Your job contains 1 sequence.
>psy8505
MFTYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADS
LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8505
(118 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0013531 - symbol:MED20 "Mediator complex subunit 2... 263 1.0e-22 1
UNIPROTKB|B7ZBQ3 - symbol:MED20 "Mediator of RNA polymera... 160 8.2e-12 1
UNIPROTKB|A6H7I4 - symbol:MED20 "MED20 protein" species:9... 156 2.2e-11 1
UNIPROTKB|F1PC21 - symbol:MED20 "Uncharacterized protein"... 155 2.8e-11 1
UNIPROTKB|A6PVP4 - symbol:MED20 "Mediator of RNA polymera... 155 2.8e-11 1
UNIPROTKB|Q9H944 - symbol:MED20 "Mediator of RNA polymera... 155 2.8e-11 1
MGI|MGI:1929648 - symbol:Med20 "mediator complex subunit ... 155 2.8e-11 1
RGD|1306415 - symbol:Med20 "mediator complex subunit 20" ... 155 2.8e-11 1
UNIPROTKB|F1LN44 - symbol:LOC100360472 "Protein LOC100360... 155 2.8e-11 1
UNIPROTKB|Q5ZKY9 - symbol:MED20 "Mediator of RNA polymera... 150 9.4e-11 1
ZFIN|ZDB-GENE-040801-104 - symbol:med20 "mediator complex... 143 5.2e-10 1
UNIPROTKB|B4DE08 - symbol:MED20 "cDNA FLJ53711, highly si... 109 2.1e-06 1
>FB|FBgn0013531 [details] [associations]
symbol:MED20 "Mediator complex subunit 20" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA;ISS] [GO:0016592
"mediator complex" evidence=ISS;IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISS;NAS] InterPro:IPR013921 Pfam:PF08612 EMBL:AE014134
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 KO:K13528
eggNOG:NOG268717 GeneTree:ENSGT00390000002060 CTD:9477 OMA:KSHFQNA
EMBL:Y10975 EMBL:BT003473 RefSeq:NP_524663.2 UniGene:Dm.1877
DIP:DIP-21881N IntAct:P91641 MINT:MINT-742218 STRING:P91641
PaxDb:P91641 EnsemblMetazoa:FBtr0079544 GeneID:43952
KEGG:dme:Dmel_CG18780 FlyBase:FBgn0013531 InParanoid:P91641
OrthoDB:EOG463XTW PhylomeDB:P91641 GenomeRNAi:43952 NextBio:836450
Bgee:P91641 GermOnline:CG18780 Uniprot:P91641
Length = 252
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 53/102 (51%), Positives = 73/102 (71%)
Query: 13 HLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTP 71
H G+ + VHVLHNSE PAS FSI++ K + +VAD++FDLLM+KMT
Sbjct: 53 HNGAPGRAVHVLHNSEYPASTFSIIDNGTG----------KQVAIVADNIFDLLMLKMTN 102
Query: 72 VYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
+TSKKQTK+ES+G RFE GDF +KLGSV++ ++FK +L+E+
Sbjct: 103 TFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEI 144
>UNIPROTKB|B7ZBQ3 [details] [associations]
symbol:MED20 "Mediator of RNA polymerase II transcription
subunit 20" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR013921 Pfam:PF08612
GO:GO:0016592 GO:GO:0001104 EMBL:AL160163 HOGENOM:HOG000290707
HOVERGEN:HBG106543 HGNC:HGNC:16840 ChiTaRS:MED20 IPI:IPI00916936
STRING:B7ZBQ3 Ensembl:ENST00000409060 Uniprot:B7ZBQ3
Length = 145
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 39/114 (34%), Positives = 64/114 (56%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEVR
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVR 143
>UNIPROTKB|A6H7I4 [details] [associations]
symbol:MED20 "MED20 protein" species:9913 "Bos taurus"
[GO:0016592 "mediator complex" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR013921 Pfam:PF08612 GO:GO:0016592 GO:GO:0001104
KO:K13528 eggNOG:NOG268717 GeneTree:ENSGT00390000002060 CTD:9477
HOGENOM:HOG000290707 HOVERGEN:HBG106543 OMA:KSHFQNA
OrthoDB:EOG41C6X6 EMBL:DAAA02055061 EMBL:DAAA02055062 EMBL:BC146258
IPI:IPI00868625 RefSeq:NP_001096763.1 UniGene:Bt.11273
STRING:A6H7I4 Ensembl:ENSBTAT00000013323 GeneID:540294
KEGG:bta:540294 InParanoid:A6H7I4 NextBio:20878544 Uniprot:A6H7I4
Length = 212
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 39/113 (34%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P +VAD+
Sbjct: 45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLVADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142
>UNIPROTKB|F1PC21 [details] [associations]
symbol:MED20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR013921 Pfam:PF08612 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00390000002060 OMA:KSHFQNA
EMBL:AAEX03008323 EMBL:AAEX03008324 Ensembl:ENSCAFT00000002529
Uniprot:F1PC21
Length = 212
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142
>UNIPROTKB|A6PVP4 [details] [associations]
symbol:MED20 "Mediator of RNA polymerase II transcription
subunit 20" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR013921 Pfam:PF08612
GO:GO:0016592 GO:GO:0001104 EMBL:AL160163 HOGENOM:HOG000290707
HOVERGEN:HBG106543 UniGene:Hs.278434 HGNC:HGNC:16840 ChiTaRS:MED20
IPI:IPI00853365 STRING:A6PVP4 Ensembl:ENST00000394251
Uniprot:A6PVP4
Length = 140
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 37 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 81
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 82 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 134
>UNIPROTKB|Q9H944 [details] [associations]
symbol:MED20 "Mediator of RNA polymerase II transcription
subunit 20" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=NAS] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=NAS] [GO:0006351 "transcription,
DNA-dependent" evidence=NAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 InterPro:IPR013921
Pfam:PF08612 Reactome:REACT_111045 GO:GO:0006357 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 EMBL:AL160163 GO:GO:0003899 KO:K13528
eggNOG:NOG268717 CTD:9477 HOGENOM:HOG000290707 HOVERGEN:HBG106543
OMA:KSHFQNA OrthoDB:EOG41C6X6 EMBL:AF097725 EMBL:AK023092
EMBL:BC012618 EMBL:BC019866 EMBL:BC032552 EMBL:BC040950
EMBL:AL050196 IPI:IPI00174852 PIR:T08801 RefSeq:NP_004266.2
UniGene:Hs.278434 ProteinModelPortal:Q9H944 IntAct:Q9H944
MINT:MINT-275845 STRING:Q9H944 PhosphoSite:Q9H944 DMDM:29428258
PaxDb:Q9H944 PeptideAtlas:Q9H944 PRIDE:Q9H944 DNASU:9477
Ensembl:ENST00000265350 GeneID:9477 KEGG:hsa:9477 UCSC:uc003orj.3
GeneCards:GC06M041877 HGNC:HGNC:16840 HPA:HPA040717 MIM:612915
neXtProt:NX_Q9H944 PharmGKB:PA162395472 InParanoid:Q9H944
ChiTaRS:MED20 GenomeRNAi:9477 NextBio:35516 ArrayExpress:Q9H944
Bgee:Q9H944 CleanEx:HS_MED20 Genevestigator:Q9H944
GermOnline:ENSG00000124641 Uniprot:Q9H944
Length = 212
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142
>MGI|MGI:1929648 [details] [associations]
symbol:Med20 "mediator complex subunit 20" species:10090
"Mus musculus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0035914 "skeletal muscle cell differentiation"
evidence=IMP] InterPro:IPR013921 Pfam:PF08612 MGI:MGI:1929648
Reactome:REACT_127416 GO:GO:0035914 Reactome:REACT_27166
GO:GO:0016592 GO:GO:0001104 eggNOG:COG5533 KO:K13528
GeneTree:ENSGT00390000002060 CTD:9477 HOGENOM:HOG000290707
HOVERGEN:HBG106543 OMA:KSHFQNA EMBL:AJ245617 EMBL:AK019130
EMBL:AK043396 EMBL:AK146345 EMBL:BC060122 IPI:IPI00128183
IPI:IPI00652621 IPI:IPI00869387 RefSeq:NP_064432.1
UniGene:Mm.440560 UniGene:Mm.59393 ProteinModelPortal:Q9R0X0
IntAct:Q9R0X0 STRING:Q9R0X0 PhosphoSite:Q9R0X0 PRIDE:Q9R0X0
Ensembl:ENSMUST00000024778 GeneID:56771 KEGG:mmu:56771
UCSC:uc008cvr.1 UCSC:uc008cvs.1 InParanoid:Q9R0X0 NextBio:313294
Bgee:Q9R0X0 CleanEx:MM_MED20 Genevestigator:Q9R0X0
GermOnline:ENSMUSG00000073387 Uniprot:Q9R0X0
Length = 212
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142
>RGD|1306415 [details] [associations]
symbol:Med20 "mediator complex subunit 20" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] InterPro:IPR013921 Pfam:PF08612
RGD:1306415 GO:GO:0016592 GO:GO:0001104 KO:K13528 eggNOG:NOG268717
CTD:9477 HOGENOM:HOG000290707 HOVERGEN:HBG106543 OrthoDB:EOG41C6X6
EMBL:BC083734 IPI:IPI00371729 RefSeq:NP_001013196.1
UniGene:Rn.231768 STRING:Q5XIE9 PhosphoSite:Q5XIE9 GeneID:316209
KEGG:rno:316209 UCSC:RGD:1306415 InParanoid:Q5XIE9 NextBio:670528
ArrayExpress:Q5XIE9 Genevestigator:Q5XIE9 Uniprot:Q5XIE9
Length = 212
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142
>UNIPROTKB|F1LN44 [details] [associations]
symbol:LOC100360472 "Protein LOC100360472" species:10116
"Rattus norvegicus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR013921 Pfam:PF08612 RGD:2322084
GO:GO:0016592 GO:GO:0001104 GeneTree:ENSGT00390000002060
OMA:KSHFQNA IPI:IPI00957266 Ensembl:ENSRNOT00000018523
ArrayExpress:F1LN44 Uniprot:F1LN44
Length = 211
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 44 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 88
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD+LM+K+ + S K +K+E++G R++ DF VK+G+V++ + + + VEV
Sbjct: 89 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 141
>UNIPROTKB|Q5ZKY9 [details] [associations]
symbol:MED20 "Mediator of RNA polymerase II transcription
subunit 20" species:9031 "Gallus gallus" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] InterPro:IPR013921
Pfam:PF08612 GO:GO:0016592 GO:GO:0001104 KO:K13528 eggNOG:NOG268717
GeneTree:ENSGT00390000002060 EMBL:AJ719945 IPI:IPI00587649
RefSeq:NP_001006327.1 UniGene:Gga.7432 STRING:Q5ZKY9
Ensembl:ENSGALT00000005500 GeneID:419926 KEGG:gga:419926 CTD:9477
HOGENOM:HOG000290707 HOVERGEN:HBG106543 InParanoid:Q5ZKY9
OMA:KSHFQNA OrthoDB:EOG41C6X6 NextBio:20822913 Uniprot:Q5ZKY9
Length = 211
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 3 TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADSL 61
TYH + + K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAAAISSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADAN 89
Query: 62 FDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
FD LM+K+ + + K K+ES+G R++ DF VK+G+V++ + + + VEV
Sbjct: 90 FDTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTVTMGPSARGISVEV 141
>ZFIN|ZDB-GENE-040801-104 [details] [associations]
symbol:med20 "mediator complex subunit 20"
species:7955 "Danio rerio" [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR013921 Pfam:PF08612
ZFIN:ZDB-GENE-040801-104 GO:GO:0016592 GO:GO:0001104 KO:K13528
eggNOG:NOG268717 GeneTree:ENSGT00390000002060 CTD:9477
HOGENOM:HOG000290707 HOVERGEN:HBG106543 OMA:KSHFQNA
OrthoDB:EOG41C6X6 EMBL:AL645789 EMBL:BC078327 IPI:IPI00502754
RefSeq:NP_001003585.1 UniGene:Dr.77031 STRING:Q6DBX1 PRIDE:Q6DBX1
Ensembl:ENSDART00000067638 GeneID:445191 KEGG:dre:445191
InParanoid:Q1MTK2 NextBio:20831952 ArrayExpress:Q6DBX1 Bgee:Q6DBX1
Uniprot:Q6DBX1
Length = 212
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 40/111 (36%), Positives = 60/111 (54%)
Query: 3 TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLF 62
TYHA TG S K ++V+HNSE P S ++ E AD+ F
Sbjct: 45 TYHA-TGNATGQPS-KLLYVMHNSEAPLSCMALFEGGPGLS--------------ADANF 88
Query: 63 DLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
D+LM+K+ + + K KVES+G R+ DF VK+G+V++S + + + VEV
Sbjct: 89 DVLMIKLKSHFQNAKGHKVESRGTRYRYCDFLVKIGTVAMSSSARGISVEV 139
>UNIPROTKB|B4DE08 [details] [associations]
symbol:MED20 "cDNA FLJ53711, highly similar to TRF-proximal
protein homolog" species:9606 "Homo sapiens" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] InterPro:IPR013921
Pfam:PF08612 GO:GO:0016592 GO:GO:0001104 EMBL:AL160163
HOGENOM:HOG000290707 HOVERGEN:HBG106543 UniGene:Hs.278434
HGNC:HGNC:16840 ChiTaRS:MED20 EMBL:AK293412 IPI:IPI00917086
STRING:B4DE08 Ensembl:ENST00000409312 UCSC:uc011duh.2
Uniprot:B4DE08
Length = 123
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
TYH G K ++V+HNSE P S F++ E N P ++AD+
Sbjct: 45 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89
Query: 61 LFDLLMMKMTPVYTSKKQTKVESKGPRFEL 90
FD+LM+K+ + S K +K+E++G R+ +
Sbjct: 90 NFDVLMVKLKGFFQSAKASKIETRGTRWSM 119
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 118 106 0.00091 102 3 11 22 0.41 30
29 0.39 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 522 (56 KB)
Total size of DFA: 98 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.72u 0.14s 8.86t Elapsed: 00:00:00
Total cpu time: 8.72u 0.14s 8.86t Elapsed: 00:00:00
Start: Thu Aug 15 17:01:49 2013 End: Thu Aug 15 17:01:49 2013