Query psy8504
Match_columns 150
No_of_seqs 115 out of 1079
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 20:38:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 99.7 4.4E-17 1.5E-21 142.9 14.3 134 14-148 295-428 (741)
2 3aqp_A Probable secdf protein- 99.7 9E-16 3.1E-20 134.5 13.1 136 13-149 590-727 (741)
3 4dx5_A Acriflavine resistance 99.6 9.9E-15 3.4E-19 131.8 13.6 134 14-148 362-499 (1057)
4 2v50_A Multidrug resistance pr 99.6 4.5E-15 1.5E-19 134.1 10.4 132 15-147 363-498 (1052)
5 4dx5_A Acriflavine resistance 99.6 2.1E-14 7.3E-19 129.7 12.7 132 16-148 897-1032(1057)
6 2v50_A Multidrug resistance pr 99.5 6.4E-14 2.2E-18 126.6 9.8 130 17-147 897-1029(1052)
7 3ne5_A Cation efflux system pr 99.5 1.3E-13 4.5E-18 124.5 9.5 134 15-149 902-1049(1054)
8 3ne5_A Cation efflux system pr 99.4 8.2E-14 2.8E-18 125.9 6.4 134 14-148 367-514 (1054)
9 2lco_A WALP19-P8 peptide; prol 27.2 57 0.0019 15.3 2.6 20 13-32 2-21 (26)
10 2k9j_B Integrin beta-3; transm 22.1 1E+02 0.0035 16.5 4.6 23 127-149 20-42 (43)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.73 E-value=4.4e-17 Score=142.85 Aligned_cols=134 Identities=18% Similarity=0.160 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLS 93 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~ 93 (150)
+..++...+++.+++++++|++.++|.++|..+ ...+.+.+|+++||.+|+.++|+++.+++.++++++.+++++.+++
T Consensus 295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l~~-i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~ 373 (741)
T 3aqp_A 295 PHLGLVASLGLLYTSALILGLLSGLGATLTLPG-IAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT 373 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 446788889999999999999999999999975 5778899999999999999999998887779999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 94 IILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 94 i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
++.+++|++++|..+.+.+.+.+|.||+..++|++++++.++++.|+++.+..||
T Consensus 374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~ 428 (741)
T 3aqp_A 374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADR 428 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999876554
No 2
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.65 E-value=9e-16 Score=134.55 Aligned_cols=136 Identities=16% Similarity=0.235 Sum_probs=122.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC--CCCHHHHHHHHHHHH
Q psy8504 13 QAGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK--NQFDSECTGIVLRKT 90 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~--~~~~~~~i~~~l~~~ 90 (150)
++..++..++++.+++.+++|++.++|.+++..+ .+....++|+++||++|+.++|+++.++ +.+.+|++.+++++.
T Consensus 590 s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~~~~-i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~ 668 (741)
T 3aqp_A 590 DWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPT-IAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQT 668 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566888899999999999999999999999864 3555567999999999999999987753 348999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 91 GLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 91 g~~i~~tslt~~~~f~~~~~s~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
+++++.|++|++++|..+.+++.+.++.||+..+.|++++.+..+++.|+++.+-.||+
T Consensus 669 ~~~il~Tsltt~~g~~~L~~~g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 669 LSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999998766554
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.59 E-value=9.9e-15 Score=131.84 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC-CCCHHHHHHHHHHHHhH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK-NQFDSECTGIVLRKTGL 92 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~-~~~~~~~i~~~l~~~g~ 92 (150)
+..++..++++.++++++++++.++|.++|..+ .+...+.+|+++||+++++++++++.++ +.+++|++.++.++.++
T Consensus 362 ~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~s-l~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~ 440 (1057)
T 4dx5_A 362 FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLT-MFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQG 440 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344677888899999999999999999999975 4677789999999999999999987653 66999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 93 SIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 93 ~i~~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
|+++|++|++++|....+++ -+..+.|++..+.|++++++.++++.|+++++..||
T Consensus 441 pi~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~ 499 (1057)
T 4dx5_A 441 ALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKP 499 (1057)
T ss_dssp HHHHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988 677899999999999999999999999999876554
No 4
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.58 E-value=4.5e-15 Score=134.10 Aligned_cols=132 Identities=17% Similarity=0.285 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhh-cCCCCHHHHHHHHHHHHhHH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYT-SKNQFDSECTGIVLRKTGLS 93 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~g~~ 93 (150)
..++..++++.++++++++++.++|.++|..+ .+.+.+++|+++||++|++++|+++. +++.+++|++.++.++.++|
T Consensus 363 ~~~li~~~~ip~s~~~~~~~l~~~g~~ln~~s-~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~p 441 (1052)
T 2v50_A 363 RATLIPTIAVPVVLLGTFGVLAAFGFSINTLT-MFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGA 441 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34777788889999999999999999999975 57778899999999999999998876 55668999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 94 IILSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 94 i~~tslt~~~~f~~~~~s~~---p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
+++|++|++++|....+++. +..+.||+..+.|++++++.++++.|+++++..|
T Consensus 442 il~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~ 498 (1052)
T 2v50_A 442 LVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLK 498 (1052)
T ss_dssp THHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988 5899999999999999999999999999987543
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.56 E-value=2.1e-14 Score=129.67 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhh-hcCCCCHHHHHHHHHHHHhHHH
Q psy8504 16 VGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKY-TSKNQFDSECTGIVLRKTGLSI 94 (150)
Q Consensus 16 l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~~g~~i 94 (150)
.++..++++.++++.+++.+.++|.++|..+ .+...+++|+++||+++++++++++ .+++.+.+|++.++.++.++++
T Consensus 897 ~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~-~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpi 975 (1057)
T 4dx5_A 897 IPFSVMLVVPLGVIGALLAATFRGLTNDVYF-QVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPI 975 (1057)
T ss_dssp THHHHHTTHHHHHHHHHHHHHHHTCCBCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHH
Confidence 4666777888999999999999999999964 4666688999999999999999998 7777799999999999999999
Q ss_pred HHHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 95 ILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 95 ~~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
++|++|+++||..+.+++ .+.++.||+..+.|++++.++.+++.|+++.+-.+|
T Consensus 976 l~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~ 1032 (1057)
T 4dx5_A 976 LMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRR 1032 (1057)
T ss_dssp HHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999985 899999999999999999999999999999876543
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.49 E-value=6.4e-14 Score=126.62 Aligned_cols=130 Identities=11% Similarity=0.062 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcCCCCHHHHHHHHHHHHhHHHHH
Q psy8504 17 GILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLSIIL 96 (150)
Q Consensus 17 ~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ 96 (150)
++..++++.++++.+++.+.++|.+++..+ .+...+++|+++||++|++++++++.+++.+.+|++.++.++.+.++++
T Consensus 897 ~l~il~~ip~~~~g~~~~~~~~g~~l~~~~-~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~ 975 (1052)
T 2v50_A 897 PFSVMLVVPLGVIGALLATSMRGLSNDVFF-QVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVM 975 (1052)
T ss_dssp THHHHTHHHHHHTTHHHHHHHTTCCBSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHH
Confidence 455566777888999999999999999864 4666788999999999999999988777779999999999999999999
Q ss_pred HHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8504 97 SSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIVSLDLR 147 (150)
Q Consensus 97 tslt~~~~f~~~~~s~~---p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~r 147 (150)
|++|+++||..+.+++. +..+.+|+..+.|++++.+..+++.|+++.+..|
T Consensus 976 t~~tt~~g~~pl~~~~~~g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~ 1029 (1052)
T 2v50_A 976 TSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVST 1029 (1052)
T ss_dssp HHHHHHTTSHHHHTCCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcCCCChhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887 8899999999999999999999999999986554
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.46 E-value=1.3e-13 Score=124.50 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhc------C-----CCCHHHHH
Q psy8504 15 GVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTS------K-----NQFDSECT 83 (150)
Q Consensus 15 ~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~------~-----~~~~~~~i 83 (150)
..++..++++.+++++++|.+.++|.++|..+ .+...+++|+++||++++++++++..+ + +.+.+|++
T Consensus 902 ~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~-~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai 980 (1054)
T 3ne5_A 902 GEALLIISSVPFALVGGIWLLWWMGFHLSVAT-GTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEAL 980 (1054)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHHH
Confidence 34677778888999999999999999999964 566678899999999999977766544 2 34778999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8504 84 GIVLRKTGLSIILSSVCKSVAFFSASLI---PIPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 84 ~~~l~~~g~~i~~tslt~~~~f~~~~~s---~~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
.++.++.++++++|++|+++||..+.++ ..+..+.||+..+.|++++.+.++++.|+++.+-.+|.
T Consensus 981 ~~a~~~~~rpil~t~ltti~g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~~ 1049 (1054)
T 3ne5_A 981 YHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHR 1049 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTTC
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998 47889999999999999999999999999998765543
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.44 E-value=8.2e-14 Score=125.85 Aligned_cols=134 Identities=10% Similarity=0.113 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhHHHHHHhhccccEEeehHHHhhhhcC-----------CCCHHHH
Q psy8504 14 AGVGILGCCLISFSILAGLGFCSILGIPFNASTTQIVPFLALGLSVDDMFLITKTFAKYTSK-----------NQFDSEC 82 (150)
Q Consensus 14 ~~l~l~~~~~~~~s~~~~~G~~~~~G~~~~~~~~~~~pflvlgigvd~~~~l~~~~~~~~~~-----------~~~~~~~ 82 (150)
+..++...+++.++++++++.+.++|.++|..+ ...+.+++|+++||+++++++++++.++ +.+++++
T Consensus 367 ~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~s-l~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a 445 (1054)
T 3ne5_A 367 VRSALVAIISLPLGLCIAFIVMHFQGLNANIMS-LGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQV 445 (1054)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHTCCBCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHH
Confidence 334777888889999999999999999999975 5777789999999999999999877654 5578899
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy8504 83 TGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIVSLDLRR 148 (150)
Q Consensus 83 i~~~l~~~g~~i~~tslt~~~~f~~~~~s~---~p~i~~F~i~a~l~v~~~~~~~~t~~pa~L~l~~rR 148 (150)
+.++.++.+++++.+++|++++|....+++ .+..+.|++..+.|++++++.++++.|+++++..||
T Consensus 446 ~~~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~ 514 (1054)
T 3ne5_A 446 ITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRG 514 (1054)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999987 778899999999999999999999999999875543
No 9
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=27.24 E-value=57 Score=15.33 Aligned_cols=20 Identities=0% Similarity=-0.046 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy8504 13 QAGVGILGCCLISFSILAGL 32 (150)
Q Consensus 13 k~~l~l~~~~~~~~s~~~~~ 32 (150)
.+|+++.+.+...++..|+.
T Consensus 2 gwwlalapalalalalwwa~ 21 (26)
T 2lco_A 2 GWWLALAPALALALALWWAX 21 (26)
T ss_pred chHHHHhHHHHHHHHHHHHh
Confidence 36788888888888888774
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.10 E-value=1e+02 Score=16.54 Aligned_cols=23 Identities=22% Similarity=0.467 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc
Q psy8504 127 ILFNMFVLLLVYPAIVSLDLRRS 149 (150)
Q Consensus 127 v~~~~~~~~t~~pa~L~l~~rR~ 149 (150)
++.-=++.+..+--+..+++|||
T Consensus 20 ivliGl~lLliwk~~~~i~DrrE 42 (43)
T 2k9j_B 20 ILLIGLAALLIWKLLITIHDRKE 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHheehhhc
Confidence 44445556667777888888887
Done!