BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8504
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 156 bits (394), Expect = 5e-38, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 108/145 (74%), Gaps = 5/145 (3%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
WD KSQ VG+ G L++ S+ AGLG CS++GI FNA+TTQ++PFLALG+ VDD+FL+
Sbjct: 460 WDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLA 519
Query: 67 KTFAKYTSKNQ---FDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQL 123
F++ T +N+ F+ TG L++TG S+ L+S+ AFF A+LIPIPALR F+LQ
Sbjct: 520 HAFSE-TGQNKRIPFEDR-TGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQA 577
Query: 124 AILILFNMFVLLLVYPAIVSLDLRR 148
A++++FN ++LL++PAI+S+DL R
Sbjct: 578 AVVVVFNFAMVLLIFPAILSMDLYR 602
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 155 bits (393), Expect = 7e-38, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 108/145 (74%), Gaps = 5/145 (3%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
WD KSQ VG+ G L++ S+ AGLG CS++GI FNA+TTQ++PFLALG+ VDD+FL+
Sbjct: 460 WDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLA 519
Query: 67 KTFAKYTSKNQ---FDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQL 123
F++ T +N+ F+ TG L++TG S+ L+S+ AFF A+LIPIPALR F+LQ
Sbjct: 520 HAFSE-TGQNKRIPFEDR-TGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQA 577
Query: 124 AILILFNMFVLLLVYPAIVSLDLRR 148
A++++FN ++LL++PAI+S+DL R
Sbjct: 578 AVVVVFNFAMVLLIFPAILSMDLYR 602
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 155 bits (391), Expect = 1e-37, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 108/145 (74%), Gaps = 5/145 (3%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
WD KSQ VG+ G L++ S+ AGLG CS++GI FNA+TTQ++PFLALG+ VDD+FL+
Sbjct: 446 WDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLA 505
Query: 67 KTFAKYTSKNQ---FDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQL 123
F++ T +N+ F+ TG L++TG S+ L+S+ AFF A+LIPIPALR F+LQ
Sbjct: 506 HAFSE-TGQNKRIPFEDR-TGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQA 563
Query: 124 AILILFNMFVLLLVYPAIVSLDLRR 148
A++++FN ++LL++PAI+S+DL R
Sbjct: 564 AVVVVFNFAMVLLIFPAILSMDLYR 588
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 146 bits (368), Expect = 5e-35, Method: Composition-based stats.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
WD +SQ VG+ G L++ ++ +GLG C++LGI FNA+TTQ++PFLALG+ VDD+FL+
Sbjct: 416 WDCAQSQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDIFLLA 475
Query: 67 KTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAIL 126
F K E G LR TG S+ L+SV VAFF A+L+PIPALR F+LQ AI+
Sbjct: 476 HAFTKAPPDTPL-PERMGECLRSTGTSVALTSVNNMVAFFMAALVPIPALRAFSLQAAIV 534
Query: 127 ILFNMFVLLLVYPAIVSLDLRR 148
+ N ++LV+PAI+SLDLRR
Sbjct: 535 VGCNFAAVMLVFPAILSLDLRR 556
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 145 bits (367), Expect = 7e-35, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 105/146 (71%), Gaps = 5/146 (3%)
Query: 3 LIKYWDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDM 62
L+++ DPV+ Q+ VG+ G L+ FS AGLG ++LGI FNA++TQ+VPFLALGL VD +
Sbjct: 447 LLRWRDPVRGQSSVGVAGVLLMCFSTAAGLGLSALLGIVFNAASTQVVPFLALGLGVDHI 506
Query: 63 FLITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQ 122
F++T +A+ + Q T ++L+K G SI+ S+ + +FF+A+ IP+PAL+VF LQ
Sbjct: 507 FMLTAAYAESNRREQ-----TKLILKKVGPSILFSACSTAGSFFAAAFIPVPALKVFCLQ 561
Query: 123 LAILILFNMFVLLLVYPAIVSLDLRR 148
AI++ N+ LLV+PA++SLDLRR
Sbjct: 562 AAIVMCSNLAAALLVFPAMISLDLRR 587
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 139 bits (350), Expect = 6e-33, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
WD +SQ VG+ G L++ ++ +GLG C++LGI FNA+TTQ++PFLALG+ VDD+FL+
Sbjct: 416 WDCAQSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDVFLLA 475
Query: 67 KTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAIL 126
F + E G L++TG S++L+S+ AF A+L+PIPALR F+LQ AI+
Sbjct: 476 HAFTEALPGTPL-QERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALRAFSLQAAIV 534
Query: 127 ILFNMFVLLLVYPAIVSLDLRR 148
+ ++LV+PAI+SLDLRR
Sbjct: 535 VGCTFVAVMLVFPAILSLDLRR 556
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 135 bits (339), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
WD KSQ VG+ G L++ S+ AGLG CS+LG+ FNA+TTQ++P LALG+ VDDMFL+
Sbjct: 443 WDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATTQVLPSLALGIGVDDMFLLG 502
Query: 67 KTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAIL 126
+F + S F E TG LR+TG S+ L+SV +AFF A+L+PIPALR F+LQ A++
Sbjct: 503 HSFTETRSNIPF-KERTGDCLRRTGTSVALTSVNNMIAFFMAALVPIPALRAFSLQAAVV 561
Query: 127 ILFNMFVLLLVYPAIVSLDLRR 148
++FN + LL++PAI+SLDL R
Sbjct: 562 VVFNFAMALLIFPAILSLDLHR 583
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
+S G+ + G +++F+ +AGLG + GI FNA+TTQIVPFL LG+ VD+MF++ +
Sbjct: 683 TESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNY 742
Query: 70 AKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILF 129
+E I++R+TG+SI+ +S+ ++F + +L+PIPALR F Q +IL+ F
Sbjct: 743 RDVVKLAGGHAEMA-ILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTF 801
Query: 130 NMFVLLLVYPAIVSLDLRRSR 150
N +L +YPAI+S+DLRR +
Sbjct: 802 NFIAILTIYPAIISIDLRRKK 822
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
V+S+A +G+ G ++ ++LA +GF S LG+P + Q+VPFL L + D++F+ +
Sbjct: 662 VESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLEY 721
Query: 70 AKYTSKNQFDSECT-GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILIL 128
+ E G L S++L S+ +++ FF +L P+PA+R F L + I+
Sbjct: 722 QRLPRMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAII 781
Query: 129 FNMFVLLLVYPAIVSLDLRRSR 150
+ + + + A++SLD +R
Sbjct: 782 LDFLLQMTAFVALLSLDSKRQE 803
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
V S+A +G+ G ++ +++A +GF S LGI + Q+VPFL L + D++F+ +
Sbjct: 662 VDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEY 721
Query: 70 AKYTSKNQFDSECT-GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILIL 128
+ + E G L + S++L S+ +++ FF +L P+PA+R F L + ++
Sbjct: 722 QRLPRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVI 781
Query: 129 FNMFVLLLVYPAIVSLDLRRSR 150
+ + + + A++SLD +R
Sbjct: 782 LDFLLQMSAFVALLSLDSKRQE 803
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
V S+ +GI G ++ S+ LG S +G+P +++PFL L + VD++F++ +T+
Sbjct: 650 VDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQTY 709
Query: 70 AKYTS-KNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILIL 128
+ + + + G VL + S+ LSS ++VAFF L +PA+ F+L + +L
Sbjct: 710 QRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAVL 769
Query: 129 FNMFVLLLVYPAIVSLDLRRSR 150
+ + + + +++ LD++R
Sbjct: 770 IDFLLQITCFVSLLGLDIKRQE 791
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
V S+ +GI G ++ S+ LG S +G+P +++PFL L + VD++F++ +T+
Sbjct: 650 VDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVLAVGVDNIFILVQTY 709
Query: 70 AKYT--SKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILI 127
+ + D + G +L + ++ LSS ++ AFF +L +PA+ F+L + +
Sbjct: 710 QRDERLQEETLDQQ-LGRILGEVAPTMFLSSFSETSAFFFGALSSMPAVHTFSLFAGMAV 768
Query: 128 LFNMFVLLLVYPAIVSLDLRRSR 150
L + + + + +++ LD++R
Sbjct: 769 LIDFLLQITCFVSLLGLDIKRQE 791
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
V S+ +GI G ++ S+ LG S +G+P +++PFL L + VD++F++ + +
Sbjct: 650 VDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAY 709
Query: 70 AKYTS-KNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILIL 128
+ + + + G VL + S+ LSS ++VAFF +L +PA+ F+L + +
Sbjct: 710 QRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVF 769
Query: 129 FNMFVLLLVYPAIVSLDLRRSR 150
+ + + + +++ LD++R
Sbjct: 770 IDFLLQITCFVSLLGLDIKRQE 791
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 32 LGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECT-GIVLRKT 90
+GF S LG+P + Q+VPFL L + D++F+ + + E G L
Sbjct: 684 MGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLEYQRLPRMPGEQREAHIGRTLGSV 743
Query: 91 GLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150
S++L S+ +++ FF +L +PA+R F L + I+F+ + + + A++SLD +R
Sbjct: 744 APSMLLCSLSEAICFFLGALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQE 803
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 27 SILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIV 86
SI+ GF ++ G+ +++PFL L + +D++FLIT + + + S I+
Sbjct: 598 SIVCAAGFLTLFGLKSTLIIAEVIPFLILAIGIDNIFLITHEYDRNCEQKPEYSIDQKII 657
Query: 87 --LRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSL 144
+ + SI++S +C++ F A+ + +PA+ F + + ++FN + L Y +I+SL
Sbjct: 658 SAIGRMSPSILMSLLCQTGCFLIAAFVTMPAVHNFAIYSTVSVIFNGVLQLTAYVSILSL 717
Query: 145 DLRRSR 150
+RS
Sbjct: 718 YEKRSN 723
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D ++++ V + G ++ S+++G G LG+PF PFL LG+ VDDMF++
Sbjct: 362 DCIRNKMCVAVFGVFSVAMSVVSGFGLMLHLGVPFVIIVAN-SPFLILGVGVDDMFIMIS 420
Query: 68 TFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILI 127
+ K TS ++ E K +SI ++++ +AF++ +++ F + +
Sbjct: 421 AWQK-TSLSESIRERLSNSYSKVAVSITITTITNVLAFYTGITSSFRSVQYFCIYTGTTL 479
Query: 128 LFNMFVLLLVYPAIVSLDLRRS 149
LF F + + A+++LD +R
Sbjct: 480 LFCYFYSITCFGAVMALDGKRE 501
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 307 DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 366
Query: 68 TF--------AKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVAFFSASLIPIPALRV 118
+ K SE I+ T L IIL + +F+ +PA++
Sbjct: 367 SVVSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIIL------IGYFTL----VPAIQE 416
Query: 119 FNLQLAILILFNMFVLLLVYPAIVSLDLRR 148
F L + ++ + F+ +L + ++S+D+RR
Sbjct: 417 FCLFAVVGLVSDFFLQMLFFTTVLSIDIRR 446
>sp|Q6R5J2|DISP1_DANRE Protein dispatched homolog 1 OS=Danio rerio GN=disp1 PE=2 SV=1
Length = 1464
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 41 PFNASTTQIVPFLALGLSVDDMFLITKT--FAKYTSKNQFDSECTGIVLRKTGLSIILSS 98
PF T I+ +G+ DD F++ + K+ N SE I L+ LS+ ++S
Sbjct: 538 PFMNLTALII---LVGIGADDAFVLCDVWNYTKFDKPNSELSETVSITLQHAALSMFVTS 594
Query: 99 VCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147
+ AF++ + I A+R F + IL N +++ PA+V L R
Sbjct: 595 FTTAAAFYANYVSNITAIRCFGVYAGTAILVNYILMVTWLPAVVVLHER 643
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 13/147 (8%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 307 DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 366
Query: 68 TFAKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVA-----FFSASLIPIPALRVFNL 121
+ D E + LR GLS S+ K+VA +PA++ F L
Sbjct: 367 SVV----STPVDLE---VKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQEFCL 419
Query: 122 QLAILILFNMFVLLLVYPAIVSLDLRR 148
+ ++ + F+ +L + ++S+D+RR
Sbjct: 420 FAVVGLVSDFFLQMLFFTTVLSIDIRR 446
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 307 DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 366
Query: 68 TF--------AKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVAFFSASLIPIPALRV 118
+ K SE I+ T L IIL + +F+ +PA++
Sbjct: 367 SVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIIL------IGYFTL----VPAIQE 416
Query: 119 FNLQLAILILFNMFVLLLVYPAIVSLDLRR 148
F L + ++ + F+ +L + ++S+D+RR
Sbjct: 417 FCLFAVVGLVSDFFLQMLFFTTVLSIDIRR 446
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 307 DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 366
Query: 68 TF--------AKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVAFFSASLIPIPALRV 118
+ K SE I+ T L I+L + +F+ +PA++
Sbjct: 367 SVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVL------IGYFTL----VPAIQE 416
Query: 119 FNLQLAILILFNMFVLLLVYPAIVSLDLRR 148
F L + ++ + F+ +L + ++S+D+RR
Sbjct: 417 FCLFAVVGLVSDFFLQMLFFTTVLSIDIRR 446
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLIT 66
+D ++++ V G ++++G G +G+PF PFL LG+ VDDMF++
Sbjct: 405 FDCIRNKMCVAAFGVISAFLAVVSGFGLLLHIGVPFVIIVAN-SPFLILGVGVDDMFIMI 463
Query: 67 KTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAIL 126
+ K + + V K +SI ++++ +A ++ + +++ F + +
Sbjct: 464 SAWHKTNLADDIRERMSN-VYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMT 522
Query: 127 ILFNMFVLLLVYPAIVSLDLRR 148
+LF F + + A ++LD +R
Sbjct: 523 LLFCYFYNITCFGAFMALDGKR 544
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
VKSQ +G + + +A L PF I+PFL + + D+MFL+ K++
Sbjct: 289 VKSQPFIGFFAMFNATMATIASTSLLLYLQYPF-LPLVFIMPFLVVSIGTDNMFLMLKSW 347
Query: 70 AKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILF 129
+ T K+ + + L ++ S+ L+S+ ++F S+ A+RVF A+ ILF
Sbjct: 348 -RMTKKSSNEEQRYIHALTESAASLFLTSLTDGLSFAIGSISDFHAVRVFCTYCAMAILF 406
Query: 130 NMFVLLLVYPAIVSLDLRRS 149
+ + A++SL RR
Sbjct: 407 MFLFQVTFFNAVMSLCCRRE 426
>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2
SV=2
Length = 888
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D V+S+ +G+LG IS + L G ++ G +N ST VPF+ LG + F +
Sbjct: 291 DCVRSKPWLGLLGLVTISLATLTAAGIINLTGGKYN-STFLGVPFVMLGHGLYGTFEMLS 349
Query: 68 TFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFF--SASLIPIPALRVFNLQLAI 125
++ K T ++Q E T V + LS L++ V F ++ I A R+F I
Sbjct: 350 SWRK-TREDQHVKERTAEVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCI 408
Query: 126 LILFNMFVLLLVY 138
ILFN +L Y
Sbjct: 409 AILFNYLYVLSFY 421
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 307 DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 366
Query: 68 TF--------AKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVAFFSASLIPIPALRV 118
+ K SE I+ T L IIL + +F+ +PA++
Sbjct: 367 SVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIIL------IGYFTL----VPAIQE 416
Query: 119 FNLQLAILILFNMFVLLLVYPAIVSLDLRR 148
F L + ++ + F+ + + ++S+D+RR
Sbjct: 417 FCLFAVVGLVSDFFLQMFFFTTVLSIDIRR 446
>sp|Q96F81|DISP1_HUMAN Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=2 SV=3
Length = 1524
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 41 PFNASTTQIVPFLALGLSVDDMFLITKT--FAKYTSKNQFDSECTGIVLRKTGLSIILSS 98
PF T I+ +G+ DD F++ + K+ + SE I L+ LS+ ++S
Sbjct: 556 PFMNLTALII---LVGIGADDAFVLCDVWNYTKFDKPHAETSETVSITLQHAALSMFVTS 612
Query: 99 VCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147
+ AF++ + I A+R F + IL N +++ PA+V L R
Sbjct: 613 FTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPAVVVLHER 661
>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2
SV=2
Length = 888
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D V+S+ +G+LG IS + L G ++ G +N ST VPF+ LG + F +
Sbjct: 291 DCVRSKPWLGLLGLVTISLATLTAAGIINLTGGKYN-STFLGVPFVMLGHGLYGTFEMLS 349
Query: 68 TFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFF--SASLIPIPALRVFNLQLAI 125
++ K T ++Q E T V + LS L++ V F ++ I A R+F I
Sbjct: 350 SWRK-TREDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCI 408
Query: 126 LILFNMFVLLLVY 138
I FN +L Y
Sbjct: 409 AIFFNYLYVLSFY 421
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 307 DMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 366
Query: 68 TF--------AKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVAFFSASLIPIPALRV 118
+ K SE I+ T L IIL + +F+ +PA++
Sbjct: 367 SVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIIL------IGYFTL----VPAIQE 416
Query: 119 FNLQLAILILFNMFVLLLVYPAIVSLDLRR 148
F L + ++ + F+ + + ++S+D+RR
Sbjct: 417 FCLFAVVGLVSDFFLQMPFFTTVLSIDIRR 446
>sp|Q3TDN0|DISP1_MOUSE Protein dispatched homolog 1 OS=Mus musculus GN=Disp1 PE=1 SV=2
Length = 1521
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 41 PFNASTTQIVPFLALGLSVDDMFLITKT--FAKYTSKNQFDSECTGIVLRKTGLSIILSS 98
PF T I+ +G+ DD F++ + K+ SE + L+ LS+ ++S
Sbjct: 555 PFMNLTALII---LVGIGADDAFVLCDVWNYTKFDKPRAETSEAVSVTLQHAALSMFVTS 611
Query: 99 VCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147
+ AF++ + I A+R F + IL N +++ PA++ L R
Sbjct: 612 FTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPAVIVLHER 660
>sp|O42335|PTC1_CYNPY Protein patched homolog 1 (Fragment) OS=Cynops pyrrhogaster GN=PTC1
PE=2 SV=1
Length = 257
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGI 40
WD KSQ VG+ G L++ S+ AGLG CS++GI
Sbjct: 223 WDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGI 256
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITK 67
D VKS+ G+ + + S+L +G C++ G+ + +I P+L + + ++++ ++TK
Sbjct: 305 DLVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTK 364
Query: 68 TF--------AKYTSKNQFDSECTGIVLR-KTGLSIILSSVCKSVAFFSASLIPIPALRV 118
+ K +E I+ T L IIL + +F+ +PA++
Sbjct: 365 SVVSTPVDLEVKLRIAQGLRNESWFIMKNMATELGIIL------IGYFTL----VPAIQE 414
Query: 119 FNLQLAILILFNMFVLLLVYPAIVSLDLRR 148
F L + ++ + F+ + + ++S+D+RR
Sbjct: 415 FCLFAVVGLVSDFFLQMFFFTTVLSIDIRR 444
>sp|O42334|PTC2_CYNPY Protein patched homolog 2 (Fragment) OS=Cynops pyrrhogaster GN=PTC2
PE=2 SV=1
Length = 255
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGI 40
WD KSQ VG+ G L++ S+ +GLG CS+LGI
Sbjct: 221 WDCTKSQGAVGLAGVLLVALSVASGLGLCSLLGI 254
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans
GN=ncr-1 PE=1 SV=2
Length = 1383
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF 69
V S+ +G+L + S G S+ GI + + F+ L V F++ K +
Sbjct: 661 VHSRICLGMLSVIINLLSSFCSWGIFSMFGIHPVKNALVVQFFVVTLLGVCRTFMVVKYY 720
Query: 70 AK------YTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQL 123
A+ Y S +Q E G+V+ T ++ SS+ + +FF +PA+R F L
Sbjct: 721 AQQRVSMPYMSPDQC-PEIVGMVMAGTMPAMFSSSLGCAFSFFIGGFTDLPAIRTFCLYA 779
Query: 124 AILILFNMFVLLLVYPAIVSLDLRR 148
+ +L ++ + ++ A+ D +R
Sbjct: 780 GLAVLIDVVLHCTIFLALFVWDTQR 804
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans
GN=ncr-2 PE=3 SV=2
Length = 1274
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 27 SILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAK--------YTSKNQF 78
S+ +G S+ G+ + ++ F+ L ++ +F+I +TF S +
Sbjct: 637 SVWCSIGMFSLFGVHATDNAIVVLFFVITCLGINRIFVIIRTFQANGHCYGLPNISYREM 696
Query: 79 DSECTGIVLRKTGLSIILSSVCKSVAFFSASLIP-----IPALRVFNLQLAILILFNMFV 133
+ + ++ R + + S +C + F + ++P +PA+ VF + IL +
Sbjct: 697 NHRISNVMRRSIPIVLTNSLICSTCLFLAGGVLPYVSVSMPAVEVFARHAGLAILMDTAF 756
Query: 134 LLLVYPAIVSLDLRR 148
LLV + D RR
Sbjct: 757 YLLVMLPLFQYDARR 771
>sp|Q8CIP5|DISP2_MOUSE Protein dispatched homolog 2 OS=Mus musculus GN=Disp2 PE=2 SV=1
Length = 1345
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 84 GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVS 143
G + G +++S + S AF+ + L +PA+R F L + +L +M + LL PA V
Sbjct: 538 GRTMHHFGYLLLVSGLTTSAAFYGSYLSRLPAVRCFALFMGTAVLVHMGLTLLWLPATVV 597
Query: 144 LDLR 147
L R
Sbjct: 598 LHER 601
>sp|Q9VNJ5|DISP_DROME Protein dispatched OS=Drosophila melanogaster GN=disp PE=1 SV=1
Length = 1218
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
Query: 14 AGVGILGCCLISFSI-LAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKY 72
A + ++ C I FS+ LA + +L F + + +G+ DD+FL K +
Sbjct: 469 AFITLMSCVAICFSLGLAYFFYAIVLEFEFFPYMNLLAVVVIIGIGADDVFLFLKIWHCV 528
Query: 73 TSKNQFDSECT-------------------------GIVLRKTGLSIILSSVCKSVAFFS 107
++ +F + CT + +R S+ ++S+ + AF++
Sbjct: 529 LTE-RFSNRCTLTTQSQSALPTLENSDHTESLENIMALTMRHAAASMFVTSLTTAGAFYA 587
Query: 108 ASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSL 144
+ I A++ F + +++ N +++ PA VS+
Sbjct: 588 SYSSSITAIKCFGIFAGTVVVTNYLLMITWLPASVSI 624
>sp|P24181|ACRF_ECOLI Acriflavine resistance protein F OS=Escherichia coli (strain K12)
GN=acrF PE=2 SV=2
Length = 1034
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 23 LISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFA------KYTSKN 76
L +F+ILA G+ SI + T LA+GL VDD ++ + K K
Sbjct: 377 LGTFAILAAFGY-SI------NTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKE 429
Query: 77 QFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLL 136
+ + I G++++LS+V +AFF S I R F++ + + ++ V L+
Sbjct: 430 ATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAI--YRQFSITIVSAMALSVLVALI 487
Query: 137 VYPAIVSLDLR 147
+ PA+ + L+
Sbjct: 488 LTPALCATLLK 498
>sp|Q8FCI8|MDTF_ECOL6 Multidrug resistance protein MdtF OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=mdtF PE=3 SV=1
Length = 1037
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 23/129 (17%)
Query: 23 LISFSILAGLGFC----SILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQF 78
L +F+IL+ +GF ++ G+ LA+GL VDD ++ + + ++++
Sbjct: 377 LGTFAILSAVGFTINTLTMFGM-----------VLAIGLLVDDAIVVVENVERVIAEDKL 425
Query: 79 -DSECT----GIVLRK-TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMF 132
E T G + R G++++LS+V +AF S + I R F++ L +L ++F
Sbjct: 426 PPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEI--YRQFSITLISSMLLSVF 483
Query: 133 VLLLVYPAI 141
V + + PA+
Sbjct: 484 VAMSLTPAL 492
>sp|P31224|ACRB_ECOLI Acriflavine resistance protein B OS=Escherichia coli (strain K12)
GN=acrB PE=1 SV=1
Length = 1049
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 23 LISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFD-SE 81
L +F++LA GF SI + T LA+GL VDD ++ + + ++ E
Sbjct: 377 LGTFAVLAAFGF-SI------NTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKE 429
Query: 82 CTGIVLRK-----TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLL 136
T + + G++++LS+V +AFF S I R F++ + + ++ V L+
Sbjct: 430 ATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAI--YRQFSITIVSAMALSVLVALI 487
Query: 137 VYPAIVSLDLR 147
+ PA+ + L+
Sbjct: 488 LTPALCATMLK 498
>sp|P37637|MDTF_ECOLI Multidrug resistance protein MdtF OS=Escherichia coli (strain K12)
GN=mdtF PE=1 SV=1
Length = 1037
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 23/129 (17%)
Query: 23 LISFSILAGLGFC----SILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQF 78
L +F+IL+ +GF ++ G+ LA+GL VDD ++ + + ++++
Sbjct: 377 LGTFAILSAVGFTINTLTMFGM-----------VLAIGLLVDDAIVVVENVERVIAEDKL 425
Query: 79 -DSECT----GIVLRK-TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMF 132
E T G + R G++++LS+V +AF S + I R F++ L +L ++F
Sbjct: 426 PPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEI--YRQFSITLISSMLLSVF 483
Query: 133 VLLLVYPAI 141
V + + PA+
Sbjct: 484 VAMSLTPAL 492
>sp|Q8X3J5|MDTF_ECO57 Multidrug resistance protein MdtF OS=Escherichia coli O157:H7
GN=mdtF PE=3 SV=2
Length = 1037
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 23/129 (17%)
Query: 23 LISFSILAGLGFC----SILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQF 78
L +F+IL+ +GF ++ G+ LA+GL VDD ++ + + ++++
Sbjct: 377 LGTFAILSAVGFTINTLTMFGM-----------VLAIGLLVDDAIVVVENVERVIAEDKL 425
Query: 79 -DSECT----GIVLRK-TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMF 132
E T G + R G++++LS+V +AF S + I R F++ L +L ++F
Sbjct: 426 PPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEI--YRQFSITLISSMLLSVF 483
Query: 133 VLLLVYPAI 141
V + + PA+
Sbjct: 484 VAMSLTPAL 492
>sp|P24177|ACRD_ECOLI Probable aminoglycoside efflux pump OS=Escherichia coli (strain
K12) GN=acrD PE=3 SV=3
Length = 1037
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 25 SFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFD-SECT 83
+FS+L G+ + T LA+GL VDD ++ + + S+ E T
Sbjct: 379 TFSVLYAFGYSV-------NTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREAT 431
Query: 84 GIVLRK-----TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVY 138
+ + G++++LS+V +AFF + I R F++ + ++ ++ V +++
Sbjct: 432 RKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAI--YRQFSITIVAAMVLSVLVAMILT 489
Query: 139 PAIVSLDLR 147
PA+ + L+
Sbjct: 490 PALCATLLK 498
>sp|A8GM76|SECF_RICAH Protein translocase subunit SecF OS=Rickettsia akari (strain
Hartford) GN=secF PE=3 SV=1
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 1 MALIKY-WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSV 59
+A++ Y W + G+GIL L+ ILA LGF SI + FN ST V +G SV
Sbjct: 152 LAIMVYIWVRFEWYFGLGIL-IALVHDVILA-LGFMSITKLDFNLSTIAAV-LTIIGYSV 208
Query: 60 DDMFL----ITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPA 115
+D + I + KY KN +E + + +T IL+ + +A + L A
Sbjct: 209 NDSVVIYDRIRENLRKYHKKNI--TEIINLSINETLSRTILTVITTLLANLALMLFGGEA 266
Query: 116 LRVFNL 121
+R F++
Sbjct: 267 IRSFSV 272
>sp|Q831R1|UPPP1_ENTFA Undecaprenyl-diphosphatase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=uppP PE=3 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 9 PVKSQAGVGILGCCLISFSILAGLGFCSILGIP--FNASTTQIVPFLALG 56
P S++G ILG LI S F LGIP F AS +I FLA G
Sbjct: 168 PGTSRSGATILGAILIGASRFVATEFSFFLGIPVMFGASFLKIFKFLAKG 217
>sp|P52002|MEXB_PSEAE Multidrug resistance protein MexB OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mexB
PE=1 SV=2
Length = 1046
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 21/134 (15%)
Query: 23 LISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSEC 82
L +F +LA GF SI + T LA+GL VDD ++ + + ++
Sbjct: 377 LGTFGVLAAFGF-SI------NTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPRE 429
Query: 83 TGIVLRKT---------GLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFV 133
RK+ G++++LS+V +AFF S I R F++ + + ++ V
Sbjct: 430 AA---RKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGVI--YRQFSITIVSAMALSVIV 484
Query: 134 LLLVYPAIVSLDLR 147
L++ PA+ + L+
Sbjct: 485 ALILTPALCATMLK 498
>sp|A7MBM2|DISP2_HUMAN Protein dispatched homolog 2 OS=Homo sapiens GN=DISP2 PE=2 SV=2
Length = 1401
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 74 SKNQFDS----ECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILF 129
SK+Q S + G + G +++S + S AF+++ L +PA+R L + +L
Sbjct: 569 SKSQLPSGGLAQRVGRTMHHFGYLLLVSGLTTSAAFYASYLSRLPAVRCLALFMGTAVLV 628
Query: 130 NMFVLLLVYPAIVSLDLR 147
++ + L+ PA L R
Sbjct: 629 HLALTLVWLPASAVLHER 646
>sp|A8GQT5|SECF_RICRS Protein translocase subunit SecF OS=Rickettsia rickettsii (strain
Sheila Smith) GN=secF PE=2 SV=1
Length = 308
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFL-- 64
W + G GIL L+ ILA LGF S+ + FN ST V +G SV+D +
Sbjct: 159 WVRFEWYFGFGIL-IALVHDVILA-LGFMSMTKLDFNLSTIAAV-LTIIGYSVNDSVVIY 215
Query: 65 --ITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQ 122
I + KY KN +E + + +T IL+ + +A + L A+R F
Sbjct: 216 DRIRENLRKYHKKNI--TEIINLSINETLSRTILTVITTLLANLALILFGGEAIRSF--- 270
Query: 123 LAILILFNMFV 133
+IL+ F + V
Sbjct: 271 -SILVFFGIIV 280
>sp|Q92JB3|SECF_RICCN Protein translocase subunit SecF OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=secF PE=3 SV=1
Length = 308
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFL-- 64
W + G+GIL L+ ILA LGF S+ + FN ST V +G SV+D +
Sbjct: 159 WVRFEWYFGLGIL-IALVHDVILA-LGFMSMTKLDFNLSTIAAV-LTIIGYSVNDSVVIY 215
Query: 65 --ITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNL 121
I + KY KN +E + + +T IL+ + +A + L A+R F++
Sbjct: 216 DRIRENLRKYHKKNI--TEIINLSINETLSRTILTVITTLLANLALILFGGEAIRSFSV 272
>sp|Q4UKA5|SECF_RICFE Protein translocase subunit SecF OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=secF PE=3 SV=1
Length = 308
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFL-- 64
W + G+GIL L+ ILA LGF S+ + FN ST V +G SV+D +
Sbjct: 159 WVRFEWYFGLGIL-IALVHDVILA-LGFMSMTKLDFNLSTIAAV-LTIIGYSVNDSVVIY 215
Query: 65 --ITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNL 121
I + KY KN +E + + +T IL+ + +A + L A+R F++
Sbjct: 216 DRIRENLRKYHKKNI--TEIINLSINETLSRTILTVITTLLANLALILFGGEAIRSFSV 272
>sp|A8F0L9|SECF_RICM5 Protein translocase subunit SecF OS=Rickettsia massiliae (strain
Mtu5) GN=secF PE=3 SV=2
Length = 308
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 7 WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFL-- 64
W + G+GIL L+ ILA LGF S+ + FN ST V +G SV+D +
Sbjct: 159 WVRFEWYFGLGIL-IALVHDVILA-LGFMSMTKLDFNLSTIAAV-LTIIGYSVNDSVVIY 215
Query: 65 --ITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNL 121
I + KY KN +E + + +T IL+ + +A + L A+R F++
Sbjct: 216 DRIRENLRKYHKKNI--TEIINLSINETLSRTILTVITTLLANLALILFGGEAIRSFSV 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.144 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,832,865
Number of Sequences: 539616
Number of extensions: 1572766
Number of successful extensions: 4811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 4727
Number of HSP's gapped (non-prelim): 80
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)