Query psy8504
Match_columns 150
No_of_seqs 115 out of 1079
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:38:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12349 Sterol-sensing: Stero 100.0 2.8E-36 6E-41 220.3 13.4 141 9-150 1-141 (153)
2 PF02460 Patched: Patched fami 100.0 4.2E-34 9.1E-39 253.3 15.8 141 8-150 243-383 (798)
3 TIGR00918 2A060602 The Eukaryo 100.0 2.4E-34 5.1E-39 259.7 12.1 147 3-150 416-562 (1145)
4 KOG1934|consensus 100.0 5E-33 1.1E-37 245.8 9.5 146 3-150 272-417 (868)
5 TIGR00917 2A060601 Niemann-Pic 100.0 1.7E-31 3.6E-36 243.9 13.3 143 8-150 599-751 (1204)
6 TIGR00920 2A060605 3-hydroxy-3 100.0 5.2E-31 1.1E-35 229.7 12.0 144 4-149 80-223 (886)
7 KOG1935|consensus 99.9 3.9E-28 8.5E-33 209.6 8.8 144 3-150 429-573 (1143)
8 COG1033 Predicted exporters of 99.9 1.2E-23 2.6E-28 183.4 12.7 135 13-148 219-353 (727)
9 TIGR00921 2A067 The (Largely A 99.9 7.6E-22 1.6E-26 173.1 13.8 134 10-145 214-347 (719)
10 PF03176 MMPL: MMPL family; I 99.9 2.1E-21 4.5E-26 156.6 12.1 135 14-148 167-305 (333)
11 COG1033 Predicted exporters of 99.9 3.3E-21 7.1E-26 168.2 13.9 135 13-149 591-725 (727)
12 KOG1933|consensus 99.8 1.2E-21 2.7E-26 176.4 -1.8 145 6-150 574-719 (1201)
13 TIGR00921 2A067 The (Largely A 99.8 6.2E-19 1.4E-23 154.7 13.5 129 14-144 591-719 (719)
14 TIGR00833 actII Transport prot 99.8 5.6E-18 1.2E-22 152.6 13.7 133 16-148 199-335 (910)
15 TIGR03480 HpnN hopanoid biosyn 99.8 9.7E-18 2.1E-22 150.3 13.5 129 16-145 295-423 (862)
16 TIGR03480 HpnN hopanoid biosyn 99.7 1.4E-16 3.1E-21 142.8 11.6 121 14-142 736-856 (862)
17 TIGR00916 2A0604s01 protein-ex 99.7 1.1E-15 2.4E-20 115.4 13.7 119 15-134 71-191 (192)
18 PRK13022 secF preprotein trans 99.7 3.2E-15 7E-20 119.3 16.0 136 14-150 150-287 (289)
19 TIGR00833 actII Transport prot 99.6 3.2E-15 6.8E-20 134.9 13.4 132 15-148 769-906 (910)
20 PRK13024 bifunctional preprote 99.5 2.5E-13 5.5E-18 120.3 15.4 132 16-148 290-421 (755)
21 TIGR00918 2A060602 The Eukaryo 99.5 5.7E-13 1.2E-17 121.7 14.4 133 13-149 988-1121(1145)
22 PRK10614 multidrug efflux syst 99.5 1.9E-12 4.1E-17 118.3 15.8 129 16-145 358-489 (1025)
23 PRK05812 secD preprotein trans 99.4 3.4E-12 7.5E-17 108.4 14.7 129 16-145 357-485 (498)
24 PRK09579 multidrug efflux prot 99.4 2.5E-12 5.4E-17 117.3 14.7 130 16-146 357-489 (1017)
25 PRK13023 bifunctional preprote 99.4 6.2E-12 1.3E-16 111.1 15.6 131 16-147 302-432 (758)
26 TIGR00966 3a0501s07 protein-ex 99.4 1.5E-11 3.3E-16 96.1 15.0 122 14-136 121-244 (246)
27 TIGR01129 secD protein-export 99.4 1.2E-11 2.5E-16 102.8 14.2 125 16-141 272-396 (397)
28 PRK08578 preprotein translocas 99.4 2.4E-11 5.1E-16 97.3 14.7 128 14-149 158-289 (292)
29 PRK10555 aminoglycoside/multid 99.4 2.2E-11 4.8E-16 111.4 16.3 128 17-145 365-496 (1037)
30 PRK14726 bifunctional preprote 99.4 2.6E-11 5.7E-16 108.3 16.0 129 16-145 396-524 (855)
31 PRK10503 multidrug efflux syst 99.4 1.8E-11 4E-16 112.0 15.2 129 16-145 367-498 (1040)
32 PRK13024 bifunctional preprote 99.3 5.5E-11 1.2E-15 105.6 15.6 135 13-148 599-736 (755)
33 TIGR00915 2A0602 The (Largely 99.3 6.5E-11 1.4E-15 108.5 16.1 128 17-145 365-496 (1044)
34 PRK15127 multidrug efflux syst 99.3 6.7E-11 1.5E-15 108.4 16.1 128 17-145 365-496 (1049)
35 PRK09577 multidrug efflux prot 99.3 5.8E-11 1.3E-15 108.6 15.3 129 17-146 364-496 (1032)
36 PF02460 Patched: Patched fami 99.3 5.1E-11 1.1E-15 106.4 12.1 128 15-145 670-797 (798)
37 PF02355 SecD_SecF: Protein ex 99.3 1.7E-10 3.7E-15 87.0 12.9 132 15-147 55-188 (189)
38 PRK12933 secD preprotein trans 99.3 2.6E-10 5.6E-15 98.3 15.2 129 16-145 464-593 (604)
39 PRK12911 bifunctional preprote 99.2 2.2E-10 4.8E-15 104.7 14.5 130 17-147 934-1063(1403)
40 PRK13021 secF preprotein trans 99.2 7.8E-10 1.7E-14 88.7 15.6 130 14-144 149-280 (297)
41 TIGR00914 2A0601 heavy metal e 99.2 4.3E-11 9.4E-16 109.6 8.8 132 17-149 905-1039(1051)
42 PRK14726 bifunctional preprote 99.2 1.2E-09 2.6E-14 97.8 16.3 135 13-148 694-830 (855)
43 COG2409 Predicted drug exporte 99.1 2.6E-10 5.6E-15 103.5 10.1 136 14-149 208-347 (937)
44 TIGR00915 2A0602 The (Largely 99.1 2.5E-09 5.4E-14 98.1 14.3 132 17-149 897-1031(1044)
45 TIGR00914 2A0601 heavy metal e 99.1 3.9E-09 8.5E-14 96.9 15.3 127 16-145 367-506 (1051)
46 PRK15127 multidrug efflux syst 99.1 3.3E-09 7.2E-14 97.4 13.6 131 17-148 898-1032(1049)
47 PF00873 ACR_tran: AcrB/AcrD/A 99.0 1.5E-09 3.2E-14 99.4 11.1 132 16-148 357-492 (1021)
48 PRK10555 aminoglycoside/multid 99.0 1.2E-08 2.7E-13 93.6 14.9 132 17-149 896-1030(1037)
49 PRK10503 multidrug efflux syst 99.0 1.4E-08 2.9E-13 93.3 13.6 128 17-145 891-1022(1040)
50 PRK09579 multidrug efflux prot 98.9 1.1E-08 2.3E-13 93.8 12.2 133 17-150 871-1007(1017)
51 COG0341 SecF Preprotein transl 98.9 1E-07 2.2E-12 76.7 15.0 138 11-149 154-293 (305)
52 TIGR00917 2A060601 Niemann-Pic 98.9 3.7E-08 8E-13 91.5 13.5 128 15-145 1074-1203(1204)
53 COG0841 AcrB Cation/multidrug 98.9 2E-08 4.3E-13 91.7 10.8 130 17-148 356-488 (1009)
54 PRK09577 multidrug efflux prot 98.9 5.7E-08 1.2E-12 89.2 13.7 128 17-145 892-1022(1032)
55 KOG3664|consensus 98.8 1.9E-09 4.2E-14 96.3 2.3 137 12-148 347-502 (999)
56 PRK10614 multidrug efflux syst 98.8 1.5E-07 3.2E-12 86.5 13.2 130 17-147 877-1010(1025)
57 PRK08343 secD preprotein trans 98.7 5.8E-07 1.3E-11 75.3 14.3 114 25-141 296-409 (417)
58 PRK13023 bifunctional preprote 98.7 7.6E-07 1.6E-11 79.2 15.4 132 13-145 600-733 (758)
59 COG4258 Predicted exporter [Ge 98.7 9.9E-08 2.1E-12 81.9 8.8 111 17-140 672-782 (788)
60 COG0342 SecD Preprotein transl 98.7 8.2E-07 1.8E-11 75.9 14.0 133 15-148 366-498 (506)
61 KOG1934|consensus 98.7 2.1E-07 4.6E-12 83.7 10.9 116 30-147 717-832 (868)
62 PF00873 ACR_tran: AcrB/AcrD/A 98.7 3E-07 6.5E-12 84.4 11.8 127 18-145 890-1020(1021)
63 PRK12911 bifunctional preprote 98.5 3.1E-06 6.8E-11 78.2 15.2 137 13-150 1256-1399(1403)
64 COG4258 Predicted exporter [Ge 98.4 6.5E-06 1.4E-10 71.0 11.4 118 18-142 284-402 (788)
65 COG0841 AcrB Cation/multidrug 97.9 3.3E-05 7.1E-10 71.1 7.6 130 17-147 876-1008(1009)
66 COG2409 Predicted drug exporte 97.9 0.00014 3E-09 66.6 10.5 125 17-143 784-913 (937)
67 KOG1935|consensus 97.8 0.00026 5.7E-09 63.3 10.5 134 13-150 941-1075(1143)
68 COG3696 Putative silver efflux 96.9 0.0099 2.2E-07 54.0 10.2 130 17-147 361-497 (1027)
69 COG3696 Putative silver efflux 96.5 0.0097 2.1E-07 54.1 7.3 131 17-148 888-1021(1027)
70 KOG1933|consensus 66.6 0.33 7.3E-06 45.8 -4.8 117 26-146 1056-1175(1201)
71 TIGR02230 ATPase_gene1 F0F1-AT 62.4 21 0.00045 24.2 4.5 44 16-59 42-87 (100)
72 PF09946 DUF2178: Predicted me 42.5 1.1E+02 0.0024 20.9 7.8 19 112-130 89-107 (111)
73 PF12676 DUF3796: Protein of u 37.7 1.4E+02 0.003 20.7 7.7 44 100-149 69-112 (118)
74 PF10942 DUF2619: Protein of u 36.0 74 0.0016 20.1 3.6 46 78-126 20-67 (69)
75 TIGR02908 CoxD_Bacillus cytoch 31.5 1.8E+02 0.0038 20.1 7.2 54 84-138 22-75 (110)
76 TIGR00383 corA magnesium Mg(2+ 29.5 2.9E+02 0.0062 21.9 7.3 49 81-129 252-302 (318)
77 PF04632 FUSC: Fusaric acid re 28.2 1.8E+02 0.0039 25.5 6.0 38 104-141 377-414 (650)
78 PRK13453 F0F1 ATP synthase sub 27.1 1.4E+02 0.003 21.8 4.4 44 105-149 8-51 (173)
79 PF14402 7TM_transglut: 7 tran 25.5 2.2E+02 0.0047 23.4 5.5 63 18-89 194-257 (313)
80 PRK10631 p-hydroxybenzoic acid 24.1 3.2E+02 0.007 24.7 6.8 40 102-141 388-427 (652)
81 PF14362 DUF4407: Domain of un 22.2 4E+02 0.0086 21.0 6.8 34 11-44 10-43 (301)
82 PF03649 UPF0014: Uncharacteri 21.5 4.1E+02 0.0088 20.9 11.2 85 32-118 110-220 (250)
83 PF06550 DUF1119: Protein of u 21.0 3.7E+02 0.008 21.7 5.9 22 25-46 117-138 (283)
84 PF14184 YrvL: Regulatory prot 20.6 3.2E+02 0.0069 19.3 5.1 36 26-62 20-55 (132)
No 1
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=100.00 E-value=2.8e-36 Score=220.33 Aligned_cols=141 Identities=38% Similarity=0.679 Sum_probs=136.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHH
Q psy8504 9 PVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLR 88 (150)
Q Consensus 9 ~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~ 88 (150)
|||||+|+++.+++++..|+.+++|++.++|.++++...+++||+++++|+||++++.++|++.+++. +.++|++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~-~~~~ri~~al~ 79 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSL-PVPERIAEALS 79 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-cHHHHHHHHHH
Confidence 68999999999999999999999999999999999987779999999999999999999999988777 77999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 89 KTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 89 ~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
+.|++++.|++++..+|..++++++|++|+||+++++++++||++++|+|||+|++|.||.|
T Consensus 80 ~~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~ 141 (153)
T PF12349_consen 80 RVGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLL 141 (153)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 2
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=4.2e-34 Score=253.34 Aligned_cols=141 Identities=33% Similarity=0.593 Sum_probs=136.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHH
Q psy8504 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVL 87 (150)
Q Consensus 8 ~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l 87 (150)
++++||+++|+.|++++++|+.+++|++.++|++++++ ..+.||+++|||+||+|+++++|+++.++. +.+||+++++
T Consensus 243 ~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~i-~~v~PFLvlgIGvDd~Fi~~~~~~~~~~~~-~~~er~~~~l 320 (798)
T PF02460_consen 243 DWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNPI-VLVIPFLVLGIGVDDMFIMIHAWRRTSPDL-SVEERMAETL 320 (798)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhh-HHHHHHHHHHHHHhceEEeHHHHhhhchhc-cHHHHHHHHH
Confidence 56999999999999999999999999999999999997 579999999999999999999999988876 8999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 88 RKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 88 ~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
+++||++++||+|++++|++++++++|++|.||++++++++++|++++|+|||++++|.|||+
T Consensus 321 ~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~a~l~l~~~re~ 383 (798)
T PF02460_consen 321 AEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFPAILVLDGRREA 383 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=2.4e-34 Score=259.75 Aligned_cols=147 Identities=52% Similarity=0.881 Sum_probs=141.3
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHH
Q psy8504 3 LIKYWDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSEC 82 (150)
Q Consensus 3 ~~~~~~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~ 82 (150)
++.++|+++||+++|++|++++++|+.+++|++.++|+++|.++..++|||++|+|+||+|+++++|+++.++. +.+||
T Consensus 416 ~l~~~d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~-~v~~r 494 (1145)
T TIGR00918 416 TMLRWDCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNI-PFEER 494 (1145)
T ss_pred HhccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccC-CHHHH
Confidence 46778999999999999999999999999999999999999987789999999999999999999999877655 89999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 83 TGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 83 i~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
++++++++|+++++|++|++++|++++++++|++|.||++++++++++|++|+|+|||+|++|.||+|
T Consensus 495 ~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~ 562 (1145)
T TIGR00918 495 TGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRRE 562 (1145)
T ss_pred HHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 4
>KOG1934|consensus
Probab=99.98 E-value=5e-33 Score=245.80 Aligned_cols=146 Identities=29% Similarity=0.470 Sum_probs=140.8
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHH
Q psy8504 3 LIKYWDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSEC 82 (150)
Q Consensus 3 ~~~~~~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~ 82 (150)
+..+.|+++||+++|++|++++.+|.+.++|++.|+|++++++. .+.|||++|||+||+|+++++|+++.++. +.+||
T Consensus 272 t~~~~~~v~SKp~lai~g~l~p~mA~~ta~G~l~~~G~~f~sI~-~v~PFLvl~IGVDD~Flml~aW~rt~~~~-~~~~R 349 (868)
T KOG1934|consen 272 TSFMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCGFPFNSIV-CVMPFLVLGIGVDDAFLMLAAWRRTSKKL-SVEER 349 (868)
T ss_pred hhcchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCCccee-eecchheeeecccHHHHHHHHHHhcCccC-CHHHH
Confidence 34677999999999999999999999999999999999999975 69999999999999999999999998888 89999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 83 TGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 83 i~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
++++++++||++++||+|++++|+.|.+++.|++|.||.+++++++++|++|+|||.|++++.+|||+
T Consensus 350 m~~~laeag~SItITSlTn~lsFgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~ 417 (868)
T KOG1934|consen 350 MAETLAEAGPSITITSLTNVLSFGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREA 417 (868)
T ss_pred HHHHHHHhcCeeeHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 5
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.97 E-value=1.7e-31 Score=243.89 Aligned_cols=143 Identities=26% Similarity=0.509 Sum_probs=134.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC-CC---------
Q psy8504 8 DPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK-NQ--------- 77 (150)
Q Consensus 8 ~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~-~~--------- 77 (150)
+++|||+++|+.|++++++|+.+++|+++|+|+++++++..++||+++|+|+||+|++++.|++..++ ++
T Consensus 599 ~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~ 678 (1204)
T TIGR00917 599 LFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQEL 678 (1204)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccC
Confidence 57999999999999999999999999999999999987678999999999999999999999875432 22
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 78 FDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 78 ~~~~~i~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
+.+||++++++++|+++++|++|++++|++++++++|++|+||++++++++++|++++|+|||+|++|.||+|
T Consensus 679 ~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~ 751 (1204)
T TIGR00917 679 TLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTE 751 (1204)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999975
No 6
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.97 E-value=5.2e-31 Score=229.75 Aligned_cols=144 Identities=20% Similarity=0.240 Sum_probs=133.2
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHH
Q psy8504 4 IKYWDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECT 83 (150)
Q Consensus 4 ~~~~~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i 83 (150)
+.+.+.++||++||++|++++++|++++.|++.++|.+++.+ ..++||+++++|+||+|.+ ..|+......++.++|+
T Consensus 80 l~~l~~v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaIGVDnifiL-a~~~~~t~~~~~v~eRI 157 (886)
T TIGR00920 80 FCNLRQLGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLIDLSKASAL-AKFALSSNSQDEVRDNI 157 (886)
T ss_pred hCCccccCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhhchhhHHHH-HhhhhccCCCCCHHHHH
Confidence 345677999999999999999999999999999999999998 7999999999999999999 44552333455999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 84 GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 84 ~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
++++++.||++++++++++++|++++++++|++|.||.|++++++++|++|+|||||+|+++.+|+
T Consensus 158 a~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~~le 223 (886)
T TIGR00920 158 ARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVLELS 223 (886)
T ss_pred HHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 7
>KOG1935|consensus
Probab=99.95 E-value=3.9e-28 Score=209.56 Aligned_cols=144 Identities=51% Similarity=0.879 Sum_probs=138.2
Q ss_pred cccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHH
Q psy8504 3 LIKY-WDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSE 81 (150)
Q Consensus 3 ~~~~-~~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~ 81 (150)
|..| ||+++|+..+|++|++.+.+|..+++|++.++|+.||.-|.+++||+.+|+|+||+|.+.++|++..+. +|
T Consensus 429 t~lr~~~~~~sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~----~~ 504 (1143)
T KOG1935|consen 429 TQLRWWDAVQSQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL----HE 504 (1143)
T ss_pred HHHHhhhhhccccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh----HH
Confidence 4567 799999999999999999999999999999999999999999999999999999999999999986643 89
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 82 CTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 82 ~i~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
++++.++++|+++.+||+.++.+|+.+++-|+|++|.||..+++.+.++|+..++.|||++++|.||++
T Consensus 505 ~~~~~lk~tG~Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~ 573 (1143)
T KOG1935|consen 505 EMGELLKETGMSVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRK 573 (1143)
T ss_pred HHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999975
No 8
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=183.44 Aligned_cols=135 Identities=24% Similarity=0.405 Sum_probs=126.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGL 92 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~ 92 (150)
++.-++.+++++++|+.|++|+|+|+|+|++..+ ...|.+++|+|+||++|+.|+|.++++++++++|++.+++++.|+
T Consensus 219 ~~~~~llpL~~~l~sv~~tlG~m~llG~plt~~s-~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~ 297 (727)
T COG1033 219 SVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITT-SAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGP 297 (727)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCchhHH-HHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Confidence 4445799999999999999999999999999975 688889999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 93 SIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
|++.+.+||++||.+..++.+|++++||+.+.+|++.+|+..+++.|+.+.+..++
T Consensus 298 avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~sl~~lp~ll~~~~~~ 353 (727)
T COG1033 298 AVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVLPALLILIPKG 353 (727)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHh
Confidence 99999999999999999999999999999999999999999999999988876554
No 9
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.88 E-value=7.6e-22 Score=173.05 Aligned_cols=134 Identities=22% Similarity=0.327 Sum_probs=124.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHH
Q psy8504 10 VKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRK 89 (150)
Q Consensus 10 v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~ 89 (150)
.|| +..++.+++++.+++.+++|+++++|.+++..+ ...|.+++|+|+||++|++++|+++.+++.+.+|++.+++++
T Consensus 214 ~rs-~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~-~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~ 291 (719)
T TIGR00921 214 FKR-WWRPLLPLVIILFGVAWVLGIMGWLGIPLYATT-LLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRR 291 (719)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 344 345788899999999999999999999999975 588888999999999999999999887777999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 90 TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 90 ~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.|++++.+++|+++||+++.+++.|++|+||+++++|++++++.+++++|+++.+.
T Consensus 292 ~g~~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv~~~~l~~l~~lPall~~~ 347 (719)
T TIGR00921 292 TGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSI 347 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999864
No 10
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.86 E-value=2.1e-21 Score=156.63 Aligned_cols=135 Identities=30% Similarity=0.422 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----HHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHH
Q psy8504 14 AGVGILGCCLISFSILAGLGF----CSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRK 89 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~----~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~ 89 (150)
+..++.+++++.+++.+++|+ +...|.+++..+..+...+.+|+|+||.+|++++|+++.+++.+.+|++.+++++
T Consensus 167 ~~~~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~ 246 (333)
T PF03176_consen 167 VRAALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRS 246 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhc
Confidence 455888999999999999999 4467788887654455568899999999999999999988777999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 90 TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 90 ~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
+|++++.+++|+++||+++.++++|++|+||+.+++|++++++..++++|+++.+-+||
T Consensus 247 ~g~~i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~ 305 (333)
T PF03176_consen 247 TGRAILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRW 305 (333)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999987776
No 11
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.86 E-value=3.3e-21 Score=168.24 Aligned_cols=135 Identities=24% Similarity=0.400 Sum_probs=126.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGL 92 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~ 92 (150)
++.-++++++++..++.|++|+|+++|+++++.+ ..+--+++|+|+||++|++++|+++++++. ++|++.++++++|+
T Consensus 591 s~~~~i~~iipi~~~v~~~~~~M~l~gI~~~~~t-a~v~ai~lGiGvDYsIh~~ery~eer~~~~-~~eAi~~t~~~~G~ 668 (727)
T COG1033 591 SPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTPAT-ATLGAIILGIGVDYSIHITERYREERKKGG-PKEAIETTVERTGK 668 (727)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHhCCchhHHH-HHHHHHhhhccchhhhHHHHHHHHHHhcCC-chHHHHHHHHhhch
Confidence 4455899999999999999999999999999976 577778999999999999999999998886 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 93 SIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
+++.+++|++.||+++.+|+.|.+++||+.++++++++.+.+++++||++.+..+|.
T Consensus 669 ail~s~ltt~~GF~aLi~S~f~i~snfGll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 669 AILASALTTAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999877665
No 12
>KOG1933|consensus
Probab=99.81 E-value=1.2e-21 Score=176.43 Aligned_cols=145 Identities=28% Similarity=0.543 Sum_probs=138.3
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCC-CCHHHHHH
Q psy8504 6 YWDPVKSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKN-QFDSECTG 84 (150)
Q Consensus 6 ~~~~v~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~-~~~~~~i~ 84 (150)
|...++||..+++.|+..+..++..++|+.+++|++-+.+...++||+++++|+|+.++++++|++..++. .+.++++.
T Consensus 574 r~vlidSkv~lgi~Gv~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~ 653 (1201)
T KOG1933|consen 574 RRVLIDSKVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIG 653 (1201)
T ss_pred ceeeeeceeeccccceEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccc
Confidence 45678999999999999999999999999999999999988899999999999999999999999877653 58899999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 85 IVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 85 ~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
.++.++||+++.+++.+..+|+.++++++|++|.|++++++++++++++|++.+.+.+++|.||+|
T Consensus 654 ~~l~~~~Psil~~slse~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~~ 719 (1201)
T KOG1933|consen 654 SVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRRL 719 (1201)
T ss_pred hhhhccCcHHHHhHHHhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 13
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.80 E-value=6.2e-19 Score=154.70 Aligned_cols=129 Identities=23% Similarity=0.337 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLS 93 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~ 93 (150)
+..++.+++++.+++.+++|+|+++|++++..+ .+...+++|+|+||++|++++|+++.++ .+.+|++.++++++|++
T Consensus 591 ~~~~l~~~i~~~~~~~~~~g~~~~~gi~l~~~~-~~~~~i~lGigvDy~i~~~~r~~~~~~~-~~~~~ai~~a~~~~g~a 668 (719)
T TIGR00921 591 PIKAVFPLIAIGSGILWAIGLMGLRGIPSFLAM-ATTISIILGLGMDYSIHLAERYFEERKE-HGPKEAITHTMERTGPG 668 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHhHH
Confidence 455888899999999999999999999999965 5777789999999999999999998876 48999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8504 94 IILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSL 144 (150)
Q Consensus 94 i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l 144 (150)
++.+++|+++||+++.+++.|.+|+||..++++++++++..++++|+++.+
T Consensus 669 i~~s~lt~~~gf~~l~~s~~~~~~~~g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 669 ILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999864
No 14
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.77 E-value=5.6e-18 Score=152.56 Aligned_cols=133 Identities=26% Similarity=0.415 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcc----cchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHh
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFN----ASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTG 91 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~----~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g 91 (150)
..+.+++.+.+++.+++|++.++|.+.+ ..+...++.+++|+|+||.+|++++|+++.+++.+++|++.++++++|
T Consensus 199 ~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g 278 (910)
T TIGR00833 199 TMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTG 278 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3667788888999999999999998643 333334456789999999999999999998877799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 92 LSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 92 ~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
++++.+++|++++|+.+.+++.|.+|+||+.++++++++++..++++|+++.+.+||
T Consensus 279 ~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gvl~a~l~~ltllPall~l~g~~ 335 (910)
T TIGR00833 279 KAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGRE 335 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999987665
No 15
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.76 E-value=9.7e-18 Score=150.26 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
..+..++++.+++.+++|++.++|.++|.++ .+.+.+++|+|+||++|++++|+++.+++.+.++++.+++++.+++++
T Consensus 295 ~~l~~l~~i~~s~~~~~~~~~l~~~~ln~~s-~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~ 373 (862)
T TIGR03480 295 LVFAVLVTLIVGLILTAAFATLAVGHLNLIS-VAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALL 373 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999975 578889999999999999999999887777899999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++||++||++...+++|.+++||++++.|++++++..++++|+++.+.
T Consensus 374 ~s~lTt~~gf~~l~~~~~~~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~ 423 (862)
T TIGR03480 374 LAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLL 423 (862)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999874
No 16
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.69 E-value=1.4e-16 Score=142.80 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLS 93 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~ 93 (150)
+..++..++++.+++.+++|+|.++|+++|..+. +...+++|+|+||++|++++|+++++++ +.. .+++|++
T Consensus 736 ~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~-~~~~l~lGigVDy~I~~~~r~~~~~~~~-~~~------~~~~g~a 807 (862)
T TIGR03480 736 VRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANI-IALPLLLGLGVDFGIYMVHRWRNGVDSG-NLL------QSSTARA 807 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHhhhhhhHHHHHHHHHHhccch-hHH------HhhhHHH
Confidence 3457888999999999999999999999999764 5556789999999999999998875322 111 1467999
Q ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 94 IILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIV 142 (150)
Q Consensus 94 i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L 142 (150)
++++++|+++||++..+++.|.+++||+.+++|++++++..++++|+++
T Consensus 808 i~~saltt~~gf~~l~~s~~~~~~~~G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 808 VFFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999987
No 17
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.68 E-value=1.1e-15 Score=115.43 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc--CCCCHHHHHHHHHHHHhH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS--KNQFDSECTGIVLRKTGL 92 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~--~~~~~~~~i~~~l~~~g~ 92 (150)
..++..++.+..++.+++|+|+++|+++|..+ ...+.+++|+++||.+|+.++++++.+ ++.+.++++.++.++.++
T Consensus 71 ~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s-~~glil~iGi~Vd~aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~ 149 (192)
T TIGR00916 71 RGAIAAIAALVHDVILILGVLSLFGATLTLPG-IAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLS 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccHHH-HHHHHHHHHHhhcCeEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 34566677778889999999999999999975 578888999999999999999998765 566999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH
Q psy8504 93 SIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVL 134 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~ 134 (150)
++..|++|++++|....+.+.|.+|.|++....+++.+++.+
T Consensus 150 ~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 150 RIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988754
No 18
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.67 E-value=3.2e-15 Score=119.31 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC--CCCHHHHHHHHHHHHh
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK--NQFDSECTGIVLRKTG 91 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~--~~~~~~~i~~~l~~~g 91 (150)
+..++..++++..+++.++|++.++|+++|... ...+..++|+++||.+++.++++++.++ +.+.+|++.++..+..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~s-iaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~ 228 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTV-IAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTL 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHH-HHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 456888899999999999999999999999964 5777788999999999999999987644 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 92 LSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 92 ~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
.+++.|++||.+++....+.+.+.++.|++....|++.++..++++.|+++.+-.+|++
T Consensus 229 ~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~Gli~~~~~sl~i~p~l~~~~~~~~~ 287 (289)
T PRK13022 229 SRTIITSLTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLLWLGVRRE 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999998766653
No 19
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.64 E-value=3.2e-15 Score=134.86 Aligned_cols=132 Identities=19% Similarity=0.154 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC-----cccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIP-----FNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRK 89 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~-----~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~ 89 (150)
...+..++.+.+++.+++|++.|++.+ ++.......+.+++|+|+||.+|+++||+++.+++ .+|++.+++++
T Consensus 769 ~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g--~~~av~~a~~~ 846 (910)
T TIGR00833 769 VAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPAG--NRTGIIRALGS 846 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcC--ccHHHHHHHHH
Confidence 347778889999999999999876544 33322235567889999999999999999998554 47889999999
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccc
Q psy8504 90 TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFN-MFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 90 ~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~-~~~~~t~~pa~L~l~~rR 148 (150)
+|++++.+++|++++|+++.++++|.+++||...++|++++ ++..+++.||++.+.+||
T Consensus 847 tg~~I~~a~~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 847 TGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999995 666788999999998886
No 20
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.53 E-value=2.5e-13 Score=120.34 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++...+.+...+..++|++.++|.++|... ...+.+++|+++||.+++.++++++.+++.+.++++.++.++...+++
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l~s-iaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il 368 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTLPG-IAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTIL 368 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5788888899999999999999999999974 467778899999999999999999887777999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 96 LSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
.|++||++++..+.+.+.+++|.|++...+|++++++.++++.|+++.+..+|
T Consensus 369 ~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l~~~~~~~ 421 (755)
T PRK13024 369 DSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKR 421 (755)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999888888999999999999999999999999999876544
No 21
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.49 E-value=5.7e-13 Score=121.75 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=117.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGL 92 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~ 92 (150)
.++-++..++++++..+..+|+|++.|+++|++. .+.-.+.+|+|+|++.|+.++|... .+ +++||++++++++|.
T Consensus 988 ~~~~a~iv~l~v~~i~v~v~G~M~lwgI~LnaVS-~vnLimsIGisVefsaHI~~~F~~~--~~-~r~eR~~~AL~~~G~ 1063 (1145)
T TIGR00918 988 NPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIP-VVILIASVGIGVEFTVHIALGFLTA--IG-DRNRRAVLALEHMFA 1063 (1145)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH-HHHHHHHHhhhhhhhHHHHHHHHhc--CC-CHHHHHHHHHHHhhH
Confidence 3444666677888899999999999999999863 5666778999999999999999853 23 679999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 93 SIILSSVCKSVAFFSASLIPIP-ALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~~p-~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
|++.+++||.+|..++++++.. ..+.|+....+.|++.++..+.++|.+|++-+-+.
T Consensus 1064 pVl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp~~ 1121 (1145)
T TIGR00918 1064 PVLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGPEP 1121 (1145)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999987 77999999999999999999999999999876543
No 22
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.46 E-value=1.9e-12 Score=118.26 Aligned_cols=129 Identities=16% Similarity=0.262 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++...+++.+++..+++++.++|+++|.++ ...+.+.+|+.+||++++.+++++..+++.++.+++.++.++.+.+++
T Consensus 358 ~~li~~~~ip~s~~~~~~~l~~~g~~ln~~s-l~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~ 436 (1025)
T PRK10614 358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNNLS-LMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVL 436 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHH-HHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3566667888999999999999999999975 466667889999999999998888777777899999999999999999
Q ss_pred HHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~---p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++|++++|....+.+- +.++.|++..+.+++++++.++++.|++.+..
T Consensus 437 ~stltti~~f~Pl~~~~g~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~ 489 (1025)
T PRK10614 437 SMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWL 489 (1025)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887765 56999999999999999999999999998764
No 23
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.44 E-value=3.4e-12 Score=108.44 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++.+.+.+.++++.++|++.++|.++|... ...-.+.+|.++||.+++.++++++.+++.+.++++.++.++...+++
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l~l~s-iaGlil~iG~~VD~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il 435 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATLTLPG-IAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTIL 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchHHH-HHHHHHhheeEEeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5888889999999999999999999999964 455667889999999999999998887777999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++|+.+++..+.+....+++.|++...+|++++++.++++.|+++.+-
T Consensus 436 ~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l~~~~ 485 (498)
T PRK05812 436 DSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLL 485 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766678999999999999999999999999999843
No 24
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.44 E-value=2.5e-12 Score=117.34 Aligned_cols=130 Identities=18% Similarity=0.291 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++...+++.++++++++.+.++|+++|.++ .....+.+|+.+||++++++++++..+++.++++++.++.++.++|++
T Consensus 357 ~~l~~~~~IP~s~~~~~~~l~~~G~~ln~~s-l~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil 435 (1017)
T PRK09579 357 SVLIPVVTIPLSMIGVLFFMQMMGYSINLLT-LLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVV 435 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHH-HHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455667888999999999999999999975 355667788999999999999988777777999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDL 146 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~ 146 (150)
.+++||+++|....+.+ -+..+.|++....+++++++.++++.|++.+.-.
T Consensus 436 ~stlTti~~f~Pl~f~~g~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~ 489 (1017)
T PRK09579 436 SMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLL 489 (1017)
T ss_pred HHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999887643 2668999999999999999999999999987643
No 25
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.42 E-value=6.2e-12 Score=111.09 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.|+...+.....+..++|++.++|.++|... ...-.+.+|+++||.+++.++++++.+++.+.++++.++.++...+++
T Consensus 302 ~glia~iaL~~~v~~tl~~l~l~g~~Lnl~s-iaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il 380 (758)
T PRK13023 302 LGVIALVALVVNIIILTAVLSLIGASISLAS-IAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIV 380 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5778888889999999999999999999964 455567899999999999999998877667999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 96 LSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
.+++|+.++|..+.+...+++|.|++...+|++.+++..+++-|+++.+-.|
T Consensus 381 ~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~~~~~~ 432 (758)
T PRK13023 381 DANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVR 432 (758)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888889999999999999999999999999999876533
No 26
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.40 E-value=1.5e-11 Score=96.14 Aligned_cols=122 Identities=14% Similarity=0.227 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc--CCCCHHHHHHHHHHHHh
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS--KNQFDSECTGIVLRKTG 91 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~--~~~~~~~~i~~~l~~~g 91 (150)
+..++..++.+..+++.+++.+.++|+++|... .....+++|+.+||.+++.++++++.+ ++.+.+|++.++.++..
T Consensus 121 ~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~s-l~gli~~iGi~Vdd~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~ 199 (246)
T TIGR00966 121 WRFALGAIVALVHDVIITVGVYSLFGIEVNLTT-VAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTL 199 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHH-HHHHHHHHHHhccCeEEEehHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 446788888999999999999999999999964 577778899999999999999987633 24589999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 92 LSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLL 136 (150)
Q Consensus 92 ~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t 136 (150)
++++.|++|+.++|....+.+-+.+|.|++....|+++....++.
T Consensus 200 ~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 200 SRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999988876654
No 27
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.39 E-value=1.2e-11 Score=102.79 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++...+.+...+..++|++.++|.++|... ...-.+.+|.++||.+++.++++++.+++.+.++++.++.++...+++
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l~s-iaglil~iG~~VD~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~ 350 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTLPG-IAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIF 350 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHhheeeeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5778888899999999999999999999964 456667889999999999999998877666899999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 96 LSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 141 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~ 141 (150)
.+++|+++++....+...+.+|.|++...+|++++++.++++-+.+
T Consensus 351 ~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~~ 396 (397)
T TIGR01129 351 DANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396 (397)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988876677899999999999999999999987765
No 28
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.37 E-value=2.4e-11 Score=97.25 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLS 93 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~ 93 (150)
++.++...+++...+..++|++.++|+++|..+. ..-..++|.++||++++.+++++.. + +.+|++.+++++.
T Consensus 158 ~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i-~gll~iiG~sVdd~IVv~dri~~~~--~-~~~eai~~a~~~~--- 230 (292)
T PRK08578 158 PVPSLAVILSAFSDIIIALALMNLFGIELSLATV-AALLMLIGYSVDSDILLTTRVLKRR--G-TFDESIKRAMRTG--- 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHH-HHHHHHHheeecCcEEEehHHHHcc--C-CHHHHHHHHHHHH---
Confidence 5667888888899999999999999999999754 3333678999999999999997642 3 7889999988553
Q ss_pred HHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 94 IILSSVCKSVAFFSASLI----PIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 94 i~~tslt~~~~f~~~~~s----~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
..+++||.++|....+. +.+.+|.|++....|++++++.++.+-++++.+..+||
T Consensus 231 -i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l~~Gli~s~~~tl~~~~~~l~~~~~~~ 289 (292)
T PRK08578 231 -ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLADLMNTWLLNAGILRWYKTEG 289 (292)
T ss_pred -HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45679999999887643 57999999999999999999999999999999877765
No 29
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.37 E-value=2.2e-11 Score=111.38 Aligned_cols=128 Identities=15% Similarity=0.269 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
++...+.+.+++++++++++++|+++|..+ .+.+.+.+|+.+||++|+++++++.. +++.+++|++.++.++.+++++
T Consensus 365 ~li~~~~iP~si~~t~~~~~~~G~~ln~~s-l~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~ 443 (1037)
T PRK10555 365 TLIPTIAVPVVLMGTFSVLYAFGYSINTLT-MFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALV 443 (1037)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCChhHHH-HHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 566677778899999999999999999975 58888889999999999999998876 4566999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++|++++|.-..+.+ -.-.+.+++....+++++++.++++.|++.+..
T Consensus 444 ~stltti~~flPl~~~~G~~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~ 496 (1037)
T PRK10555 444 GIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATL 496 (1037)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888752 244689999999999999999999999998854
No 30
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.37 E-value=2.6e-11 Score=108.28 Aligned_cols=129 Identities=17% Similarity=0.215 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++...+.+..+++.++|++.++|.++|.... ..-.+.+|..+||.+++.++.+++.+++.+..+++.++.+++..+++
T Consensus 396 ~glia~ial~~~vl~~l~~l~l~g~tLnl~~I-aGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il 474 (855)
T PRK14726 396 LGVIAVIALIVNVVLIIAVLSLLGATLTLPGI-AGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIV 474 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcceeHHHH-HHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999999642 44456788999999999999999888777999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++||+++|..+.+.+-.++|.|++...++++..++.++++.|.++++-
T Consensus 475 ~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~~~ 524 (855)
T PRK14726 475 DANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVW 524 (855)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999999999999999999999999998854
No 31
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.36 E-value=1.8e-11 Score=111.97 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.++...+.+.+++..+++++.++|+++|.++. ....+.+|+.+||++++++++++..+++.++.++..++.++.+.+++
T Consensus 367 ~~~i~~~~ip~s~~~~~~~l~~~g~~ln~~sl-~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl 445 (1040)
T PRK10503 367 ATIIPGVAVPLSLIGTFAVMVFLDFSINNLTL-MALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTII 445 (1040)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHH-HHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46667778889999999999999999999753 56667788889999999999988777766888999999999999999
Q ss_pred HHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~~---p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++|++++|.-..+.+- +.++.|++..+.+++++++.++++.|.+.+..
T Consensus 446 ~~tltti~~f~Pl~~~~g~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~ 498 (1040)
T PRK10503 446 SLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARM 498 (1040)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887765 77899999999999999999999999988753
No 32
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.33 E-value=5.5e-11 Score=105.62 Aligned_cols=135 Identities=15% Similarity=0.221 Sum_probs=118.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc--CCCCHHHHHHHHHHHH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS--KNQFDSECTGIVLRKT 90 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~--~~~~~~~~i~~~l~~~ 90 (150)
++..++.++++.+.-++.++|+++++|+++|+... ..-..++|.++||.+++.+|++|+.+ ++.+.+|.+.+++.++
T Consensus 599 ~~~~~~~aiial~~dvii~~g~~~l~~~~~~~~~i-aall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~t 677 (755)
T PRK13024 599 EWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFI-AAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQT 677 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcHHHH-HHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 56678999999999999999999999999999754 44456889999999999999999764 4458999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccc
Q psy8504 91 GLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVS-LDLRR 148 (150)
Q Consensus 91 g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~-l~~rR 148 (150)
......|++||.+++.++.+...|.+++|++.+.+|+++...-++.+-++++. +..||
T Consensus 678 l~rti~ts~tt~~~~~~L~~~g~~~i~~fa~~l~iGii~g~~ssifia~~l~~~~~~~~ 736 (755)
T PRK13024 678 LSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRR 736 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999888777665 44443
No 33
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.32 E-value=6.5e-11 Score=108.45 Aligned_cols=128 Identities=16% Similarity=0.278 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
++...+++.++++.+++++.++|+++|..+ .....+.+|+.+||++++++++++.. +++.++.|++.++.++.+++++
T Consensus 365 ~li~~~~iP~s~~~~~~~~~~~g~~ln~~s-l~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~ 443 (1044)
T TIGR00915 365 TLIPTIAVPVVLLGTFAVLAAFGFSINTLT-MFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHH-HHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 566666778899999999999999999975 46667888888999999999988764 4455899999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++|++++|.-..+.+ -+..+.|++....+++++++.++++.|++....
T Consensus 444 ~ttltti~~flPl~~~~G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~ 496 (1044)
T TIGR00915 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 496 (1044)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888754 567899999999999999999999999987753
No 34
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.32 E-value=6.7e-11 Score=108.36 Aligned_cols=128 Identities=16% Similarity=0.274 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
++...+.+.++++.+++++.++|.++|..+ .....+.+|+.+||++++++++++.. +++.++++++.++.++.++++.
T Consensus 365 ~li~~~~iP~sl~~~~~~~~~~g~~ln~~s-l~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~ 443 (1049)
T PRK15127 365 TLIPTIAVPVVLLGTFAVLAAFGFSINTLT-MFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 556667778899999999999999999975 46677889999999999999998865 4455899999999999999999
Q ss_pred HHHHHHHHHHHHhccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLI---PIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s---~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
.+++|++++|.-..+. .-+..+.|++....+++++++.++++.|++.+..
T Consensus 444 ~~tltt~~~f~Pl~~~~G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~ 496 (1049)
T PRK15127 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 496 (1049)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998873 3355689999999999999999999999987754
No 35
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.31 E-value=5.8e-11 Score=108.64 Aligned_cols=129 Identities=21% Similarity=0.311 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
++...+++.+++..++++|.++|+++|.++ .....+.+|+.+||++++++++++.. +++.++.+++.++.++.+++++
T Consensus 364 ~liv~~~iP~s~~~~~~~m~~~g~~ln~~s-l~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~ 442 (1032)
T PRK09577 364 TLIPTLVVPVALLGTFGVMLAAGFSINVLT-MFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIV 442 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 566677788999999999999999999975 57777889999999999999998865 4555889999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDL 146 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~ 146 (150)
.+++|++++|.-..+.+ -+..+.|++....+++++++.++++.|++.....
T Consensus 443 ~~tlt~~~~flPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~ 496 (1032)
T PRK09577 443 GITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLL 496 (1032)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998877654 3457999999999999999999999999987643
No 36
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.27 E-value=5.1e-11 Score=106.41 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSI 94 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i 94 (150)
..++...++++.-.+..+|.|.+.|+++|+.. .+.-.+.+|+++|++.|+..+|.+...+ +++||+.+++++.|+|+
T Consensus 670 ~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs-~v~l~~~iG~sVd~~~Hi~~~f~~~~~~--~~~~r~~~al~~~g~pv 746 (798)
T PF02460_consen 670 RSSLIVTLSILSIDVGVIGFMSLWGVDLDPVS-MVNLIMSIGFSVDFSAHIAYAFVHSQGS--TRDERVAEALSSMGWPV 746 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccccCcchHH-HHHHHHHhchhhHHHHHHHHHheecccc--hHHHHHHHHHHHhhHHH
Confidence 33555555556666678899999999999974 5777788899999999999999875544 89999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 95 ILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 95 ~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
+-.+++|.+|...+++++.+..+.|.-...+.+++.++..+.++|++|++-
T Consensus 747 ~~~~~st~l~~~~l~f~~~~~~~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 747 LQGALSTFLGVLPLAFSPSYIFRVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999863
No 37
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.26 E-value=1.7e-10 Score=86.98 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC--CCCHHHHHHHHHHHHhH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK--NQFDSECTGIVLRKTGL 92 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~--~~~~~~~i~~~l~~~g~ 92 (150)
..++.+++.....++.++|++.++|+++|+.. ...-..++|.++||.+++.+|.+|+.++ +.+.++++.+++++.-.
T Consensus 55 ~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~-iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~ 133 (189)
T PF02355_consen 55 RFALAAIIALIHDVLITLGIFSLFGIELTLPS-IAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLS 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHCCcccHHH-HHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 35788888888889999999999999999964 3555688999999999999999998533 55899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 93 SIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
....|++|+.+......+..-+++++|+....+|++.+..-++.+-++++.+-.|
T Consensus 134 r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 134 RTIDTSLTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998888889999999999999999999999998888876544
No 38
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.25 E-value=2.6e-10 Score=98.33 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSIL-GIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSI 94 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~-G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i 94 (150)
.|+...+.+...++.++|+|+++ |.++|... ...-.+.+|..+|+.+++.++.+++.+++.+..+++..+++++..++
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtLpg-IAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~I 542 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTLPG-IAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTI 542 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccHHH-HHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 47778888899999999999998 99999864 34455778999999999999999988777789999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 95 ILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 95 ~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
+.+++||.++|..+.+-.-.++|.|++...+|++..++..+++-|+++.+-
T Consensus 543 ldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l~~~~ 593 (604)
T PRK12933 543 FDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLV 593 (604)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887766677999999999999999999999999998754
No 39
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.24 E-value=2.2e-10 Score=104.65 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
++...+.+...++.+++++.++|.++|... ...-.+.+|.++||.+++.++.+++.+.+.+..+++.++.++...+++.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTLpg-IAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTLSG-LAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHH-HHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 666777777889999999999999999964 3555678899999999999999998877778999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 97 SSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 97 tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
+++||++++..+.+....+++.|++...+|++...+.++++.|+++.+-.+
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~l~l~ 1063 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFMIWMN 1063 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998777777799999999999999999999999999876543
No 40
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.22 E-value=7.8e-10 Score=88.66 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh--cCCCCHHHHHHHHHHHHh
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT--SKNQFDSECTGIVLRKTG 91 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~g 91 (150)
+..++..++++...+..++|.+.++|.++|.. ....-..++|..++|.+.+.++.+|+. .++.+.+|.+.++..+.-
T Consensus 149 ~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~-~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~l 227 (297)
T PRK13021 149 WRLASGALFALVHDVIFVLAFFALTQMEFNLT-VLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATF 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHH-HHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45678888899999999999999999999985 345566789999999999999999775 344588999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8504 92 LSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSL 144 (150)
Q Consensus 92 ~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l 144 (150)
.+++.|++|+.++...+.+..-+.+|.|++....|++.....++.+=++++..
T Consensus 228 rr~l~TslTt~l~llpL~l~G~~~~~~fA~~li~Gli~gt~sslfva~pl~~~ 280 (297)
T PRK13021 228 SRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEL 280 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888889999999999999999999999888877643
No 41
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.21 E-value=4.3e-11 Score=109.64 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
++..++++-++++.++..+.++|.+++... .+...+++|+.+||++++++++++..+++.+.+|++.++.++..+|+++
T Consensus 905 ~lii~~~iPl~~~g~~~~l~~~g~~l~~~s-~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~ 983 (1051)
T TIGR00914 905 ALLVFTGIPFALTGGVFALWLRGIPLSISA-AVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLM 983 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHH
Confidence 555666777888888888889999999864 5667778999999999999999988777779999999999999999999
Q ss_pred HHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 97 SSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 97 tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
|++||++||.-.++.+ -+..+.+++....|++++.++++++.|+++.+..||+
T Consensus 984 ttltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~~~~~~~ 1039 (1051)
T TIGR00914 984 TALVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRR 1039 (1051)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999988763 4567789999999999999999999999998866654
No 42
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.18 E-value=1.2e-09 Score=97.77 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=114.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc--CCCCHHHHHHHHHHHH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS--KNQFDSECTGIVLRKT 90 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~--~~~~~~~~i~~~l~~~ 90 (150)
++..++.+++....-+++++|++.++|.+++... ...-..++|.+++|.+++.++++|+.+ ++.+.+|....++.++
T Consensus 694 ~~~fa~~avial~hDv~i~~g~~~l~g~~ls~~~-iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~t 772 (855)
T PRK14726 694 EWQFAVGAIIATLHDVILTLGLFVLTGIEFNLTS-IAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQT 772 (855)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 3456888999999999999999999999999964 455567899999999999999997763 3336566666667666
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 91 GLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 91 g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
..-++.|++||.+++..+.+...+.++.|++....|++.....++.+-++++.+-.+|
T Consensus 773 l~Rii~TslTTll~llpL~l~G~~~i~~fai~li~Gli~gt~sSifvAspll~~~~~~ 830 (855)
T PRK14726 773 LSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIVFKLR 830 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6668999999999999998888999999999999999999999999999987654333
No 43
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.14 E-value=2.6e-10 Score=103.53 Aligned_cols=136 Identities=18% Similarity=0.327 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCC----cccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIP----FNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRK 89 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~----~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~ 89 (150)
+..++..++.+.++...+.|+..++... .+.++......+.+|+|+||+.-++++|+|+.+++.+++++.+++++.
T Consensus 208 ~i~a~lpL~t~~~s~~~a~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~t 287 (937)
T COG2409 208 VITAFLPLITVGLSLLVAQGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRT 287 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHh
Confidence 3447778888899999999988854433 344555667778899999999999999999988778999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 90 TGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 90 ~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
.|+.+..+..|.+.++..+.+.++|..+..++..+++|.++.+..+|+.||++++-+||.
T Consensus 288 ag~~V~~sg~tV~~a~~~l~~a~~~~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~ 347 (937)
T COG2409 288 AGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRG 347 (937)
T ss_pred ccceeehhhhHHHHHHHHHHhcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999988874
No 44
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.09 E-value=2.5e-09 Score=98.14 Aligned_cols=132 Identities=12% Similarity=0.097 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
.+.-++++.++++.++..+.++|.+++... .+--..++|+-+||++++++.+++..+++.+.+|++.++-++-..|+++
T Consensus 897 pliI~~~iPlsl~G~~~~l~~~g~~l~~~s-l~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlm 975 (1044)
T TIGR00915 897 PVSVMLVVPLGIIGALLATSLRGLSNDVYF-QVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILM 975 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHH
Confidence 455556677788888888889999999964 4666688999999999999999987777779999999999999999999
Q ss_pred HHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 97 SSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 97 tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
|++|+++||.-++++. -+..+.+++....|++++.++++++.|+++.+-.|+.
T Consensus 976 Ttltti~gllPla~~~g~g~~~~~plai~vigGL~~st~ltL~vvP~ly~~~~~~~ 1031 (1044)
T TIGR00915 976 TSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVRRLF 1031 (1044)
T ss_pred HHHHHHHHHHHHHHhcCCChHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988763 3567889999999999999999999999998765553
No 45
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.08 E-value=3.9e-09 Score=96.91 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC-----C-----CCHHHHHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK-----N-----QFDSECTGI 85 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~-----~-----~~~~~~i~~ 85 (150)
.++...+++-+|++.++.+|.++|+++|.++. . .+++|+-+||+++++++.++..++ + .++.++..+
T Consensus 367 ~~liv~~~iP~s~~~~~~~m~~~g~sln~~sl--~-~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~ 443 (1051)
T TIGR00914 367 AALIAATVIPLSLLITFIGMVFQGISANLMSL--G-ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFA 443 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH--H-HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHH
Confidence 35566677788999999999999999999753 3 466799999999998875443221 1 367788999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 86 VLRKTGLSIILSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 86 ~l~~~g~~i~~tslt~~~~f~~~~~s~~---p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
+.++.++|++.+++|++++|.-..+.+- ...+.|++....+++++++.++++.|++.+..
T Consensus 444 g~~~~~~pil~stlTti~~flPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~ 506 (1051)
T TIGR00914 444 ASREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALF 506 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876432 56799999999999999999999999998764
No 46
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.05 E-value=3.3e-09 Score=97.37 Aligned_cols=131 Identities=13% Similarity=0.118 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.+.-++++-++++.++..+.++|.+++... .+--.+++|+-+||++++++..++.. +++.+.+|++.++-++-.+|++
T Consensus 898 pliI~~~IPls~~Ga~~~l~~~g~~l~~~s-l~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIl 976 (1049)
T PRK15127 898 PFSVMLVVPLGVIGALLAATFRGLTNDVYF-QVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPIL 976 (1049)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHH
Confidence 455566777888999999999999999863 46666788999999999999998754 3456899999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
+|++|+++||.-.++.. -+..+-+++....|++++.++++++.|+++.+-.||
T Consensus 977 mTtlTti~gllPl~l~~G~g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~~~~~ 1032 (1049)
T PRK15127 977 MTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRR 1032 (1049)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988764 356677999999999999999999999999876555
No 47
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.05 E-value=1.5e-09 Score=99.38 Aligned_cols=132 Identities=21% Similarity=0.318 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC-CCCHHHHHHHHHHHHhHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK-NQFDSECTGIVLRKTGLSI 94 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~-~~~~~~~i~~~l~~~g~~i 94 (150)
.++...+++-+|++.++.+|+++|+++|.++. ..-.+.+|+=+||+++..+..++..++ +.++.++..++.+++++|+
T Consensus 357 ~~liv~~~IPisi~~t~~~m~~~g~slN~~SL-~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i 435 (1021)
T PF00873_consen 357 SALIVALSIPISILGTFIFMYLFGISLNIMSL-AGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPI 435 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH-HhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 35566677778999999999999999999753 444455565589999999999877766 7799999999999999999
Q ss_pred HHHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 95 ILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 95 ~~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
+.+++||+++|.-..+.+ -.-++.|++...+++++.++.++|+.|.+.+...|+
T Consensus 436 ~~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~ 492 (1021)
T PF00873_consen 436 LASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKP 492 (1021)
T ss_dssp HHHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS--
T ss_pred HHHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 999999999999988765 455789999999999999999999999998765443
No 48
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.00 E-value=1.2e-08 Score=93.59 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
.+.-++++-++++.++..+.++|.+++... .+--.+++|+-+||++.+++..++..+++.+.+|++.++-++-.+|+++
T Consensus 896 pliI~~~IPlal~G~l~~L~i~g~~l~~~s-l~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlm 974 (1037)
T PRK10555 896 PFSVMLVVPLGVIGALLATWMRGLENDVYF-QVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILM 974 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHH
Confidence 455566677888888888999999999864 4666788899999999999999876666668999999999999999999
Q ss_pred HHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 97 SSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 97 tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
|++|+++|+.-.++.. -+..+-+++....|++++.++++++.|+++.+-.||.
T Consensus 975 Ttltti~gllPlal~~g~g~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~~~~ 1030 (1037)
T PRK10555 975 TSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLVRRRF 1030 (1037)
T ss_pred HHHHHHHHHHHHHHhcCCChHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999988763 3677889999999999999999999999999866653
No 49
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.96 E-value=1.4e-08 Score=93.33 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhh-hcCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKY-TSKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.+.-++++-++++.++..+.++|.++|... .+--.+++|+-+||++.+++..++. ++++.+++|++.++-++-.+|++
T Consensus 891 pliI~~tIPls~~G~~~~l~l~g~~l~~~s-liGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIl 969 (1040)
T PRK10503 891 PITILSTLPTAGVGALLALMIAGSELDVIA-IIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPIL 969 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHH
Confidence 444556677788888888889999999964 4666688899999999999987753 55666899999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
+|++|+++||.-.++.+ -+..+-+++....|++++.++++++.|+++.+-
T Consensus 970 mTtltti~gllPlal~~G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~~ 1022 (1040)
T PRK10503 970 MTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLF 1022 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988763 346788999999999999999999999998875
No 50
>PRK09579 multidrug efflux protein; Reviewed
Probab=98.94 E-value=1.1e-08 Score=93.80 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 95 (150)
.+.-++++.++++.++..+.++|.+++... .+--.+++|+-++|++.+++.+++.+ +++.+.+|++.++-++-..|++
T Consensus 871 pliI~~~iPla~~G~~~~L~i~~~~l~~~s-~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIl 949 (1017)
T PRK09579 871 PLVILVTVPLSICGALIPLFLGVSSMNIYT-QVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVL 949 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHH
Confidence 444555666777777777788999999863 46666889999999999999988765 3466899999999999999999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
+|++||++||.-.++.. -+..+.+++...-|++++.++++++.|+++.+-.||++
T Consensus 950 mTtlTti~gllPla~~~g~g~~~~~plA~~iigGL~~st~ltL~~iP~ly~l~~~~~~ 1007 (1017)
T PRK09579 950 MTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDA 1007 (1017)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHhCCceeeeehHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999987763 34556789999999999999999999999998777654
No 51
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.90 E-value=1e-07 Score=76.68 Aligned_cols=138 Identities=19% Similarity=0.257 Sum_probs=115.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc--CCCCHHHHHHHHHH
Q psy8504 11 KSQAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS--KNQFDSECTGIVLR 88 (150)
Q Consensus 11 ~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~--~~~~~~~~i~~~l~ 88 (150)
|=++..++.++++.+-=++.++|+++++|+++|+.+. ..-.-++|=.+||.+.+.+|.+|+.+ +..+..|.+..++.
T Consensus 154 RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l~~I-AAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~ 232 (305)
T COG0341 154 RFEWRFALAAILALLHDVIITLGFFSLFGIEFNLATI-AALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSIN 232 (305)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHhheeecHHHH-HHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHH
Confidence 3345568889999999999999999999999999643 44456788889999999999998663 33477788999998
Q ss_pred HHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 89 KTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 89 ~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
++-.-...|++|+.+......+-.-+.+++|+...-+|++.+..=++.+=++++.+..+|+
T Consensus 233 qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~llvGii~gtySSifiA~pll~~~~~~~ 293 (305)
T COG0341 233 QTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLLLGKRR 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 8888889999999999777776666999999999999999999999988888887665543
No 52
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=98.88 E-value=3.7e-08 Score=91.50 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSI 94 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i 94 (150)
+-++...+++.+.++..+|+|.+.|+++|.+. .+.-.+.+|+++|..-|+.++|.+.. ..++++|..++++++|.|+
T Consensus 1074 ~~aliv~l~I~~i~~~~~g~M~~~gisLN~vS-lv~Li~avGisV~f~~hI~~~f~~~~--~~~~~~ra~~al~~vg~~v 1150 (1204)
T TIGR00917 1074 LSAVNVVISVGMIVVNLVGIMHLWNISLNAVS-VVNLVMAKGISIEFCSHINAQFSTSK--HFSRNHRAKEALGGMGSSV 1150 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHhhhHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHH
Confidence 44666677888899999999999999999974 56666788999999999999887532 2378999999999999999
Q ss_pred HHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q psy8504 95 ILS-SVCKSVAFFSASLIPIPALRVFNLQLAIL-ILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 95 ~~t-slt~~~~f~~~~~s~~p~i~~F~i~a~l~-v~~~~~~~~t~~pa~L~l~ 145 (150)
+.. ++|+.+|+..+++++....+.|--.+-++ |++..+--+.++|.+|++-
T Consensus 1151 ~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS~~ 1203 (1204)
T TIGR00917 1151 FSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYI 1203 (1204)
T ss_pred HHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988 68999999999999999999875555553 4779999999999999874
No 53
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=98.86 E-value=2e-08 Score=91.73 Aligned_cols=130 Identities=19% Similarity=0.342 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
++...+.+-+|++.++++|..+|+++|.++ ...-.+.+|+=+||+++.++...+..+ +.++.|+..+++++.+.+++.
T Consensus 356 tlI~~iaiPlsLlgtf~~m~~~GfslN~lT-L~aLiLAiGllVDDAIVVvENI~R~~~-G~~p~~Aa~~a~~ei~~~via 433 (1009)
T COG0841 356 TLIPALAVPVSLLGTFAVMYAFGFSLNTLT-LFALVLAIGLLVDDAIVVVENIERHMR-GLPPREAAEKAMGEIGGAVIA 433 (1009)
T ss_pred eEEeeeechHHHHHHHHHHHHhCccchHhH-HHHHHHhhheeEeccEEEEeeEEeecC-CCCHHHHHHHHHHHHHHHHHH
Confidence 455566777899999999999999999975 355556677778999998887766555 779999999999999999999
Q ss_pred HHHHHHHHHHHhccCC-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 97 SSVCKSVAFFSASLIP-I--PALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 97 tslt~~~~f~~~~~s~-~--p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
++++.++.|.-.++.+ + +-.|+|++..++++++.++..+|+-|.+-+.-.|+
T Consensus 434 ~TlvliaVF~Pi~f~~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~ 488 (1009)
T COG0841 434 ITLVLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKP 488 (1009)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999877543 3 34699999999999999999999999998865554
No 54
>PRK09577 multidrug efflux protein; Reviewed
Probab=98.85 E-value=5.7e-08 Score=89.24 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
.+.-++++-+++..++..+.++|.+++... .+--.+++|+-++|++++++..++..+++.+.+|++.++-++-.+|+++
T Consensus 892 plii~~~iPl~l~G~~~~l~l~g~~l~~~s-~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlm 970 (1032)
T PRK09577 892 PFAVMLVVPLGVIGAVLGVTLRGMPNDIYF-KVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVM 970 (1032)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHH
Confidence 455566667777777777888999999863 4556688999999999999999877666679999999999999999999
Q ss_pred HHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 97 SSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 97 tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
|++|+++|+.-.+++. -+..+-.++...-|++++.++++.+.|+++.+-
T Consensus 971 Ttltti~gllPla~~~g~g~~~~~pla~~iigGL~~sT~lTL~vvP~ly~l~ 1022 (1032)
T PRK09577 971 TSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVV 1022 (1032)
T ss_pred HHHHHHHHHHHHHHccCCChHHhcCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988763 345567899999999999999999999998864
No 55
>KOG3664|consensus
Probab=98.80 E-value=1.9e-09 Score=96.34 Aligned_cols=137 Identities=25% Similarity=0.456 Sum_probs=116.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-HhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc----------------
Q psy8504 12 SQAGVGILGCCLISFSILAGLGFCS-ILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS---------------- 74 (150)
Q Consensus 12 sk~~l~l~~~~~~~~s~~~~~G~~~-~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~---------------- 74 (150)
+.....+.+...++++...+++++. .+|+++-+....+.-++++|||.||.|.+.+.|++..+
T Consensus 347 ~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l 426 (999)
T KOG3664|consen 347 GSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLEL 426 (999)
T ss_pred CcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhccccccc
Confidence 4455688899999999999999999 48899999877777788999999999999999943111
Q ss_pred --CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 75 --KNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 75 --~~~~~~~~i~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
..+...+.....+++...+|.+|+++++.+|+...-++.+.+|.|+++++..+.++|..+.+.+||..++..++
T Consensus 427 ~~~~~ll~~~~~l~~~h~~~smfvt~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~ 502 (999)
T KOG3664|consen 427 SDHTELLENVFALTLRHASFSMFVTSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRL 502 (999)
T ss_pred ccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhcc
Confidence 01234456777889999999999999999999999999999999999999999999999999999987776543
No 56
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=98.76 E-value=1.5e-07 Score=86.52 Aligned_cols=130 Identities=10% Similarity=0.065 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC-CCCHHHHHHHHHHHHhHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK-NQFDSECTGIVLRKTGLSII 95 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~-~~~~~~~i~~~l~~~g~~i~ 95 (150)
.+.-++++-++++.++..+.++|.+++.. ..+--..++|+-++|++.+++.+++..++ +.+.+|++.++-++--.|++
T Consensus 877 pliI~~tIPlal~G~~~~L~l~g~~l~~~-s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIl 955 (1025)
T PRK10614 877 PLTILSTLPSAGVGALLALELFNAPFSLI-ALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIM 955 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHH-HHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHH
Confidence 44455667778888888888999999985 45666688999999999999988866544 55899999999888889999
Q ss_pred HHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 96 LSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 96 ~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
+|++|+++|+.-.++.. -+..+-+++...-|++++.++++++.|+++.+-.|
T Consensus 956 mTtlTti~GllPlal~~g~g~~~~~pmAi~iigGL~~sT~ltL~vvP~lY~~~~~ 1010 (1025)
T PRK10614 956 MTTLAALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDR 1010 (1025)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHhCCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988763 24578899999999999999999999999987633
No 57
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.71 E-value=5.8e-07 Score=75.28 Aligned_cols=114 Identities=15% Similarity=0.234 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8504 25 SFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVA 104 (150)
Q Consensus 25 ~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~tslt~~~~ 104 (150)
...++..+|++.++|.+++... ..--.+.+|+++||.+++.++.+++.. . +.++++.+.+++...+++.+++|+.++
T Consensus 296 ~~~v~~~lg~l~l~g~tLtl~~-IaGlIl~iGmaVD~~IvI~e~i~~~~~-~-~~~~ai~~g~~~a~~~Il~t~lTTiia 372 (417)
T PRK08343 296 LSEVIIILGFAALIGWQLDLAS-IAGIIAVIGTGVDDLIIITDEVLHEGK-V-PSRKVFLSRIKRAFFIIFAAAATTIAA 372 (417)
T ss_pred HHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHeeeCcEEEhHHHHHhCC-c-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788999999999999864 356668899999999999987765422 2 678889999999999999999999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 105 FFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 141 (150)
Q Consensus 105 f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~ 141 (150)
+..+.+....++|.|++...+|+++..+++=-+|--+
T Consensus 373 ~lpL~~~g~g~ikgfAitliiGii~s~~iTrp~~~~~ 409 (417)
T PRK08343 373 MSPLAVMGLGDLKGFAITTILGVLIGVLITRPAYGDI 409 (417)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877777899999999999998766655444433
No 58
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.70 E-value=7.6e-07 Score=79.25 Aligned_cols=132 Identities=12% Similarity=0.145 Sum_probs=111.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC--CCCHHHHHHHHHHHH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK--NQFDSECTGIVLRKT 90 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~--~~~~~~~i~~~l~~~ 90 (150)
|+-.++.+++...-=++.++|+++++|+++|... ...-..++|=++||.+++.+|.||+.+. ..+.+|.+.+++.++
T Consensus 600 ~~~fav~AviALiHDvlivlg~fsl~~~e~~l~~-IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqT 678 (758)
T PRK13023 600 RWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWS-VAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQT 678 (758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCceecHHH-HHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 3456888888888899999999999999999954 3444467889999999999999987642 347888899999888
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 91 GLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 91 g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
-.-...||+||.++..+..+-.-+.+|+|++...+|+++...-++.+=++++..-
T Consensus 679 l~RTI~TS~TTll~~l~L~ifGg~~i~~Fal~lliGiv~GtySSIfIAspl~~~~ 733 (758)
T PRK13023 679 LSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQF 733 (758)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8888999999999999999889999999999999999998887777766666543
No 59
>COG4258 Predicted exporter [General function prediction only]
Probab=98.68 E-value=9.9e-08 Score=81.89 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
++-.++++.+++.|.+....+.|+++|.+. .+.-.+++|+|+||...+-++= +++.|... +-.++.+
T Consensus 672 glrvllP~v~a~~~~~A~~a~aGvplnLfh-llal~LvlgvG~nYalFfs~~~-------~~~ae~lt-----tl~alal 738 (788)
T COG4258 672 GLRVLLPSVLALGCGLAVLAMAGVPLNLFH-LLALVLVLGVGINYALFFSNAG-------DPRAEPLT-----TLLALAL 738 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHH-HHHHHHHHHcccchhhhhhccc-------CCCCchHH-----HHHHHHH
Confidence 556778889999999999999999999985 4777899999999988774422 12222222 5667888
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 97 SSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPA 140 (150)
Q Consensus 97 tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa 140 (150)
.++||.++|+...+|.+|.++.||+..+.|++.+|++.-...|.
T Consensus 739 a~ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlApL~mp~ 782 (788)
T COG4258 739 AMLTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLAPLAMPD 782 (788)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999987765553
No 60
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.66 E-value=8.2e-07 Score=75.95 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSI 94 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i 94 (150)
..|+.+.+...+.....+|+++++|..++.... .--.+-+|.++|.=+++.++-++|.+.+.+.+.++...++++...|
T Consensus 366 ~~Gvia~ial~~n~~lil~vls~lgatLtLpgI-AGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI 444 (506)
T COG0342 366 LAGVIAAIALGLNGVLILAVLSLLGATLTLPGI-AGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTI 444 (506)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccccchhh-hHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 457778888888999999999999999999643 4455788889999999999999999888799999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 95 ILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 95 ~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
.-+.+||.++=..+..-..-++|-|++..++|++...+..+++.-.++.+-.+|
T Consensus 445 ~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~~~~~~ 498 (506)
T COG0342 445 LDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNLLVGR 498 (506)
T ss_pred HHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Confidence 999999999988888889999999999999999999999999988887765443
No 61
>KOG1934|consensus
Probab=98.66 E-value=2.1e-07 Score=83.72 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=102.7
Q ss_pred HHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy8504 30 AGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIILSSVCKSVAFFSAS 109 (150)
Q Consensus 30 ~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~tslt~~~~f~~~~ 109 (150)
..+|.|.+.|.++++++ .+.-..-+|..+|..-|+.-+|.+.+.+. ++++|+..+++..|.|++-.+++|.+|...+.
T Consensus 717 GV~G~lslW~V~LDpIS-mi~iiMsIGFSVD~~AHi~yhy~~~~~~~-t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~ 794 (868)
T KOG1934|consen 717 GVFGFLSLWGVDLDPIS-MITIIMSIGFSVDFSAHVAYHYYQSRKSS-TPRERLRSALSAVGWPVLQAGLSTILGVLPLL 794 (868)
T ss_pred hHhhhhHHhcCCccHHH-HHHHHHhCCceeeehhheeeeeEecCCCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHH
Confidence 56889999999999974 45555666777899999888887766544 89999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 110 LIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 110 ~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
+.+...++.|.=..-+.+.+..+--+.++|.+|++..+
T Consensus 795 ~V~sYmv~vF~KTv~LVv~~GllHGLv~LPviLs~f~~ 832 (868)
T KOG1934|consen 795 FVPSYMVQVFFKTVVLVVTLGLLHGLVFLPVILSLFPP 832 (868)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999997653
No 62
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=98.65 E-value=3e-07 Score=84.36 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc-CCCCHHHHHHHHHHHHhHHHHH
Q psy8504 18 ILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS-KNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 18 l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~-~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
+.-+.++-++++.++-.+.++|.+++.. ..+--..++|+-++|++.+++.+++.++ ++.+.+|++.++-++=-+|+++
T Consensus 890 liIm~~IPla~~G~~~~l~i~g~~l~~~-s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlm 968 (1021)
T PF00873_consen 890 LIIMLTIPLALIGVLLGLFITGQPLSFM-SLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILM 968 (1021)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTBEBSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhHHHHHHHhhcccccccc-ceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHH
Confidence 3444555567777777778899999996 4566678899999999999999999887 7778999999999999999999
Q ss_pred HHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8504 97 SSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIVSLD 145 (150)
Q Consensus 97 tslt~~~~f~~~~~s~~---p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~ 145 (150)
|++||++|+.-++++.- +-.+-+++...-|++++.++++.+.|+++.+-
T Consensus 969 TtlTti~G~lPla~~~g~g~~~~~pla~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 969 TTLTTILGMLPLALGIGEGAEFWQPLAIVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp HHHHHHHHHHHHHTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhccccccccccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888753 56788999999999999999999999998753
No 63
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.55 E-value=3.1e-06 Score=78.19 Aligned_cols=137 Identities=14% Similarity=0.158 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh-----CCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC--CCCHHHHHHH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSIL-----GIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK--NQFDSECTGI 85 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~-----G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~--~~~~~~~i~~ 85 (150)
++-.|+.+++..+-=++.++|+++++ |+++|... ...-.-++|-.++|++++.+|.|++.+. ..+.+|-+.+
T Consensus 1256 EW~FAvgAVIALlHDVLItLGifsl~~f~lfgiEfdltf-IAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~ 1334 (1403)
T PRK12911 1256 EWRYAFSAICALIHDLLATCAVLVALHFFLQKIQIDLQA-IGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILIND 1334 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeEEcHHH-HHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHH
Confidence 45678888888888888888888765 89999853 3444457888999999999999987642 3467777888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 86 VLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 86 ~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
++.++-.-.+.||+||.+...++.+-.-+.+++|++.+.+|+++...-++..=++++.+-.+|++
T Consensus 1335 SINQTLsRTI~TSlTTLLallaLllFGG~sI~~FAlALLIGIIvGTYSSIFIASPLll~l~~~~~ 1399 (1403)
T PRK12911 1335 ALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEE 1399 (1403)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 88888777799999999999999988889999999999999999998888888888776666553
No 64
>COG4258 Predicted exporter [General function prediction only]
Probab=98.35 E-value=6.5e-06 Score=70.99 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 18 ILGCCLISFSILAGLGFCS-ILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 18 l~~~~~~~~s~~~~~G~~~-~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
+.|++++..+..++.--.. .+| +...+| .+.-+-++|..+||.+++..+.++ .+ ...+. ++..++..|.+..
T Consensus 284 lLgvls~gig~laglvAt~laFg-~lH~lT-l~fg~slIGeAvDYsI~yfv~h~~---pG-~~~dp-~rsaaev~paL~l 356 (788)
T COG4258 284 LLGVLSIGIGALAGLVATLLAFG-ELHLLT-LVFGMSLIGEAVDYSIYYFVEHMV---PG-NDVDP-WRSAAEVRPALLL 356 (788)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh-hHhHHH-HHhhhhheeecccceeeehhhccC---CC-CCCCh-hHHHHHhhHHHHH
Confidence 3445555444444333333 222 333434 356667889999999987553332 12 11222 2337889999999
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 97 SSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIV 142 (150)
Q Consensus 97 tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L 142 (150)
..+|++++|.++.+++.|.+|+.++|+..|+..+++....++|.+.
T Consensus 357 allTtvlayatmlfs~fpgLrQLa~faivGL~aAaltvrfllP~L~ 402 (788)
T COG4258 357 ALLTTVLAYATMLFSPFPGLRQLAIFAIVGLLAAALTVRFLLPWLC 402 (788)
T ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999999999875
No 65
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=97.92 E-value=3.3e-05 Score=71.07 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
.+.-+.++-++++.++.-..+.|.+++.. ..+--..++|+-.+|++.+++..++..+++.++.|++-++-+.=-+|+++
T Consensus 876 P~~Il~tvPla~iGa~~~L~l~g~~~~i~-a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlM 954 (1009)
T COG0841 876 PFIVMLTVPLGLLGALLALLLTGLPLDVY-AQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILM 954 (1009)
T ss_pred hhHHHhhhhHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHH
Confidence 34445566677888888888999999996 45667788999999999999999988887789999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 97 SSVCKSVAFFSASLIPIP---ALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 97 tslt~~~~f~~~~~s~~p---~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
|++++.+|..-++++.-. .-+-.|+..--|++++-++++.+.|.++.+-.|
T Consensus 955 Ttla~ilG~iPLal~~g~Ga~~r~~lgi~vigGl~~sT~LtL~~vPv~Y~~~~~ 1008 (1009)
T COG0841 955 TSLAAILGVLPLALSTGAGAESRQPLGIAVVGGLLVATVLTLFVVPVFYVLVER 1008 (1009)
T ss_pred HHHHHHHhhhhhhhcccccccccCcceEEEechhHHHHHHHHhhhhhhheeeec
Confidence 999999998777665444 445677778888999999999999999887653
No 66
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=97.85 E-value=0.00014 Score=66.62 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHh
Q psy8504 17 GILGCCLISFSILAGLGFCS-----ILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTG 91 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~-----~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g 91 (150)
....+-.+..+..+++|+.. .+|.+.....-......++++|.||...++++++|+.+.+ ..++ +.++++..|
T Consensus 784 ~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g-~~~~-ii~a~~~tg 861 (937)
T COG2409 784 PAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAG-LRTG-IIRAMRGTG 861 (937)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhccc-cchh-hhhhhccCC
Confidence 44445556778888888754 4566655532222233678899999999999999999888 4666 999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8504 92 LSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVS 143 (150)
Q Consensus 92 ~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~ 143 (150)
..++...+.-+..|+.+..++++.+++-|...++|++++-++.-+++++-+.
T Consensus 862 ~Vit~ag~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~~ 913 (937)
T COG2409 862 GVITAAGLIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAIA 913 (937)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999888877765544
No 67
>KOG1935|consensus
Probab=97.78 E-value=0.00026 Score=63.29 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGL 92 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~ 92 (150)
.+|-+...+.++.....--+|+|...|++++++. .++....+|+|++-.+|..-.|--.-. ++..|...++.+.-.
T Consensus 941 npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~i~-aViLi~sVGigveFtvhv~l~FlTs~G---~rs~R~s~al~~~F~ 1016 (1143)
T KOG1935|consen 941 NPWAAGLIVCSLAIMTVELFGFMGLLGIKLSAIP-AVILIASVGIGVEFTVHVALGFLTALG---TRSQRASSALQHMFV 1016 (1143)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhceeeccch-hHHHHHHhhhchhhhHHHHHHHHHhhc---cchhHhHHhhhhcch
Confidence 4555666666666777778899999999999975 688888999999999998887764333 567788899999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy8504 93 SIILSSVCKSVAFFSASLIPIPAL-RVFNLQLAILILFNMFVLLLVYPAIVSLDLRRSR 150 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~~p~i-~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~e 150 (150)
+...-++++..+-+.++.++..-+ |.|+..+.+-+....+=-+.++|-+|++.+-|.|
T Consensus 1017 Pv~hG~lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~pE 1075 (1143)
T KOG1935|consen 1017 PVSHGALSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPKPE 1075 (1143)
T ss_pred hhhhhHHHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCcc
Confidence 999999999999999998988765 9999999988888888889999999998765544
No 68
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0099 Score=54.05 Aligned_cols=130 Identities=14% Similarity=0.214 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHH-hhhhc---CCCCHHHHHHHHHHHHhH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTF-AKYTS---KNQFDSECTGIVLRKTGL 92 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~-~~~~~---~~~~~~~~i~~~l~~~g~ 92 (150)
++....++-+|++.++-+|..+|++-|.++. .--.+-+|.=+|+++..++.- ++-.+ ++.++-+.+.++-+++++
T Consensus 361 Ali~~~~lPLS~li~f~~M~~~gi~~NlMSL-GGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~ 439 (1027)
T COG3696 361 ALIVIISLPLSLLIAFIVMNFFGISANLMSL-GGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGR 439 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhhcc-cchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhh
Confidence 5666777789999999999999999999643 322345555579987776544 33221 223555667888899999
Q ss_pred HHHHHHHHHHHHHHH-hccCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 93 SIILSSVCKSVAFFS-ASLIPIP--ALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 93 ~i~~tslt~~~~f~~-~~~s~~p--~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
|+.+..+.-.+.|.- .+++..+ ..+-.+..-.+++..+.++++|+.|++.++..|
T Consensus 440 ~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~ 497 (1027)
T COG3696 440 PVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIR 497 (1027)
T ss_pred hHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999877777765 2233322 123345566666777788999999999887655
No 69
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0097 Score=54.10 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
++.-...+-++.+.++-.+++.|.+++.. ..+-+.=+.|+.+.|.+.+++.+++..+++.+.+|++.+.=-+--.|+++
T Consensus 888 alli~~~lP~Al~GGv~~l~l~G~~lSva-s~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lM 966 (1027)
T COG3696 888 ALLIFSNLPFALIGGVIALALRGFNLSVA-AAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLM 966 (1027)
T ss_pred hHHHHhcCcHHHhhhHHHhhhcCceEeeh-hhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHH
Confidence 33444445567777777888999999985 33444457789999999999999988877779999999844444667799
Q ss_pred HHHHHHHHHHHhccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 97 SSVCKSVAFFSASLI---PIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 97 tslt~~~~f~~~~~s---~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
|.++..+|+.-..++ .-+..|-.+..+-=|++-+-++++..+|+.+.+..+|
T Consensus 967 Ta~~~~lGlvPi~~~~g~GsEV~~plA~vviGGl~tst~LtL~vlPaly~~~~~~ 1021 (1027)
T COG3696 967 TALVILLGLLPILWATGAGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALFGKR 1021 (1027)
T ss_pred HHHHHHHhhhhhhhhcCCchHhhccchheeEcceeHHHHHHHHHHHHHHHHHHHh
Confidence 999999998775543 5666777888888888999999999999999876554
No 70
>KOG1933|consensus
Probab=66.59 E-value=0.33 Score=45.77 Aligned_cols=117 Identities=22% Similarity=0.307 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHHH-HHHHHHH
Q psy8504 26 FSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIILS-SVCKSVA 104 (150)
Q Consensus 26 ~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~t-slt~~~~ 104 (150)
...+--.|+|...|+.+|.. ..+--..-+|++++...|+.+.+...... +.+||-.+++...|.++.-- ++|...+
T Consensus 1056 ~~~v~l~g~m~~~~I~~Nav-S~vNlvm~vgi~vef~~hi~~sf~~s~~~--~~~~ra~~~l~s~Gs~v~sgitlt~~~~ 1132 (1201)
T KOG1933|consen 1056 MILVNLVGFMYLWGISLNAV-SLVNLVMSVGIAVEFCVHITHSFATSSGP--DATERAEEALNSIGSSVFSGITLTKFGG 1132 (1201)
T ss_pred hhhhhHHHHHHhhceeehhh-hhhhhhhhcchhhhHHHHhhcceeeccCC--chhHHHHHHHhccCcceecceeehhcCc
Confidence 34455669999999999995 33445567788899999999988754322 78889999998888775432 3444555
Q ss_pred HHHhccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8504 105 FFSASLI--PIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDL 146 (150)
Q Consensus 105 f~~~~~s--~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~ 146 (150)
-....+. .+-.+..|..+.+..++-+.-- +.|+|..++..+
T Consensus 1133 ~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hG-liflpvlls~~g 1175 (1201)
T KOG1933|consen 1133 IIVLSFAKSQIFQVFYFRMYLGIVLVGALHG-LIFLPVLLSLLG 1175 (1201)
T ss_pred eEEEeeccccEEEEEeehHHHHHHHHHheee-eeehhhHHHhcC
Confidence 4444444 4444566777777766644433 888898888643
No 71
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=62.42 E-value=21 Score=24.22 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HhCCCcccchhhhHHHHHHhhcc
Q psy8504 16 VGILGCCLISFSILAGLGFCS--ILGIPFNASTTQIVPFLALGLSV 59 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~--~~G~~~~~~~~~~~pflvlgigv 59 (150)
+++.|.+...+.+..-+|+.. |++-.+..-....++++++|+.+
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 455666655555555555544 77777765335577788888654
No 72
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=42.52 E-value=1.1e+02 Score=20.92 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=12.7
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q psy8504 112 PIPALRVFNLQLAILILFN 130 (150)
Q Consensus 112 ~~p~i~~F~i~a~l~v~~~ 130 (150)
+.|..++.+...+..+.+.
T Consensus 89 ~~p~~~~a~~~l~~~~~~~ 107 (111)
T PF09946_consen 89 SYPEYTDAGFVLAFSLAFM 107 (111)
T ss_pred cChhHhHHHHHHHHHHHHH
Confidence 6778888777766655443
No 73
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=37.74 E-value=1.4e+02 Score=20.73 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=21.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 100 CKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 100 t~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
++++......+.+-..+....+ .+++...+..+.--+.+.++||
T Consensus 69 ~~~ii~l~~~i~~~~~~~~~~i------~i~~~i~l~vf~~~~~~ye~~e 112 (118)
T PF12676_consen 69 LLFIILLISMIFDNLELITILI------AIAFAIALLVFAISYLYYEYRE 112 (118)
T ss_pred HHHHHHHHHHHhccHHHHHHHH------HHHHHHHHHHHHHHHHHHhccH
Confidence 3333333335555555533333 4445555555555555555555
No 74
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=36.04 E-value=74 Score=20.06 Aligned_cols=46 Identities=7% Similarity=0.085 Sum_probs=33.0
Q ss_pred CHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Q psy8504 78 FDSE--CTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAIL 126 (150)
Q Consensus 78 ~~~~--~i~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~ 126 (150)
+.++ ++...+.-+||.++.++ +.+|... ...+++.-|..+++++++
T Consensus 20 ~vekAl~iNa~LalVGP~ili~t--t~iGL~g-la~kls~~kl~~I~~GV~ 67 (69)
T PF10942_consen 20 DVEKALKINALLALVGPTILILT--TTIGLAG-LADKLSPSKLLWIFAGVA 67 (69)
T ss_pred cHHHHHHHHHHHHHhccHHHHHH--HHHHHHH-HhcccCHHHHHHHHhcce
Confidence 4444 45668889999988765 4566433 348999999999988765
No 75
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=31.53 E-value=1.8e+02 Score=20.10 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 84 GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVY 138 (150)
Q Consensus 84 ~~~l~~~g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~ 138 (150)
++.+++--....++-+-|+++|.......+|.--...+...++++ ..+.|+.+|
T Consensus 22 ~~~~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvv-Qi~VqL~yF 75 (110)
T TIGR02908 22 AEEMKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAV-QVAFQLYYF 75 (110)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHH-HHHHHHHHh
Confidence 344555566677777888889888776666666656555555554 445555443
No 76
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.45 E-value=2.9e+02 Score=21.86 Aligned_cols=49 Identities=8% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHhccCCcHHHHH-HHHHHHHHHHH
Q psy8504 81 ECTGIVLRKT-GLSIILSSVCKSVAFFSASLIPIPALRV-FNLQLAILILF 129 (150)
Q Consensus 81 ~~i~~~l~~~-g~~i~~tslt~~~~f~~~~~s~~p~i~~-F~i~a~l~v~~ 129 (150)
++..+.|+.. ..++.+.-.|-++|+.-+.+..+|.... +|....+++..
T Consensus 252 ~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~ 302 (318)
T TIGR00383 252 NKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMA 302 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHH
Confidence 3445555443 4455555567777888888888999874 66666655543
No 77
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=28.19 E-value=1.8e+02 Score=25.51 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=31.2
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 104 AFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 141 (150)
Q Consensus 104 ~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~ 141 (150)
++++..=.|.+..+.|-..+.++..+++++.+.++|..
T Consensus 377 ~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~ 414 (650)
T PF04632_consen 377 SLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHL 414 (650)
T ss_pred HHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455557889999999999999999999999888854
No 78
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.11 E-value=1.4e+02 Score=21.83 Aligned_cols=44 Identities=7% Similarity=0.060 Sum_probs=26.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 105 FFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 105 f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
|..|+..+++.- .+.+...-=+++-+++...+||++...-.+|+
T Consensus 8 ~~~~~~~~~~~~-t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 8 FVLGAAGGVEWG-TVIVTVLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred HHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555532 33344444445567777888999998766664
No 79
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=25.51 E-value=2.2e+02 Score=23.36 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHH
Q psy8504 18 ILGCCLISFSILAGLGFCS-ILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRK 89 (150)
Q Consensus 18 l~~~~~~~~s~~~~~G~~~-~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~ 89 (150)
+..++++....+..+.+.+ .+|++-... ....|.++++--+|.+-++ |+| + ..+|.+.+..+.
T Consensus 194 isaVli~VI~ii~~~sv~~~klGl~~gls-VtfFPmIILawTIERmSil---WEE----e-G~~ev~~qg~GS 257 (313)
T PF14402_consen 194 ISAVLIVVILIIAAFSVLSYKLGLEEGLS-VTFFPMIILAWTIERMSIL---WEE----E-GAKEVLKQGGGS 257 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCe-eehHHHHHHHHHHHHHHhh---hhh----c-CcHHHHHHhhhH
Confidence 3445555556666666666 588887774 5689999998877765554 322 2 455555554443
No 80
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=24.12 E-value=3.2e+02 Score=24.72 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8504 102 SVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 141 (150)
Q Consensus 102 ~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~ 141 (150)
+.++++..=.|.|.+++|.+-+.+++...+++.+..+|..
T Consensus 388 ~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i 427 (652)
T PRK10631 388 VTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNT 427 (652)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666777889999999999999999999999999874
No 81
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.18 E-value=4e+02 Score=21.05 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=20.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy8504 11 KSQAGVGILGCCLISFSILAGLGFCSILGIPFNA 44 (150)
Q Consensus 11 ~sk~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~ 44 (150)
++|....-.|....+.+++++++....++.-+..
T Consensus 10 ~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~ 43 (301)
T PF14362_consen 10 AERNKYAGIGAAVLFTALLAGLSGGYALYTVFGG 43 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555666666667777777666654444443
No 82
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=21.48 E-value=4.1e+02 Score=20.87 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHHhCC-CcccchhhhHHH--HHHhhccccEEeehHHHhhhhc-----------CCCCHHHHH----HHHHHHHhHH
Q psy8504 32 LGFCSILGI-PFNASTTQIVPF--LALGLSVDDMFLITKTFAKYTS-----------KNQFDSECT----GIVLRKTGLS 93 (150)
Q Consensus 32 ~G~~~~~G~-~~~~~~~~~~pf--lvlgigvd~~~~l~~~~~~~~~-----------~~~~~~~~i----~~~l~~~g~~ 93 (150)
+......|. ++++ ...+|. +++|=..+-.-.-.|+|.++-+ .+.+++|+. +++++..-.|
T Consensus 110 l~~lvl~~~~~~~~--r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~ai~~al~P 187 (250)
T PF03649_consen 110 LLLLVLRGAPWFDP--RYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIRRAIRAALIP 187 (250)
T ss_pred HHHHHHcCCCCCCh--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhHh
Confidence 333444444 5555 468897 4444334444444566654432 134667764 4455554444
Q ss_pred HHHHHHHHH--------HHHHHhccCCcHHHHH
Q psy8504 94 IILSSVCKS--------VAFFSASLIPIPALRV 118 (150)
Q Consensus 94 i~~tslt~~--------~~f~~~~~s~~p~i~~ 118 (150)
.+-+.-+.. .|-..+..+|..+++.
T Consensus 188 ~i~~m~~vGlVslPGmMtG~IL~G~sP~~Av~y 220 (250)
T PF03649_consen 188 TINSMKTVGLVSLPGMMTGQILGGASPLQAVRY 220 (250)
T ss_pred HHHhhhhhheeechHHHHHHHHcCCCHHHHHHH
Confidence 332222211 1333355666666654
No 83
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.00 E-value=3.7e+02 Score=21.73 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCCcccch
Q psy8504 25 SFSILAGLGFCSILGIPFNAST 46 (150)
Q Consensus 25 ~~s~~~~~G~~~~~G~~~~~~~ 46 (150)
..+++.+.|.-..+|++++..+
T Consensus 117 ~~Gil~~aG~aaiFGISl~~lp 138 (283)
T PF06550_consen 117 IAGILMGAGAAAIFGISLGILP 138 (283)
T ss_pred HHHHHHHhHHHHHHhhhccHHH
Confidence 3466777888899999999865
No 84
>PF14184 YrvL: Regulatory protein YrvL
Probab=20.60 E-value=3.2e+02 Score=19.29 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccE
Q psy8504 26 FSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDM 62 (150)
Q Consensus 26 ~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~ 62 (150)
.-.....|++.++|++++... .+.-|.++...+...
T Consensus 20 ~~ff~~~gif~L~Gi~Y~S~~-~llLF~li~~~lg~~ 55 (132)
T PF14184_consen 20 IYFFVMVGIFHLLGIEYESVG-SLLLFFLIIFVLGLP 55 (132)
T ss_pred HHHHHHHHHHHHhCcccccHH-HHHHHHHHHHHHHHH
Confidence 345567789999999999974 566666666555433
Done!