RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8506
(131 letters)
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR
domain, endocytosis/exocytosis complex; 2.31A {Bos
taurus} SCOP: b.1.10.3 d.105.1.2
Length = 322
Score = 140 bits (354), Expect = 4e-42
Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F H++ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 85 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPAR 144
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + V+KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 145 SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEAD-DEGYEDEYVL 201
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich,
ADP-ribosylation factors, protein transport; 1.90A {Homo
sapiens} SCOP: b.1.10.3 d.105.1.2
Length = 275
Score = 138 bits (348), Expect = 1e-41
Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 10 VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E E YE++ P
Sbjct: 38 VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPAR 97
Query: 70 RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
L YN+ + Y ++ P +V + ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 98 SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 9e-04
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 46/157 (29%)
Query: 9 RVMLTESETEYV----VRCIKHSFQSHLILQLEVSNTLSDQLLEN-----VTVQLEIPEG 59
+ LTE E Y+ + H+ + L+ + + + + +L++N + + +
Sbjct: 85 NLCLTEFENCYLEGNDI----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 60 YE--LIK--ETPIPRL-----------AY-NETQSVYIILQYPPSLADSVTSVGAVLK-- 101
L + +L Y E + +Y Y + D + L
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT--YHVLVGDLIKFSAETLSEL 198
Query: 102 -FSVKDCDP--TTG--------QPDSDEGYDDEYMVS 127
+ D + T G P + D +Y++S
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTP--DKDYLLS 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.51
Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 27/127 (21%)
Query: 8 CRVMLT---ESETEYV-VRCIKHSFQSHLILQLEVSNTLSDQLLE---NVTVQLEIPEGY 60
C+++LT + T+++ H H + L S LL + Q ++P
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQ-DLPR-- 320
Query: 61 ELIKETP-----IPRLAYNETQSVYIILQYPPSLADSVTSVGAVLKFSVKDCDPTTGQPD 115
E++ P I + + D +T+ +++ S+ +P +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTT---IIESSLNVLEPAEYR-- 372
Query: 116 SDEGYDD 122
+ +D
Sbjct: 373 --KMFDR 377
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit,
electron transpo; HET: HEM; 1.90A {Phormidium laminosum}
SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Length = 249
Score = 28.0 bits (62), Expect = 0.83
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 49 NVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAV-------LK 101
NV L +PEG+ + E IP E Y+ Y ++ VG + +
Sbjct: 70 NVGAVLMLPEGFTIAPEDRIPEEMKEEVGPSYLFQPYADDK-QNIVLVGPLPGDEYEEIV 128
Query: 102 FSVKDCDPTT 111
F V +P T
Sbjct: 129 FPVLSPNPAT 138
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 26.4 bits (59), Expect = 2.9
Identities = 2/20 (10%), Positives = 10/20 (50%)
Query: 12 LTESETEYVVRCIKHSFQSH 31
+++ + + + I S ++
Sbjct: 368 MSKDDVYEISKLILKSIKAG 387
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 26.2 bits (58), Expect = 3.5
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 7 YCRVMLTESETEYVVRCIKHSFQSHLI 33
+ ++ + +Y + F SH++
Sbjct: 116 WIDGLIEANA-QYKKTHGQALFSSHML 141
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone,
glyceraldehyd phosphate, aldol condensation, glycolysis,
lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB:
3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Length = 349
Score = 26.1 bits (58), Expect = 3.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 7 YCRVMLTESETEYVVRCIKHSFQSHLI 33
Y R +L S + V + FQSH+
Sbjct: 105 YVRPLLAISA-QRVSKGGNPLFQSHMW 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.0
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 9/30 (30%)
Query: 47 LENVTVQLEIPEGYELIKETPIPRLAYNET 76
L+ +++L + P LA T
Sbjct: 25 LQA-SLKLYADDS--------APALAIKAT 45
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Length = 358
Score = 25.8 bits (57), Expect = 5.4
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 7 YCRVMLTESETEYVVRCIKHSFQSHLI 33
+ +L E ++ K F SH+I
Sbjct: 118 WIDGLLDAGE-KHFAATGKPLFSSHMI 143
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI,
protein structure initiative, center for structural
genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP:
e.54.1.1
Length = 298
Score = 25.6 bits (56), Expect = 5.7
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 44 DQLLENVTVQLEIPEGYELIKETPIPRL 71
+ + V++ +P+G E+ K+T ++
Sbjct: 148 REFNFSGGVRISVPDGEEVAKKTGNEKV 175
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 25.0 bits (55), Expect = 8.5
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 31 HLILQ-LEVSNTLSDQLLENVTVQLEIPEGYELIKETPIPRL 71
L+ + S + E +E GY + ET PRL
Sbjct: 63 CLMHSKGDAKWIQSVPIWERSPW-VESEIGYTALSETESPRL 103
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 25.2 bits (56), Expect = 9.2
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 12 LTESETEYVVRCIKHSFQSH 31
L + + + +F+S
Sbjct: 353 LNLESVQNIAHSVLKTFESF 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,843,400
Number of extensions: 94059
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 18
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)