRGG D+LV
Sbjct: 231 FQKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILV 290
Query: 89 RSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITII 126
RS+L + VTMQ+T RS+ D ++ +
Sbjct: 291 RSRLLLL--DTVTMQVTARSSE-----ELPVDIVLASV 321
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich,
ADP-ribosylation factors, protein transport; 1.90A {Homo
sapiens} SCOP: b.1.10.3 d.105.1.2
Length = 275
Score = 60.8 bits (147), Expect = 1e-10
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 359 LEDLEISLSDQMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASI 413
LEDLE++++D + KV K NF A W+E + E E+TF LS +++++EAV +I
Sbjct: 154 LEDLEVTVADHIQKVMKLNFEAAWDEVGDE---FEKEETFTLSTIKTLEEAVGNI 205
Score = 45.4 bits (107), Expect = 1e-05
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 38 SEISDEFKIVVV----EAIRALCLKF-----PRKHAVLMNFLSAMLRDEGVFRGGIDVLV 88
E + F + + EA+ + R V N + L GVFRGG D+LV
Sbjct: 184 FEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILV 243
Query: 89 RSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITII 126
RS+L + VTMQ+T RS D I+ +
Sbjct: 244 RSRLLLL--DTVTMQVTARSLE-----ELPVDIILASV 274
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 9e-09
Identities = 69/454 (15%), Positives = 128/454 (28%), Gaps = 125/454 (27%)
Query: 2 ISDSNRSIATLA-ITTLLKTGS-ESSVDRLM--------KQIATFVSEISD---EFKIVV 48
+ D +SI + I ++ + S RL + + FV E+ +F +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---L 94
Query: 49 VEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGG-------IDVLVRSKL-AVSADTGV 100
+ I+ + + + + D VF L R L + V
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNV 153
Query: 101 TMQ---------LTVRSTSGLEYKASIADTI--ITIIEEN-PEAKETGLAHLC-----EF 143
+ + + + + + I + + N PE L L +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 144 IEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR--VILENATVRAAAVTAMAQFGA 201
+H+S +H + + R SK Y ++L N V+ A F
Sbjct: 214 TSRSDHSSNIKLRIHSI-QAELRRLLKSK----PYENCLLVLLN--VQNAKA--WNAFNL 264
Query: 202 LCQM---DGDDEVRDR---ATYYHSILASQNKQLIQDYIIEPLM----VSIPSLERALHA 251
C++ +V D AT H L + L D + L+ L R +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 252 YNLHPSPTPFDMSSIPLSTITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSA 311
N P +S I S D D + V + +ES L
Sbjct: 325 TN------PRRLSIIAESI---RDGLATWDNWKH----VNCDKLTTI---IESSLNVLE- 367
Query: 312 ALPEIANLPGTLFKSAAPVRRDLRSVFHSYAVSMRRQLDVHSASGVGLEDLEISLSDQMA 371
P + R +F +V H + + L +
Sbjct: 368 --PA-----------------EYRKMFDRLSVFPP---SAHIPTIL----LSL------- 394
Query: 372 KVNKPNFLALWEEAETDES---MNEMEDTFCLSK 402
+W + + +N++ + K
Sbjct: 395 ---------IWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 30.2 bits (67), Expect = 1.8
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 102 MQLTVR-STSGLEYKASIADTIITI------IEENPEAKETGLAHLCEFIEDCEHTSLA- 153
++ +R ++ SI +T+ + I +N E + + +F+ E +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 154 --VRILHL 159
+L +
Sbjct: 563 KYTDLLRI 570
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 43.0 bits (101), Expect = 2e-04
Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 67/293 (22%)
Query: 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPR 61
+ D + SI A+ + +++ +MK++ F+ EFK I K+
Sbjct: 359 LKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY-- 416
Query: 62 KHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADT 121
R ID ++R V +T+G +
Sbjct: 417 ---------------APSKRWHIDTIMR----------------VLTTAGSYVRDDAVPN 445
Query: 122 IITIIEENPEAKETGLAHLCEFI-EDCEHTSLAVRILHLLG------------KEGPRAK 168
+I +I + E + L + I D L +G +E P
Sbjct: 446 LIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQV 505
Query: 169 QPSKYIRFIYNRVI--LENATVRAAAVTAMAQFGA--------------LCQMDGDDEVR 212
+ + + + +I + + R A+TA+ + + D E++
Sbjct: 506 TEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQ 565
Query: 213 DRATYYHSILASQNKQLIQDYIIEPLMV---SIPSLERALHAYNLHPSPTPFD 262
RA Y+++ + ++ ++E + V + + N P P +
Sbjct: 566 QRAVEYNALF--KKYDHMRSALLERMPVMEKVTTNGPSEIVQTNGETEPAPLE 616
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 42.6 bits (100), Expect = 2e-04
Identities = 32/269 (11%), Positives = 85/269 (31%), Gaps = 57/269 (21%)
Query: 3 SDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPRK 62
++ + S+ A+ L S+ +++ ++ +++ + +V + L K+
Sbjct: 379 TERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD 438
Query: 63 HAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTI 122
+ +D ++ + +G + +
Sbjct: 439 -----------------YTWYVDTILN----------------LIRIAGDYVSEEVWYRV 465
Query: 123 ITIIEENPEAKETGLAHLCEFI-EDCEHTSLAVRILHLLG-----KEGPRAKQPSKYIRF 176
I I+ + + + E + H +L ++LG G P
Sbjct: 466 IQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNL 525
Query: 177 IYNRVILENATVRAAAVTAMAQFGALC----------------QMDGDDEVRDRATYYHS 220
++++ L + RA ++ +F L + D E++ RA Y
Sbjct: 526 LHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLR 585
Query: 221 ILASQNKQLIQDYIIEPLMVSIPSLERAL 249
+ + ++ ++E M P E ++
Sbjct: 586 LSTVASTDILAT-VLEE-MPPFPERESSI 612
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 40.8 bits (95), Expect = 5e-04
Identities = 19/24 (79%), Positives = 23/24 (95%)
Query: 1 MISDSNRSIATLAITTLLKTGSES 24
+++D+NRSIATLAITTLLKTGSE
Sbjct: 332 LVTDANRSIATLAITTLLKTGSEG 355
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 35.2 bits (81), Expect = 0.032
Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 50/238 (21%)
Query: 1 MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALC-LKF 59
++ D N + L G + +V ++ SD+ I L +K
Sbjct: 31 LLDDHNSLKRISSARVLQLRGGQDAVRLAIEFC-------SDKNYIRRDIGAFILGQIKI 83
Query: 60 PRKH--AVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKAS 117
+K V + L D+ VR+ S + +
Sbjct: 84 CKKCEDNVFNILNNMALNDK-------SACVRATAIESTAQ-------RCKKNPIYSPKI 129
Query: 118 IADTIITIIEENPE------------AKETGLAHLCEFIEDCEHT--SLAVRILHLLGKE 163
+ + IT +++ + + L ++D + A +++ +
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189
Query: 164 GPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFG------ALCQMDGDDEVRDRA 215
+ + +N VR A+ ++ LC + V D
Sbjct: 190 NSDIRDC------FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDI 241
Score = 27.8 bits (62), Expect = 6.6
Identities = 24/191 (12%), Positives = 55/191 (28%), Gaps = 23/191 (12%)
Query: 40 ISDEFKIVVVEAIRALCLKFPRKHAVLMNFLSAMLRDEGVFRGGIDVLVRSK----LAVS 95
+S+ + +A + L K + L +L D + L R L +
Sbjct: 1 MSNTY--QKRKASKEYGLYNQCKKLND-DELFRLLDDH-------NSLKRISSARVLQLR 50
Query: 96 ADTGVTMQLTVRSTSGLEYKASIADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVR 155
+ + I I+ I+ + ++ L + + +
Sbjct: 51 GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110
Query: 156 ILHLLGKEG-PRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFG------ALCQM--D 206
+ + K + ++ VR A A++ L + D
Sbjct: 111 AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD 170
Query: 207 GDDEVRDRATY 217
+ +VR+ A +
Sbjct: 171 PNGDVRNWAAF 181
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 34.3 bits (78), Expect = 0.055
Identities = 17/147 (11%), Positives = 42/147 (28%), Gaps = 23/147 (15%)
Query: 119 ADTIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGP-RAKQPSKYIRFI 177
I+ I + + E L L ++ E L I G+ + + I +
Sbjct: 53 ISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVL 112
Query: 178 YNRVILENATVRAAAVTAMAQFG------------ALCQM--DGDDEVRDRATYYHSILA 223
+ + + + A+ + M + E + A + +
Sbjct: 113 FANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172
Query: 224 SQNKQLIQDYIIEPLMVSIPSLERALH 250
+ + + + +P + LH
Sbjct: 173 ENSFKYVNPF--------LPRIINLLH 191
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 33.4 bits (77), Expect = 0.17
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 152 LAVRIL--HLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDD 209
L+ +I+ HL ++ Y+R +RV +++AT A AM QF + G
Sbjct: 37 LSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDAT----AQMAMLQFISS----GLP 88
Query: 210 EVRDRATYY--HSILA 223
+V +T + H I A
Sbjct: 89 KVAVPSTIHCDHLIEA 104
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 30.9 bits (69), Expect = 0.89
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 3 SDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSE-ISDEFKIVVVEAIRALCLKFPR 61
D +S+ + L + + ++ +++ + E D + ++ L +P
Sbjct: 183 EDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYP- 241
Query: 62 KHAVLMNFLSAMLRDEGV 79
L S + +G+
Sbjct: 242 ---SLTTLCSEIFLTKGL 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 241 SIPSLERALHAYNLHPSPTPFDMSSIPLSTITTS 274
++ L+ +L Y + D S P I +
Sbjct: 21 ALKKLQASLKLY----AD---D--SAPALAIKAT 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 3.9
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 13/136 (9%)
Query: 271 ITTSDPTEMADRLRTPSGGVASEPTAQATARVESYYEKLSAALPEIANLPGTLFKSAAPV 330
+ T EMA L G+ + P + L+ L + L K +
Sbjct: 694 VRTFSQKEMAFNLL----GLLT-PEVVELCQKSPVMADLNGGLQFVPELKEFTAK----L 744
Query: 331 RRDLRSVFH-SYAVSMRRQLDVHSASGVGLEDLEISLSDQMAKVNKPNF--LALWEEAET 387
R++L AVS+ L+ +G + + Q + +F L +++
Sbjct: 745 RKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQ-VK 803
Query: 388 DESMNEMEDTFCLSKM 403
+ E+E L ++
Sbjct: 804 QIAPAELEGLLDLERV 819
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 27.3 bits (61), Expect = 5.9
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 184 ENATVRAAAVTAMAQFG------ALCQM--DGDDEVRDRA 215
++ VR+ A ++ Q G A+ ++ G R A
Sbjct: 85 DSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVA 124
Score = 26.5 bits (59), Expect = 9.7
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 184 ENATVRAAAVTAMAQFG------ALCQM--DGDDEVRDRA 215
E+ +R AA + F L ++ D VR A
Sbjct: 54 EDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGA 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.363
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,165,931
Number of extensions: 378292
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 48
Length of query: 421
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 325
Effective length of database: 4,021,377
Effective search space: 1306947525
Effective search space used: 1306947525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)