RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8503
(421 letters)
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 87.1 bits (215), Expect = 4e-19
Identities = 22/197 (11%), Positives = 68/197 (34%), Gaps = 33/197 (16%)
Query: 1 MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP 60
+ + + + +++ S++++ +++ ++ + +E+ +F V AI +K
Sbjct: 323 VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE 382
Query: 61 RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIAD 120
+ ++ L +++ + +
Sbjct: 383 QSAERCVSTLLDLIQTKVNY---------------------------------VVQEAIV 409
Query: 121 TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR 180
I I + P E+ +A LCE ++ + ++ ++G+ R + +
Sbjct: 410 VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEG 469
Query: 181 VILENATVRAAAVTAMA 197
E+ V+ +TA+
Sbjct: 470 FHDESTQVQLTLLTAIV 486
Score = 29.4 bits (65), Expect = 0.95
Identities = 30/257 (11%), Positives = 86/257 (33%), Gaps = 14/257 (5%)
Query: 2 ISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFPR 61
D N I LA+ T+ + + L + + + + + + L +
Sbjct: 92 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 151
Query: 62 --KHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIA 119
+ ++ L ++ D V S+++ S + L ++ + L +
Sbjct: 152 MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC 211
Query: 120 D--TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFI 177
I I++ L++ +D E S+ R+ L + +
Sbjct: 212 TEWGQIFILDC--------LSNYNPK-DDREAQSICERVTPRLSHANSAVVLSAVKVLMK 262
Query: 178 YNRVILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEP 237
+ ++ +++ + +A + G+ EV+ A +++ + ++++ I
Sbjct: 263 FLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPEILKQEIKVF 321
Query: 238 LMVSIPSLERALHAYNL 254
+ + L ++
Sbjct: 322 FVKYNDPIYVKLEKLDI 338
Score = 29.4 bits (65), Expect = 0.98
Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 18/215 (8%)
Query: 7 RSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALC-LKFPRKHAV 65
+ + L + K+ D + + +FV + D ++ A+R + ++ +
Sbjct: 63 KKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEY 118
Query: 66 LMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGL------EYKASIA 119
L L L+DE + + +KL V Q + S L A+
Sbjct: 119 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAV 178
Query: 120 DTIITIIEENPEAKETGLAH-----LCEFIEDCEHTSLAVRILHLLGKEGPR-AKQPSKY 173
+ I E +P + L L + +C + IL L P+ ++
Sbjct: 179 AALSEISESHPNSNLLDLNPQNINKLLTALNECTE-WGQIFILDCLSNYNPKDDREAQSI 237
Query: 174 IRFIYNRVILENATVRAAAVTAMAQFGALCQMDGD 208
+ R+ N+ V +AV + +F L D D
Sbjct: 238 CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 272
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 61.7 bits (149), Expect = 7e-11
Identities = 15/162 (9%), Positives = 52/162 (32%), Gaps = 34/162 (20%)
Query: 1 MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP 60
+ ++ + S+ A+ L S+ +++ ++ +++ + +V + L K+
Sbjct: 369 LKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA 428
Query: 61 RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIAD 120
+ +D ++ + +G +
Sbjct: 429 -----------------VDYTWYVDTILN----------------LIRIAGDYVSEEVWY 455
Query: 121 TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRI-LHLLG 161
+I I+ + + + E ++ V++ ++LG
Sbjct: 456 RVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILG 497
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal
subdomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 51.3 bits (123), Expect = 5e-09
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 369 QMAKVNKPNFLALWEEAETDESMNEMEDTFCLSKMESIQEAVASIL 414
+ KV K NF A W+E + E E+TF LS +++++EAV +I+
Sbjct: 1 HIQKVMKLNFEAAWDEVGDE---FEKEETFTLSTIKTLEEAVGNIV 43
Score = 47.1 bits (112), Expect = 2e-07
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 38 SEISDEFKIVVV----EAIRALCLKF-----PRKHAVLMNFLSAMLRDEGVFRGGIDVLV 88
E + F + + EA+ + R V N + L GVFRGG D+LV
Sbjct: 21 FEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILV 80
Query: 89 RSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITII 126
RS+L VTMQ+T RS D I+ +
Sbjct: 81 RSRLL--LLDTVTMQVTARSLE-----ELPVDIILASV 111
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal
subdomain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 114
Score = 30.1 bits (68), Expect = 0.18
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 78 GVFR-GGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIADTIITIIEE 128
G+ + +L +LT+R++ +++ + ++ E
Sbjct: 67 GIIHTKTTQIGCLLRLE-PNLQAQMYRLTLRTSKD-----TVSQRLCELLSE 112
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 29.3 bits (64), Expect = 1.2
Identities = 35/238 (14%), Positives = 75/238 (31%), Gaps = 14/238 (5%)
Query: 1 MISDSNRSIATLAITTLLKTGSESSVDRLMKQIATFVSEISDEFKIVVVEAIRALCLKFP 60
S S SI LA+ +L + G + ++ + + S + V A AL
Sbjct: 823 KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV 882
Query: 61 RKHAVLMNFLSAMLRDEGVFRGGIDVLVRSKLAVSADTGVTMQLTVRSTSGLEYKASIAD 120
+ F+ + + + + ++ ++ ++ G+ Y +I
Sbjct: 883 GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGL-----------KPYVENIWA 931
Query: 121 TIITIIEENPEAKETGLAHLCEFIEDCEHTSLAVRILHLLGKEGPRAKQPSKYIRFIYNR 180
++ E E +A + + +L R+ L A+ + +
Sbjct: 932 LLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSV--VTAVKFT 989
Query: 181 VILENATVRAAAVTAMAQFGALCQMDGDDEVRDRATYYHSILASQNKQLIQDYIIEPL 238
+ + + F + D D VR A + A LI+D + L
Sbjct: 990 ISDHPQPIDPLLKNCIGDFLKTLE-DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVL 1046
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal
domain, first subdomain {Human (Homo sapiens) [TaxId:
9606]}
Length = 163
Score = 27.0 bits (60), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 301 RVESYYEKLSAALPEIANLPGTLFKSAA 328
R E + E+L+ A+PE L G LFKS+
Sbjct: 10 RQEIFQEQLA-AVPEFRGL-GPLFKSSP 35
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 27.0 bits (59), Expect = 4.6
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 152 LAVRIL--HLLGKEGPRAKQPSKYIRFIYNRVILENATVRAAAVTAMAQFGALCQMDGDD 209
L+ +I+ HL ++ Y+R +RV +++AT A AM QF G
Sbjct: 37 LSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDAT----AQMAMLQF----ISSGLP 88
Query: 210 EVRDRATYY--HSILA 223
+V +T + H I A
Sbjct: 89 KVAVPSTIHCDHLIEA 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.363
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,416,798
Number of extensions: 63237
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 17
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)