RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8506
         (131 letters)



>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal
           domain, first subdomain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 163

 Score =  145 bits (368), Expect = 2e-46
 Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 10  VMLTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPEGYELIKETPIP 69
           V LTESETEYV+RC KH+F +H++ Q + +NTL+DQ LENVTVQ+E  E YE++   P  
Sbjct: 38  VALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPAR 97

Query: 70  RLAYNETQSVYIILQYPPSLADSVT-SVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMV 126
            L YN+  + Y ++  P     +V  +   ++KF+VKDCDPTTG+ D DEGY+DEY++
Sbjct: 98  SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETD-DEGYEDEYVL 154


>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
           {Phormidium laminosum [TaxId: 32059]}
          Length = 187

 Score = 25.8 bits (57), Expect = 1.3
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 49  NVTVQLEIPEGYELIKETPIPRLAYNETQSVYIILQYPPSLADSVTSVGAV-------LK 101
           NV   L +PEG+ +  E  IP     E    Y+   Y      ++  VG +       + 
Sbjct: 70  NVGAVLMLPEGFTIAPEDRIPEEMKEEVGPSYLFQPYADDK-QNIVLVGPLPGDEYEEIV 128

Query: 102 FSVKDCDPTT 111
           F V   +P T
Sbjct: 129 FPVLSPNPAT 138


>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
          [TaxId: 10991]}
          Length = 268

 Score = 25.7 bits (56), Expect = 2.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 12 LTESETEYVVRCIKHSFQSHLILQLEVSNTLSDQLLENVTVQLEIPE-GYELIKETPI 68
          L E+ +EYVVRC   +F     L     N LS     N+  QL +   GY      P+
Sbjct: 12 LLEAISEYVVRCNGDTFSG---LTTGDFNALS-----NMFTQLSVSSAGYVSDPRVPL 61


>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 6/28 (21%), Positives = 16/28 (57%)

Query: 44  DQLLENVTVQLEIPEGYELIKETPIPRL 71
            +   +  V++ +P+G E+ K+T   ++
Sbjct: 148 REFNFSGGVRISVPDGEEVAKKTGNEKV 175


>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
           protein C {Helicobacter pylori [TaxId: 210]}
          Length = 371

 Score = 25.1 bits (53), Expect = 3.2
 Identities = 3/19 (15%), Positives = 8/19 (42%)

Query: 12  LTESETEYVVRCIKHSFQS 30
           L     + +   +  +F+S
Sbjct: 352 LNLESVQNIAHSVLKTFES 370


>d2foka2 a.4.5.12 (A:144-286) Restriction endonuclease FokI,
           N-terminal (recognition) domain {Flavobacterium
           okeanokoites [TaxId: 244]}
          Length = 143

 Score = 23.4 bits (50), Expect = 8.6
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 84  QYPPSLADSVTSVGAVLKFSVKDCDPTTGQPDSDEGYDDEYMVSRKGL 131
           +Y   +   +  +G V +   +   PT G+PD+ E     + ++ +GL
Sbjct: 82  KYARMIGGWLDKLGLVKQGKKEFIIPTLGKPDNKEFISHAFKITGEGL 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 448,746
Number of extensions: 17644
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.6 bits)