BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8506
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29AE5|COPG_DROPS Coatomer subunit gamma OS=Drosophila pseudoobscura pseudoobscura
GN=gammaCop PE=3 SV=1
Length = 878
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 86/117 (73%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
+ LTESETEY V+CIKH F H++ Q + NTLSDQ LENV V+L +PEG+ P P
Sbjct: 639 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQFLENVRVELTLPEGFTTRAVVPCP 698
Query: 70 RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
+L YNE Q+ Y+I+++PP S+ + GA L+F VKDCDP TG+PDS+EGYDDEYM+
Sbjct: 699 KLPYNELQTTYVIVEFPPDAGSSIATFGATLRFVVKDCDPNTGEPDSEEGYDDEYML 755
>sp|Q8I0G5|COPG_DROME Coatomer subunit gamma OS=Drosophila melanogaster GN=gammaCop PE=2
SV=1
Length = 883
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 89/117 (76%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
+ LTESETEY V+CIKH F H++ Q + NTLSDQ+LENV V+L +PEG+ P P
Sbjct: 644 IQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVIPCP 703
Query: 70 RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
+L YN+ Q+ ++I+++PP A+S+ + GA L+F VKDCDP TG+P+S+EGYDDEYM+
Sbjct: 704 KLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPESEEGYDDEYML 760
>sp|Q7PVF6|COPG_ANOGA Coatomer subunit gamma OS=Anopheles gambiae GN=gammaCop PE=3 SV=2
Length = 868
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 85/117 (72%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEY V CIKH F H++ Q + NTLSDQLLENV V LE+PEG+ P
Sbjct: 639 VQLTESETEYTVSCIKHCFAHHIVFQFDCVNTLSDQLLENVRVDLELPEGFVSRAVIPCA 698
Query: 70 RLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
+L Y + +S Y+I+Q+P + S+ ++GA L+F VKDCDP TGQPDSDEGY+DEY++
Sbjct: 699 KLPYGDKESTYVIVQFPEDVPSSIATLGATLRFLVKDCDPATGQPDSDEGYNDEYIL 755
>sp|P53620|COPG1_BOVIN Coatomer subunit gamma-1 OS=Bos taurus GN=COPG1 PE=1 SV=1
Length = 874
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F H++ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 637 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 696
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 753
>sp|Q9Y678|COPG1_HUMAN Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1
Length = 874
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 637 VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPAR 696
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 753
>sp|Q4AEF8|COPG1_RAT Coatomer subunit gamma-1 OS=Rattus norvegicus GN=Copg1 PE=2 SV=1
Length = 874
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F HL+ Q + +NTL+DQ LENVTVQ+E E YE++ P+
Sbjct: 637 VALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPVR 696
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + V+KF+VKDCDP TG+ D +EGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVL 753
>sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1
Length = 873
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEYVVRCIKH+F H++ Q + +NTL+DQLL+ V VQ+E E YE+I P P
Sbjct: 636 VQLTEAETEYVVRCIKHTFARHMVFQFDCTNTLNDQLLQKVLVQMEPSEAYEVIHYIPAP 695
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L Y++ S Y +++ P +V+ + +K+ V+DCDP TG+PD D+GYDDEY++
Sbjct: 696 SLPYSQPGSCYSLVRLPDDDPTAVSCTFSCTMKYLVRDCDPNTGEPD-DDGYDDEYVL 752
>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1
Length = 871
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEY VRCIKH F +H++ Q + +NTL+DQLLE VTVQ+E + YE++ P P
Sbjct: 634 VQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLSCIPAP 693
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ Y +++ P +V S +KF+V+DCDP TG PD D GYDDEY++
Sbjct: 694 SLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPDED-GYDDEYVL 750
>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1
Length = 871
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 83/120 (69%), Gaps = 6/120 (5%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEY VRC+KH F +H++ Q + +NTL+DQLLE VTVQ+E E YE++ P P
Sbjct: 634 VQLTEAETEYFVRCVKHMFTNHIVFQFDCTNTLNDQLLEKVTVQVEPSEAYEVLCCVPAP 693
Query: 70 RLAYNETQSVYIILQYPPSLADSVTSVGA---VLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ Y +++ P DS+ + G +KF+V+DCDP TG P ++EGYDDEY++
Sbjct: 694 SLPYNQPGVCYTLVRLPED--DSIAAAGTFSCTMKFTVRDCDPDTGVP-TEEGYDDEYVL 750
>sp|Q9QZE5|COPG1_MOUSE Coatomer subunit gamma-1 OS=Mus musculus GN=Copg1 PE=2 SV=1
Length = 874
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F HL+ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 637 VALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLSYVPAR 696
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + V+KF+VKDCDP TG+ D +EGY+DEY++
Sbjct: 697 SLPYNQPGTCYTLVALPTEDPTAVACTFSCVMKFTVKDCDPNTGEID-EEGYEDEYVL 753
>sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1
Length = 872
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEY VRCIKH F +H++ Q + +NTL+DQLLE VTVQ+E E YE++ P P
Sbjct: 635 VQLTEAETEYFVRCIKHVFPNHIVFQFDCTNTLNDQLLEKVTVQMEPSEAYEVVHYVPAP 694
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ Y +++ P +V+ + +KF V+DCDP TG PD DEGY DEY++
Sbjct: 695 SLPYNQPGISYTLVRLPDDDPTAVSCTFSCTMKFVVRDCDPQTGVPD-DEGYSDEYVL 751
>sp|Q6DKD7|COPG2_XENLA Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1
Length = 872
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEY VRCIKH F +H + Q + +NTL+DQLLE VTVQ+E E YE++ P P
Sbjct: 635 VQLTEAETEYFVRCIKHVFPNHFVFQFDCTNTLNDQLLEKVTVQMEPSEAYEVLHYVPAP 694
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ Y ++ P +V+ + +KF V+DCDP TG PD DEGY DEY++
Sbjct: 695 SLTYNQPGICYTLVSLPDDDPTAVSCTFSCTMKFVVRDCDPQTGVPD-DEGYSDEYVL 751
>sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2
Length = 873
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEYVVRCIKH+F +H+I Q + +NTL+DQLL+ V VQ+E E YE++ P
Sbjct: 636 VQLTEAETEYVVRCIKHTFANHMIFQFDCTNTLNDQLLQKVLVQMEPSESYEVLHYVPAA 695
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L Y++ S Y +++ P +V+ + +K+ V+DCDP TG+PD D+GYDDEY++
Sbjct: 696 NLPYSQPGSCYSLVRLPEDDPTAVSCTFSCTMKYLVRDCDPNTGEPD-DDGYDDEYVL 752
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1
Length = 871
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTE+ETEY VRC+KH F H++ Q + +NTL+DQLLE VTVQ+E + YE++ P P
Sbjct: 634 VQLTEAETEYFVRCVKHMFTDHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLCCIPAP 693
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ Y +++ P +V + +KF+V+DCDP TG PD D GYDDEY++
Sbjct: 694 SLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPDED-GYDDEYVL 750
>sp|Q22498|COPG_CAEEL Probable coatomer subunit gamma OS=Caenorhabditis elegans
GN=T14G10.5 PE=2 SV=1
Length = 870
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 9 RVMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEG-YELIKETP 67
R+ LTES EY V IKH+F + ++LQ E NT++DQLL +V+V+LE P+G +E
Sbjct: 629 RIALTESIAEYTVHMIKHTFANAMVLQFECKNTMNDQLLLDVSVELEDPDGEWETGNTVQ 688
Query: 68 IPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
I +L Y E S + +L++P S A S S+GA+LKF V D DPT+G+PDSD+ Y+ Y++
Sbjct: 689 IDKLPYGEVHSAFSLLEFPDSGAIS-GSLGAILKFKVMDVDPTSGEPDSDDTYEQTYVL 746
>sp|Q54HL0|COPG_DICDI Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1
SV=1
Length = 898
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIK---ET 66
+ LTE+ETEYVV C+KH ++ H++ Q +NTL++Q L NV+V++ +P +L+K
Sbjct: 655 IELTETETEYVVNCVKHIYREHIVFQFNCTNTLNEQQLSNVSVKM-VPSDPKLLKYECSI 713
Query: 67 PIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
PI L Y E Q Y+ ++Y P+ + S LKF VK+ DP+TG+ D + GYDD+Y +
Sbjct: 714 PIDVLPYGEPQQCYVAIRYIPANGYPLCSFSNALKFKVKEVDPSTGELD-EPGYDDQYSL 772
Query: 127 SR 128
R
Sbjct: 773 ER 774
>sp|Q8H852|COPG1_ORYSJ Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica
GN=Os03g0227000 PE=2 SV=2
Length = 884
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYEL--IKETP 67
V LTE+ETEY + +KH + SH++LQ +NT+ +QLLENVTV ++ + E + P
Sbjct: 643 VELTEAETEYAINVVKHIYSSHVVLQYNCTNTIPEQLLENVTVYVDATDAEEFSEVCSKP 702
Query: 68 IPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
+ L Y+ +++ + P + + VLKF VK+ D +TG+ D D G +DEY +
Sbjct: 703 LRSLPYDSPGQIFVAFEKPEHVP-ATGKFSNVLKFIVKEVDTSTGEVDED-GVEDEYQI 759
>sp|Q0WW26|COPG_ARATH Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1
SV=2
Length = 886
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYEL--IKETP 67
V LTE+ETEY V +KH F SH++ Q +NT+ +QLLE V V ++ E E +
Sbjct: 645 VELTEAETEYAVNVVKHIFDSHVVFQYNCTNTIPEQLLERVNVIVDASEAEEFSEVTSKA 704
Query: 68 IPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEY 124
+ L Y+ +++ + P + +V L F VK+ DP+TG+ + D+G +DEY
Sbjct: 705 LNSLPYDSPGQAFVVFEKPAGVP-AVGKFSNTLTFVVKEVDPSTGEAE-DDGVEDEY 759
>sp|Q6Z382|COPG2_ORYSJ Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica
GN=Os07g0201100 PE=2 SV=1
Length = 889
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYEL--IKETP 67
V LTE+ETEY V +KH + H++LQ +NT+ +QLLE V V ++ E E +
Sbjct: 648 VELTEAETEYSVNVVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKS 707
Query: 68 IPRLAYNETQSVYIILQYPPSLADSVTSVGA---VLKFSVKDCDPTTGQPDSDEGYDDEY 124
+ L Y+ ++ + + V + G +LKF VK+ DP+TG+ D D+G +DEY
Sbjct: 708 LRSLPYDSPGQTFVAFEK----LEGVLATGKFSNILKFIVKEVDPSTGEAD-DDGVEDEY 762
>sp|P32074|COPG_YEAST Coatomer subunit gamma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC21 PE=1 SV=2
Length = 935
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTV--QLEIPEGYEL--IKE 65
+ LTE E E+VVR +KH F+ +++LQ ++NTL+D L+NV+V EI + EL +
Sbjct: 694 ISLTEPEAEFVVRGVKHLFKDNVVLQFNITNTLTDIALDNVSVVCTPEISDEAELEELFT 753
Query: 66 TPIPRLAYNETQSVYIILQYPPSLADSVTSVGAV--LKFSVKDCDPTTGQP-DSDEGYDD 122
+ RL +E + Y+ + D + G + L F+ K+ +P T +P D DEG+ D
Sbjct: 754 LQVDRLLPSEEAACYVAFKK----LDEIVMEGFLNNLTFTTKEINPDTNEPFDGDEGFQD 809
Query: 123 EYMV 126
EY +
Sbjct: 810 EYEI 813
>sp|P87140|COPG_SCHPO Probable coatomer subunit gamma OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec21 PE=1 SV=1
Length = 905
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 12 LTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP-R 70
LTE ETE+VV+ +KH F+ HL++Q ++ NTLS+ +LEN V + P +L++E +P
Sbjct: 671 LTEQETEFVVKVVKHVFKDHLVVQFQLHNTLSEVILENAVV-VSTPSTDDLVEECVVPAA 729
Query: 71 LAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTT 111
+ E S+++ ++ S+ +T++ L+F+ K+ D T
Sbjct: 730 IVSGEPVSIFVSFKFNDSVPYPLTTLTNTLQFTTKEIDIHT 770
>sp|Q5FND1|RUVX_GLUOX Putative Holliday junction resolvase OS=Gluconobacter oxydans
(strain 621H) GN=GOX2385 PE=3 SV=1
Length = 160
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 67 PIPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQ 113
P R A + TQ++ L P L D S AV +F +KD D T G+
Sbjct: 85 PAARAASDWTQALSEKLGIPAGLWDERLSSSAVNRFLIKDADMTRGR 131
>sp|C0QYF1|GUAA_BRAHW GMP synthase [glutamine-hydrolyzing] OS=Brachyspira hyodysenteriae
(strain ATCC 49526 / WA1) GN=guaA PE=3 SV=1
Length = 514
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 56 IPEGYELIKETPIPRLAY--NETQSVYIILQYPPSLADSVTSVGAVLKFSVKDC 107
IPEG+ELI +TP LA N+ +++Y I Q+ P + + + + F C
Sbjct: 140 IPEGFELIAKTPNTELAAIENKQKNIYAI-QFHPEVVHTENGIKIIENFLFNIC 192
>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens
GN=PTPRD PE=1 SV=2
Length = 1912
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 69 PRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTT 111
PRL N TQ ++Q+ P + G LKF KD +P T
Sbjct: 827 PRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLT 869
>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus
GN=Ptprd PE=1 SV=3
Length = 1912
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 69 PRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTT 111
PRL N TQ ++Q+ P + G LKF KD +P T
Sbjct: 827 PRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLT 869
>sp|Q3IT59|SYD_NATPD Aspartate--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=aspS PE=3 SV=1
Length = 433
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 37 EVSNTLSDQLLENVTVQLE---IPEGYELIKETPIPRLAYNE 75
+V + + EN T QLE I E +E + ETP PRL+Y E
Sbjct: 245 QVVTAAYEAVAENCTDQLEALGITEEFE-VPETPFPRLSYEE 285
>sp|Q2T9I9|F208A_XENLA Protein FAM208A OS=Xenopus laevis GN=fam208a PE=2 SV=1
Length = 1555
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 4 DQCYCRVMLTESETEYVVRCIKHSFQSHLILQ--LEVSNTLSDQLLENVTVQLEIP 57
D+ YCR + T S TE + KH LI LEV NT S+Q L +V Q ++P
Sbjct: 900 DRDYCRSLTTPSRTERNMLQSKHCHNG-LIENTVLEVYNTFSEQ-LHDVLKQRDVP 953
>sp|P38772|BCD1_YEAST Box C/D snoRNA protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BCD1 PE=1 SV=1
Length = 366
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 26 HSFQSHLILQLEVSNTLSDQLLENVTV-----------QLEIPEGYELIKETPIPRLAYN 74
H S +++L + +LL+N TV + ++PEGYE++ + P P L +
Sbjct: 252 HIMDSKKLVELAIHEKCIGELLKNTTVIEFPTIFVAMTEADLPEGYEVLHQEPRP-LEHT 310
Query: 75 ETQSVYI 81
T + +I
Sbjct: 311 STLNKFI 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,812,106
Number of Sequences: 539616
Number of extensions: 1631985
Number of successful extensions: 3119
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3061
Number of HSP's gapped (non-prelim): 39
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)