BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8506
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain
In The Carboxyl-terminus Of The Copi Gamma-subunit
Length = 322
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F H++ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 85 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 144
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 145 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 201
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage
Domain
Length = 275
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 38 VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPAR 97
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 98 SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 154
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 24 IKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIIL 83
I S +++++ E +NTL+ +LLE ++ P+ + P+P N +++ IL
Sbjct: 98 IPDSLRANILAYYEKANTLASELLE--WIETYSPDEIKAKFSIPLPEXIANSHKTLLRIL 155
Query: 84 QYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDE 118
YPP D GA+ + +D + T P ++E
Sbjct: 156 HYPPXTGDE--EXGAIRAAAHEDINLITVLPTANE 188
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 79 VYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSD 117
Y + Q+P S D+ S C PTTG+PD D
Sbjct: 11 FYFVQQWPASYCDTRRSC----------CYPTTGKPDED 39
>pdb|2ZOE|A Chain A, Ha3 Subcomponent Of Clostridium Botulinum Type C
Progenitor Toxin, Complex With N-Acetylneuramic Acid
Length = 205
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 45 QLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVT 94
+ N T EIP G+E K P + Y Q YI + L ++VT
Sbjct: 107 NVFANFTEASEIPIGFEFSKTAPSNKSLYXYLQYTYIRYEIIKVLQNTVT 156
>pdb|2ZS6|A Chain A, Ha3 Subcomponent Of Botulinum Type C Progenitor Toxin
Length = 205
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 45 QLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVT 94
+ N T EIP G+E K P + Y Q YI + L ++VT
Sbjct: 107 NVFANFTEASEIPIGFEFSKTAPSNKSLYMYLQYTYIRYEIIKVLQNTVT 156
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 32 LILQLEVSNTLSDQLLENVTVQLEIPEG 59
L L + N ++ L+EN + QL+ PEG
Sbjct: 86 LALSISSDNLVNKYLIENFSAQLQNPEG 113
>pdb|4EN6|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactose
pdb|4EN7|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactosamine
pdb|4EN8|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactose
pdb|4EN9|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactosamine
Length = 224
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 45 QLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVT 94
+ N T EIP G+E K P + Y Q YI + L ++VT
Sbjct: 107 NVFANFTEASEIPIGFEFSKTAPSNKSLYMYLQYTYIRYEIIKVLQNTVT 156
>pdb|3QVU|A Chain A, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And P-Nitrophenol
pdb|3QVU|B Chain B, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And P-Nitrophenol
pdb|3QVV|A Chain A, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And 3-Cyc
pdb|3QVV|B Chain B, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And 3-Cyc
Length = 295
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 89 IPSGMETLKDTPAPRL 104
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 73 YNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDE 123
+N +++ I Y P +A+ ++ +G F + DP+T P +G DD+
Sbjct: 42 FNFPRTLKPISYYKPPMANILSKLG----FGTRSPDPSTMDPTIPQGPDDD 88
>pdb|1LS6|A Chain A, Human Sult1a1 Complexed With Pap And P-Nitrophenol
pdb|2D06|A Chain A, Human Sult1a1 Complexed With Pap And Estradiol
pdb|2D06|B Chain B, Human Sult1a1 Complexed With Pap And Estradiol
Length = 295
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 89 IPSGMETLKDTPAPRL 104
>pdb|3U3J|A Chain A, Crystal Structure Of Hsult1a1 Bound To Pap
pdb|3U3J|B Chain B, Crystal Structure Of Hsult1a1 Bound To Pap
Length = 314
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 109 IPSGMETLKDTPAPRL 124
>pdb|1Z28|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 89 IPSGMETLKDTPAPRL 104
>pdb|3U3K|A Chain A, Crystal Structure Of Hsult1a1 Bound To Pap And 2-Naphtol
pdb|3U3K|B Chain B, Crystal Structure Of Hsult1a1 Bound To Pap And 2-Naphtol
pdb|3U3M|A Chain A, Crystal Structure Of Human Sult1a1 Bound To Pap And
3-Cyano-7- Hydroxycoumarin
pdb|3U3O|A Chain A, Crystal Structure Of Human Sult1a1 Bound To Pap And Two
3-Cyano-7- Hydroxycoumarin
Length = 315
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 109 IPSGMETLKDTPAPRL 124
>pdb|4GRA|A Chain A, Crystal Structure Of Sult1a1 Bound With Pap
pdb|4GRA|B Chain B, Crystal Structure Of Sult1a1 Bound With Pap
Length = 299
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 93 IPSGMETLKDTPAPRL 108
>pdb|3U3R|A Chain A, Crystal Structure Of D249g Mutated Human Sult1a1 Bound To
Pap And P- Nitrophenol
Length = 315
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K+TP PRL
Sbjct: 109 IPSGMETLKDTPAPRL 124
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 43 SDQLLENVTVQLEIPEG 59
SD ++NVT++L++PEG
Sbjct: 23 SDMEIKNVTIKLKVPEG 39
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 79 VYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEG 119
Y + Q+P S D+ S C PTTG+P +D G
Sbjct: 10 FYFVQQWPGSYCDTKQSC----------CYPTTGKPAADFG 40
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 55 EIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSV 96
E+P+ +LI + P+P+ YN T+ I L++ ++ADS SV
Sbjct: 9 EVPK-EDLIWQDPLPQPIYNPTEQDIIDLKF--AIADSGLSV 47
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
Length = 326
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 55 EIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSV 96
E+P+ +LI + P+P+ YN T+ I L++ ++ADS SV
Sbjct: 26 EVPK-EDLIWQDPLPQPIYNPTEQDIIDLKF--AIADSGLSV 64
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 28 FQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPP 87
FQSH++L+ T +QL+ +L IP Y+ I I E S +
Sbjct: 12 FQSHMLLKPLQVYTADNQLIAEYGGKLSIPVEYKQIPPNFIHAFLAAEDSSFF------E 65
Query: 88 SLADSVTSVGAVLKFSVKDCDPTTG 112
S +G L SV D TG
Sbjct: 66 HSGISFKGLGRALSESVTGSDVQTG 90
>pdb|1Z29|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 56 IPEGYELIKETPIPRL 71
IP G E +K TP PRL
Sbjct: 89 IPSGMETLKNTPAPRL 104
>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393
Length = 442
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 23 CIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRLAYNETQSVYII 82
++ F+ H++L + SD+ E + Y +K + + NE ++ +
Sbjct: 340 VVRLQFKDHIVLTVLPDQDQSDETQEKMVYI------YHSLKNSRETHMMGNEEETEFHG 393
Query: 83 LQYPPSLADSVTSVGAVLKFSVKDCDPTT 111
L++P S D++ + SVKD TT
Sbjct: 394 LRFPLSHLDALKQIWNSPAISVKDLKLTT 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,646,460
Number of Sequences: 62578
Number of extensions: 124581
Number of successful extensions: 231
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 27
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)