BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8505
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTPVYT 74
G+QK +++HN E+ V K+I A S F + + K P+Y
Sbjct: 161 GTQKVTYLVHNFEEGGGV-----------AMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 210 STKNTILKKYDGRFK 224
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTPVYT 74
G+QK +++HN E+ V K+I A S F + + K P+Y
Sbjct: 166 GTQKVTYLVHNFEEGGGV-----------AMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 214
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 215 STKNTILKKYDGRFK 229
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTPVYT 74
G+QK +++HN E+ V K+I A S F + + K P+Y
Sbjct: 161 GTQKVTYLVHNFEEGGGV-----------AMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 210 STKNTILKKYDGRFK 224
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTPVYT 74
G+QK +++HN E+ V K+I A S F + + K P+Y
Sbjct: 161 GTQKVTYLVHNFEEGGGV-----------AMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 209
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 210 STKNTILKKYDGRFK 224
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTPVYT 74
G+QK +++H+ E+ V K+I A S F + + K P+Y
Sbjct: 158 GTQKVTYMVHDFEEGGGV-----------AMGMYNQDKSIEDFAHSSFQMALSKGWPLYL 206
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 207 STKNTILKKYDGRFK 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,680,501
Number of Sequences: 62578
Number of extensions: 73471
Number of successful extensions: 102
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)