BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8507
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 75/93 (80%), Gaps = 1/93 (1%)
Query: 1 MRVPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAY 60
+RVP+++KND+GGLP +FWL LF +WL LQ+ FD++Y G +T+E WFPNAS +ILAY
Sbjct: 758 VRVPHVIKNDNGGLP-DFWLLLFSEWLGNLQKIFDEEYRDGRLTKECWFPNASSDAILAY 816
Query: 61 KLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPK 93
KL+VQTG VDNPVDK L+ NRLV+ DGIIN +
Sbjct: 817 KLIVQTGHVDNPVDKELVLTNRLVNSDGIINQR 849
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHA 156
M L+ IKL+ I V+++ S G+ + F I L F+T +GNR RRV+LS++ ++H
Sbjct: 998 AMTLLGIKLSAIPAVILILSVGMMLCFNVLISLGFMTSVGNRQRRVQLSMQMSLGPLVHG 1057
Query: 157 GLILLVAISILAFSEFQFILRIFFYMLFGIVLVG 190
L VA+ +L+ S F+F++R F ++L ++ VG
Sbjct: 1058 MLTSGVAVFMLSTSPFEFVIRHFCWLLLVVLCVG 1091
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 87.8 bits (216), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 11 DGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVD 70
D LP WL FRDWL GLQ++FD D+ G IT + N S+ ++LAYKLLVQTG
Sbjct: 836 DRQLP-KMWLHYFRDWLQGLQDAFDSDWETGKITYSN-YKNGSDDAVLAYKLLVQTGNRA 893
Query: 71 NPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
P+D S + RLV DGIINP + + +P++
Sbjct: 894 KPIDISQLTKQRLVDADGIINPNAFYIYLTAWVSNDPVA 932
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 53 SESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVL 112
S S +LA LV + NP +I V ++ +L +M L+ IKL+ + V+
Sbjct: 1030 SISVVLACTFLVCALFLLNPWTAGII-----VVVLALMTVELFGMMGLIGIKLSAVPVVI 1084
Query: 113 IVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172
++ S GI + F +I L+FLT IG+++RR L++EHM++ VL + L+ + +LA SEF
Sbjct: 1085 LIASVGIGVEFTVHIALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEF 1144
Query: 173 QFILRIFFYML 183
FI+R FF +L
Sbjct: 1145 DFIVRYFFAVL 1155
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 87.8 bits (216), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 829 VKYVMLEENKQLP-KMWLHYFRDWLQGLQDAFDSDWETGKIMPNN-YKNGSDDGVLAYKL 886
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 887 LVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVA 933
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 55 SSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIV 114
S +LA LV + NP +I V ++ +L +M L+ IKL+ + V+++
Sbjct: 1033 SVVLACTFLVCAVFLLNPWTAGII-----VMVLALMTVELFGMMGLIGIKLSAVPVVILI 1087
Query: 115 NSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQF 174
S GI + F ++ L+FLT IG+++RR L++EHM++ VL + L+ + +LA SEF F
Sbjct: 1088 ASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDF 1147
Query: 175 ILRIFFYML 183
I+R FF +L
Sbjct: 1148 IVRYFFAVL 1156
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 87.8 bits (216), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 815 VKYVMLEENKQLP-QMWLHYFRDWLQGLQDAFDSDWETGRIMPNN-YKNGSDDGVLAYKL 872
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 873 LVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVA 919
Score = 77.0 bits (188), Expect = 7e-14, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 53 SESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVL 112
S S +LA LV + NP +I V ++ +L +M L+ IKL+ + V+
Sbjct: 1017 SISVVLACTFLVCAVFLLNPWTAGII-----VMVLALMTVELFGMMGLIGIKLSAVPVVI 1071
Query: 113 IVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172
++ S GI + F ++ L+FLT IG+++ R L++EHM++ VL + L+ + +LA SEF
Sbjct: 1072 LIASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVSTLLGVLMLAGSEF 1131
Query: 173 QFILRIFFYML 183
FI+R FF +L
Sbjct: 1132 DFIVRYFFAVL 1142
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 80.5 bits (197), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 19 WLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLI 78
WL +R+WL G+Q +FD+D+A+G IT+ + N SE LAYKLL+QTG P+D S +
Sbjct: 781 WLHYYRNWLQGIQAAFDQDWASGRITRHS-YRNGSEDGALAYKLLIQTGDAQEPLDFSQL 839
Query: 79 KHNRLVSRDGIINPKLLLVMYLMNIKLNPI 108
+LV R+G+I P+L + + + +P+
Sbjct: 840 TTRKLVDREGLIPPELFYMGLTVWVSSDPL 869
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++EH ++
Sbjct: 1002 ELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTTQGSRNLRAAHALEHTFAP 1061
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFF 180
V + L+ + +LA S F FI+R FF
Sbjct: 1062 VTDGAISTLLGLLMLAGSHFDFIVRYFF 1089
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 70/110 (63%)
Query: 88 GIINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIE 147
GI+ +L M L+ IKLNP+S V ++ + GI + F ++ +SFLT +G R +R +++
Sbjct: 1216 GIMTCELAGFMGLVGIKLNPVSAVTLITAVGIGVEFTVHVVVSFLTALGTRSQRTSSAVD 1275
Query: 148 HMYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
++ V+H L+ I +L FSEF+F+++ FF ++ ++ +G++ ++L
Sbjct: 1276 RVFVPVIHGSFSTLLGILMLGFSEFEFVVKYFFIVMTALICIGIINGLIL 1325
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 6 IVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWF---PNASESSILAYKL 62
++KN + +WL L RDWL+ +Q FD++ A G N SE + LA+ L
Sbjct: 988 VIKNKNEEPSEKYWLGLMRDWLISIQRGFDEEVAKGSFNLTSGTVIGSNVSEDARLAHAL 1047
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIIN 91
+ G + + + RLV GIIN
Sbjct: 1048 MCSHGSLFGCAGR--VGKIRLVDASGIIN 1074
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 79.3 bits (194), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 65/99 (65%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M L+ IKL+ I V+++ S GI + F +I L FLT IG+R+ R +++EHM++
Sbjct: 1055 ELFGIMGLIGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAP 1114
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGL 191
V+ + L+ + +LA SEF FI+R FF +L + L+G+
Sbjct: 1115 VIDGAISTLLGVLMLAGSEFDFIMRYFFAVLAILTLLGI 1153
Score = 77.8 bits (190), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V +VK+ + LP WL F+DWL GLQ +FD D+ AG IT + + N +E LAYK
Sbjct: 819 VKYVVKDGNHKLP-RMWLHYFQDWLKGLQATFDADWEAGKITYDS-YRNGTEDGALAYKP 876
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPI 108
L+QTG P + S + RLV DG+I P++ + + + +P+
Sbjct: 877 LIQTGSKKEPFNYSQLTSRRLVDGDGLIPPEVFYIYLTVWVSNDPL 922
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 77.0 bits (188), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 19 WLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLI 78
WL +R WL G+Q +FD+D+A+G IT + N SE LAYKLL+QTG P+D S +
Sbjct: 781 WLHYYRSWLQGIQAAFDQDWASGRITCHS-YRNGSEDGALAYKLLIQTGNAQEPLDFSQL 839
Query: 79 KHNRLVSRDGIINPKLLLVMYLMNIKLNPI 108
+LV ++G+I P+L + + + +P+
Sbjct: 840 TTRKLVDKEGLIPPELFYMGLTVWVSSDPL 869
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++E ++
Sbjct: 1002 ELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVHVALGFLTSHGSRNLRAASALEQTFAP 1061
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFF 180
V + L+ + +LA S F FI+R FF
Sbjct: 1062 VTDGAVSTLLGLLMLAGSNFDFIIRYFF 1089
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F L+ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFS 1199
Query: 156 A-GLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
L I +LAF++ Q +F M IVL+G +
Sbjct: 1200 GITLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGATH 1238
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFS 1199
Query: 156 A-GLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
L I +LAF++ Q +F M +VL+G +
Sbjct: 1200 GITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATH 1238
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R R ++ HM S V
Sbjct: 1141 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFS 1200
Query: 156 A-GLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
L I +LAF++ Q +F M +VL+G +
Sbjct: 1201 GITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATH 1239
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 102 NIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILL 161
N +L+ IS + IV S G + ++++ F+ RD R+ + M +L + L
Sbjct: 716 NTRLDIISMITIVMSVGFSVDYVTHTTFHFVI---QRDNRLEKCLLVMTEPILQSALSTA 772
Query: 162 VAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
+ +S+L+F +I+R F +F +V +G+L+
Sbjct: 773 IGVSLLSFVH-SYIVRTFVNTVFFVVGLGILH 803
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1
PE=1 SV=2
Length = 1383
Score = 37.4 bits (85), Expect = 0.067, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDR-RVRLSIEHMYSVVLHA 156
MY+ NI +N +S +V SSGI I F + + + R + R ++ + ++L
Sbjct: 1174 MYIFNIPVNALSATNLVMSSGILIEFSVNVLKGYACSLRQRAKDRAESTVGSIGPIILSG 1233
Query: 157 GLILLVAISILAFSEFQFILRIFFYMLFGIVLV 189
++ + ++ I+ ++F+ LF I +V
Sbjct: 1234 PVVTMAGSTMFLSGAHLQIITVYFFKLFLITIV 1266
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 86 RDGIINPKLLLVMYLMN---------IKLNPISCVLIVNSSGIYIHFISYICLSF-LTCI 135
R GI+N L ++M L++ I N +S + +V + G+ + F+S+I SF ++
Sbjct: 1137 RSGILN-LLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTK 1195
Query: 136 GNRDRRVRLSIEHMYSVVLHAGLIL--LVAISILAFSEFQFILRIFFY 181
R R + + M S V AG+ + I IL F++ Q I +IFF+
Sbjct: 1196 PTRLERAKDATIFMGSAVF-AGVAMTNFPGILILGFAQAQLI-QIFFF 1241
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 34.3 bits (77), Expect = 0.55, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
+M + I N +S + +V + G+ + F+S+I SF ++ R R + + M S V
Sbjct: 1156 LMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVF- 1214
Query: 156 AGLIL--LVAISILAFSEFQFILRIFFY 181
AG+ + I IL F++ Q I +IFF+
Sbjct: 1215 AGVAMTNFPGILILGFAQAQLI-QIFFF 1241
>sp|P03524|VGLG_RABVE Glycoprotein G OS=Rabies virus (strain ERA) GN=G PE=1 SV=1
Length = 524
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF 131
L V Y++ IK+N +C +V + Y +F+ Y+ +F
Sbjct: 65 LKVGYILAIKMNGFTCTGVVTEAETYTNFVGYVTTTF 101
>sp|P16288|VGLG_RABVS Glycoprotein G OS=Rabies virus (strain SAD B19) GN=G PE=1 SV=1
Length = 524
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF 131
L V Y++ IK+N +C +V + Y +F+ Y+ +F
Sbjct: 65 LKVGYILAIKVNGFTCTGVVTEAETYTNFVGYVTTTF 101
>sp|Q6R5J1|DISP2_DANRE Protein dispatched homolog 2 OS=Danio rerio GN=disp2 PE=2 SV=1
Length = 1476
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHM-YSVVL 154
++ L+ +LN + + I ++G+ + F++ C+S+ L +R RV SI+ M V
Sbjct: 1039 LLVLLEWQLNGVEALFISAAAGLSVDFVANYCISYSLAPHSDRLGRVAHSIKRMGCPVAT 1098
Query: 155 HAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGL 191
AG V I +L + F F +L V G
Sbjct: 1099 GAGAYFCVGIIMLPATALLFRKLGIFLLLVKCVACGF 1135
>sp|Q08089|VGLG_RABVV Glycoprotein G OS=Rabies virus (strain Vnukovo-32) GN=G PE=1 SV=1
Length = 524
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF 131
L V Y++ IK+N +C +V + Y +F+ Y+ +F
Sbjct: 65 LKVGYILAIKMNGFTCTGVVTEAENYTNFVGYVTTTF 101
>sp|Q3M6T7|Y3693_ANAVT UPF0182 protein Ava_3693 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=Ava_3693 PE=3 SV=1
Length = 996
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 148 HMYSVVLHAGLILLVAISILAFSEFQFILR---IFFYMLFGIVL 188
++S VL+ GLI+ VAI+IL +S QF LR + ++FG +L
Sbjct: 178 QVFSQVLYLGLIVGVAIAILIYS--QFFLRAIAVILSVVFGTIL 219
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNR--DRRVRLSIEHMYSVVLH 155
M L I N +S + +V++ G+ + F+S+I SF +R +I +V
Sbjct: 1183 MALWGISYNAVSLINLVSAVGMSVEFVSHITRSFAISTKPTWLERAKEATISMGSAVFAG 1242
Query: 156 AGLILLVAISILAFSEFQFILRIFFY 181
+ L I +L ++ Q I +IFF+
Sbjct: 1243 VAMTNLPGILVLGLAKAQLI-QIFFF 1267
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDR----RVRLSIEHM-YS 151
+M L+ I LN +S V ++ G+ + F +I SF + RV S+ + S
Sbjct: 1043 LMALLGISLNAVSLVNLIICVGLGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNTIGES 1102
Query: 152 VVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLV 189
V+ L + + +LAF++ + +F M F +++V
Sbjct: 1103 VIKGITLTKFIGVCVLAFAQSKIFDVFYFRMWFTLIIV 1140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.147 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,596,089
Number of Sequences: 539616
Number of extensions: 2646183
Number of successful extensions: 7120
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7092
Number of HSP's gapped (non-prelim): 37
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)