RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8505
         (118 letters)



>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central
          domain {Trypanosoma brucei [TaxId: 5691]}
          Length = 132

 Score = 24.2 bits (52), Expect = 3.9
 Identities = 6/40 (15%), Positives = 9/40 (22%)

Query: 35 ILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYT 74
           +  G+   PG   G V      A          +     
Sbjct: 13 PIGRGLAASPGAAVGQVVFDAESAKEWSGRGKKVIMVRLE 52


>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain
          N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
          Length = 120

 Score = 23.6 bits (51), Expect = 6.2
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 4  YHAGTGRYAHLGSQKTVHV 22
          +H   G YA+  S+  + V
Sbjct: 7  FHEAKGSYAYPISETQLRV 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,176
Number of extensions: 15250
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)