RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8504
         (150 letters)



>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 60  DDMFLITKTFAKYTSKNQFDSECTGIVLRKTGLS 93
           D M L+ + + +Y ++ + + E   I  + +G S
Sbjct: 96  DAMVLVARNYERYKNECR-EKEREEIARQASGPS 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.426 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,132
Number of extensions: 19688
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 4
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (22.9 bits)