BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8505
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17LR9|MED20_AEDAE Mediator of RNA polymerase II transcription subunit 20 OS=Aedes
aegypti GN=MED20 PE=3 SV=1
Length = 219
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 80/102 (78%), Gaps = 11/102 (10%)
Query: 13 HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
+G+ KTVH+LHNSEQPASVFSIL++G K IP+V D LFDLLM +++PV
Sbjct: 50 QIGATKTVHILHNSEQPASVFSILDTGT-----------KQIPLVTDGLFDLLMTRISPV 98
Query: 73 YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
YTSKKQTK+ESKGPRFE GDF +KLGSV++SQNFK VLVEV
Sbjct: 99 YTSKKQTKIESKGPRFEFGDFLIKLGSVTMSQNFKGVLVEVE 140
>sp|Q7Q6Y4|MED20_ANOGA Mediator of RNA polymerase II transcription subunit 20 OS=Anopheles
gambiae GN=MED20 PE=3 SV=6
Length = 218
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 76/102 (74%), Gaps = 11/102 (10%)
Query: 13 HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
LG KTVH+LHNSEQPASVFSIL++G K IP+V D LFDLLM ++ P
Sbjct: 49 QLGPPKTVHILHNSEQPASVFSILDTGT-----------KQIPLVTDGLFDLLMTRIAPA 97
Query: 73 YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
YTSKKQTK+ESKG RFE GDF +KLGSV++SQNFK VLVEV
Sbjct: 98 YTSKKQTKIESKGQRFEFGDFVIKLGSVTMSQNFKGVLVEVE 139
>sp|P91641|MED20_DROME Mediator of RNA polymerase II transcription subunit 20
OS=Drosophila melanogaster GN=MED20 PE=1 SV=2
Length = 252
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 72/97 (74%), Gaps = 10/97 (10%)
Query: 18 KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKK 77
+ VHVLHNSE PAS FSI+++G K + +VAD++FDLLM+KMT +TSKK
Sbjct: 59 RAVHVLHNSEYPASTFSIIDNGTG----------KQVAIVADNIFDLLMLKMTNTFTSKK 108
Query: 78 QTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
QTK+ES+G RFE GDF +KLGSV++ ++FK +L+E+
Sbjct: 109 QTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIE 145
>sp|Q9R0X0|MED20_MOUSE Mediator of RNA polymerase II transcription subunit 20 OS=Mus
musculus GN=Med20 PE=1 SV=1
Length = 212
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)
Query: 3 TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
TYH + LGSQ K ++V+HNSE P S F++ E+G P ++A
Sbjct: 45 TYHTAA---STLGSQGQAGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87
Query: 59 DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
D+ FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 88 DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143
>sp|Q9H944|MED20_HUMAN Mediator of RNA polymerase II transcription subunit 20 OS=Homo
sapiens GN=MED20 PE=1 SV=1
Length = 212
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)
Query: 3 TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
TYH + LGSQ K ++V+HNSE P S F++ E+G P ++A
Sbjct: 45 TYHTAA---STLGSQGQTGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87
Query: 59 DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
D+ FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 88 DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143
>sp|Q4R4S8|MED20_MACFA Mediator of RNA polymerase II transcription subunit 20 OS=Macaca
fascicularis GN=MED20 PE=2 SV=1
Length = 212
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)
Query: 3 TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
TYH + LGSQ K ++V+HNSE P S F++ E+G P ++A
Sbjct: 45 TYHTAA---STLGSQGQTGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87
Query: 59 DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
D+ FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 88 DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143
>sp|Q5XIE9|MED20_RAT Mediator of RNA polymerase II transcription subunit 20 OS=Rattus
norvegicus GN=Med20 PE=2 SV=1
Length = 212
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)
Query: 3 TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
TYH + LGSQ K ++V+HNSE P S F++ E+G P ++A
Sbjct: 45 TYHTAA---STLGSQGQAGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87
Query: 59 DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
D+ FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 88 DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143
>sp|Q5ZKY9|MED20_CHICK Mediator of RNA polymerase II transcription subunit 20 OS=Gallus
gallus GN=MED20 PE=2 SV=1
Length = 211
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 3 TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLF 62
TYH + + K ++V+HNSE P S F++ E+G P ++AD+ F
Sbjct: 45 TYHTAAAISSQGQTGKLMYVMHNSEYPLSCFALFENG-------PC-------LIADANF 90
Query: 63 DLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
D LM+K+ + + K K+ES+G R++ DF VK+G+V++ + + + VEV
Sbjct: 91 DTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 142
>sp|Q6DBX1|MED20_DANRE Mediator of RNA polymerase II transcription subunit 20 OS=Danio
rerio GN=med20 PE=2 SV=1
Length = 212
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 16/112 (14%)
Query: 3 TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLF 62
TYHA TG S K ++V+HNSE P S ++ E GGPG + AD+ F
Sbjct: 45 TYHA-TGNATGQPS-KLLYVMHNSEAPLSCMALFE----GGPG----------LSADANF 88
Query: 63 DLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
D+LM+K+ + + K KVES+G R+ DF VK+G+V++S + + + VEV
Sbjct: 89 DVLMIKLKSHFQNAKGHKVESRGTRYRYCDFLVKIGTVAMSSSARGISVEVE 140
>sp|Q6NTV8|MED20_XENLA Mediator of RNA polymerase II transcription subunit 20 OS=Xenopus
laevis GN=med20 PE=2 SV=1
Length = 211
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 15/112 (13%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSL 61
TYH G K ++V+HNSE P S F++ E+G P +VAD
Sbjct: 45 TYHTAGASMGTPGQAGKLLYVMHNSEYPLSTFALFENG-------PC-------LVADLN 90
Query: 62 FDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
D+LM+K+ + + K K+E++G R++ DF VK+G+V++ Q+ + + VEV
Sbjct: 91 LDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTVTVGQSGRGITVEV 142
>sp|Q9N5A1|MED20_CAEEL Mediator of RNA polymerase II transcription subunit 20
OS=Caenorhabditis elegans GN=mdt-20 PE=3 SV=2
Length = 198
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 22 VLHNSEQPASVFSILESGVPGGPGGPSGAVKNIP-VVADSLFDLLMMKMTPVYTSKKQTK 80
V+H+S+ P S FSI P K P V D FDL++ K++ + K
Sbjct: 52 VMHHSKCPQSTFSIC----------PKDTFKKSPKAVCDRGFDLILSKLSSGLIADNAGK 101
Query: 81 VESKGPRFEL-GDFCVKLGSVSISQNFKAVLVEVR 114
+E G + L D+ +++G+ + K V+VE+
Sbjct: 102 IEIIGNEYSLYKDWMIRVGTATQGTTVKGVVVEIE 136
>sp|Q61A42|MED20_CAEBR Mediator of RNA polymerase II transcription subunit 20
OS=Caenorhabditis briggsae GN=mdt-20 PE=3 SV=1
Length = 198
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 22 VLHNSEQPASVFSILESGVPGGPGGPSGAVKNIP-VVADSLFDLLMMKMTPVYTSKKQTK 80
V+H+S+ P S FSI P + P V D FDL++ K+ K
Sbjct: 52 VMHHSKCPQSTFSIC----------PKTDFRVSPKAVCDRGFDLILGKLAGGLVIDNAGK 101
Query: 81 VESKGPRFEL-GDFCVKLGSVSISQNFKAVLVEVR 114
+E G + + D+ V++G+ + K V+VEV
Sbjct: 102 IEINGNEYNIHSDWTVRVGTATQGTTVKGVVVEVE 136
>sp|Q54FL3|MED20_DICDI Putative mediator of RNA polymerase II transcription subunit 20
OS=Dictyostelium discoideum GN=med20 PE=3 SV=1
Length = 195
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 76 KKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
KK+ E+ ++ELGDF +++G + + +LVEV
Sbjct: 91 KKRQTTEALISKYELGDFIIRVGPIVFRTEIRGILVEV 128
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1
PE=2 SV=1
Length = 414
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYT 74
GS KTV+++HN ESG G G K+I A S F + + K P+Y
Sbjct: 161 GSPKTVYLVHN---------FTESG--GVAMGMYNQDKSIEDFAHSSFQMALSKNWPLYL 209
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 210 STKNTILKKYDGRFK 224
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1
PE=2 SV=1
Length = 414
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 15 GSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYT 74
GS KTV+++HN ESG G G K+I A S F + + K P+Y
Sbjct: 161 GSPKTVYLVHN---------FTESG--GVAMGMFNQDKSIEDFAHSSFQMALSKNWPLYL 209
Query: 75 SKKQTKVESKGPRFE 89
S K T ++ RF+
Sbjct: 210 STKNTILKKYDGRFK 224
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3
SV=1
Length = 1108
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 17 QKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSK 76
QK ++VL NS + F I S N PV + L++ + P+Y S
Sbjct: 933 QKQIYVLFNSTSQSCKFEI------------SFNKGNFPVTLTPIIGELLIPIVPIYESI 980
Query: 77 KQTKVESK--------GPRFELGDFCV 95
Q K E + +FE GD C+
Sbjct: 981 SQWKDEFEEVGEFKQVDDQFEFGDQCL 1007
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 23 LHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLF 62
HN P+S+ IL G+PGG G G ++ V+ +L
Sbjct: 292 CHNKAGPSSLVDILPQGLPGGGYGSMGVIRKRSAVSSALM 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,042,734
Number of Sequences: 539616
Number of extensions: 1881028
Number of successful extensions: 4830
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4802
Number of HSP's gapped (non-prelim): 26
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)