Query psy8505
Match_columns 118
No_of_seqs 74 out of 76
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 20:40:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8505.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8505hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubq1 b.40.4.5 (Q:2-101) Rib 49.6 8.3 0.0006 24.9 3.6 61 52-115 16-77 (100)
2 d2gy9q1 b.40.4.5 (Q:5-82) Ribo 39.1 13 0.00098 22.7 3.2 63 52-117 14-77 (78)
3 d1vqoa2 b.40.4.5 (A:1-90) N-te 34.5 13 0.00092 23.5 2.6 16 103-118 35-50 (90)
4 d1p88a_ d.68.2.2 (A:) 5-enol-p 31.8 14 0.001 23.9 2.6 38 58-95 173-215 (216)
5 d1ig3a1 b.82.6.1 (A:179-263) T 29.0 10 0.00076 23.3 1.4 26 79-104 35-61 (85)
6 d1utya_ b.147.1.1 (A:) Nonstru 24.5 15 0.0011 25.7 1.6 22 93-114 28-54 (153)
7 d2vv5a1 b.38.1.3 (A:113-179) M 23.1 13 0.00097 21.4 1.0 20 88-114 18-37 (67)
8 d2hqxa1 b.34.9.1 (A:8-97) P100 20.4 20 0.0015 21.6 1.5 18 60-77 1-18 (90)
9 d2a7ya1 b.34.6.3 (A:1-80) Hypo 17.9 9.5 0.00069 24.1 -0.6 25 89-113 4-28 (80)
10 d1eqwa_ b.1.8.1 (A:) Cu,Zn sup 17.7 44 0.0032 22.2 3.0 19 97-115 19-37 (155)
No 1
>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]}
Probab=49.64 E-value=8.3 Score=24.89 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=35.3
Q ss_pred eeeeeeecchHHHHHHhcccceeeccceEEEEccceeEeCCeEEEEeee-EecCcccEEEEEEEE
Q psy8505 52 KNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSV-SISQNFKAVLVEVRT 115 (118)
Q Consensus 52 k~~~l~aD~~fd~im~kL~s~y~~r~~~kie~~G~~YelGDF~VrvG~V-t~~~~~rGilvEVEY 115 (118)
|++.+..+...- -.+.+-.++.++.-.+--+...-++|| .|+|... -.+-+.+++++||=-
T Consensus 16 KTv~V~v~r~~~--h~ky~K~~~r~kk~~vHD~~n~~k~GD-~V~I~e~rPlSK~K~~~v~~Iv~ 77 (100)
T d2uubq1 16 KTVTVLVERQFP--HPLYGKVIKRSKKYLAHDPEEKYKLGD-VVEIIESRPISKRKRFRVLRLVE 77 (100)
T ss_dssp TEEEEEEEEEEE--ETTTEEEEEEEEEEEEECTTCCCCTTC-EEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcEEEEEEEEEe--ccccCEEEEeeEEEEEECCCCCCCCCC-EEEEEECcCCCCceEEEEEEEEe
Confidence 677776666541 123333233333222333455566788 5666666 556799999999843
No 2
>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
Probab=39.09 E-value=13 Score=22.67 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=37.9
Q ss_pred eeeeeeecchHHHHHHhcccceeeccceEEEEccceeEeCCeEEEEeee-EecCcccEEEEEEEEeC
Q psy8505 52 KNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSV-SISQNFKAVLVEVRTSK 117 (118)
Q Consensus 52 k~~~l~aD~~fd~im~kL~s~y~~r~~~kie~~G~~YelGDF~VrvG~V-t~~~~~rGilvEVEY~~ 117 (118)
|++.+..+..+- ..+.+-.++.++.-.+--+....++|| .|++... -.+-+.+++++||--.|
T Consensus 14 KTv~V~v~r~~~--h~ky~K~~~~~kky~aHDe~~~~~~GD-~V~I~e~rPlSK~K~~~v~~iv~ka 77 (78)
T d2gy9q1 14 KSIVVAIERFVK--HPIYGKFIKRTTKLHVHDENNECGIGD-VVEIRECRPLSKTKSWTLVRVVEKA 77 (78)
T ss_dssp SEEEEEEEEEEE--CSSSCCEEEEEEEEEEECTTCCCCTTC-EEEEEECSCSSSSCCEEEEEEEESC
T ss_pred CcEEEEEEEEEE--cCccCEEEEeeEEEEEECCCCCCcccc-EEEEEEcCcCCCcEEEEEEEEEecc
Confidence 677777776542 233444333333333444555677888 4666666 45569999999997543
No 3
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=34.47 E-value=13 Score=23.46 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.5
Q ss_pred cCcccEEEEEEEEeCC
Q psy8505 103 SQNFKAVLVEVRTSKG 118 (118)
Q Consensus 103 ~~~~rGilvEVEY~~~ 118 (118)
...++|.++++||.++
T Consensus 35 ~~~i~g~V~~IeyDP~ 50 (90)
T d1vqoa2 35 GDVIAGTVVDIEHDPA 50 (90)
T ss_dssp SCCCEEEEEEEEEETT
T ss_pred cCcccEEEEEEEecCC
Confidence 4568999999999985
No 4
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=31.85 E-value=14 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=23.1
Q ss_pred ecchHHHHHHhccc---ceeeccceEEEEccc-eeEe-CCeEE
Q psy8505 58 ADSLFDLLMMKMTP---VYTSKKQTKVESKGP-RFEL-GDFCV 95 (118)
Q Consensus 58 aD~~fd~im~kL~s---~y~~r~~~kie~~G~-~Yel-GDF~V 95 (118)
.....|++...|+. .........++++|. +|+. |||.|
T Consensus 173 s~~~v~~t~~~L~~~Ga~I~~~~~~~i~I~G~~~~~~p~dy~v 215 (216)
T d1p88a_ 173 SKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLV 215 (216)
T ss_dssp CHHHHHHHHHHHHTTTCCEEECSSSCEEECSSCCEECCSEEEC
T ss_pred CCccHHHHHHHHHHCCCeEEecCCCEEEEcCCCcccCCceEEe
Confidence 33445665544544 344444455888876 5887 89876
No 5
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.95 E-value=10 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=21.3
Q ss_pred eEEEEccceeEeCCeEEEEeee-EecC
Q psy8505 79 TKVESKGPRFELGDFCVKLGSV-SISQ 104 (118)
Q Consensus 79 ~kie~~G~~YelGDF~VrvG~V-t~~~ 104 (118)
..+..+|.+|.|-|+.+++|.- +.+.
T Consensus 35 ~~vt~~Glky~L~~~~l~~g~~~s~SN 61 (85)
T d1ig3a1 35 NQVTTTGLKWNLTNDVLGFGTLVSTSN 61 (85)
T ss_dssp EEEEEESBSSCCSSEEEBTTTBCEEEE
T ss_pred eeEEEeCCEEeCCCCEEECCCccCcce
Confidence 3589999999999999999876 4443
No 6
>d1utya_ b.147.1.1 (A:) Nonstructural protein NS2 {Bluetongue virus [TaxId: 40051]}
Probab=24.51 E-value=15 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=16.4
Q ss_pred eEEEEeee-----EecCcccEEEEEEE
Q psy8505 93 FCVKLGSV-----SISQNFKAVLVEVR 114 (118)
Q Consensus 93 F~VrvG~V-----t~~~~~rGilvEVE 114 (118)
+.||+|.. ...+..||.++||.
T Consensus 28 ~~vKiGr~~~~~~v~~P~Pk~yVleI~ 54 (153)
T d1utya_ 28 CQIKIGRVVAFKPVKNPEPKGYVLNVP 54 (153)
T ss_dssp EEEEESSSCEEEEESSCCTTCEEEECS
T ss_pred EEEEeccEEEeeecCCCCCCeEEEEec
Confidence 46777765 34489999999984
No 7
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=23.07 E-value=13 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.684 Sum_probs=11.9
Q ss_pred eEeCCeEEEEeeeEecCcccEEEEEEE
Q psy8505 88 FELGDFCVKLGSVSISQNFKAVLVEVR 114 (118)
Q Consensus 88 YelGDF~VrvG~Vt~~~~~rGilvEVE 114 (118)
|++|||+ +++ ...|.+.|+-
T Consensus 18 f~vGD~I-~i~------~~~G~V~~I~ 37 (67)
T d2vv5a1 18 FRAGEYV-DLG------GVAGTVLSVQ 37 (67)
T ss_dssp SCTTCEE-ESS------SCEEEEEEEC
T ss_pred ccCCCEE-EEC------CEEEEEEEEe
Confidence 6778873 443 3456666654
No 8
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=20 Score=21.56 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=13.1
Q ss_pred chHHHHHHhcccceeecc
Q psy8505 60 SLFDLLMMKMTPVYTSKK 77 (118)
Q Consensus 60 ~~fd~im~kL~s~y~~r~ 77 (118)
+.|+.+|+.|+..|.+..
T Consensus 1 sqle~Lm~~l~~~~~~~~ 18 (90)
T d2hqxa1 1 TQFQKLMENMRNDIASHP 18 (90)
T ss_dssp CHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHhcCC
Confidence 358889999988665543
No 9
>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.94 E-value=9.5 Score=24.10 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=15.2
Q ss_pred EeCCeEEEEeeeEecCcccEEEEEE
Q psy8505 89 ELGDFCVKLGSVSISQNFKAVLVEV 113 (118)
Q Consensus 89 elGDF~VrvG~Vt~~~~~rGilvEV 113 (118)
.+||++|-=|...-...-.|.|+||
T Consensus 4 ~vGDrLvV~g~~vg~~~r~GeIvEV 28 (80)
T d2a7ya1 4 KVGDYLVVKGTTTERHDQHAEIIEV 28 (80)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEEC
T ss_pred ccCCEEEEecCcCCCCcceeEEEEE
Confidence 3567776666544344566777776
No 10
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]}
Probab=17.69 E-value=44 Score=22.25 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=15.9
Q ss_pred EeeeEecCcccEEEEEEEE
Q psy8505 97 LGSVSISQNFKAVLVEVRT 115 (118)
Q Consensus 97 vG~Vt~~~~~rGilvEVEY 115 (118)
+|+|+..|...|+.|+++-
T Consensus 19 ~G~v~f~q~~~gv~I~~~l 37 (155)
T d1eqwa_ 19 IGEITVSETPYGLLFTPHL 37 (155)
T ss_dssp EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEEE
Confidence 5999888888899998863
Done!