BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8507
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
 pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
          Length = 1214

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 49  FPNASESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPI 108
            P  ++SS+ AYK ++  G +DN       + N L  R  ++   +LL   L N+K+N  
Sbjct: 263 LPPPTDSSVHAYKTVLSRGYIDNA------QFNPLALRSNVL--LMLLQFTLSNLKINKS 314

Query: 109 S 109
           S
Sbjct: 315 S 315


>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
          Length = 1196

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 49  FPNASESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPI 108
            P  ++SS+ AYK ++  G +DN       + N L  R  ++   +LL   L N+K+N  
Sbjct: 245 LPPPTDSSVHAYKTVLSRGYIDNA------QFNPLALRSNVL--LMLLQFTLSNLKINKS 296

Query: 109 S 109
           S
Sbjct: 297 S 297


>pdb|3K1Q|B Chain B, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
          Length = 1027

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 49  FPNASESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPI 108
            P  ++SS+ AYK ++  G +DN       + N L  R  ++   +LL   L N+K+N  
Sbjct: 76  LPPPTDSSVHAYKTVLSRGYIDNA------QFNPLALRSNVL--LMLLQFTLSNLKINKS 127

Query: 109 S 109
           S
Sbjct: 128 S 128


>pdb|1ZTY|A Chain A, Crystal Structure Of The Chitin Oligasaccharide Binding
           Protein
 pdb|1ZU0|A Chain A, Crystal Structure Of The Liganded Chitin Oligasaccharide
           Binding Protein
          Length = 529

 Score = 26.9 bits (58), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 1   MRVPNIVKNDD--GGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSIL 58
           +RVP I  ND   G +  +   EL  DW        D+ YAA       W+P A   + +
Sbjct: 195 LRVPQIANNDQLLGKIVNS---EL--DWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFM 249


>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
          Asp172) From Plasmodium Vivax In Complex With
          Mt-Coformycin
          Length = 370

 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 34 FDKDYAAGCITQERWFPNASESSILAYKLLVQTGR 68
          F  D+   CI +    PN S+  +L Y L  + G+
Sbjct: 49 FSADFFVSCIRKYNLQPNLSDEEVLDYYLFAKGGK 83


>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
          Vivax In Complex With Mt-Coformycin
          Length = 371

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 34 FDKDYAAGCITQERWFPNASESSILAYKLLVQTGR 68
          F  D+   CI +    PN S+  +L Y L  + G+
Sbjct: 49 FSADFFVSCIRKYNLQPNLSDEEVLDYYLFAKGGK 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.147    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,510,620
Number of Sequences: 62578
Number of extensions: 202221
Number of successful extensions: 441
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 7
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)