Query psy8507
Match_columns 197
No_of_seqs 204 out of 487
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:42:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1935|consensus 100.0 5.9E-50 1.3E-54 385.7 14.3 193 1-197 726-1062(1143)
2 TIGR00918 2A060602 The Eukaryo 100.0 1.9E-44 4.2E-49 362.3 15.1 194 2-197 768-1109(1145)
3 KOG1934|consensus 100.0 1.5E-36 3.3E-41 298.9 8.5 189 8-197 556-822 (868)
4 PF02460 Patched: Patched fami 100.0 1.9E-35 4.1E-40 288.4 9.8 182 15-197 530-789 (798)
5 TIGR00917 2A060601 Niemann-Pic 100.0 1.4E-30 3.1E-35 264.3 9.3 142 56-197 989-1195(1204)
6 KOG1933|consensus 99.7 1.2E-18 2.6E-23 175.8 -1.4 101 97-197 1064-1166(1201)
7 TIGR00921 2A067 The (Largely A 99.2 3.9E-11 8.5E-16 115.6 8.9 100 97-197 611-712 (719)
8 TIGR00921 2A067 The (Largely A 99.1 6.4E-10 1.4E-14 107.2 9.7 99 97-196 237-338 (719)
9 COG1033 Predicted exporters of 99.0 9.6E-10 2.1E-14 108.0 8.9 99 96-195 611-711 (727)
10 TIGR00916 2A0604s01 protein-ex 98.8 1.5E-08 3.3E-13 84.8 8.7 83 95-177 88-175 (192)
11 COG1033 Predicted exporters of 98.7 7.2E-08 1.6E-12 95.0 8.6 88 97-184 240-330 (727)
12 PF03176 MMPL: MMPL family; I 98.6 4.7E-08 1E-12 86.3 5.7 94 98-192 192-289 (333)
13 TIGR03480 HpnN hopanoid biosyn 98.6 2.1E-07 4.6E-12 92.6 9.0 79 97-179 756-834 (862)
14 PRK09579 multidrug efflux prot 98.4 6.3E-07 1.4E-11 91.1 9.0 99 95-195 373-474 (1017)
15 TIGR00966 3a0501s07 protein-ex 98.4 1.1E-06 2.4E-11 76.0 8.4 95 95-194 139-238 (246)
16 PRK10614 multidrug efflux syst 98.4 9.1E-07 2E-11 89.9 8.6 98 96-195 375-475 (1025)
17 TIGR03480 HpnN hopanoid biosyn 98.4 1.8E-06 4E-11 85.9 9.6 81 97-177 313-396 (862)
18 PRK10555 aminoglycoside/multid 98.3 1.6E-06 3.5E-11 88.3 8.3 98 96-195 381-482 (1037)
19 TIGR00915 2A0602 The (Largely 98.3 1.6E-06 3.5E-11 88.3 7.9 97 96-194 381-481 (1044)
20 PRK15127 multidrug efflux syst 98.3 2.2E-06 4.8E-11 87.4 8.0 98 95-194 380-481 (1049)
21 PRK09577 multidrug efflux prot 98.2 2.9E-06 6.4E-11 86.3 8.2 97 97-195 381-481 (1032)
22 TIGR00833 actII Transport prot 98.2 4.2E-06 9.1E-11 84.2 9.0 83 97-179 217-307 (910)
23 TIGR01129 secD protein-export 98.2 5.5E-06 1.2E-10 76.6 7.6 96 97-193 290-388 (397)
24 PRK10503 multidrug efflux syst 98.1 4.7E-06 1E-10 85.0 7.2 99 95-195 383-484 (1040)
25 PRK13022 secF preprotein trans 98.1 1E-05 2.2E-10 71.9 8.0 82 97-178 170-256 (289)
26 PF00873 ACR_tran: AcrB/AcrD/A 98.0 1.6E-05 3.4E-10 80.6 8.4 99 95-195 373-475 (1021)
27 PRK13023 bifunctional preprote 98.0 1.8E-05 3.8E-10 78.7 7.8 97 97-194 320-419 (758)
28 PF12349 Sterol-sensing: Stero 97.9 8.2E-05 1.8E-09 60.1 9.5 84 95-178 24-110 (153)
29 PRK08578 preprotein translocas 97.9 3.6E-05 7.8E-10 68.5 7.6 70 97-170 178-247 (292)
30 PRK05812 secD preprotein trans 97.9 5.7E-05 1.2E-09 71.9 8.8 95 97-192 375-472 (498)
31 PRK13024 bifunctional preprote 97.8 5.3E-05 1.1E-09 75.3 8.1 82 97-178 308-392 (755)
32 TIGR00914 2A0601 heavy metal e 97.7 8.7E-05 1.9E-09 75.8 7.2 98 95-196 383-493 (1051)
33 TIGR00914 2A0601 heavy metal e 97.7 3.6E-05 7.8E-10 78.5 4.2 76 97-172 922-1000(1051)
34 PRK08343 secD preprotein trans 97.6 0.00019 4.2E-09 66.9 8.2 82 97-178 305-387 (417)
35 PRK14726 bifunctional preprote 97.6 0.00013 2.8E-09 73.5 7.5 97 97-194 414-513 (855)
36 COG0841 AcrB Cation/multidrug 97.6 0.00018 3.8E-09 73.7 7.8 93 95-191 371-467 (1009)
37 PF02355 SecD_SecF: Protein ex 97.6 0.00033 7.2E-09 58.7 8.0 100 95-195 72-176 (189)
38 TIGR00917 2A060601 Niemann-Pic 97.5 0.0004 8.6E-09 72.3 9.5 85 94-178 622-720 (1204)
39 TIGR00833 actII Transport prot 97.5 0.00054 1.2E-08 69.2 9.3 80 102-181 798-879 (910)
40 PRK15127 multidrug efflux syst 97.4 0.00019 4.2E-09 73.4 5.8 98 97-196 915-1016(1049)
41 PF02460 Patched: Patched fami 97.4 0.00044 9.5E-09 68.6 7.9 85 94-178 266-352 (798)
42 PRK12933 secD preprotein trans 97.3 0.00094 2E-08 65.1 8.1 98 97-195 482-583 (604)
43 TIGR00918 2A060602 The Eukaryo 97.3 0.00085 1.8E-08 69.6 8.1 85 94-178 444-531 (1145)
44 TIGR00915 2A0602 The (Largely 97.2 0.00054 1.2E-08 70.1 6.4 98 97-196 914-1014(1044)
45 PRK13024 bifunctional preprote 97.2 0.0015 3.3E-08 65.0 8.6 95 97-192 620-719 (755)
46 PRK12911 bifunctional preprote 97.1 0.0011 2.4E-08 69.1 6.7 95 97-192 951-1048(1403)
47 PRK10503 multidrug efflux syst 97.1 0.0017 3.7E-08 66.6 8.1 98 97-196 908-1009(1040)
48 PRK10555 aminoglycoside/multid 96.9 0.0022 4.8E-08 65.7 7.2 98 97-196 913-1013(1037)
49 PRK13021 secF preprotein trans 96.6 0.0084 1.8E-07 53.8 7.9 93 97-194 169-266 (297)
50 PRK09577 multidrug efflux prot 96.4 0.0052 1.1E-07 63.0 5.5 96 97-194 909-1007(1032)
51 PRK14726 bifunctional preprote 96.3 0.018 3.8E-07 58.4 8.4 82 97-178 715-801 (855)
52 PRK09579 multidrug efflux prot 96.1 0.0076 1.7E-07 61.8 5.0 75 97-171 888-966 (1017)
53 PF00873 ACR_tran: AcrB/AcrD/A 95.9 0.023 5E-07 57.9 7.3 97 97-195 906-1006(1021)
54 PRK10614 multidrug efflux syst 95.6 0.021 4.6E-07 58.6 5.7 96 97-194 894-993 (1025)
55 COG0342 SecD Preprotein transl 94.3 0.096 2.1E-06 50.3 6.2 95 97-192 385-482 (506)
56 KOG1934|consensus 94.3 0.096 2.1E-06 53.3 6.4 84 95-178 301-386 (868)
57 KOG1935|consensus 93.6 0.16 3.5E-06 51.7 6.3 83 95-178 459-542 (1143)
58 COG0341 SecF Preprotein transl 91.0 1.7 3.6E-05 39.4 8.9 82 97-178 177-263 (305)
59 COG4258 Predicted exporter [Ge 88.0 1.3 2.8E-05 44.0 6.3 74 97-179 689-762 (788)
60 COG0841 AcrB Cation/multidrug 87.8 1.2 2.7E-05 46.2 6.4 73 97-173 893-972 (1009)
61 PRK13023 bifunctional preprote 83.6 6.4 0.00014 39.9 8.9 94 97-191 621-719 (758)
62 COG2409 Predicted drug exporte 79.5 10 0.00022 39.0 8.9 74 105-178 240-317 (937)
63 COG3696 Putative silver efflux 76.8 1.8 3.9E-05 44.6 2.5 72 96-167 377-455 (1027)
64 TIGR00920 2A060605 3-hydroxy-3 68.9 17 0.00038 37.5 7.2 81 95-175 108-190 (886)
65 COG4258 Predicted exporter [Ge 66.4 23 0.00049 35.6 7.3 78 97-177 301-378 (788)
66 KOG3664|consensus 56.7 0.53 1.2E-05 48.5 -5.8 74 97-170 851-924 (999)
67 PRK12911 bifunctional preprote 56.0 47 0.001 36.0 7.9 90 101-191 1286-1380(1403)
68 KOG3411|consensus 52.0 22 0.00048 28.8 3.8 42 54-96 12-54 (143)
69 COG5547 Small integral membran 46.1 53 0.0012 23.1 4.4 42 146-195 4-47 (62)
No 1
>KOG1935|consensus
Probab=100.00 E-value=5.9e-50 Score=385.71 Aligned_cols=193 Identities=41% Similarity=0.717 Sum_probs=188.4
Q ss_pred CCcCceeeCCCCCCccccchHHHHHHHHhhhhhhhHhhhcccccccccCCCCChhhHHHhhhhhhccCCCCCcchhhHhh
Q psy8507 1 MRVPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLIKH 80 (197)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~WL~~~~~wl~~lq~~fD~~~~~~~i~~~~w~~n~~~~~ila~r~~iqt~~~~~~~~~~~~~~ 80 (197)
.++||||||+|+++| +|||++|||||+++|++||+||++|+|+.+.|-+|+|+|+++||||+||||..+| |.+++.+
T Consensus 726 ~s~k~vik~~n~~l~-~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v~n~S~d~~lA~kL~~qtG~~~~--~~~~l~k 802 (1143)
T KOG1935|consen 726 GSSKYVIKNENEQLP-KYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGVSNGSEDARLAYKLLCQTGSLDN--DAGRLGK 802 (1143)
T ss_pred ccCceeecCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCChHHHHHHHHHHhcCCccc--hhHhhhh
Confidence 378999999999999 9999999999999999999999999999999889999999999999999999998 7778999
Q ss_pred hhhhhcCCCcChhHHH----------------------------------------------------------------
Q psy8507 81 NRLVSRDGIINPKLLL---------------------------------------------------------------- 96 (197)
Q Consensus 81 ~r~v~~~~~i~p~~f~---------------------------------------------------------------- 96 (197)
+|+||+ |+|||++||
T Consensus 803 ~rlVd~-giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL~dTa~Ivk 881 (1143)
T KOG1935|consen 803 IRLVDA-GIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGLTDTADIVK 881 (1143)
T ss_pred hhhhhc-cccCHHHHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHhhhhhHHHHHH
Confidence 999998 999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8507 97 -------------------------------------------------------------------------------- 96 (197)
Q Consensus 97 -------------------------------------------------------------------------------- 96 (197)
T Consensus 882 ~I~~iR~~c~~~~s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~Liv~sL~~mt~eL~G 961 (1143)
T KOG1935|consen 882 AIESIRASCEEYTSLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAGLIVCSLAIMTVELFG 961 (1143)
T ss_pred HHHHHHHHHhhcccCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhH
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFIL 176 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~ 176 (197)
+|++.||+||+|+.|.|+.+||+.|||++|+..+|+++.|+|++|+..|++++..|+.+|++||++|++||++|+++++.
T Consensus 962 ~Mgl~GIKlS~i~aViLi~sVGigveFtvhv~l~FlTs~G~rs~R~s~al~~~F~Pv~hG~lST~lgv~MLs~S~FdFvV 1041 (1143)
T KOG1935|consen 962 FMGLLGIKLSAIPAVILIASVGIGVEFTVHVALGFLTALGTRSQRASSALQHMFVPVSHGALSTLLGVLMLSFSEFDFVV 1041 (1143)
T ss_pred HHHhhceeeccchhHHHHHHhhhchhhhHHHHHHHHHhhccchhHhHHhhhhcchhhhhhHHHHHhhHheeccCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q psy8507 177 RIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 177 ~~FF~~~~~vi~~G~~hGLvl 197 (197)
+|||.++.+++++|++|||++
T Consensus 1042 ryFf~~ltvl~~lGv~ngL~~ 1062 (1143)
T KOG1935|consen 1042 RYFFAVLTVLTCLGVLNGLVV 1062 (1143)
T ss_pred HHHHHHHHHHHHHHHhccchH
Confidence 999999999999999999984
No 2
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=1.9e-44 Score=362.34 Aligned_cols=194 Identities=47% Similarity=0.822 Sum_probs=181.4
Q ss_pred CcCceeeCCCCCCccccchHHHHHHHHhhhhhhhHhhhcccccccccCCCCChhhHHHhhhhhhccCCCCCcchhhHhhh
Q psy8507 2 RVPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLIKHN 81 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~WL~~~~~wl~~lq~~fD~~~~~~~i~~~~w~~n~~~~~ila~r~~iqt~~~~~~~~~~~~~~~ 81 (197)
+++|+++++|+++| +|||++|++||+.+|.+||++|+.|+++.+. +.|+++++.+||++++|||+.++|.|++++.+.
T Consensus 768 ~~~~i~~~~~~~~~-~~WLddf~~wL~~lq~~~d~~~~~g~~~~~~-~~n~s~~~~~~~~l~~qtg~~~~p~~~~~~~~~ 845 (1145)
T TIGR00918 768 SVKYVLKEDNGQLP-RMWLHYFRDWLQGLQKAFDEDWRDGRITKEN-YRNGSDDAVLAYKLLVQTGHRDKPVDKEQLTTQ 845 (1145)
T ss_pred cCceeecCCCCCcc-chHHHHHHHHHHHhhhhhhhhhhhccccccc-ccCCccccchhhhhcccccccCCcccccccccc
Confidence 67899999999989 9999999999999999999999999998876 679999999999999999999999999888888
Q ss_pred hhhhcCCCcChhHHH-----------------------------------------------------------------
Q psy8507 82 RLVSRDGIINPKLLL----------------------------------------------------------------- 96 (197)
Q Consensus 82 r~v~~~~~i~p~~f~----------------------------------------------------------------- 96 (197)
|+|+.+|.+||+.||
T Consensus 846 r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~~p~~~~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d 925 (1145)
T TIGR00918 846 RLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQ 925 (1145)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCcchhhcccccccCCcchhcccccccccccccccccccchhheeeEEEcCCCCHHH
Confidence 988888777664332
Q ss_pred --------------------------------------------------------------------------------
Q psy8507 97 -------------------------------------------------------------------------------- 96 (197)
Q Consensus 97 -------------------------------------------------------------------------------- 96 (197)
T Consensus 926 ~i~al~~~R~Ia~~~~~~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~v~ 1005 (1145)
T TIGR00918 926 FVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVE 1005 (1145)
T ss_pred HHHHHHHHHHHHHhhhhcCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 ---VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ---~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|++|||+||+||++||+||||+|||||+||+|+|+++.++|++|+++||+++|+||++|++||++|+++|+|+++.
T Consensus 1006 v~G~M~lwgI~LnaVS~vnLimsIGisVefsaHI~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~ 1085 (1145)
T TIGR00918 1006 LFGMMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAIGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFD 1085 (1145)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHhhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcC
Q psy8507 174 FILRIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hGLvl 197 (197)
++.+||||++++++++|++||||+
T Consensus 1086 ~~~~~Ffk~~~l~V~~g~lHgLv~ 1109 (1145)
T TIGR00918 1086 FIVRYFFAVLAVLTCLGVLNGLVL 1109 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999985
No 3
>KOG1934|consensus
Probab=100.00 E-value=1.5e-36 Score=298.88 Aligned_cols=189 Identities=20% Similarity=0.363 Sum_probs=156.1
Q ss_pred eCCCCCCccccchHHHHHHHHhhh---hhhhHhhhccc----ccc---ccc------C-CCCChhhHHHhhhhhhccCCC
Q psy8507 8 KNDDGGLPGNFWLELFRDWLLGLQ---ESFDKDYAAGC----ITQ---ERW------F-PNASESSILAYKLLVQTGRVD 70 (197)
Q Consensus 8 ~~~~~~~~~~~WL~~~~~wl~~lq---~~fD~~~~~~~----i~~---~~w------~-~n~~~~~ila~r~~iqt~~~~ 70 (197)
+...|...-+|||+.|.++++..+ ...|++|.... +.. ..| + .+..+..+.++|+.++-.|..
T Consensus 556 ~~~~G~~sT~~wlr~y~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~ 635 (868)
T KOG1934|consen 556 PYSMGRESTKFWLREYLNFLFEKNAELEDNDDEFYDHLYESFLKSPEFSFWRNDIVFDNKSDEETIIFAFRFTIGLTNLT 635 (868)
T ss_pred CcccCcccchhHHHHHHHHHhhhcccccCCCcchhhhhHHHHhcccccccCccceEeccCCCCCceEEEEEEEEEEeccC
Confidence 444555555899999999864432 22233454442 111 113 1 235677899999999999999
Q ss_pred CCcchh-hHhhhhhhhcCC-Cc-----ChhHHH-----------------------------------------------
Q psy8507 71 NPVDKS-LIKHNRLVSRDG-II-----NPKLLL----------------------------------------------- 96 (197)
Q Consensus 71 ~~~~~~-~~~~~r~v~~~~-~i-----~p~~f~----------------------------------------------- 96 (197)
++.++. ++.++|.++++. .. +|.+.|
T Consensus 636 ~~~~~~~~~~~~R~ia~~~~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~~~~~~it~si~SI~ 715 (868)
T KOG1934|consen 636 KWNERTRLLETWRKIADEYSDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPNPLCVFWITLSIVSIN 715 (868)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhee
Confidence 999884 899999999765 22 777655
Q ss_pred -----HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccC--ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy8507 97 -----VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIG--NRDRRVRLSIEHMYSVVLHAGLILLVAISILAF 169 (197)
Q Consensus 97 -----~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~--~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~f 169 (197)
+|++||++||||||++++|||||||||+|||||||+.+.+ ++++|+++||+.+||||+||++||+||++||++
T Consensus 716 ~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~ 795 (868)
T KOG1934|consen 716 IGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLF 795 (868)
T ss_pred ehHhhhhHHhcCCccHHHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 566999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhcC
Q psy8507 170 SEFQFILRIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 170 s~s~~~~~~FF~~~~~vi~~G~~hGLvl 197 (197)
+++|++++| ||++++++.+|++|||++
T Consensus 796 V~sYmv~vF-~KTv~LVv~~GllHGLv~ 822 (868)
T KOG1934|consen 796 VPSYMVQVF-FKTVVLVVTLGLLHGLVF 822 (868)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999986 799999999999999985
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=1.9e-35 Score=288.35 Aligned_cols=182 Identities=25% Similarity=0.424 Sum_probs=150.3
Q ss_pred ccccchHHHHHHHHhhhhhhhHhhh----cc----cccc-cc--c------C-CCCChhhHHHhhhhhhccCCCCCcch-
Q psy8507 15 PGNFWLELFRDWLLGLQESFDKDYA----AG----CITQ-ER--W------F-PNASESSILAYKLLVQTGRVDNPVDK- 75 (197)
Q Consensus 15 ~~~~WL~~~~~wl~~lq~~fD~~~~----~~----~i~~-~~--w------~-~n~~~~~ila~r~~iqt~~~~~~~~~- 75 (197)
+.++||+.|.+|++.++....++.+ .. +++. +. | . .+.....|-|+|+.+|..+..++.++
T Consensus 530 ~t~~WL~~y~~~l~~~~~~~~~~~~~~~~~~~l~~FL~~~~~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~ 609 (798)
T PF02460_consen 530 STSFWLRDYLNFLNSINSSFQDDNDKEFFYNLLPEFLNSPEYRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRI 609 (798)
T ss_pred cchhhHHHHHHHHhhccccccccccceeeeccchhhhccccccccccccccccccCCccceeeEEEEEEccCCCCHHHHH
Confidence 3389999999999765544444333 11 1211 11 3 1 23557789999999998888888777
Q ss_pred hhHhhhhhhhcCCC-c-----ChhHHH----------------------------------------------------H
Q psy8507 76 SLIKHNRLVSRDGI-I-----NPKLLL----------------------------------------------------V 97 (197)
Q Consensus 76 ~~~~~~r~v~~~~~-i-----~p~~f~----------------------------------------------------~ 97 (197)
+++.+.|.++++.+ . +|.+.| +
T Consensus 610 ~~~~~~R~i~~~~~~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~ 689 (798)
T PF02460_consen 610 EAMKDWRQIADKYSDFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGF 689 (798)
T ss_pred HHHHHHHHhhhcceecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Confidence 58899999988552 2 554433 9
Q ss_pred HHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhH
Q psy8507 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFIL 176 (197)
Q Consensus 98 M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~ 176 (197)
|++||++||++|+++++||||+|||||+||+|+|+.+.+ ++++|+++||+++|+||+||++||++|++||+|+++|+++
T Consensus 690 m~~~g~~l~~vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~~ 769 (798)
T PF02460_consen 690 MSLWGVDLDPVSMVNLIMSIGFSVDFSAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIFR 769 (798)
T ss_pred hhccccCcchHHHHHHHHHhchhhHHHHHHHHHheecccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999998 6679999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q psy8507 177 RIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 177 ~~FF~~~~~vi~~G~~hGLvl 197 (197)
+ |||++++++++|++||||+
T Consensus 770 ~-ff~~~~l~~~~~~~hglv~ 789 (798)
T PF02460_consen 770 V-FFKTVFLVIIFGLLHGLVF 789 (798)
T ss_pred H-HHHHHHHHHHHHHHHHHHH
Confidence 6 5799999999999999985
No 5
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.96 E-value=1.4e-30 Score=264.35 Aligned_cols=142 Identities=28% Similarity=0.368 Sum_probs=125.9
Q ss_pred hHHHhhhhhhccCCCCCcch-hhHhhhhhhhcC----CCc-----ChhH-HH----------------------------
Q psy8507 56 SILAYKLLVQTGRVDNPVDK-SLIKHNRLVSRD----GII-----NPKL-LL---------------------------- 96 (197)
Q Consensus 56 ~ila~r~~iqt~~~~~~~~~-~~~~~~r~v~~~----~~i-----~p~~-f~---------------------------- 96 (197)
.|.|+||..++.+..+..|. +++++.|.++++ ..+ +|.+ ||
T Consensus 989 ~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~ 1068 (1204)
T TIGR00917 989 IIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVL 1068 (1204)
T ss_pred eEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999998888777 589999999872 211 2222 22
Q ss_pred ------------------------HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc-CChhHHHHHHHHHHhH
Q psy8507 97 ------------------------VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYS 151 (197)
Q Consensus 97 ------------------------~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~-~~~~~R~~~aL~~~G~ 151 (197)
+|++||++||+||+++|+||||+||||++||+|+|..+. +++++|+++||++||+
T Consensus 1069 l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~~vg~ 1148 (1204)
T TIGR00917 1069 LGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGS 1148 (1204)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999874 4677999999999999
Q ss_pred HHHHH-HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhhhhcC
Q psy8507 152 VVLHA-GLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 152 pVl~g-a~ST~lgv~~L~fs~s~~~~~~FF~~~~~vi~~G~~hGLvl 197 (197)
||++| .+||++|++||+|++||+|++|||+|+++++++|++|||||
T Consensus 1149 ~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvf 1195 (1204)
T TIGR00917 1149 SVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVF 1195 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 57889999999999999999999999999999999999985
No 6
>KOG1933|consensus
Probab=99.70 E-value=1.2e-18 Score=175.83 Aligned_cols=101 Identities=35% Similarity=0.485 Sum_probs=97.1
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCC-hhHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhccccch
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGN-RDRRVRLSIEHMYSVVLHA-GLILLVAISILAFSEFQF 174 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~-~~~R~~~aL~~~G~pVl~g-a~ST~lgv~~L~fs~s~~ 174 (197)
+|++|||.+|++|++|++|++|++|||++||.++|.++.+. +.+|+++++.++|+.++.| .++.+.|+++|+|+++.+
T Consensus 1064 ~m~~~~I~~NavS~vNlvm~vgi~vef~~hi~~sf~~s~~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i 1143 (1201)
T KOG1933|consen 1064 FMYLWGISLNAVSLVNLVMSVGIAVEFCVHITHSFATSSGPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQI 1143 (1201)
T ss_pred HHHhhceeehhhhhhhhhhhcchhhhHHHHhhcceeeccCCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccE
Confidence 99999999999999999999999999999999999999985 4599999999999999999 777899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcC
Q psy8507 175 ILRIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 175 ~~~~FF~~~~~vi~~G~~hGLvl 197 (197)
+.+|||+|++..++.|++||+|+
T Consensus 1144 ~~~~~f~~~l~~~l~~a~hGlif 1166 (1201)
T KOG1933|consen 1144 FQVFYFRMYLGIVLVGALHGLIF 1166 (1201)
T ss_pred EEEEeehHHHHHHHHHheeeeee
Confidence 99999999999999999999875
No 7
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.21 E-value=3.9e-11 Score=115.59 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=89.4
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccC--ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccch
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIG--NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQF 174 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~--~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~ 174 (197)
+|+++|+++|..+++.+.+.+|++|||+.|+.++|....+ +.++++++|+++.|.||+.+++++.+|..+|.+|+.+.
T Consensus 611 ~~~~~gi~l~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~~~~ 690 (719)
T TIGR00921 611 LMGLRGIPSFLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPI 690 (719)
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCHH
Confidence 9999999999999999999999999999999999986543 45589999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcC
Q psy8507 175 ILRIFFYMLFGIVLVGLLYMVLL 197 (197)
Q Consensus 175 ~~~~FF~~~~~vi~~G~~hGLvl 197 (197)
++.|. .++.+.+++++++.|++
T Consensus 691 ~~~~g-~~~~~~i~~~~~~~l~l 712 (719)
T TIGR00921 691 MRNFG-LVQGIGVLSSLTAALVV 712 (719)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 98864 56666677888888763
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.06 E-value=6.4e-10 Score=107.22 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=84.7
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|+++|+++|.++++..++.+|++|||+.|+...|... .| ++++++++|+++.|.|++.+++||.+|.++|.++++.
T Consensus 237 ~~~~~g~~l~~~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~~ 316 (719)
T TIGR00921 237 IMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFP 316 (719)
T ss_pred HHHHhCCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999999999999999999753 33 4559999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhc
Q psy8507 174 FILRIFFYMLFGIVLVGLLYMVL 196 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hGLv 196 (197)
.++.+- ....+-+++++++.+.
T Consensus 317 ~~~~~g-~~~~~gv~~~~l~~l~ 338 (719)
T TIGR00921 317 MVSEFG-LGLVAGLITAYLLTLL 338 (719)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Confidence 888764 4444445556666543
No 9
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.01 E-value=9.6e-10 Score=107.98 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=84.9
Q ss_pred HHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCC--hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 96 LVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGN--RDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 96 ~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~--~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
.+|++.||++|+.++..-.+.+|++|||+.|+.+.|....+. .+|-...|.++.|.+|+.+++||..|.+.|.||++.
T Consensus 611 ~~M~l~gI~~~~~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S~f~ 690 (727)
T COG1033 611 GLMGLLGIPLTPATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFSPFP 690 (727)
T ss_pred HHHHHhCCchhHHHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCH
Confidence 399999999999999999999999999999999999966543 558889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q psy8507 174 FILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hGL 195 (197)
++..|- .+....++++++-.|
T Consensus 691 i~snfG-ll~~~~il~sl~asl 711 (727)
T COG1033 691 IISNFG-LLTVIGILLSLLASL 711 (727)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 987754 444444555555444
No 10
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=98.83 E-value=1.5e-08 Score=84.76 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc----cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC----IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAF 169 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s----~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~f 169 (197)
+.+|+++|+++|..+++-+++.+|++||++.|+...|.+. ++ ++++-+.++..+.+.|++...++|++|.+||.+
T Consensus 88 ~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~ 167 (192)
T TIGR00916 88 LGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYV 167 (192)
T ss_pred HHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999888753 22 344778999999999999999999999999999
Q ss_pred cccchhHH
Q psy8507 170 SEFQFILR 177 (197)
Q Consensus 170 s~s~~~~~ 177 (197)
++...++.
T Consensus 168 ~~~~~~~~ 175 (192)
T TIGR00916 168 FGGGAIKG 175 (192)
T ss_pred HhhhhHHH
Confidence 98766544
No 11
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=98.66 E-value=7.2e-08 Score=94.96 Aligned_cols=88 Identities=19% Similarity=0.087 Sum_probs=79.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCC---hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGN---RDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~---~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|++.|++|+..|+....+-||++.||.+|+-.+|....+. .+|.+++|+++.|.|++-+++||.+|.+-|.++...
T Consensus 240 ~m~llG~plt~~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~ 319 (727)
T COG1033 240 AMGLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIP 319 (727)
T ss_pred HHHHhCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccH
Confidence 99999999999999999999999999999999999865433 348999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q psy8507 174 FILRIFFYMLF 184 (197)
Q Consensus 174 ~~~~~FF~~~~ 184 (197)
.++.+-.-+..
T Consensus 320 ~i~~~Gi~~si 330 (727)
T COG1033 320 AIKEFGILLSI 330 (727)
T ss_pred HHHHHHHHHHH
Confidence 99886533333
No 12
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=98.63 E-value=4.7e-08 Score=86.27 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=73.3
Q ss_pred HHHhccccchhhH-HHHhhhhcceeeehHHHHhHhhcccC---ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 98 MYLMNIKLNPISC-VLIVNSSGIYIHFISYICLSFLTCIG---NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 98 M~l~gi~Ln~iS~-v~Li~sIG~sVDFtaHI~~~F~~s~~---~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+..+|+++|.++. +..++.+|+++||+.|+...|..... ++++.+++++.+.|.|++.++++|.+|...|.++++.
T Consensus 192 ~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~ltt~~gf~~L~~s~~~ 271 (333)
T PF03176_consen 192 MGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSALTTAIGFGSLLFSPFP 271 (333)
T ss_pred HHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhhhh
Confidence 4566778887654 45578899999999999999976542 3347899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy8507 174 FILRIFFYMLFGIVLVGLL 192 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~ 192 (197)
.++.+- .+..+-++++++
T Consensus 272 ~~~~~G-~~~~~gi~~~~l 289 (333)
T PF03176_consen 272 PLRQFG-LLAAIGILIALL 289 (333)
T ss_pred HHHHHH-HHHHHHHHHHHH
Confidence 888764 333333344443
No 13
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=98.56 E-value=2.1e-07 Score=92.59 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=67.6
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhH
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFIL 176 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~ 176 (197)
+|+++|++||..+++.+.+.+|++|||+.|+.++|....+... . .-.+.|.+|+.+++||.+|...|+||+...+.
T Consensus 756 ~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~--~--~~~~~g~ai~~saltt~~gf~~l~~s~~~~~~ 831 (862)
T TIGR03480 756 AMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN--L--LQSSTARAVFFSALTTATAFGSLAVSSHPGTA 831 (862)
T ss_pred HHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHHhccchh--H--HHhhhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 9999999999999999999999999999999999976543211 1 11467999999999999999999999998877
Q ss_pred HHH
Q psy8507 177 RIF 179 (197)
Q Consensus 177 ~~F 179 (197)
.+-
T Consensus 832 ~~G 834 (862)
T TIGR03480 832 SMG 834 (862)
T ss_pred HHH
Confidence 643
No 14
>PRK09579 multidrug efflux protein; Reviewed
Probab=98.45 E-value=6.3e-07 Score=91.09 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=80.0
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
|++|+++|.+||.+|++.+++++|+.||.+.|+.-.+.+. .| ++.+-+.++..+++.|++.+.+||+++.+|++|.+
T Consensus 373 ~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~ 452 (1017)
T PRK09579 373 LFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLT 452 (1017)
T ss_pred HHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4499999999999999999999999999999998877653 23 44588999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhh
Q psy8507 172 FQFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
...- . ||+-+-.++++|++-++
T Consensus 453 g~~g-~-~~~~l~~~v~~~l~~S~ 474 (1017)
T PRK09579 453 GLTG-A-LFKEFALTLAGAVIISG 474 (1017)
T ss_pred Cchh-h-hHHHHHHHHHHHHHHHH
Confidence 4322 2 24555555666655443
No 15
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=98.41 E-value=1.1e-06 Score=75.98 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=75.6
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc-----cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC-----IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAF 169 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s-----~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~f 169 (197)
+..|++.|+++|..++..+++.+|++||-+.++.-.+... .++.++.+.++..+.+.|++.+.++|+++.+||++
T Consensus 139 ~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~ 218 (246)
T TIGR00966 139 VGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYV 218 (246)
T ss_pred HHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3399999999999999999999999999999987666532 22344778999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhh
Q psy8507 170 SEFQFILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 170 s~s~~~~~~FF~~~~~vi~~G~~hG 194 (197)
....+++- +..++++|++-|
T Consensus 219 ~~g~~~~~-----~a~~~~~Gli~~ 238 (246)
T TIGR00966 219 FGGGVIKD-----FSLALLVGVIVG 238 (246)
T ss_pred hcchHHHH-----HHHHHHHHHHHH
Confidence 97754443 344444454433
No 16
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=98.39 E-value=9.1e-07 Score=89.90 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=77.9
Q ss_pred HHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 96 LVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 96 ~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
.+|+++|++||.+|+.-+++++|+.||.+.|+.-.+.+. .| ++.+-+.++.++++.|++.+.+||+++.+|++|.+.
T Consensus 375 ~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~~g 454 (1025)
T PRK10614 375 AAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454 (1025)
T ss_pred HHHHHhCCChhHHHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 399999999999999999999999999999998444332 23 445778899999999999999999999999999875
Q ss_pred chhHHHHHHHHHHHHHHHhhhhh
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
..- . ||+-+-+++++|++-++
T Consensus 455 ~~g-~-~~~~~~~~~~~~l~~S~ 475 (1025)
T PRK10614 455 LPG-R-LFREFAVTLSVAIGISL 475 (1025)
T ss_pred chh-h-hHHHHHHHHHHHHHHHH
Confidence 421 2 24556666666665443
No 17
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=98.35 E-value=1.8e-06 Score=85.95 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=70.5
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|.+.|.++|.+|++..++.+|++|||+.|+..+|... .| +.++-++++++++|.|++.+++||.+|.+.|.+++..
T Consensus 313 ~~~l~~~~ln~~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 313 FATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 88889999999999999999999999999999988764 23 3346679999999999999999999999999998866
Q ss_pred hhHH
Q psy8507 174 FILR 177 (197)
Q Consensus 174 ~~~~ 177 (197)
.++.
T Consensus 393 ~~~~ 396 (862)
T TIGR03480 393 GVSE 396 (862)
T ss_pred HHHH
Confidence 5443
No 18
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=98.32 E-value=1.6e-06 Score=88.29 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=80.4
Q ss_pred HHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc---C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 96 LVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI---G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 96 ~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~---~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
.+|+++|+++|.+|++.+++++|+.||.+.|+...+.+.. | ++.+-+.++.++++.|++.++++|+++.+|++|.+
T Consensus 381 ~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~stltti~~flPl~~~~ 460 (1037)
T PRK10555 381 SVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1037)
T ss_pred HHHHHhCCChhHHHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3999999999999999999999999999999999987642 3 44588999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhh
Q psy8507 172 FQFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
... -.+ |+-+-+++++|++-++
T Consensus 461 G~~-g~~-~~~l~~~v~~~l~~S~ 482 (1037)
T PRK10555 461 GTT-GAI-YRQFSITIVSAMVLSV 482 (1037)
T ss_pred Cch-hHH-HHHHHHHHHHHHHHHH
Confidence 543 222 4555565666655443
No 19
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.30 E-value=1.6e-06 Score=88.30 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=77.7
Q ss_pred HHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 96 LVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 96 ~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
.+|+++|++||.+|++.+++++|+.||++.|+.-.+.+. .| ++.+-+.++.++++.|++.+.++|+++.+|++|.+
T Consensus 381 ~~~~~~g~~ln~~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~ttltti~~flPl~~~~ 460 (1044)
T TIGR00915 381 AVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1044)
T ss_pred HHHHHhCCChhHHHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 399999999999999999999999999999988877653 23 34477889999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHhhhh
Q psy8507 172 FQFILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~~hG 194 (197)
...- . ||+-+-.++++|++-+
T Consensus 461 G~~g-~-~~~~~~~~i~~~l~~S 481 (1044)
T TIGR00915 461 GSTG-A-IYRQFSITIVSAMALS 481 (1044)
T ss_pred cchH-H-HHHHHHHHHHHHHHHH
Confidence 4332 2 2455555555555443
No 20
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=98.27 E-value=2.2e-06 Score=87.39 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=78.4
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFS 170 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs 170 (197)
|.+|+++|++||.+|++.+++++|+.||.+.|+...+... .| ++.+-+.++..+++.|++.+.++|+++.+||+|.
T Consensus 380 ~~~~~~~g~~ln~~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~tltt~~~f~Pl~~~ 459 (1049)
T PRK15127 380 FAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFF 459 (1049)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4499999999999999999999999999999999998763 24 3447788999999999999999999999999997
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhh
Q psy8507 171 EFQFILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 171 ~s~~~~~~FF~~~~~vi~~G~~hG 194 (197)
+... -.+ |+-+-.++++|++-+
T Consensus 460 ~G~~-g~~-~~~~~~~~~~~l~~S 481 (1049)
T PRK15127 460 GGST-GAI-YRQFSITIVSAMALS 481 (1049)
T ss_pred CCch-HHH-hHHHHHHHHHHHHHH
Confidence 6432 222 355555555555443
No 21
>PRK09577 multidrug efflux protein; Reviewed
Probab=98.24 E-value=2.9e-06 Score=86.33 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=79.3
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
+|.++|++||.+|++-+++++|+.||++.|+...+.+. .| ++.+-+.++..+++.|++.+.++|+++.+|++|.+.
T Consensus 381 ~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~tlt~~~~flPl~~~~g 460 (1032)
T PRK09577 381 VMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGG 460 (1032)
T ss_pred HHHHhcccHHHHHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999988764 23 344778999999999999999999999999999885
Q ss_pred chhHHHHHHHHHHHHHHHhhhhh
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
..-. + |+-+-.++++|++-++
T Consensus 461 ~~g~-~-~~~~~~~v~~~l~~S~ 481 (1032)
T PRK09577 461 AVGN-I-YRQFALSLAVSIGFSA 481 (1032)
T ss_pred cHHH-H-HHHHHHHHHHHHHHHH
Confidence 5433 2 4555555556655443
No 22
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=98.23 E-value=4.2e-06 Score=84.17 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=68.5
Q ss_pred HHHHhccc----cchhhHHHH-hhhhcceeeehHHHHhHhhccc---CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy8507 97 VMYLMNIK----LNPISCVLI-VNSSGIYIHFISYICLSFLTCI---GNRDRRVRLSIEHMYSVVLHAGLILLVAISILA 168 (197)
Q Consensus 97 ~M~l~gi~----Ln~iS~v~L-i~sIG~sVDFtaHI~~~F~~s~---~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~ 168 (197)
+|++.|.. +|..+.+.+ ++.+|+++||+.|+...|.... +++++.+++++++.|.||+.++++|.+|.++|.
T Consensus 217 ~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~ 296 (910)
T TIGR00833 217 IVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALS 296 (910)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888875 455555544 7789999999999999997643 234578999999999999999999999999999
Q ss_pred ccccchhHHHH
Q psy8507 169 FSEFQFILRIF 179 (197)
Q Consensus 169 fs~s~~~~~~F 179 (197)
+++..+++.+-
T Consensus 297 ~~~~~~~~~~G 307 (910)
T TIGR00833 297 LARLPSFKTLG 307 (910)
T ss_pred HccChHHHHHH
Confidence 99988776653
No 23
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=98.16 E-value=5.5e-06 Score=76.63 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=75.6
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc--C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI--G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~--~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|++.|..||..++.-+++++|++||.++++.-.+.... + +.++-+.++..+.++|++.+.+||+++.++|.+....
T Consensus 290 ~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g 369 (397)
T TIGR01129 290 ILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTG 369 (397)
T ss_pred HHHHHCCCccHHHHHHHHHHhheeeeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999988776432 2 3346788999999999999999999999999986655
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q psy8507 174 FILRIFFYMLFGIVLVGLLY 193 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~h 193 (197)
.++-| -.++.+-+++|++-
T Consensus 370 ~~~~f-A~tl~igii~s~~~ 388 (397)
T TIGR01129 370 PVKGF-AVTLAIGIIASLFT 388 (397)
T ss_pred chhHH-HHHHHHHHHHHHHH
Confidence 55443 33333334444443
No 24
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.14 E-value=4.7e-06 Score=84.95 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc--C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI--G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~--~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
|.+|+++|+++|.+|+..+++++|+.||.+.|+.-.+.+.. | ++.+.+.++..+++.|++.+.+||+++.+|++|++
T Consensus 383 ~~~l~~~g~~ln~~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~tltti~~f~Pl~~~~ 462 (1040)
T PRK10503 383 FAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462 (1040)
T ss_pred HHHHHHhCCCHHHHHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34999999999999999999999999999999998887643 3 23477788889999999999999999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhh
Q psy8507 172 FQFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
.-. -. ||+-+-.++.+|++-.+
T Consensus 463 g~~-G~-~~~~~~~~v~~~l~~S~ 484 (1040)
T PRK10503 463 DIV-GR-LFREFAVTLAVAILISA 484 (1040)
T ss_pred ccH-HH-HHHHHHHHHHHHHHHHH
Confidence 522 22 24555555566655443
No 25
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=98.11 E-value=1e-05 Score=71.87 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=71.6
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc-----cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC-----IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s-----~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
+|.+.|+++|..+++.+++.+|++||.+.|+.-.+... .++.+|.+.+|..+.+.|++...+||++|++||.+..
T Consensus 170 ~~~l~g~~l~~~siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g 249 (289)
T PRK13022 170 IFSLFQIEFDLTVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFG 249 (289)
T ss_pred HHHHHCCcccHHHHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998777532 2344588899999999999999999999999999998
Q ss_pred cchhHHH
Q psy8507 172 FQFILRI 178 (197)
Q Consensus 172 s~~~~~~ 178 (197)
...++-+
T Consensus 250 ~~~i~~f 256 (289)
T PRK13022 250 GGTLHDF 256 (289)
T ss_pred chhHHHH
Confidence 7665554
No 26
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=98.02 E-value=1.6e-05 Score=80.59 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=80.2
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc----cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC----IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFS 170 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s----~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs 170 (197)
|.+|+++|++||.+|+.-|++|+|+-||=+.=+.-..++. .+++.+-+.++..+++.|++-+.+||++..+|++|.
T Consensus 373 ~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~Pl~f~ 452 (1021)
T PF00873_consen 373 FIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFLPLLFM 452 (1021)
T ss_dssp HHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGS
T ss_pred HHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4499999999999999999999999999999888777543 233457789999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhh
Q psy8507 171 EFQFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 171 ~s~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
+... -. ||+-+..+++++++-.|
T Consensus 453 ~G~~-g~-~~~~l~~~v~~al~~Sl 475 (1021)
T PF00873_consen 453 PGIA-GQ-FFRPLALTVIIALIASL 475 (1021)
T ss_dssp BHHH-HH-HHHHHHHHHHHHHHHHH
T ss_pred CCch-HH-HHHHHHHHHHHHHHHHH
Confidence 8544 33 34666666666655443
No 27
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.99 E-value=1.8e-05 Score=78.70 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=77.9
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|+++|..||..++.-+++++|++||.++.+.-.+... .++.++.+.++..+.++|++.+.+||+++.+||.+....
T Consensus 320 ~l~l~g~~Lnl~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g 399 (758)
T PRK13023 320 VLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSG 399 (758)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999998887532 234458899999999999999999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q psy8507 174 FILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hG 194 (197)
.++-| ..++++-++.+++-.
T Consensus 400 ~ik~F-AitliiGi~~S~~~a 419 (758)
T PRK13023 400 TVHGF-ALTVAIGIGTTLFTT 419 (758)
T ss_pred hHHHH-HHHHHHHHHHHHHHH
Confidence 65553 344444344444433
No 28
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=97.94 E-value=8.2e-05 Score=60.15 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=72.8
Q ss_pred HHHHHHhccccchhhH-HHHhhhhcceeeehHHHHhHhhcccCCh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 95 LLVMYLMNIKLNPISC-VLIVNSSGIYIHFISYICLSFLTCIGNR--DRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~-v~Li~sIG~sVDFtaHI~~~F~~s~~~~--~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
+++.++.|+++++++. +.-...+|+++|...++++++.++..+. ++|+.+|+++.|++++...++++.+....++++
T Consensus 24 ~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~~G~si~~t~l~~~~af~~~~~~~ 103 (153)
T PF12349_consen 24 LGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSRVGPSILLTSLTEIVAFLIGAFSP 103 (153)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 5578899999999986 5556778999999999999999876544 599999999999999999999999999888888
Q ss_pred cchhHHH
Q psy8507 172 FQFILRI 178 (197)
Q Consensus 172 s~~~~~~ 178 (197)
..-++.|
T Consensus 104 ~~~l~~F 110 (153)
T PF12349_consen 104 VPALREF 110 (153)
T ss_pred hHHHHHH
Confidence 7776654
No 29
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=97.91 E-value=3.6e-05 Score=68.51 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=58.1
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFS 170 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs 170 (197)
+|+++|+++|..+++.+++.+|++||.+.++...+....++.+|.+.++++. + +...+||++|++||.+.
T Consensus 178 ~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~dri~~~~~~~~eai~~a~~~-~---i~tslTTl~~~lpL~l~ 247 (292)
T PRK08578 178 LMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLKRRGTFDESIKRAMRT-G---ITMTLTTIAAMAVLYIV 247 (292)
T ss_pred HHHHHCccccHHHHHHHHHHHheeecCcEEEehHHHHccCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877765545555778888743 3 34579999999999864
No 30
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=97.87 E-value=5.7e-05 Score=71.92 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=74.5
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|++.|+.||..+..-+++++|++||.++.+.-.+... ..+.++-+..+..+.+.|++.+.+||+++.++|.+....
T Consensus 375 ~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g 454 (498)
T PRK05812 375 VLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTG 454 (498)
T ss_pred HHHHHCCCchHHHHHHHHHhheeEEeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999888777542 223346788999999999999999999999999986655
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy8507 174 FILRIFFYMLFGIVLVGLL 192 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~ 192 (197)
.++-| -.++++-++.|++
T Consensus 455 ~i~~f-Aitl~iGii~s~~ 472 (498)
T PRK05812 455 PVKGF-AVTLGIGILTSMF 472 (498)
T ss_pred chhHH-HHHHHHHHHHHHH
Confidence 55543 3333333444443
No 31
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.83 E-value=5.3e-05 Score=75.29 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc---CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI---GNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~---~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|++.|..+|..+.+.+++.+|++||.+.|+.-.+.... ++.++-+.++..+.+.|++.+.+||++|.++|.+....
T Consensus 308 ~l~l~g~~l~l~siaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g 387 (755)
T PRK13024 308 ALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTG 387 (755)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999999999999998886532 23457789999999999999999999999999986655
Q ss_pred hhHHH
Q psy8507 174 FILRI 178 (197)
Q Consensus 174 ~~~~~ 178 (197)
.++-|
T Consensus 388 ~~~~f 392 (755)
T PRK13024 388 PVKGF 392 (755)
T ss_pred hhhhH
Confidence 55543
No 32
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=97.68 E-value=8.7e-05 Score=75.77 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=73.1
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--c-----C------ChhHHHHHHHHHHhHHHHHHHHHHH
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--I-----G------NRDRRVRLSIEHMYSVVLHAGLILL 161 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~-----~------~~~~R~~~aL~~~G~pVl~ga~ST~ 161 (197)
|.+|+++|++||.+|+. .+++|+-||.+..+.-...+. . | ++.+-+.++..+++.|++.+.+||+
T Consensus 383 ~~~m~~~g~sln~~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~stlTti 460 (1051)
T TIGR00914 383 FIGMVFQGISANLMSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQLIIT 460 (1051)
T ss_pred HHHHHHhCCcHHHHHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999985 567899999999876553321 1 1 2225577899999999999999999
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHhhhhhc
Q psy8507 162 VAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVL 196 (197)
Q Consensus 162 lgv~~L~fs~s~~~~~~FF~~~~~vi~~G~~hGLv 196 (197)
++.+|++|.+... -. ||+-+-+++++|++-+++
T Consensus 461 ~~flPl~~~~g~~-g~-~~~~~~~~v~~~l~~Sll 493 (1051)
T TIGR00914 461 LVFLPIFTLTGVE-GK-MFHPMAFTVVLALAGAMI 493 (1051)
T ss_pred HHHHHHHHccchH-HH-HhHHHHHHHHHHHHHHHH
Confidence 9999999877432 22 346666666777665543
No 33
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=97.67 E-value=3.6e-05 Score=78.53 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=65.9
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc--C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI--G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~--~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
.|.++|.+||..|++-+++.+|+.||.+.|+.-.+.... | +.++-+.+|-.....||+.+++||++|.+||+++..
T Consensus 922 ~l~~~g~~l~~~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~ttltti~g~lPl~~~~g 1000 (1051)
T TIGR00914 922 ALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATG 1000 (1051)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 778899999999999999999999999999998776432 2 234667888888999999999999999999999863
No 34
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=97.64 E-value=0.00019 Score=66.94 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=67.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchh
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFI 175 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~ 175 (197)
+|.++|..||-.+.+-+++++|++||-.+.+.....+... +.++-++...++..+|++.+.+||++|.+||++..+..+
T Consensus 305 ~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~~~~~~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~i 384 (417)
T PRK08343 305 FAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLHEGKVPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDL 384 (417)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6789999999999999999999999999988854443322 334557888889999999999999999999998765554
Q ss_pred HHH
Q psy8507 176 LRI 178 (197)
Q Consensus 176 ~~~ 178 (197)
+-|
T Consensus 385 kgf 387 (417)
T PRK08343 385 KGF 387 (417)
T ss_pred cch
Confidence 443
No 35
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=97.64 E-value=0.00013 Score=73.47 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=78.4
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc--C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI--G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~--~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|+++|..||..+..-++++||++||-++.|.-...... + +..+-+..+.++.+.|++.+.+||+++.++|.+-...
T Consensus 414 ~l~l~g~tLnl~~IaGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~ 493 (855)
T PRK14726 414 VLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSG 493 (855)
T ss_pred HHHHhCcceeHHHHHHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 899999999999999999999999999999988776532 2 3336688999999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q psy8507 174 FILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hG 194 (197)
.++-| ..++.+-++.+++-.
T Consensus 494 ~ikgF-Avtl~igii~Sl~~A 513 (855)
T PRK14726 494 AVRGF-AVTLAVGILTTVFTA 513 (855)
T ss_pred chHHH-HHHHHHHHHHHHHHH
Confidence 76654 344444445555443
No 36
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=97.59 E-value=0.00018 Score=73.71 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=72.3
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHH----hHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYIC----LSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFS 170 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~----~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs 170 (197)
|.+|+++|.+||-+|+..|++|||+-||=+.-+. ++ +. ..+..+-+.++.++++.|++.+.++++...+|++|.
T Consensus 371 f~~m~~~GfslN~lTL~aLiLAiGllVDDAIVVvENI~R~-~~-G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~ 448 (1009)
T COG0841 371 FAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVVVENIERH-MR-GLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFM 448 (1009)
T ss_pred HHHHHHhCccchHhHHHHHHHhhheeEeccEEEEeeEEee-cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4499999999999999999999999999876433 32 33 334458899999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHh
Q psy8507 171 EFQFILRIFFYMLFGIVLVGL 191 (197)
Q Consensus 171 ~s~~~~~~FF~~~~~vi~~G~ 191 (197)
+.-.- .| |+-+.+++.+++
T Consensus 449 ~G~~G-~~-f~~f~~tia~a~ 467 (1009)
T COG0841 449 GGSTG-EL-FRQFAITIAVAM 467 (1009)
T ss_pred CCcHH-HH-HHHHHHHHHHHH
Confidence 96432 22 344444444443
No 37
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=97.58 E-value=0.00033 Score=58.74 Aligned_cols=100 Identities=19% Similarity=0.110 Sum_probs=75.2
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc-----cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC-----IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAF 169 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s-----~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~f 169 (197)
+.+|++.|+++|.-+...+++.+|.|||-+.=+.-..... .++.++.+.+++.+.....+.+.++|++.+++|.+
T Consensus 72 l~~~~~~~~~l~l~~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~ 151 (189)
T PF02355_consen 72 LGIFSLFGIELTLPSIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFF 151 (189)
T ss_dssp HHHHHHHT-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcccHHHHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999998877666544 22334888999999999999999999999999988
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhh
Q psy8507 170 SEFQFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 170 s~s~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
-....++.|- .++++-++.|++..+
T Consensus 152 ~g~~~l~~Fa-~~l~iGvi~~~~ss~ 176 (189)
T PF02355_consen 152 FGGGSLKGFA-LTLIIGVIIGTYSSL 176 (189)
T ss_dssp C--CHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hccchHHHHH-HHHHHHHHHHHHHHH
Confidence 8877777654 444444555555443
No 38
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=97.53 E-value=0.0004 Score=72.30 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=67.7
Q ss_pred HHHHHHHhccccchh-hHHHHhhhhcceeeehHHHHhHhhccc----C---------ChhHHHHHHHHHHhHHHHHHHHH
Q psy8507 94 LLLVMYLMNIKLNPI-SCVLIVNSSGIYIHFISYICLSFLTCI----G---------NRDRRVRLSIEHMYSVVLHAGLI 159 (197)
Q Consensus 94 ~f~~M~l~gi~Ln~i-S~v~Li~sIG~sVDFtaHI~~~F~~s~----~---------~~~~R~~~aL~~~G~pVl~ga~S 159 (197)
.+++|++.|++++++ +.+.=.+.+|++||..-.+.++|.+.. + +.++|+.++|+++|.||+..++|
T Consensus 622 s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt 701 (1204)
T TIGR00917 622 SVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLS 701 (1204)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 477999999999976 555545555666797666666665421 1 34599999999999999999999
Q ss_pred HHHHHHHhhccccchhHHH
Q psy8507 160 LLVAISILAFSEFQFILRI 178 (197)
Q Consensus 160 T~lgv~~L~fs~s~~~~~~ 178 (197)
+.+|.+..++++..-++.|
T Consensus 702 ~~~aF~~g~~s~~Pavr~F 720 (1204)
T TIGR00917 702 ESLAFFLGALSKMPAVRAF 720 (1204)
T ss_pred HHHHHHHHhccCChHHHHH
Confidence 9999999999998887764
No 39
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=97.47 E-value=0.00054 Score=69.20 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=64.2
Q ss_pred ccccch-hhHHHHhhhhcceeeehHHHHhHhhcccCC-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy8507 102 NIKLNP-ISCVLIVNSSGIYIHFISYICLSFLTCIGN-RDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFILRIF 179 (197)
Q Consensus 102 gi~Ln~-iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~-~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~~~F 179 (197)
|..++. ++.+..++-+|+++||++|+...|....+. .++.+..++.+.|.||+.+++++..+...|.+++...++.+-
T Consensus 798 g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~s~~~~l~~~G 877 (910)
T TIGR00833 798 GAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAGLVFAGTMAALASAQLTAIAQFG 877 (910)
T ss_pred CCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344554 555656777999999999999999865422 346789999999999999999999999999999988777654
Q ss_pred HH
Q psy8507 180 FY 181 (197)
Q Consensus 180 F~ 181 (197)
+-
T Consensus 878 ~~ 879 (910)
T TIGR00833 878 FT 879 (910)
T ss_pred HH
Confidence 33
No 40
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=97.44 E-value=0.00019 Score=73.44 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=78.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
.|.++|.+||..|++-+++.+|+.||-+..+.-..... .| +..+-+.+|-.....||+..++||++|++||+++..
T Consensus 915 ~l~~~g~~l~~~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIlmTtlTti~gllPl~l~~G 994 (1049)
T PRK15127 915 AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSG 994 (1049)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999999999998887766532 23 344778999999999999999999999999999864
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhc
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYMVL 196 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hGLv 196 (197)
.-- . +++-+..+++.|++-+.+
T Consensus 995 ~g~-~-~~~plai~ii~GL~~St~ 1016 (1049)
T PRK15127 995 AGS-G-AQNAVGTGVMGGMVTATV 1016 (1049)
T ss_pred CCH-H-HhcCchhhhhHHHHHHHH
Confidence 321 2 245566667777665543
No 41
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=97.42 E-value=0.00044 Score=68.55 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=76.5
Q ss_pred HHHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCCh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 94 LLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNR--DRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 94 ~f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~--~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
.|+++.+.|++.+++..+.--+.+|++||-.-.+.++|.+..... +||+.+++++.|.++.-.++|..++..+-++++
T Consensus 266 ~~Gl~~~~G~~~~~i~~v~PFLvlgIGvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~ 345 (798)
T PF02460_consen 266 SFGLLSLFGVPFNPIVLVIPFLVLGIGVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITP 345 (798)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHHHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 377999999999999999888899999999999999998776543 499999999999999999999999999999999
Q ss_pred cchhHHH
Q psy8507 172 FQFILRI 178 (197)
Q Consensus 172 s~~~~~~ 178 (197)
...++.|
T Consensus 346 ~pav~~F 352 (798)
T PF02460_consen 346 IPAVRSF 352 (798)
T ss_pred cHHHHHH
Confidence 9887764
No 42
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=97.27 E-value=0.00094 Score=65.06 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=75.8
Q ss_pred HHHHh-ccccchhhHHHHhhhhcceeeehHHHHhHhh---cccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLM-NIKLNPISCVLIVNSSGIYIHFISYICLSFL---TCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~-gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~---~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
+|+++ |..||-.+..-+++++|++||-.+=|.-.-. ...++..+-+..+..+..+|++.+.+||+++.++|.+-..
T Consensus 482 vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Gg 561 (604)
T PRK12933 482 LLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGN 561 (604)
T ss_pred HHHHHhCCcccHHHHHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89998 9999999999999999999999986554442 2222344778899999999999999999999999988887
Q ss_pred chhHHHHHHHHHHHHHHHhhhhh
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
-.++-| ..++.+-++.+++-++
T Consensus 562 g~ikgF-AvTL~iGIl~S~ftAi 583 (604)
T PRK12933 562 GPIQGF-ALTLGLGLLTSMFTGI 583 (604)
T ss_pred ccchHH-HHHHHHHHHHHHHHHH
Confidence 666654 3444444555555443
No 43
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=97.27 E-value=0.00085 Score=69.57 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHHHhccccchhh-HHHHhhhhcceeeehHHHHhHhhcccC--ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy8507 94 LLLVMYLMNIKLNPIS-CVLIVNSSGIYIHFISYICLSFLTCIG--NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFS 170 (197)
Q Consensus 94 ~f~~M~l~gi~Ln~iS-~v~Li~sIG~sVDFtaHI~~~F~~s~~--~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs 170 (197)
.++++++.|++.|++. .|.=-+.+|++||..-++.++|.+... +-++|+.++|.++|.+|+..++|+.++..+.+++
T Consensus 444 s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g~SI~~tslt~~~aF~~ga~t 523 (1145)
T TIGR00918 444 GLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTGASVVLTSISNVTAFFMAALI 523 (1145)
T ss_pred HHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhcceeeHHHHHHHHHHHHHhcC
Confidence 4779999999999985 666677899999999999999976543 2349999999999999999999999999999999
Q ss_pred ccchhHHH
Q psy8507 171 EFQFILRI 178 (197)
Q Consensus 171 ~s~~~~~~ 178 (197)
+..-++.|
T Consensus 524 ~~Pavr~F 531 (1145)
T TIGR00918 524 PIPALRAF 531 (1145)
T ss_pred CCHHHHHH
Confidence 98877764
No 44
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=97.24 E-value=0.00054 Score=70.14 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=77.2
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
.+.++|.+||..|++-+++.+|+.|+-+.++.-.+... +| +.++-+.+|-..-..||+..++||++|++||+++...
T Consensus 914 ~l~~~g~~l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmTtltti~gllPla~~~g~ 993 (1044)
T TIGR00915 914 ATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMTSLAFILGVVPLAISTGA 993 (1044)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhcCC
Confidence 67779999999999999999999999999988876533 23 3447788888999999999999999999999997532
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhc
Q psy8507 174 FILRIFFYMLFGIVLVGLLYMVL 196 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hGLv 196 (197)
--. +++-+-.+++.|++-+.+
T Consensus 994 -g~~-~~~plai~vigGL~~st~ 1014 (1044)
T TIGR00915 994 -GSG-SQHAIGTGVFGGMVTATV 1014 (1044)
T ss_pred -ChH-HhCccHHHHHHHHHHHHH
Confidence 112 245566667777765543
No 45
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.18 E-value=0.0015 Score=65.02 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=77.8
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc-----CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-----GNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~-----~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
+|++.|+++|...+..+++.+|+|||.++++--.+.... ++-++.+..++.+.+.+.+...+||++++++|.+..
T Consensus 620 ~~~l~~~~~~~~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts~tt~~~~~~L~~~g 699 (755)
T PRK13024 620 FFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTLLVLLALLIFG 699 (755)
T ss_pred HHHHhcceEcHHHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988886532 223477889999999999999999999999999887
Q ss_pred cchhHHHHHHHHHHHHHHHhh
Q psy8507 172 FQFILRIFFYMLFGIVLVGLL 192 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~~ 192 (197)
...++-|-+.+++. ++.|..
T Consensus 700 ~~~i~~fa~~l~iG-ii~g~~ 719 (755)
T PRK13024 700 GSSLRNFSLALLVG-LIVGTY 719 (755)
T ss_pred CchHHHHHHHHHHH-HHHHHH
Confidence 77777754443333 445544
No 46
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.08 E-value=0.0011 Score=69.10 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=72.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
+|.++|+.||..++.-++++||++||-++-|.-..... .++..+-+..+..+..+|++.+.+||+++.++|.+....
T Consensus 951 ~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILdTnLTTLIA~lPLf~fGtG 1030 (1403)
T PRK12911 951 ALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTG 1030 (1403)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999999999998777554332 223347788999999999999999999999999665554
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy8507 174 FILRIFFYMLFGIVLVGLL 192 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~ 192 (197)
.++-| ..++++-++.|++
T Consensus 1031 ~vkgF-AvTLiIGII~Smf 1048 (1403)
T PRK12911 1031 PIKGF-ALTLIIGIFSSMF 1048 (1403)
T ss_pred ccccH-HHHHHHHHHHHHH
Confidence 44543 2333333344443
No 47
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=97.08 E-value=0.0017 Score=66.57 Aligned_cols=98 Identities=15% Similarity=0.033 Sum_probs=72.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhh---cccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFL---TCIG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~---~s~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
.|.+.|.+||..|++-+++.+|+.||-+.=+.-... +..| +.+|-+.+|-+....||+..++||++|.+||+++..
T Consensus 908 ~l~l~g~~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTtltti~gllPlal~~G 987 (1040)
T PRK10503 908 ALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTG 987 (1040)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999996655443332111 1234 345788999999999999999999999999999863
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhc
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYMVL 196 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hGLv 196 (197)
.- -- +++-+..+++.|++-+.+
T Consensus 988 ~g-~e-~~~pla~~ii~GL~~St~ 1009 (1040)
T PRK10503 988 VG-AE-LRRPLGICMVGGLIVSQV 1009 (1040)
T ss_pred CC-hH-HhCcchHHHHHHHHHHHH
Confidence 31 12 246666667777665543
No 48
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=96.91 E-value=0.0022 Score=65.72 Aligned_cols=98 Identities=10% Similarity=-0.030 Sum_probs=75.2
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhc--ccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLT--CIG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~--s~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
.|.+.|.+||..+++-+++.+|+.|+-+.=+.-.... ..| +.++-+.+|-.....||+..++||++|++||+++...
T Consensus 913 ~L~i~g~~l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmTtltti~gllPlal~~g~ 992 (1037)
T PRK10555 913 ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGA 992 (1037)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 7888999999999999999999999987655443332 222 3457788899999999999999999999999998643
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhc
Q psy8507 174 FILRIFFYMLFGIVLVGLLYMVL 196 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hGLv 196 (197)
-- . +++-+-.+++.|++-+.+
T Consensus 993 g~-~-~~~pla~~ii~GL~~St~ 1013 (1037)
T PRK10555 993 GS-G-SQHAVGTGVMGGMISATI 1013 (1037)
T ss_pred Ch-H-HhcccHHHHHHHHHHHHH
Confidence 21 2 246666667777766543
No 49
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=96.63 E-value=0.0084 Score=53.81 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=71.6
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc----C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI----G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~----~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
++.+.|.++|.-+.+-+++-+|.||+-+.=+--.+.... + +.+|-+.+|....-.|++..++||++|++||++.-
T Consensus 169 ~l~l~g~~l~~~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G 248 (297)
T PRK13021 169 FFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMG 248 (297)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999998876655554221 1 33477889999999999999999999999999876
Q ss_pred cchhHHHHHHHHHHHHHHHhhhh
Q psy8507 172 FQFILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~~hG 194 (197)
....+-| ...++.|++-|
T Consensus 249 ~~~~~~f-----A~~li~Gli~g 266 (297)
T PRK13021 249 GGPLEGF-----SIAMFIGILTG 266 (297)
T ss_pred hhhHHHH-----HHHHHHHHHHH
Confidence 5555543 33344554443
No 50
>PRK09577 multidrug efflux protein; Reviewed
Probab=96.37 E-value=0.0052 Score=63.03 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=72.1
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc--cC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s--~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
.+.+.|.+||..+++-+++.+|+.|+-+.++.-..... +| +.++-+.+|-..-..||+..++||++|++||+++.-.
T Consensus 909 ~l~l~g~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlmTtltti~gllPla~~~g~ 988 (1032)
T PRK09577 909 GVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGA 988 (1032)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHccCC
Confidence 45556999999999999999999999988877655432 22 3447788888999999999999999999999998532
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q psy8507 174 FILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~hG 194 (197)
=-. +.+-+-.+++.|++-+
T Consensus 989 g~~--~~~pla~~iigGL~~s 1007 (1032)
T PRK09577 989 ASG--AQIAIGTGVLGGVITA 1007 (1032)
T ss_pred ChH--HhcCchhhhhhhHHHH
Confidence 111 1344555556665544
No 51
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=96.25 E-value=0.018 Score=58.43 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=67.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc----C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI----G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~----~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
+|++.|+++|..+.+.+++-+|+||+.+..+.-.+.... + +-.+....++.....-++..++||++|+++|++..
T Consensus 715 ~~~l~g~~ls~~~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~TslTTll~llpL~l~G 794 (855)
T PRK14726 715 LFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATTLLALLALYLFG 794 (855)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999988875322 2 11256667777777779999999999999999986
Q ss_pred cchhHHH
Q psy8507 172 FQFILRI 178 (197)
Q Consensus 172 s~~~~~~ 178 (197)
....+.|
T Consensus 795 ~~~i~~f 801 (855)
T PRK14726 795 GEVIRSF 801 (855)
T ss_pred chhHHHH
Confidence 6655554
No 52
>PRK09579 multidrug efflux protein; Reviewed
Probab=96.07 E-value=0.0076 Score=61.76 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=61.4
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhh---cccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFL---TCIG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~---~s~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
.+.+.|.+||..+++-+++.+|+.|+-+.-+...+. ...| +.++-+.+|-.....||+..++||++|++||++..
T Consensus 888 ~L~i~~~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTtlTti~gllPla~~~ 966 (1017)
T PRK09579 888 PLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTTAAMVFGMVPLILAT 966 (1017)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 556778899999999999999999999985544332 2233 34577888999999999999999999999999974
No 53
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=95.86 E-value=0.023 Score=57.92 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=74.8
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cCC-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IGN-RDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~~-~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
.+.+.|.+||..|++-+++-+|+.|.-+.=+.-.+... .|. ..|-+.+|-..-..||+..++||++|++||+++..
T Consensus 906 ~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTtlTti~G~lPla~~~g 985 (1021)
T PF00873_consen 906 GLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILMTTLTTILGMLPLALGIG 985 (1021)
T ss_dssp HHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccccccC
Confidence 77888999999999999999999998887666555432 233 33777888888889999999999999999999875
Q ss_pred chhHHHHHHHHHHHHHHHhhhhh
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYMV 195 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hGL 195 (197)
.=-. +.+-+..+++.|++-+.
T Consensus 986 ~g~~--~~~pla~~iigGL~~st 1006 (1021)
T PF00873_consen 986 EGAE--FWQPLAIVIIGGLLFST 1006 (1021)
T ss_dssp TTHH--HHHHHHHHHHHHHHHHH
T ss_pred CCcc--ccCchhhHHHHHHHHHH
Confidence 3211 34667777788876654
No 54
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=95.55 E-value=0.021 Score=58.56 Aligned_cols=96 Identities=15% Similarity=0.016 Sum_probs=70.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhc--cc-C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLT--CI-G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~--s~-~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
.+.++|.+||-.|++-+++.+|+.|+-+.=+.-.+.. .. | +.++-+.+|-..-..||+..++||++|++||+++..
T Consensus 894 ~L~l~g~~l~~~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTtlTti~GllPlal~~g 973 (1025)
T PRK10614 894 ALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGG 973 (1025)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 7778899999999999999999999877665433221 12 2 334667778888889999999999999999999753
Q ss_pred chhHHHHHHHHHHHHHHHhhhh
Q psy8507 173 QFILRIFFYMLFGIVLVGLLYM 194 (197)
Q Consensus 173 ~~~~~~FF~~~~~vi~~G~~hG 194 (197)
.=- . +++-+-.+++.|++-+
T Consensus 974 ~g~-~-~~~pmAi~iigGL~~s 993 (1025)
T PRK10614 974 DGA-E-LRQPLGITIVGGLVMS 993 (1025)
T ss_pred CCH-H-HhCCchhhhhhHHHHH
Confidence 211 1 2355555666666554
No 55
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=94.35 E-value=0.096 Score=50.33 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=71.6
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccC---ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIG---NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~---~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
.|++.|..|+-=+..-+|.+||++||--+=|.-.-....+ +....+....++-.+.|+.+.+||+++.++|..--+-
T Consensus 385 vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG 464 (506)
T COG0342 385 VLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTG 464 (506)
T ss_pred HHHHhcccccchhhhHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccC
Confidence 8899999999999999999999999987766655443222 2235566678899999999999999999999877777
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy8507 174 FILRIFFYMLFGIVLVGLL 192 (197)
Q Consensus 174 ~~~~~FF~~~~~vi~~G~~ 192 (197)
-++=| -.++.+=++.+++
T Consensus 465 ~vKGF-A~Tl~lGi~~smf 482 (506)
T COG0342 465 PVKGF-AVTLILGILTSMF 482 (506)
T ss_pred CchHH-HHHHHHHHHHHhh
Confidence 66664 3444443444544
No 56
>KOG1934|consensus
Probab=94.32 E-value=0.096 Score=53.33 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=74.3
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCCh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNR--DRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~--~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
|+++.+.|...|+|-++.=-..+|++||=+-=+.++..+..+.. ++|+.++|.+.|.++.-.++|-+++..+=++++.
T Consensus 301 ~G~l~~~G~~f~sI~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SItITSlTn~lsFgiG~~T~~ 380 (868)
T KOG1934|consen 301 FGLLFWCGFPFNSIVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSITITSLTNVLSFGIGAITPT 380 (868)
T ss_pred HHHHHHcCCCCcceeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHHHHhccCCCc
Confidence 78999999999999999988899999999999999999876654 4999999999999999998888888888888888
Q ss_pred chhHHH
Q psy8507 173 QFILRI 178 (197)
Q Consensus 173 ~~~~~~ 178 (197)
.-++.|
T Consensus 381 p~v~~F 386 (868)
T KOG1934|consen 381 PAVQIF 386 (868)
T ss_pred HHHHHH
Confidence 776653
No 57
>KOG1935|consensus
Probab=93.61 E-value=0.16 Score=51.68 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=71.8
Q ss_pred HHHHHHhccccchhhH-HHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q psy8507 95 LLVMYLMNIKLNPISC-VLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQ 173 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~-v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~ 173 (197)
.++-++.||.+|+-+. |.=-.+.|++||..--.+|+|....+. .+|+...|++.|.+|+-.+++++++.++-++.+-.
T Consensus 459 LGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~-~~~~~~~lk~tG~Svl~tsinni~aF~~aallPIP 537 (1143)
T KOG1935|consen 459 LGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL-HEEMGELLKETGMSVLLTSINNILAFLMAALLPIP 537 (1143)
T ss_pred hhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh-HHHHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcH
Confidence 5589999999998765 445679999999999999999776544 79999999999999999999999999999988877
Q ss_pred hhHHH
Q psy8507 174 FILRI 178 (197)
Q Consensus 174 ~~~~~ 178 (197)
-.+.|
T Consensus 538 ALrsF 542 (1143)
T KOG1935|consen 538 ALRSF 542 (1143)
T ss_pred HHHHH
Confidence 76654
No 58
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=90.96 E-value=1.7 Score=39.40 Aligned_cols=82 Identities=10% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhH----hhcccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLS----FLTCIG-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~----F~~s~~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
+|++.|+++|.-+...|.+-||.||+=+.=+--. ....++ +..|-+..++...-.-.+.-.++|++.+++|.+=.
T Consensus 177 ~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fg 256 (305)
T COG0341 177 FFSLFGIEFNLATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFG 256 (305)
T ss_pred HHHHhheeecHHHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999988644322 211111 12255666777777777777888999888776544
Q ss_pred cchhHHH
Q psy8507 172 FQFILRI 178 (197)
Q Consensus 172 s~~~~~~ 178 (197)
-..++.|
T Consensus 257 g~~l~~f 263 (305)
T COG0341 257 GGSLKDF 263 (305)
T ss_pred chHHHHH
Confidence 3445543
No 59
>COG4258 Predicted exporter [General function prediction only]
Probab=88.04 E-value=1.3 Score=43.96 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=58.2
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhH
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFIL 176 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~ 176 (197)
...+.|+.||-.+.+.++...|++.+|+.-..++- .++.|-.. .--.+.-+.++|+++.-+|++|...++.
T Consensus 689 ~~a~aGvplnLfhllal~LvlgvG~nYalFfs~~~----~~~ae~lt-----tl~alala~ltTlltfgLLa~Sa~pvLs 759 (788)
T COG4258 689 VLAMAGVPLNLFHLLALVLVLGVGINYALFFSNAG----DPRAEPLT-----TLLALALAMLTTLLTFGLLAFSATPVLS 759 (788)
T ss_pred HHHHcCCchhHHHHHHHHHHHHcccchhhhhhccc----CCCCchHH-----HHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 66788999999999999999999999998776643 22223222 2334567789999999999999999988
Q ss_pred HHH
Q psy8507 177 RIF 179 (197)
Q Consensus 177 ~~F 179 (197)
.|-
T Consensus 760 sfG 762 (788)
T COG4258 760 SFG 762 (788)
T ss_pred Hhh
Confidence 764
No 60
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=87.84 E-value=1.2 Score=46.15 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=59.8
Q ss_pred HHHHhccccchhhHHHHhhhhcce-------eeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIY-------IHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAF 169 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~s-------VDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~f 169 (197)
-+.+.|.++|..+++-+++-+|+. |||.-|.-+ .-.+++|-+.+|=..-..||+..++++++|++||++
T Consensus 893 ~L~l~g~~~~i~a~IGli~LiGiv~KNaIllVefa~~~~~----~G~~~~eAiieA~~~RlRPIlMTtla~ilG~iPLal 968 (1009)
T COG0841 893 ALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRA----EGLSLREAILEAARLRLRPILMTSLAAILGVLPLAL 968 (1009)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCcEEEEhHHHHHHH----cCCCHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhh
Confidence 667889999999999999999987 566655443 122345778888888899999999999999999998
Q ss_pred cccc
Q psy8507 170 SEFQ 173 (197)
Q Consensus 170 s~s~ 173 (197)
+...
T Consensus 969 ~~g~ 972 (1009)
T COG0841 969 STGA 972 (1009)
T ss_pred cccc
Confidence 8754
No 61
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=83.60 E-value=6.4 Score=39.86 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=69.4
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc---cC--ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC---IG--NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSE 171 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s---~~--~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~ 171 (197)
++++.|+++|.-....+++-+|.|++=++=+--.-... .+ +-++-+-.++.+.-.=.+...+||++.+++|.+--
T Consensus 621 ~fsl~~~e~~l~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS~TTll~~l~L~ifG 700 (758)
T PRK13023 621 MFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFG 700 (758)
T ss_pred HHHHhCceecHHHHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999987554333221 11 22366778888888888888999999999997766
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q psy8507 172 FQFILRIFFYMLFGIVLVGL 191 (197)
Q Consensus 172 s~~~~~~FF~~~~~vi~~G~ 191 (197)
...++.|=+.+++. ++.|.
T Consensus 701 g~~i~~Fal~lliG-iv~Gt 719 (758)
T PRK13023 701 GSEIRMFALALSVG-IIVAS 719 (758)
T ss_pred CccHHHHHHHHHHH-HHHHH
Confidence 66677765555444 34443
No 62
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=79.53 E-value=10 Score=39.03 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=58.2
Q ss_pred cchhhHHH-HhhhhcceeeehHHHHhHhhccc--C-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhHHH
Q psy8507 105 LNPISCVL-IVNSSGIYIHFISYICLSFLTCI--G-NRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFILRI 178 (197)
Q Consensus 105 Ln~iS~v~-Li~sIG~sVDFtaHI~~~F~~s~--~-~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~~~ 178 (197)
++..+... ..+.+|.++||+.=+.-.|.... | .+++-+..++...|..|...+.+...+..+|.|++..++++.
T Consensus 240 ~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~~a~~~~~~s~ 317 (937)
T COG2409 240 VSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLSFARLPFLKTL 317 (937)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHHhcccchhhhc
Confidence 33343333 34578999999999999998432 3 445778899999999999999999999999999998877654
No 63
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=76.81 E-value=1.8 Score=44.65 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=53.1
Q ss_pred HHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcc----cCChh---HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy8507 96 LVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC----IGNRD---RRVRLSIEHMYSVVLHAGLILLVAISIL 167 (197)
Q Consensus 96 ~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s----~~~~~---~R~~~aL~~~G~pVl~ga~ST~lgv~~L 167 (197)
-+|-.+|++.|-.|.=-|.++||.-||-++=+.-.-++. +.++. +-+.+|-.+++.|++.|-+-..+-.+|+
T Consensus 377 ~~M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~lII~vvf~PI 455 (1027)
T COG3696 377 IVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPI 455 (1027)
T ss_pred HHHHHcCCcchhhcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhhhhheeehhhh
Confidence 399999999999999999999999999886554333221 11333 4467899999999999965544444444
No 64
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=68.87 E-value=17 Score=37.46 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=54.6
Q ss_pred HHHHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhccc--CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy8507 95 LLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI--GNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172 (197)
Q Consensus 95 f~~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~--~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s 172 (197)
+.++.++|++++.+--+.=-..++++||=..=+++.-+++. .+-++|+.++|..+|.++.-.+++-.+++.+=++++.
T Consensus 108 ~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~m 187 (886)
T TIGR00920 108 TAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGV 187 (886)
T ss_pred HHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCC
Confidence 45899999999988555423334444554444443322322 2334999999999999999998888888777666664
Q ss_pred chh
Q psy8507 173 QFI 175 (197)
Q Consensus 173 ~~~ 175 (197)
.-+
T Consensus 188 PAV 190 (886)
T TIGR00920 188 RRL 190 (886)
T ss_pred HHH
Confidence 433
No 65
>COG4258 Predicted exporter [General function prediction only]
Probab=66.39 E-value=23 Score=35.58 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchhH
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFIL 176 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~ 176 (197)
.|-.+| ++.-++.+-=..-||.+|||+.|+-..- ...|++.+--+ ...++-..+.-|.+||.+|-.-+.||++.=++
T Consensus 301 t~laFg-~lH~lTl~fg~slIGeAvDYsI~yfv~h-~~pG~~~dp~r-saaev~paL~lallTtvlayatmlfs~fpgLr 377 (788)
T COG4258 301 TLLAFG-ELHLLTLVFGMSLIGEAVDYSIYYFVEH-MVPGNDVDPWR-SAAEVRPALLLALLTTVLAYATMLFSPFPGLR 377 (788)
T ss_pred HHHHHh-hHhHHHHHhhhhheeecccceeeehhhc-cCCCCCCChhH-HHHHhhHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 444444 4444444444456999999998753311 22343332222 26677777788899999999999999998776
Q ss_pred H
Q psy8507 177 R 177 (197)
Q Consensus 177 ~ 177 (197)
.
T Consensus 378 Q 378 (788)
T COG4258 378 Q 378 (788)
T ss_pred H
Confidence 4
No 66
>KOG3664|consensus
Probab=56.67 E-value=0.53 Score=48.52 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=60.2
Q ss_pred HHHHhccccchhhHHHHhhhhcceeeehHHHHhHhhcccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy8507 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFS 170 (197)
Q Consensus 97 ~M~l~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~~s~~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs 170 (197)
.|.+.|..+..+-++++..-+|-|+|+|.|+..++.........+.+.|-++-|.++..++.|++++-.++.+.
T Consensus 851 a~~~~g~~~~~~ea~~lp~~~~ssfdytlh~vs~~~d~~cl~~~~~~~a~~~~~~~~vsp~~t~~~aG~p~l~~ 924 (999)
T KOG3664|consen 851 ASPLLGWRLGVLEATILPIGVGSSFDYTLHIVSALSDTGCLSPTSEVAAPRHGGSALVSPALTDFLAGQPMLFR 924 (999)
T ss_pred cchhhhhhhhhceeccCceeeecchhheeeeeeeecccccccccccccccccCCceeeccchhhhccCCcchhh
Confidence 57778888889999999999999999999999988766544435555777888999999999997766666653
No 67
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=56.01 E-value=47 Score=35.99 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=57.3
Q ss_pred hccccchhhHHHHhhhhcceeeehHHHHhHhh----ccc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccchh
Q psy8507 101 MNIKLNPISCVLIVNSSGIYIHFISYICLSFL----TCI-GNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFI 175 (197)
Q Consensus 101 ~gi~Ln~iS~v~Li~sIG~sVDFtaHI~~~F~----~s~-~~~~~R~~~aL~~~G~pVl~ga~ST~lgv~~L~fs~s~~~ 175 (197)
.|+++|......++.-||.|+.=|+=|--.-. ..+ .+-.+-+-.|+...-.=.+...+||++.+++|.+---..+
T Consensus 1286 fgiEfdltfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~SINQTLsRTI~TSlTTLLallaLllFGG~sI 1365 (1403)
T PRK12911 1286 QKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSI 1365 (1403)
T ss_pred cCeEEcHHHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcchhH
Confidence 37788888888888888888877763222111 111 1112455666666666667779999999998887766667
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8507 176 LRIFFYMLFGIVLVGL 191 (197)
Q Consensus 176 ~~~FF~~~~~vi~~G~ 191 (197)
+.|=|.|++. ++.|.
T Consensus 1366 ~~FAlALLIG-IIvGT 1380 (1403)
T PRK12911 1366 FNFAFIMTIG-ILLGT 1380 (1403)
T ss_pred HHHHHHHHHH-HHHHH
Confidence 7665555444 34443
No 68
>KOG3411|consensus
Probab=52.04 E-value=22 Score=28.84 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=28.8
Q ss_pred hhhHHHhh-hhhhccCCCCCcchhhHhhhhhhhcCCCcChhHHH
Q psy8507 54 ESSILAYK-LLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLL 96 (197)
Q Consensus 54 ~~~ila~r-~~iqt~~~~~~~~~~~~~~~r~v~~~~~i~p~~f~ 96 (197)
.+-+-||. ||=.+|.+.-|..-+.+++-.. .|-.|++|++||
T Consensus 12 ~~f~~a~asfLK~sgkv~vp~~~DivKtg~~-kElAP~D~dWfy 54 (143)
T KOG3411|consen 12 HKFTKAYASFLKRSGKVEVPQWVDIVKTGKG-KELAPYDPDWYY 54 (143)
T ss_pred HHHHHHHHHHHHhcCCccCcchhhhhhcccC-cccCCCCccHHH
Confidence 44566777 6777898888876665553221 244589999999
No 69
>COG5547 Small integral membrane protein [Function unknown]
Probab=46.14 E-value=53 Score=23.07 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH--HHhhhhh
Q psy8507 146 IEHMYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVL--VGLLYMV 195 (197)
Q Consensus 146 L~~~G~pVl~ga~ST~lgv~~L~fs~s~~~~~~FF~~~~~vi~--~G~~hGL 195 (197)
|+.--+|++-|-+-.+++++.+.| -|||+++++++ +|.--|+
T Consensus 4 lk~fkypIIgglvglliAili~t~--------GfwKtilviil~~lGv~iGl 47 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF--------GFWKTILVIILILLGVYIGL 47 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 566678999998888888887765 24576665544 3444443
Done!