RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8505
(118 letters)
>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel,
channel, transcription; 2.40A {Saccharomyces cerevisiae}
PDB: 3rj1_F 2hzs_A
Length = 212
Score = 33.3 bits (75), Expect = 0.009
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 57 VADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
V +S+ +L K++ ++ ++ K ++ G L V+L ++ S FK +L+E+
Sbjct: 102 VPESIDTILSSKLSNIWMQRQLIKGDA-GETLILDGLTVRLVNLFSSTGFKGLLIEL 157
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics,
PSI-2, protein structure initiative, no structural
genomics consortium; HET: TPP; 2.79A {Enterococcus
faecalis}
Length = 222
Score = 27.0 bits (59), Expect = 1.3
Identities = 5/40 (12%), Positives = 11/40 (27%)
Query: 79 TKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG 118
+ + ++ L + V + S F G
Sbjct: 165 ENLTLRRSKYLLTNQDVPYPTSYASNEFIEEAAAFSFDAG 204
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase,
thiamine pyrophosphokinase, NESG, LPR114, structural
genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Length = 227
Score = 25.9 bits (56), Expect = 3.7
Identities = 4/41 (9%), Positives = 8/41 (19%)
Query: 78 QTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG 118
+ +++L S F G
Sbjct: 164 PMHLTLPDEKYQLDAAYNAYPISWASNEFSGNTGHFSFDAG 204
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 25.8 bits (56), Expect = 4.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 9 GRYAHLGSQKTVHV 22
GRY +G Q+T++V
Sbjct: 543 GRYWEIGPQQTLYV 556
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics,
joint center FO structural genomics, JCSG; HET: MSE;
1.06A {Chromobacterium violaceum}
Length = 198
Score = 25.3 bits (56), Expect = 5.4
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 20 VHVLHNSEQPASVFSILESGVPGGPGG 46
+H+ H+S +P S + PG PG
Sbjct: 56 IHIRHDSVEPNSTY------RPGQPGH 76
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 25.3 bits (56), Expect = 6.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 8 TGRYAHLGSQKTVHVLHN 25
+GR H S +T HV N
Sbjct: 129 SGRRTHPASGRTYHVKFN 146
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 24.8 bits (55), Expect = 6.5
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 8 TGRYAHLGSQKTVHVLHN 25
GR H S + HV N
Sbjct: 121 VGRRVHAPSGRVYHVKFN 138
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 24.9 bits (55), Expect = 8.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 8 TGRYAHLGSQKTVHVLHN 25
+GR H S + H + N
Sbjct: 154 SGRLIHKPSGRIYHKIFN 171
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 24.8 bits (55), Expect = 8.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 8 TGRYAHLGSQKTVHVLHN 25
TGR H S ++ H + N
Sbjct: 130 TGRLIHPASGRSYHKIFN 147
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 24.9 bits (55), Expect = 8.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 8 TGRYAHLGSQKTVHVLHN 25
TGR H S ++ H N
Sbjct: 141 TGRLIHPQSGRSYHEEFN 158
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 24.8 bits (55), Expect = 8.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 8 TGRYAHLGSQKTVHVLHN 25
+GR H S + HV +N
Sbjct: 130 SGRCTHPASGRIYHVKYN 147
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 24.6 bits (54), Expect = 9.5
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 35 ILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTP 71
+ + P A F L+M+ TP
Sbjct: 269 VFDFIPNSDRITPPDAA---------AFSLVMLATTP 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.382
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,667,964
Number of extensions: 87012
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 24
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)