Your job contains 1 sequence.
>psy8507
MRVPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAY
KLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIVNSSGIY
IHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFILRIFF
YMLFGIVLVGLLYMVLL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8507
(197 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003892 - symbol:ptc "patched" species:7227 "Droso... 313 9.8e-41 2
UNIPROTKB|F1NYG9 - symbol:PTCH1 "Protein patched homolog ... 216 5.5e-34 2
WB|WBGene00004208 - symbol:ptc-1 species:6239 "Caenorhabd... 201 5.3e-23 2
WB|WBGene00004210 - symbol:ptc-3 species:6239 "Caenorhabd... 188 6.6e-18 2
ZFIN|ZDB-GENE-980526-196 - symbol:ptch1 "patched 1" speci... 229 1.4e-17 1
WB|WBGene00004209 - symbol:ptc-2 species:6239 "Caenorhabd... 146 1.1e-16 2
UNIPROTKB|F1MVV4 - symbol:PTCH1 "Uncharacterized protein"... 213 1.8e-16 1
UNIPROTKB|Q90693 - symbol:PTCH1 "Protein patched homolog ... 215 4.2e-16 1
UNIPROTKB|Q6UY90 - symbol:Ptch1 "Protein Ptch1" species:1... 213 6.8e-16 1
MGI|MGI:105373 - symbol:Ptch1 "patched homolog 1" species... 213 6.8e-16 1
UNIPROTKB|Q13635 - symbol:PTCH1 "Protein patched homolog ... 213 6.9e-16 1
UNIPROTKB|I3LVF2 - symbol:PTCH1 "Uncharacterized protein"... 213 6.9e-16 1
UNIPROTKB|F1PNE0 - symbol:PTCH1 "Uncharacterized protein"... 199 8.9e-16 2
ZFIN|ZDB-GENE-980526-44 - symbol:ptch2 "patched 2" specie... 199 2.9e-15 2
UNIPROTKB|G3N0B8 - symbol:PTCH1 "Uncharacterized protein"... 193 9.5e-15 1
UNIPROTKB|F1NBK3 - symbol:PTCH2 "Uncharacterized protein"... 187 2.2e-14 1
UNIPROTKB|Q9Y6C5 - symbol:PTCH2 "Protein patched homolog ... 193 7.4e-14 1
UNIPROTKB|E2RHI9 - symbol:PTCH2 "Uncharacterized protein"... 192 9.4e-14 1
UNIPROTKB|E1B778 - symbol:PTCH2 "Uncharacterized protein"... 190 1.5e-13 1
MGI|MGI:1095405 - symbol:Ptch2 "patched homolog 2" specie... 187 3.1e-13 1
UNIPROTKB|F1LW60 - symbol:F1LW60 "Uncharacterized protein... 153 1.0e-09 1
UNIPROTKB|K7ERM4 - symbol:NPC1 "Niemann-Pick C1 protein" ... 126 1.0e-07 1
UNIPROTKB|K7ERW2 - symbol:NPC1 "Niemann-Pick C1 protein" ... 126 2.0e-07 1
FB|FBgn0261675 - symbol:Npc1b "Niemann-Pick type C-1b" sp... 130 4.4e-06 2
UNIPROTKB|F1SBB5 - symbol:NPC1 "Niemann-Pick C1 protein" ... 129 1.1e-05 1
UNIPROTKB|P56941 - symbol:NPC1 "Niemann-Pick C1 protein" ... 129 1.1e-05 1
UNIPROTKB|F1NQT4 - symbol:NPC1 "Uncharacterized protein" ... 129 1.1e-05 1
UNIPROTKB|Q8MI49 - symbol:Q8MI49 "Mutant Niemann-Pick C1"... 128 1.5e-05 1
UNIPROTKB|Q8MKD8 - symbol:Q8MKD8 "Niemann-Pick C1" specie... 128 1.5e-05 1
UNIPROTKB|Q9N0Q0 - symbol:NPC1 "Niemann-Pick type C1 dise... 128 1.5e-05 1
UNIPROTKB|Q9JLG3 - symbol:NPC1 "Niemann-Pick type C1 prot... 128 1.5e-05 2
UNIPROTKB|B4DET3 - symbol:NPC1 "Niemann-Pick C1 protein" ... 126 2.0e-05 1
UNIPROTKB|K7EQ23 - symbol:NPC1 "Niemann-Pick C1 protein" ... 126 2.0e-05 1
UNIPROTKB|B0JYK2 - symbol:NPC1 "Uncharacterized protein" ... 126 2.8e-05 1
UNIPROTKB|F1PB50 - symbol:NPC1 "Uncharacterized protein" ... 126 2.8e-05 1
UNIPROTKB|O15118 - symbol:NPC1 "Niemann-Pick C1 protein" ... 126 2.8e-05 1
DICTYBASE|DDB_G0269158 - symbol:npcA "Niemann-Pick C type... 124 5.3e-05 1
ZFIN|ZDB-GENE-030131-3161 - symbol:npc1 "Niemann-Pick dis... 122 9.0e-05 1
UNIPROTKB|Q9TT75 - symbol:NPC1 "Niemann-Pick type C1 dise... 122 9.1e-05 1
MGI|MGI:1097712 - symbol:Npc1 "Niemann Pick type C1" spec... 124 9.2e-05 2
UNIPROTKB|G3V7K5 - symbol:Cdig2 "RCG41239" species:10116 ... 121 0.00024 2
DICTYBASE|DDB_G0276657 - symbol:npcB "Niemann-Pick C type... 118 0.00032 1
FB|FBgn0024320 - symbol:Npc1a "Niemann-Pick type C-1a" sp... 119 0.00047 2
UNIPROTKB|J9PBB6 - symbol:J9PBB6 "Uncharacterized protein... 98 0.00076 2
>FB|FBgn0003892 [details] [associations]
symbol:ptc "patched" species:7227 "Drosophila melanogaster"
[GO:0008158 "hedgehog receptor activity" evidence=IMP;TAS]
[GO:0005887 "integral to plasma membrane" evidence=NAS;TAS]
[GO:0007224 "smoothened signaling pathway"
evidence=IGI;NAS;IMP;TAS] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0045169 "fusome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IDA]
[GO:0045879 "negative regulation of smoothened signaling pathway"
evidence=IGI;TAS] [GO:0048099 "anterior/posterior lineage
restriction, imaginal disc" evidence=TAS] [GO:0007350 "blastoderm
segmentation" evidence=NAS] [GO:0001746 "Bolwig's organ
morphogenesis" evidence=IMP] [GO:0030707 "ovarian follicle cell
development" evidence=TAS] [GO:0007422 "peripheral nervous system
development" evidence=TAS] [GO:0016021 "integral to membrane"
evidence=IEA;TAS] [GO:0009880 "embryonic pattern specification"
evidence=TAS] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IMP] [GO:0004888 "transmembrane signaling receptor
activity" evidence=NAS] [GO:0048100 "wing disc anterior/posterior
pattern formation" evidence=TAS] [GO:0007455 "eye-antennal disc
morphogenesis" evidence=IMP] [GO:0016311 "dephosphorylation"
evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0009952
"anterior/posterior pattern specification" evidence=NAS]
[GO:0048103 "somatic stem cell division" evidence=TAS] [GO:0042078
"germ-line stem cell division" evidence=TAS] [GO:0042306
"regulation of protein import into nucleus" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035225
"determination of genital disc primordium" evidence=IMP]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=IMP] [GO:0030139
"endocytic vesicle" evidence=IDA] [GO:0055088 "lipid homeostasis"
evidence=IMP] [GO:0030228 "lipoprotein particle receptor activity"
evidence=IDA] [GO:0008406 "gonad development" evidence=IMP]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004766
Pfam:PF02460 PROSITE:PS50156 EMBL:AE013599 GO:GO:0007346
GO:GO:0048471 GO:GO:0007411 GO:GO:0005887 GO:GO:0008406
GO:GO:0030707 GO:GO:0006508 GO:GO:0007422 GO:GO:0035225
GO:GO:0055088 GO:GO:0016311 GO:GO:0030139 GO:GO:0007367
GO:GO:0042306 GO:GO:0007476 GO:GO:0009880 GO:GO:0007224
GO:GO:0030228 GO:GO:0001746 GO:GO:0007455 GO:GO:0008158
GO:GO:0048103 GO:GO:0042078 GO:GO:0045879 GO:GO:0048100
HOGENOM:HOG000228313 GO:GO:0048099 GeneTree:ENSGT00680000099777
eggNOG:NOG313603 KO:K06225 TIGRFAMs:TIGR00918 OMA:APDRDYL
EMBL:M28999 EMBL:M28418 EMBL:X17558 PIR:S06119 RefSeq:NP_523661.2
UniGene:Dm.2630 ProteinModelPortal:P18502 DIP:DIP-634N
STRING:P18502 TCDB:2.A.6.6.2 EnsemblMetazoa:FBtr0089427
GeneID:35851 KEGG:dme:Dmel_CG2411 UCSC:CG2411-RA CTD:35851
FlyBase:FBgn0003892 InParanoid:P18502 OrthoDB:EOG4BRV1N
PhylomeDB:P18502 GenomeRNAi:35851 NextBio:795513 Bgee:P18502
GermOnline:CG2411 Uniprot:P18502
Length = 1286
Score = 313 (115.2 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
Identities = 58/93 (62%), Positives = 75/93 (80%)
Query: 1 MRVPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAY 60
+RVP+++KND+GGLP +FWL LF +WL LQ+ FD++Y G +T+E WFPNAS +ILAY
Sbjct: 758 VRVPHVIKNDNGGLP-DFWLLLFSEWLGNLQKIFDEEYRDGRLTKECWFPNASSDAILAY 816
Query: 61 KLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPK 93
KL+VQTG VDNPVDK L+ NRLV+ DGIIN +
Sbjct: 817 KLIVQTGHVDNPVDKELVLTNRLVNSDGIINQR 849
Score = 163 (62.4 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
Identities = 36/100 (36%), Positives = 62/100 (62%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAG 157
M L+ IKL+ I V+++ S G+ + F I L F+T +GNR RRV+LS++ ++H
Sbjct: 999 MTLLGIKLSAIPAVILILSVGMMLCFNVLISLGFMTSVGNRQRRVQLSMQMSLGPLVHGM 1058
Query: 158 LILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
L VA+ +L+ S F+F++R F ++L ++ VG +L+
Sbjct: 1059 LTSGVAVFMLSTSPFEFVIRHFCWLLLVVLCVGACNSLLV 1098
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 142 VRLSIEHMYSVVLHAGLILLVAISILAFSEFQFILRIFFYM--LFG-IVLVGL 191
+R S+ + + VL A L+L+ + + ++ IL + + +FG + L+G+
Sbjct: 952 LRSSLAMILACVLLAALVLVSLLLLSVWAAVLVILSVLASLAQIFGAMTLLGI 1004
>UNIPROTKB|F1NYG9 [details] [associations]
symbol:PTCH1 "Protein patched homolog 1" species:9031
"Gallus gallus" [GO:0008158 "hedgehog receptor activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001658 "branching
involved in ureteric bud morphogenesis" evidence=IEA] [GO:0001843
"neural tube closure" evidence=IEA] [GO:0003007 "heart
morphogenesis" evidence=IEA] [GO:0005113 "patched binding"
evidence=IEA] [GO:0005119 "smoothened binding" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005901 "caveola"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=IEA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IEA] [GO:0007420 "brain development" evidence=IEA]
[GO:0008201 "heparin binding" evidence=IEA] [GO:0008544 "epidermis
development" evidence=IEA] [GO:0008589 "regulation of smoothened
signaling pathway" evidence=IEA] [GO:0010157 "response to chlorate"
evidence=IEA] [GO:0010875 "positive regulation of cholesterol
efflux" evidence=IEA] [GO:0015485 "cholesterol binding"
evidence=IEA] [GO:0016485 "protein processing" evidence=IEA]
[GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA]
[GO:0021997 "neural plate axis specification" evidence=IEA]
[GO:0030326 "embryonic limb morphogenesis" evidence=IEA]
[GO:0030332 "cyclin binding" evidence=IEA] [GO:0030496 "midbody"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0035137 "hindlimb morphogenesis" evidence=IEA] [GO:0040015
"negative regulation of multicellular organism growth"
evidence=IEA] [GO:0042593 "glucose homeostasis" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043616
"keratinocyte proliferation" evidence=IEA] [GO:0045668 "negative
regulation of osteoblast differentiation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0050680
"negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0060037 "pharyngeal system development"
evidence=IEA] [GO:0060603 "mammary gland duct morphogenesis"
evidence=IEA] [GO:0060644 "mammary gland epithelial cell
differentiation" evidence=IEA] [GO:0061005 "cell differentiation
involved in kidney development" evidence=IEA] [GO:0061053 "somite
development" evidence=IEA] [GO:0071397 "cellular response to
cholesterol" evidence=IEA] [GO:0072203 "cell proliferation involved
in metanephros development" evidence=IEA] [GO:0072661 "protein
targeting to plasma membrane" evidence=IEA] [GO:0097108 "hedgehog
family protein binding" evidence=IEA] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156
GO:GO:0016021 GO:GO:0007346 GO:GO:0005794 GO:GO:0048471
GO:GO:0043616 GO:GO:0008201 GO:GO:0032880 GO:GO:0042593
GO:GO:0015485 GO:GO:0010875 GO:GO:0000122 GO:GO:0040015
GO:GO:0005901 GO:GO:0043433 GO:GO:0030496 GO:GO:0016485
GO:GO:0050680 GO:GO:0072661 GO:GO:0007224 GO:GO:0045668
GO:GO:0008158 GO:GO:0051782 GO:GO:0045879 GO:GO:0010157
GeneTree:ENSGT00680000099777 IPI:IPI00593923 TIGRFAMs:TIGR00918
OMA:APDRDYL EMBL:AADN02067838 EMBL:AADN02067839 EMBL:AADN02067840
EMBL:AADN02067841 EMBL:AADN02067842 EMBL:AADN02067843
Ensembl:ENSGALT00000020601 Uniprot:F1NYG9
Length = 1303
Score = 216 (81.1 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 48/105 (45%), Positives = 60/105 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ D LP WL FRDWL GLQ++FD D+ G IT + N S+ ++LAYKL
Sbjct: 697 VTYVLLEGDRQLP-KMWLHYFRDWLQGLQDAFDSDWETGKITYSN-YKNGSDDAVLAYKL 754
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNP 107
LVQTG P+D S + RLV DGIINP + YL NP
Sbjct: 755 LVQTGNRAKPIDISQLTKQRLVDADGIINPNAFYI-YLTAWVSNP 798
Score = 197 (74.4 bits), Expect = 5.5e-34, Sum P(2) = 5.5e-34
Identities = 43/110 (39%), Positives = 74/110 (67%)
Query: 89 IINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEH 148
++ +L +M L+ IKL+ + V+++ S GI + F +I L+FLT IG+++RR L++EH
Sbjct: 922 LMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHIALAFLTAIGDKNRRAVLALEH 981
Query: 149 MYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
M++ VL + L+ + +LA SEF FI+R FF +L + ++G+L +VLL
Sbjct: 982 MFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLL 1031
Score = 38 (18.4 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ ++ LA LLV
Sbjct: 320 AYACLTMLRWDCAKSQGAVGLAGVLLV 346
>WB|WBGene00004208 [details] [associations]
symbol:ptc-1 species:6239 "Caenorhabditis elegans"
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0019915 "lipid storage" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0018991 "oviposition" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0005887 "integral to
plasma membrane" evidence=IDA] InterPro:IPR000731
InterPro:IPR003392 Pfam:PF02460 PROSITE:PS50156 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0005887
GO:GO:0051301 GO:GO:0007067 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0019915 GO:GO:0008158
GeneTree:ENSGT00680000099777 EMBL:Z46812 PIR:T27969
RefSeq:NP_495662.2 ProteinModelPortal:Q09614 STRING:Q09614
PaxDb:Q09614 EnsemblMetazoa:ZK675.1.1 EnsemblMetazoa:ZK675.1.2
GeneID:174274 KEGG:cel:CELE_ZK675.1 UCSC:ZK675.1.1 CTD:174274
WormBase:ZK675.1 eggNOG:NOG313603 HOGENOM:HOG000016673
InParanoid:Q09614 KO:K06225 OMA:CQFNYTI NextBio:883327
GermOnline:ZK675.1 Uniprot:Q09614
Length = 1408
Score = 201 (75.8 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 36/110 (32%), Positives = 70/110 (63%)
Query: 88 GIINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIE 147
GI+ +L M L+ IKLNP+S V ++ + GI + F ++ +SFLT +G R +R +++
Sbjct: 1216 GIMTCELAGFMGLVGIKLNPVSAVTLITAVGIGVEFTVHVVVSFLTALGTRSQRTSSAVD 1275
Query: 148 HMYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
++ V+H L+ I +L FSEF+F+++ FF ++ ++ +G++ ++L
Sbjct: 1276 RVFVPVIHGSFSTLLGILMLGFSEFEFVVKYFFIVMTALICIGIINGLIL 1325
Score = 108 (43.1 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 6 IVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGC--ITQERWF-PNASESSILAYKL 62
++KN + +WL L RDWL+ +Q FD++ A G +T N SE + LA+ L
Sbjct: 988 VIKNKNEEPSEKYWLGLMRDWLISIQRGFDEEVAKGSFNLTSGTVIGSNVSEDARLAHAL 1047
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIIN 91
+ G + + + RLV GIIN
Sbjct: 1048 MCSHGSLFGCAGR--VGKIRLVDASGIIN 1074
>WB|WBGene00004210 [details] [associations]
symbol:ptc-3 species:6239 "Caenorhabditis elegans"
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0016324 "apical plasma membrane" evidence=IDA]
[GO:0031410 "cytoplasmic vesicle" evidence=IDA] InterPro:IPR000731
InterPro:IPR003392 Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0016324
GO:GO:0018996 GO:GO:0031410 GO:GO:0040011 GO:GO:0040018
GO:GO:0008158 GeneTree:ENSGT00680000099777 EMBL:FO081635
UniGene:Cel.5929 GeneID:173631 KEGG:cel:CELE_Y110A2AL.8 CTD:173631
RefSeq:NP_001122650.1 ProteinModelPortal:H2L0G5
EnsemblMetazoa:Y110A2AL.8c WormBase:Y110A2AL.8c OMA:MNPISAV
Uniprot:H2L0G5
Length = 1367
Score = 188 (71.2 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 35/94 (37%), Positives = 60/94 (63%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAG 157
M LM IK+NPIS V ++ + GI + F +++ L+FLT +G D+R+ ++HM+ V H
Sbjct: 1187 MGLMGIKMNPISAVTLICAVGIGVEFTAHVELAFLTALGTIDQRLESCLQHMFVPVYHGA 1246
Query: 158 LILLVAISILAFSEFQFILRIFFYMLFGIVLVGL 191
+ + + +L FSEF F++ FFY + +V +G+
Sbjct: 1247 ISTFLGVVMLVFSEFDFVVTYFFYTMTLLVALGV 1280
Score = 72 (30.4 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 18 FWLELFRDWLLGLQESFDKDYAAGCITQERWFP---NA---SESSILAYKLLVQTG---R 68
+W+ + R WL L + +KD AAG P N S S++A +L+ G
Sbjct: 960 YWMSMLRVWLQSLDMALEKDLAAGKFDLTNGNPIKVNGEKPSPESMIAARLVCSFGTNYN 1019
Query: 69 VDNPVDKSLIKHNRLVSRDGIIN 91
D + K + N +++ +G N
Sbjct: 1020 CDGRLGKMKMVENEVINPEGFYN 1042
>ZFIN|ZDB-GENE-980526-196 [details] [associations]
symbol:ptch1 "patched 1" species:7955 "Danio rerio"
[GO:0016020 "membrane" evidence=IEA] [GO:0008158 "hedgehog receptor
activity" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0048635 "negative regulation of muscle organ
development" evidence=IGI] [GO:0010002 "cardioblast
differentiation" evidence=IGI] [GO:0060042 "retina morphogenesis in
camera-type eye" evidence=IMP] [GO:0001957 "intramembranous
ossification" evidence=IMP] [GO:0001649 "osteoblast
differentiation" evidence=IMP] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] [GO:0045879 "negative regulation of
smoothened signaling pathway" evidence=IMP] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156
ZFIN:ZDB-GENE-980526-196 GO:GO:0016021 GO:GO:0010002 GO:GO:0001649
GO:GO:0001957 GO:GO:0008158 GO:GO:0045879 GO:GO:0048635
GO:GO:0060042 GeneTree:ENSGT00680000099777 KO:K06225 CTD:5727
TIGRFAMs:TIGR00918 OMA:APDRDYL EMBL:CR847548 EMBL:CR376747
EMBL:CR382329 EMBL:CT027671 IPI:IPI00994727 RefSeq:XP_001922161.3
UniGene:Dr.116176 UniGene:Dr.81263 Ensembl:ENSDART00000121923
GeneID:30189 KEGG:dre:30189 NextBio:20806655 ArrayExpress:F1QRE4
Bgee:F1QRE4 Uniprot:F1QRE4
Length = 1475
Score = 229 (85.7 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 50/107 (46%), Positives = 67/107 (62%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V I++ ++G LP WL FRDWLLGLQE+FDKD+ AG ITQ + N S+ +LAYKL
Sbjct: 848 VKYILREENGQLP-RMWLHYFRDWLLGLQEAFDKDWQAGRITQGN-YRNGSDDGVLAYKL 905
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTGR + + + RLVS DGIINP + + +P++
Sbjct: 906 LVQTGRREKTITRQ-----RLVSADGIINPNAFYIYLSAWVSNDPVA 947
Score = 195 (73.7 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 53/146 (36%), Positives = 87/146 (59%)
Query: 53 SESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVL 112
S S +LA LV + NP +I LV ++ +L +M L+ IKL+ + V+
Sbjct: 1045 SISVVLACTFLVCAVFLLNPWTAGIIV---LVL--SLMTVELFGMMGLIGIKLSAVPVVI 1099
Query: 113 IVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172
++ S GI + F ++ L+FLT IG+R++R L++EHM++ VL L+ + +LA SEF
Sbjct: 1100 LIASVGIGVEFTVHVALAFLTAIGDRNKRAVLALEHMFAPVLDGAFSTLLGVLMLAGSEF 1159
Query: 173 QFILRIFFYMLFGIVLVGLLY-MVLL 197
FI+R FF +L + ++G+L +VLL
Sbjct: 1160 DFIVRYFFAVLAILTVLGVLNGLVLL 1185
Score = 38 (18.4 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ ++ LA LLV
Sbjct: 440 AYACLTMLRWDCAKSQGAVGLAGVLLV 466
>WB|WBGene00004209 [details] [associations]
symbol:ptc-2 species:6239 "Caenorhabditis elegans"
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0019915 "lipid storage" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0018991 "oviposition" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000731 InterPro:IPR003392
Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0040011 GO:GO:0019915 GO:GO:0008158 EMBL:FO080717
GeneTree:ENSGT00680000099777 KO:K06225 PIR:T16126
RefSeq:NP_495218.2 UniGene:Cel.32852 ProteinModelPortal:Q09540
SMR:Q09540 PaxDb:Q09540 EnsemblMetazoa:F21H12.4 GeneID:191745
KEGG:cel:CELE_F21H12.4 UCSC:F21H12.4 CTD:191745 WormBase:F21H12.4
eggNOG:NOG244490 InParanoid:Q09540 OMA:ANDNHAC NextBio:950188
Uniprot:Q09540
Length = 667
Score = 146 (56.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 88 GIINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIE 147
GI+ +L M L+ IKLNP+S V ++ + GI + F ++ +SFLT +G R +R +++
Sbjct: 584 GIMTCELAGFMGLVGIKLNPVSAVTLITAVGIGVEFTVHVVVSFLTALGTRSQRTSSAVD 643
Query: 148 HMYSVVLHAGLILLVAISILAFS 170
++ V+H L+ I +L FS
Sbjct: 644 RVFVPVIHGSFSTLLGILMLGFS 666
Score = 95 (38.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 6 IVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGC--ITQERWF-PNASESSILAYKL 62
++KN + +WL L RDWL+ +Q FD++ A G +T N SE + LA+ L
Sbjct: 418 VIKNKNEEPSEKYWLGLMRDWLISIQRGFDEEVAKGSFNLTSGTVIGSNVSEDARLAHAL 477
Query: 63 LVQTG 67
+ G
Sbjct: 478 MCSHG 482
>UNIPROTKB|F1MVV4 [details] [associations]
symbol:PTCH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016020 "membrane" evidence=IEA] [GO:0008158 "hedgehog
receptor activity" evidence=IEA] InterPro:IPR003392 Pfam:PF02460
GO:GO:0016020 GO:GO:0008158 GeneTree:ENSGT00680000099777
EMBL:DAAA02024005 IPI:IPI00694886 Ensembl:ENSBTAT00000013074
OMA:LATEFQE Uniprot:F1MVV4
Length = 584
Score = 213 (80.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 264 VKYVMLEENKQLP-KMWLHYFRDWLQGLQDAFDSDWETGKIMPNN-YKNGSDDGVLAYKL 321
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 322 LVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDPVA 368
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 43/124 (34%), Positives = 73/124 (58%)
Query: 53 SESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVL 112
S S +LA LV + NP +I V+ ++ +L +M L+ IKL+ + V+
Sbjct: 466 SISVVLACTFLVCAVFLLNPWTAGII-----VTVLALMTVELFGMMGLIGIKLSAVPVVI 520
Query: 113 IVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172
++ S GI + F ++ L+FLT IG+++RR L++EHM++ VL + L+ + +LA SEF
Sbjct: 521 LIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEF 580
Query: 173 QFIL 176
FI+
Sbjct: 581 DFIV 584
>UNIPROTKB|Q90693 [details] [associations]
symbol:PTCH1 "Protein patched homolog 1" species:9031
"Gallus gallus" [GO:0008158 "hedgehog receptor activity"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=NAS] [GO:0005887 "integral to plasma membrane"
evidence=NAS] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156 GO:GO:0005887
GO:GO:0007224 GO:GO:0008158 eggNOG:NOG313603 KO:K06225 EMBL:U40074
IPI:IPI00593923 PIR:T18538 RefSeq:NP_990291.1 UniGene:Gga.474
ProteinModelPortal:Q90693 STRING:Q90693 GeneID:395806
KEGG:gga:395806 CTD:5727 HOGENOM:HOG000231331 HOVERGEN:HBG003801
InParanoid:Q90693 OrthoDB:EOG40S0DT NextBio:20815874
TIGRFAMs:TIGR00918 Uniprot:Q90693
Length = 1442
Score = 215 (80.7 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 45/107 (42%), Positives = 61/107 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ D LP WL FRDWL GLQ++FD D+ G IT + N S+ ++LAYKL
Sbjct: 828 VTYVLLEGDRQLP-KMWLHYFRDWLQGLQDAFDSDWETGKITYSN-YKNGSDDAVLAYKL 885
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG P+D S + RLV DGIINP + + +P++
Sbjct: 886 LVQTGNRAKPIDISQLTKQRLVDADGIINPNAFYIYLTAWVSNDPVA 932
Score = 197 (74.4 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 43/110 (39%), Positives = 74/110 (67%)
Query: 89 IINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEH 148
++ +L +M L+ IKL+ + V+++ S GI + F +I L+FLT IG+++RR L++EH
Sbjct: 1061 LMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHIALAFLTAIGDKNRRAVLALEH 1120
Query: 149 MYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
M++ VL + L+ + +LA SEF FI+R FF +L + ++G+L +VLL
Sbjct: 1121 MFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLL 1170
Score = 38 (18.4 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ ++ LA LLV
Sbjct: 451 AYACLTMLRWDCAKSQGAVGLAGVLLV 477
>UNIPROTKB|Q6UY90 [details] [associations]
symbol:Ptch1 "Protein Ptch1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001658 "branching
involved in ureteric bud morphogenesis" evidence=IEA] [GO:0001843
"neural tube closure" evidence=IEA] [GO:0003007 "heart
morphogenesis" evidence=IEA] [GO:0005113 "patched binding"
evidence=IEA] [GO:0005119 "smoothened binding" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005901 "caveola"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=ISS] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IEA] [GO:0007420 "brain development" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0008201
"heparin binding" evidence=IEA] [GO:0008544 "epidermis development"
evidence=IEA] [GO:0008589 "regulation of smoothened signaling
pathway" evidence=ISS] [GO:0009887 "organ morphogenesis"
evidence=ISS] [GO:0009953 "dorsal/ventral pattern formation"
evidence=ISS] [GO:0010157 "response to chlorate" evidence=IEA]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=IEA] [GO:0015485 "cholesterol binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016485
"protein processing" evidence=ISS] [GO:0021904 "dorsal/ventral
neural tube patterning" evidence=IEA] [GO:0021997 "neural plate
axis specification" evidence=IEA] [GO:0030326 "embryonic limb
morphogenesis" evidence=ISS] [GO:0030332 "cyclin binding"
evidence=IEA] [GO:0030496 "midbody" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032880 "regulation of
protein localization" evidence=IEA] [GO:0035137 "hindlimb
morphogenesis" evidence=IEA] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=ISS] [GO:0042593 "glucose
homeostasis" evidence=IEA] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0043616 "keratinocyte proliferation"
evidence=IEA] [GO:0045668 "negative regulation of osteoblast
differentiation" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0051782 "negative
regulation of cell division" evidence=IEA] [GO:0060037 "pharyngeal
system development" evidence=IEA] [GO:0060603 "mammary gland duct
morphogenesis" evidence=IEA] [GO:0060644 "mammary gland epithelial
cell differentiation" evidence=IEA] [GO:0061005 "cell
differentiation involved in kidney development" evidence=IEA]
[GO:0061053 "somite development" evidence=IEA] [GO:0071397
"cellular response to cholesterol" evidence=IEA] [GO:0072203 "cell
proliferation involved in metanephros development" evidence=IEA]
[GO:0072661 "protein targeting to plasma membrane" evidence=IEA]
[GO:0097108 "hedgehog family protein binding" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004766
Pfam:PF02460 PROSITE:PS50156 RGD:621425 GO:GO:0016021 GO:GO:0007346
GO:GO:0005794 GO:GO:0048471 GO:GO:0043616 GO:GO:0007420
GO:GO:0003007 GO:GO:0008201 GO:GO:0032880 GO:GO:0042593
GO:GO:0015485 GO:GO:0010875 GO:GO:0000122 GO:GO:0009887
GO:GO:0030326 GO:GO:0060037 GO:GO:0001843 GO:GO:0040015
GO:GO:0005901 GO:GO:0043433 GO:GO:0009953 GO:GO:0030496
GO:GO:0060644 GO:GO:0008544 GO:GO:0016485 GO:GO:0050680
GO:GO:0001658 GO:GO:0072661 GO:GO:0035137 GO:GO:0007224
GO:GO:0045668 GO:GO:0008158 GO:GO:0051782 GO:GO:0021904
GO:GO:0021997 GO:GO:0008589 GO:GO:0045879 GO:GO:0060603
GO:GO:0061005 GO:GO:0072203 GO:GO:0010157
GeneTree:ENSGT00680000099777 eggNOG:NOG313603 KO:K06225 CTD:5727
HOGENOM:HOG000231331 HOVERGEN:HBG003801 OrthoDB:EOG40S0DT
TIGRFAMs:TIGR00918 OMA:APDRDYL EMBL:AY357891 IPI:IPI00396901
RefSeq:NP_446018.1 UniGene:Rn.102312 STRING:Q6UY90
Ensembl:ENSRNOT00000026287 GeneID:89830 KEGG:rno:89830
InParanoid:Q6UY90 NextBio:617756 Genevestigator:Q6UY90
Uniprot:Q6UY90
Length = 1434
Score = 213 (80.0 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 815 VKYVMLEENKQLP-QMWLHYFRDWLQGLQDAFDSDWETGRIMPNN-YKNGSDDGVLAYKL 872
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 873 LVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVA 919
Score = 192 (72.6 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 41/110 (37%), Positives = 73/110 (66%)
Query: 89 IINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEH 148
++ +L +M L+ IKL+ + V+++ S GI + F ++ L+FLT IG+++ R L++EH
Sbjct: 1048 LMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEH 1107
Query: 149 MYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
M++ VL + L+ + +LA SEF FI+R FF +L + ++G+L +VLL
Sbjct: 1108 MFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLL 1157
Score = 41 (19.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW + S+ ++ LA LLV
Sbjct: 437 AYACLTMLRWDCSKSQGAVGLAGVLLV 463
>MGI|MGI:105373 [details] [associations]
symbol:Ptch1 "patched homolog 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0001658 "branching
involved in ureteric bud morphogenesis" evidence=IMP] [GO:0001841
"neural tube formation" evidence=IDA] [GO:0001843 "neural tube
closure" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0005113 "patched binding" evidence=IDA]
[GO:0005119 "smoothened binding" evidence=ISO] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005576 "extracellular region"
evidence=TAS] [GO:0005886 "plasma membrane" evidence=ISO;IDA]
[GO:0005887 "integral to plasma membrane" evidence=TAS] [GO:0005901
"caveola" evidence=ISO] [GO:0007165 "signal transduction"
evidence=IDA;TAS] [GO:0007224 "smoothened signaling pathway"
evidence=IGI;IDA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IMP] [GO:0007389 "pattern specification process"
evidence=IMP] [GO:0007420 "brain development" evidence=IMP]
[GO:0008158 "hedgehog receptor activity" evidence=TAS] [GO:0008201
"heparin binding" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0008544 "epidermis development"
evidence=IMP] [GO:0008589 "regulation of smoothened signaling
pathway" evidence=IGI;IMP] [GO:0009887 "organ morphogenesis"
evidence=IMP] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IGI] [GO:0010157 "response to chlorate" evidence=IDA]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=ISO] [GO:0014069 "postsynaptic density" evidence=ISO]
[GO:0015485 "cholesterol binding" evidence=ISO;TAS] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016485 "protein processing" evidence=IMP]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IGI] [GO:0021532 "neural tube patterning" evidence=ISO]
[GO:0021904 "dorsal/ventral neural tube patterning" evidence=IMP]
[GO:0021997 "neural plate axis specification" evidence=IMP]
[GO:0030326 "embryonic limb morphogenesis" evidence=IGI;IMP]
[GO:0030332 "cyclin binding" evidence=ISO;IPI] [GO:0030496
"midbody" evidence=IDA] [GO:0030879 "mammary gland development"
evidence=IMP] [GO:0032403 "protein complex binding" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IDA;IMP]
[GO:0035108 "limb morphogenesis" evidence=ISO] [GO:0035137
"hindlimb morphogenesis" evidence=IMP] [GO:0040008 "regulation of
growth" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0042593
"glucose homeostasis" evidence=IMP] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0043433 "negative
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0043616 "keratinocyte proliferation"
evidence=IMP] [GO:0044294 "dendritic growth cone" evidence=ISO]
[GO:0044295 "axonal growth cone" evidence=ISO] [GO:0045668
"negative regulation of osteoblast differentiation" evidence=ISO]
[GO:0045879 "negative regulation of smoothened signaling pathway"
evidence=IGI;NAS;IMP] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=IMP] [GO:0060037 "pharyngeal system
development" evidence=ISO] [GO:0060603 "mammary gland duct
morphogenesis" evidence=IMP] [GO:0060644 "mammary gland epithelial
cell differentiation" evidence=IMP] [GO:0060831 "smoothened
signaling pathway involved in dorsal/ventral neural tube
patterning" evidence=IMP] [GO:0061005 "cell differentiation
involved in kidney development" evidence=IGI] [GO:0061053 "somite
development" evidence=ISO;IMP] [GO:0071397 "cellular response to
cholesterol" evidence=ISO] [GO:0072203 "cell proliferation involved
in metanephros development" evidence=IMP] [GO:0072372 "primary
cilium" evidence=IDA] [GO:0072661 "protein targeting to plasma
membrane" evidence=ISO] [GO:0097108 "hedgehog family protein
binding" evidence=ISO] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156 MGI:MGI:105373
GO:GO:0007346 GO:GO:0005794 GO:GO:0048471 GO:GO:0005576
GO:GO:0043616 GO:GO:0007420 GO:GO:0005887 GO:GO:0032403
GO:GO:0003007 GO:GO:0008270 GO:GO:0008201 GO:GO:0071397
GO:GO:0032880 GO:GO:0042593 Reactome:REACT_115202 GO:GO:0015485
GO:GO:0010875 GO:GO:0000122 GO:GO:0030326 GO:GO:0060037
GO:GO:0072372 GO:GO:0001843 GO:GO:0040015 GO:GO:0005901
GO:GO:0043433 GO:GO:0030496 GO:GO:0060644 GO:GO:0008544
GO:GO:0016485 GO:GO:0050680 GO:GO:0001658 GO:GO:0072661
GO:GO:0035137 GO:GO:0045668 GO:GO:0008158 GO:GO:0051782
GO:GO:0021997 GO:GO:0045879 GO:GO:0060603 GO:GO:0060831
GO:GO:0061005 GO:GO:0072203 GO:GO:0005113 GO:GO:0061053
GO:GO:0010157 GeneTree:ENSGT00680000099777 eggNOG:NOG313603
KO:K06225 CTD:5727 HOGENOM:HOG000231331 HOVERGEN:HBG003801
OrthoDB:EOG40S0DT TIGRFAMs:TIGR00918 OMA:APDRDYL EMBL:U46155
IPI:IPI00117758 PIR:T30172 RefSeq:NP_032983.1 UniGene:Mm.228798
UniGene:Mm.488634 ProteinModelPortal:Q61115 STRING:Q61115
PhosphoSite:Q61115 PRIDE:Q61115 Ensembl:ENSMUST00000021921
GeneID:19206 KEGG:mmu:19206 UCSC:uc007qxv.1 InParanoid:Q61115
NextBio:295938 Bgee:Q61115 CleanEx:MM_PTCH1 Genevestigator:Q61115
GermOnline:ENSMUSG00000021466 Uniprot:Q61115
Length = 1434
Score = 213 (80.0 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 815 VKYVMLEENKQLP-QMWLHYFRDWLQGLQDAFDSDWETGRIMPNN-YKNGSDDGVLAYKL 872
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 873 LVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVA 919
Score = 193 (73.0 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 53/156 (33%), Positives = 89/156 (57%)
Query: 43 ITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMN 102
I+ W S S +LA LV + NP +I V ++ +L +M L+
Sbjct: 1008 ISLRHWLL-LSISVVLACTFLVCAVFLLNPWTAGII-----VMVLALMTVELFGMMGLIG 1061
Query: 103 IKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLV 162
IKL+ + V+++ S GI + F ++ L+FLT IG+++ R L++EHM++ VL + L+
Sbjct: 1062 IKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVSTLL 1121
Query: 163 AISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
+ +LA SEF FI+R FF +L + ++G+L +VLL
Sbjct: 1122 GVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLL 1157
>UNIPROTKB|Q13635 [details] [associations]
symbol:PTCH1 "Protein patched homolog 1" species:9606 "Homo
sapiens" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IEA] [GO:0008201
"heparin binding" evidence=IEA] [GO:0008544 "epidermis development"
evidence=IEA] [GO:0010157 "response to chlorate" evidence=IEA]
[GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA]
[GO:0030496 "midbody" evidence=IEA] [GO:0032403 "protein complex
binding" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0035137 "hindlimb morphogenesis"
evidence=IEA] [GO:0042593 "glucose homeostasis" evidence=IEA]
[GO:0043616 "keratinocyte proliferation" evidence=IEA] [GO:0050680
"negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0060603 "mammary gland duct morphogenesis"
evidence=IEA] [GO:0060644 "mammary gland epithelial cell
differentiation" evidence=IEA] [GO:0061005 "cell differentiation
involved in kidney development" evidence=IEA] [GO:0072203 "cell
proliferation involved in metanephros development" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001843 "neural tube closure" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0007224
"smoothened signaling pathway" evidence=IEP;ISS] [GO:0009887 "organ
morphogenesis" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0016485 "protein processing"
evidence=ISS] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISS] [GO:0040015 "negative regulation of multicellular
organism growth" evidence=ISS] [GO:0008589 "regulation of
smoothened signaling pathway" evidence=ISS] [GO:0072001 "renal
system development" evidence=IEP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005113 "patched binding" evidence=IPI]
[GO:0097108 "hedgehog family protein binding" evidence=IPI]
[GO:0005119 "smoothened binding" evidence=IPI] [GO:0030332 "cyclin
binding" evidence=IPI] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0045668 "negative
regulation of osteoblast differentiation" evidence=IMP] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IMP] [GO:0045879 "negative regulation of
smoothened signaling pathway" evidence=ISS;TAS] [GO:0071397
"cellular response to cholesterol" evidence=ISS;IMP] [GO:0010875
"positive regulation of cholesterol efflux" evidence=IDA]
[GO:0015485 "cholesterol binding" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IDA]
[GO:0072661 "protein targeting to plasma membrane" evidence=IDA]
[GO:0005901 "caveola" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0021997 "neural plate axis specification"
evidence=ISS] [GO:0007420 "brain development" evidence=ISS]
[GO:0060037 "pharyngeal system development" evidence=IMP]
[GO:0021532 "neural tube patterning" evidence=IMP] [GO:0061053
"somite development" evidence=IMP] [GO:0035108 "limb morphogenesis"
evidence=IMP] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156 GO:GO:0043231
GO:GO:0016021 GO:GO:0007346 GO:GO:0048471 Reactome:REACT_111102
GO:GO:0043616 GO:GO:0007420 GO:GO:0003007 GO:GO:0008201
GO:GO:0071397 GO:GO:0032880 GO:GO:0042593 GO:GO:0015485
GO:GO:0010875 GO:GO:0000122 GO:GO:0009887 GO:GO:0030326
GO:GO:0060037 GO:GO:0001843 GO:GO:0040015 GO:GO:0005901
GO:GO:0043433 GO:GO:0009953 GO:GO:0030496
Pathway_Interaction_DB:hedgehog_glipathway
Pathway_Interaction_DB:hedgehog_2pathway GO:GO:0060644
GO:GO:0008544 GO:GO:0016485 GO:GO:0050680 GO:GO:0001658
GO:GO:0072661 GO:GO:0035137 GO:GO:0007224 GO:GO:0045668
GO:GO:0008158 GO:GO:0051782 GO:GO:0021904
Pathway_Interaction_DB:glypican_3pathway GO:GO:0021997
GO:GO:0045879 Orphanet:93925 Orphanet:93924 Orphanet:280200
Orphanet:93926 Orphanet:220386 Orphanet:280195 GO:GO:0060603
GO:GO:0072001 GO:GO:0021532 GO:GO:0061005 GO:GO:0072203
GO:GO:0061053 GO:GO:0010157 eggNOG:NOG313603 KO:K06225 CTD:5727
HOVERGEN:HBG003801 OrthoDB:EOG40S0DT TIGRFAMs:TIGR00918 EMBL:U59464
EMBL:U43148 EMBL:AL161729 EMBL:AB189436 EMBL:AB189437 EMBL:AB189438
EMBL:AB189439 EMBL:AB189440 EMBL:BC043542 EMBL:AB239329
IPI:IPI00014374 IPI:IPI00643862 IPI:IPI00654901 IPI:IPI00844057
RefSeq:NP_000255.2 RefSeq:NP_001077071.1 RefSeq:NP_001077072.1
RefSeq:NP_001077073.1 RefSeq:NP_001077074.1 RefSeq:NP_001077075.1
RefSeq:NP_001077076.1 UniGene:Hs.494538 ProteinModelPortal:Q13635
SMR:Q13635 DIP:DIP-44940N STRING:Q13635 PhosphoSite:Q13635
DMDM:160415977 PRIDE:Q13635 DNASU:5727 Ensembl:ENST00000331920
Ensembl:ENST00000375274 Ensembl:ENST00000418258
Ensembl:ENST00000421141 Ensembl:ENST00000429896
Ensembl:ENST00000430669 Ensembl:ENST00000437951
Ensembl:ENST00000468211 Ensembl:ENST00000546820
Ensembl:ENST00000547672 Ensembl:ENST00000551845
Ensembl:ENST00000553011 GeneID:5727 KEGG:hsa:5727 UCSC:uc004avk.4
UCSC:uc004avm.4 UCSC:uc010mrr.3 GeneCards:GC09M098205
HGNC:HGNC:9585 HPA:CAB013717 MIM:109400 MIM:601309 MIM:605462
MIM:610828 neXtProt:NX_Q13635 Orphanet:377 PharmGKB:PA33937
InParanoid:Q13635 OMA:APDRDYL PhylomeDB:Q13635 ChiTaRS:PTCH1
GenomeRNAi:5727 NextBio:22266 ArrayExpress:Q13635 Bgee:Q13635
CleanEx:HS_PTCH1 Genevestigator:Q13635 GermOnline:ENSG00000185920
Uniprot:Q13635
Length = 1447
Score = 213 (80.0 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 829 VKYVMLEENKQLP-KMWLHYFRDWLQGLQDAFDSDWETGKIMPNN-YKNGSDDGVLAYKL 886
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 887 LVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVA 933
Score = 196 (74.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 42/110 (38%), Positives = 74/110 (67%)
Query: 89 IINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEH 148
++ +L +M L+ IKL+ + V+++ S GI + F ++ L+FLT IG+++RR L++EH
Sbjct: 1062 LMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEH 1121
Query: 149 MYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
M++ VL + L+ + +LA SEF FI+R FF +L + ++G+L +VLL
Sbjct: 1122 MFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLL 1171
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW + S+ ++ LA LLV
Sbjct: 451 AYACLTMLRWDCSKSQGAVGLAGVLLV 477
>UNIPROTKB|I3LVF2 [details] [associations]
symbol:PTCH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0097108 "hedgehog family protein binding" evidence=IEA]
[GO:0072661 "protein targeting to plasma membrane" evidence=IEA]
[GO:0072203 "cell proliferation involved in metanephros
development" evidence=IEA] [GO:0071397 "cellular response to
cholesterol" evidence=IEA] [GO:0061053 "somite development"
evidence=IEA] [GO:0061005 "cell differentiation involved in kidney
development" evidence=IEA] [GO:0060644 "mammary gland epithelial
cell differentiation" evidence=IEA] [GO:0060603 "mammary gland duct
morphogenesis" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0051782 "negative regulation of cell
division" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0045668
"negative regulation of osteoblast differentiation" evidence=IEA]
[GO:0043616 "keratinocyte proliferation" evidence=IEA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0042593 "glucose homeostasis"
evidence=IEA] [GO:0040015 "negative regulation of multicellular
organism growth" evidence=IEA] [GO:0035137 "hindlimb morphogenesis"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0030496 "midbody" evidence=IEA] [GO:0030332 "cyclin binding"
evidence=IEA] [GO:0030326 "embryonic limb morphogenesis"
evidence=IEA] [GO:0021997 "neural plate axis specification"
evidence=IEA] [GO:0021904 "dorsal/ventral neural tube patterning"
evidence=IEA] [GO:0016485 "protein processing" evidence=IEA]
[GO:0015485 "cholesterol binding" evidence=IEA] [GO:0010875
"positive regulation of cholesterol efflux" evidence=IEA]
[GO:0010157 "response to chlorate" evidence=IEA] [GO:0008589
"regulation of smoothened signaling pathway" evidence=IEA]
[GO:0008544 "epidermis development" evidence=IEA] [GO:0008201
"heparin binding" evidence=IEA] [GO:0007420 "brain development"
evidence=IEA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=IEA] [GO:0005901 "caveola" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005119 "smoothened binding"
evidence=IEA] [GO:0005113 "patched binding" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001843 "neural
tube closure" evidence=IEA] [GO:0001658 "branching involved in
ureteric bud morphogenesis" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004766
Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021 GO:GO:0007346
GO:GO:0005794 GO:GO:0048471 GO:GO:0043616 GO:GO:0007420
GO:GO:0003007 GO:GO:0008201 GO:GO:0032880 GO:GO:0042593
GO:GO:0015485 GO:GO:0010875 GO:GO:0000122 GO:GO:0030326
GO:GO:0060037 GO:GO:0001843 GO:GO:0040015 GO:GO:0005901
GO:GO:0043433 GO:GO:0030496 GO:GO:0060644 GO:GO:0008544
GO:GO:0016485 GO:GO:0050680 GO:GO:0001658 GO:GO:0072661
GO:GO:0035137 GO:GO:0007224 GO:GO:0045668 GO:GO:0008158
GO:GO:0051782 GO:GO:0021904 GO:GO:0021997 GO:GO:0045879
GO:GO:0060603 GO:GO:0061005 GO:GO:0072203 GO:GO:0010157
GeneTree:ENSGT00680000099777 TIGRFAMs:TIGR00918 OMA:APDRDYL
EMBL:FP312856 EMBL:FP326685 Ensembl:ENSSSCT00000029331
Uniprot:I3LVF2
Length = 1453
Score = 213 (80.0 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G I + N S+ +LAYKL
Sbjct: 832 VKYVMLEENKQLP-KMWLHYFRDWLQGLQDAFDSDWETGKIMPNN-YKNGSDDGVLAYKL 889
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV DGIINP + + +P++
Sbjct: 890 LVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDPVA 936
Score = 198 (74.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 52/146 (35%), Positives = 88/146 (60%)
Query: 53 SESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVL 112
S S +LA LV + NP +I V+ ++ +L +M L+ IKL+ + V+
Sbjct: 1034 SISVVLACTFLVCAVFLLNPWTAGII-----VTVLALMTVELFGMMGLIGIKLSAVPVVI 1088
Query: 113 IVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172
++ S GI + F ++ L+FLT IG+++RR L++EHM++ VL + L+ + +LA SEF
Sbjct: 1089 LIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEF 1148
Query: 173 QFILRIFFYMLFGIVLVGLLY-MVLL 197
FI+R FF +L + ++G+L +VLL
Sbjct: 1149 DFIVRYFFAVLAILTILGVLNGLVLL 1174
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW + S+ ++ LA LLV
Sbjct: 454 AYACLTMLRWDCSKSQGAVGLAGVLLV 480
>UNIPROTKB|F1PNE0 [details] [associations]
symbol:PTCH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004766
Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021 GO:GO:0008158
GeneTree:ENSGT00680000099777 TIGRFAMs:TIGR00918 OMA:APDRDYL
EMBL:AAEX03000490 Ensembl:ENSCAFT00000001978 Uniprot:F1PNE0
Length = 1449
Score = 199 (75.1 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 52/146 (35%), Positives = 88/146 (60%)
Query: 53 SESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVL 112
S S +LA LV + NP +I V+ ++ +L +M L+ IKL+ + V+
Sbjct: 1028 SVSVVLACTFLVCAVFLLNPWTAGII-----VTVLALMTVELFGMMGLIGIKLSAVPVVI 1082
Query: 113 IVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISILAFSEF 172
++ S GI + F ++ L+FLT IG+++RR L++EHM++ VL + L+ + +LA SEF
Sbjct: 1083 LIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEF 1142
Query: 173 QFILRIFFYMLFGIVLVGLLY-MVLL 197
FI+R FF +L + ++G+L +VLL
Sbjct: 1143 DFIVRYFFAVLAILTILGVLNGLVLL 1168
Score = 197 (74.4 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 42/107 (39%), Positives = 59/107 (55%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V ++ ++ LP WL FRDWL GLQ++FD D+ G + F S+ +LAYKL
Sbjct: 827 VKYVMLEENKQLP-KMWLHYFRDWLQGLQDAFDSDWETGKSCNK--FKKGSDDGVLAYKL 883
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPIS 109
LVQTG D P+D S + RLV GIINP + + +P++
Sbjct: 884 LVQTGSRDKPIDISQLTKQRLVDAHGIINPSAFYIYLTAWVSNDPVA 930
Score = 41 (19.5 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW + S+ ++ LA LLV
Sbjct: 449 AYACLTMLRWDCSKSQGAVGLAGVLLV 475
>ZFIN|ZDB-GENE-980526-44 [details] [associations]
symbol:ptch2 "patched 2" species:7955 "Danio rerio"
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0048635 "negative regulation of muscle organ
development" evidence=IGI] [GO:0010002 "cardioblast
differentiation" evidence=IGI] [GO:0001649 "osteoblast
differentiation" evidence=IMP] [GO:0031290 "retinal ganglion cell
axon guidance" evidence=IMP] [GO:0009954 "proximal/distal pattern
formation" evidence=IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0007224 "smoothened signaling pathway"
evidence=IMP] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156
ZFIN:ZDB-GENE-980526-44 GO:GO:0016021 GO:GO:0010002 GO:GO:0043010
GO:GO:0001649 GO:GO:0009954 GO:GO:0007224 GO:GO:0008158
GO:GO:0031290 GO:GO:0048635 GeneTree:ENSGT00680000099777
TIGRFAMs:TIGR00918 EMBL:BX649493 IPI:IPI00500992
Ensembl:ENSDART00000077304 ArrayExpress:F1Q8S0 Bgee:F1Q8S0
Uniprot:F1Q8S0
Length = 1442
Score = 199 (75.1 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 44/120 (36%), Positives = 66/120 (55%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V +VK+ + LP WL F+DWL GLQ +FD D+ AG IT + + N +E LAYKL
Sbjct: 819 VKYVVKDGNHKLP-RMWLHYFQDWLKGLQATFDADWEAGKITYDS-YRNGTEDGALAYKL 876
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIH 122
L+QTG P + S + RLV DG+I P++ + + + +P+ + + Y H
Sbjct: 877 LIQTGSKKEPFNYSQLTSRRLVDEDGLIPPEVFYIYLTVWVSNDPLGYA--ASQANFYPH 934
Score = 196 (74.1 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 55/151 (36%), Positives = 87/151 (57%)
Query: 48 WFPNASESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNP 107
WF S S +LA LV + NP +I V ++ +L +M L+ IKL+
Sbjct: 1016 WFL-LSISVVLACTFLVCAILLLNPWTAGVI-----VFILAMMTVELFGIMGLIGIKLSA 1069
Query: 108 ISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAGLILLVAISIL 167
I V+++ S GI + F +I L FLT IG+R+ R +++EHM++ V+ + L+ + +L
Sbjct: 1070 IPVVILIASVGIGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDGAISTLLGVLML 1129
Query: 168 AFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
A SEF FI+R FF +L + L+G+L +VLL
Sbjct: 1130 AGSEFDFIMRYFFAVLAILTLLGILNGLVLL 1160
Score = 39 (18.8 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 7 VKNDDGGLPGNFWLELF--RDWLL 28
+KN G P FW + R W L
Sbjct: 995 IKNYPNGYPFLFWEQYIGLRHWFL 1018
>UNIPROTKB|G3N0B8 [details] [associations]
symbol:PTCH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016020 "membrane" evidence=IEA] [GO:0008158 "hedgehog
receptor activity" evidence=IEA] InterPro:IPR003392 Pfam:PF02460
GO:GO:0016020 GO:GO:0008158 GeneTree:ENSGT00680000099777
EMBL:DAAA02024005 Ensembl:ENSBTAT00000065176 Uniprot:G3N0B8
Length = 384
Score = 193 (73.0 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 41/101 (40%), Positives = 69/101 (68%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVLHAG 157
M L+ IKL+ + V+++ S GI + F ++ L+FLT IG+++RR L++EHM++ VL
Sbjct: 1 MGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGA 60
Query: 158 LILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
+ L+ + +LA SEF FI+R FF +L + ++G+L +VLL
Sbjct: 61 VSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLL 101
>UNIPROTKB|F1NBK3 [details] [associations]
symbol:PTCH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR003392
Pfam:PF02460 GO:GO:0016020 GO:GO:0008158
GeneTree:ENSGT00680000099777 EMBL:AADN02012683 IPI:IPI01017397
Ensembl:ENSGALT00000016479 Uniprot:F1NBK3
Length = 319
Score = 187 (70.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 40/90 (44%), Positives = 54/90 (60%)
Query: 3 VPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKL 62
V +V+ + LP WL F+DWL GLQ +FD+D+ AG IT + + N SE LAYKL
Sbjct: 186 VKYVVREGNHDLP-KMWLHYFQDWLRGLQATFDRDWQAGRITHDS-YRNGSEDGALAYKL 243
Query: 63 LVQTGRVDNPVDKSLIKHNRLVSRDGIINP 92
L+QTG P + + + RLV +GII P
Sbjct: 244 LIQTGNKKEPFNFNQLTTRRLVDENGIIPP 273
>UNIPROTKB|Q9Y6C5 [details] [associations]
symbol:PTCH2 "Protein patched homolog 2" species:9606 "Homo
sapiens" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0042633 "hair cycle" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0097108 "hedgehog family protein
binding" evidence=TAS;IPI] [GO:0005119 "smoothened binding"
evidence=IPI] [GO:0008158 "hedgehog receptor activity"
evidence=TAS] [GO:0045879 "negative regulation of smoothened
signaling pathway" evidence=TAS] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156
GO:GO:0016021 Reactome:REACT_111102 GO:GO:0043588
Pathway_Interaction_DB:hedgehog_2pathway MIM:155255 GO:GO:0008158
EMBL:AL592166 GO:GO:0045879 Orphanet:141276 EMBL:AL136380
GO:GO:0042633 eggNOG:NOG313603 HOGENOM:HOG000231331
HOVERGEN:HBG003801 TIGRFAMs:TIGR00918 MIM:605462 EMBL:AF091501
EMBL:AF087651 EMBL:AF119569 EMBL:AY358555 EMBL:AY359016
EMBL:AY438664 IPI:IPI00419647 IPI:IPI00471943 RefSeq:NP_001159764.1
RefSeq:NP_003729.3 UniGene:Hs.591497 ProteinModelPortal:Q9Y6C5
IntAct:Q9Y6C5 STRING:Q9Y6C5 PhosphoSite:Q9Y6C5 DMDM:12643356
PRIDE:Q9Y6C5 DNASU:8643 Ensembl:ENST00000372192
Ensembl:ENST00000447098 GeneID:8643 KEGG:hsa:8643 UCSC:uc010olf.2
UCSC:uc021omv.1 CTD:8643 GeneCards:GC01M045286 HGNC:HGNC:9586
HPA:HPA046839 MIM:603673 neXtProt:NX_Q9Y6C5 PharmGKB:PA33938
InParanoid:Q9Y6C5 KO:K11101 OMA:CPPSAPN OrthoDB:EOG49CQ6V
PhylomeDB:Q9Y6C5 GenomeRNAi:8643 NextBio:32403 ArrayExpress:Q9Y6C5
Bgee:Q9Y6C5 CleanEx:HS_PTCH2 Genevestigator:Q9Y6C5
GermOnline:ENSG00000117425 GO:GO:0097108 Uniprot:Q9Y6C5
Length = 1203
Score = 193 (73.0 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 39/102 (38%), Positives = 62/102 (60%)
Query: 19 WLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLI 78
WL +R+WL G+Q +FD+D+A+G IT+ + N SE LAYKLL+QTG P+D S +
Sbjct: 781 WLHYYRNWLQGIQAAFDQDWASGRITRHS-YRNGSEDGALAYKLLIQTGDAQEPLDFSQL 839
Query: 79 KHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIVNSSGIY 120
+LV R+G+I P+L + + + +P+ L + + Y
Sbjct: 840 TTRKLVDREGLIPPELFYMGLTVWVSSDPLG--LAASQANFY 879
Score = 170 (64.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 40/106 (37%), Positives = 64/106 (60%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++EH ++
Sbjct: 1002 ELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTTQGSRNLRAAHALEHTFAP 1061
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
V + L+ + +LA S F FI+R FF L + L+GLL+ +VLL
Sbjct: 1062 VTDGAISTLLGLLMLAGSHFDFIVRYFFAALTVLTLLGLLHGLVLL 1107
Score = 42 (19.8 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ S+ LA LLV
Sbjct: 407 AYACVTMLRWDCAQSQGSVGLAGVLLV 433
>UNIPROTKB|E2RHI9 [details] [associations]
symbol:PTCH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004766
Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021 GO:GO:0008158
GeneTree:ENSGT00680000099777 TIGRFAMs:TIGR00918 CTD:8643 KO:K11101
OMA:CPPSAPN EMBL:AAEX03009785 RefSeq:XP_539636.3
Ensembl:ENSCAFT00000007564 GeneID:482519 KEGG:cfa:482519
Uniprot:E2RHI9
Length = 1207
Score = 192 (72.6 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 40/102 (39%), Positives = 62/102 (60%)
Query: 19 WLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLI 78
WL +R+WLLG+Q +FD+D+A+G I++ N SE LAYKLL+QTG P+D S +
Sbjct: 781 WLHYYRNWLLGIQAAFDQDWASGRISRHSC-RNGSEDGALAYKLLLQTGDAQEPLDFSQL 839
Query: 79 KHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIVNSSGIY 120
+LV ++G+I P+L V M + +P+ L + + Y
Sbjct: 840 TTRKLVDKEGLIAPELFYVGLTMWVSSDPLG--LAASQANFY 879
Score = 165 (63.1 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++E ++
Sbjct: 1002 ELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTTQGSRNLRAAHALERTFAP 1061
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
V + L+ + +LA S F FI+R FF +L + L+GLL+ +VLL
Sbjct: 1062 VTDGAVSTLLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLLHGLVLL 1107
Score = 39 (18.8 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ ++ LA LLV
Sbjct: 407 AYACVTMLRWDCAQSQGAVGLAGVLLV 433
>UNIPROTKB|E1B778 [details] [associations]
symbol:PTCH2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043588 "skin development" evidence=IEA] [GO:0042633
"hair cycle" evidence=IEA] [GO:0005119 "smoothened binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004766
Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021 GO:GO:0043588
GO:GO:0008158 GO:GO:0042633 GeneTree:ENSGT00680000099777
TIGRFAMs:TIGR00918 CTD:8643 KO:K11101 OMA:CPPSAPN EMBL:DAAA02009018
IPI:IPI00690516 RefSeq:XP_002686477.1 RefSeq:XP_584648.3
UniGene:Bt.30284 PRIDE:E1B778 Ensembl:ENSBTAT00000033308
GeneID:507948 KEGG:bta:507948 NextBio:20868285 Uniprot:E1B778
Length = 1207
Score = 190 (71.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 19 WLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLI 78
WL +R WL G+Q +FD+D+A+G IT+ + N SE LAYKLLVQTG P+D S +
Sbjct: 781 WLHYYRSWLQGIQAAFDQDWASGRITRHS-YRNGSEDGALAYKLLVQTGDAQEPLDFSQL 839
Query: 79 KHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIVNSSGIY 120
+LV ++G+I P+L + + + +P+ L + + Y
Sbjct: 840 TTKKLVDKEGLIPPELFYMGLTVWVSSDPLG--LAASQANFY 879
Score = 166 (63.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++E ++
Sbjct: 1002 ELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVHVALGFLTAQGSRNLRAARALERTFAP 1061
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
V + L+ + +LA S F FI+R FF +L + L+GLL+ +VLL
Sbjct: 1062 VTDGAISTLLGLLMLAGSNFDFIVRYFFVVLTILTLLGLLHGLVLL 1107
Score = 39 (18.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ ++ LA LLV
Sbjct: 407 AYACVTMLRWDCAQSQGAVGLAGVLLV 433
>MGI|MGI:1095405 [details] [associations]
symbol:Ptch2 "patched homolog 2" species:10090 "Mus
musculus" [GO:0005119 "smoothened binding" evidence=ISO]
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0008544
"epidermis development" evidence=IMP] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0042633 "hair cycle" evidence=IMP] [GO:0043588 "skin
development" evidence=IMP] [GO:0097108 "hedgehog family protein
binding" evidence=ISO] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004766 Pfam:PF02460 PROSITE:PS50156 MGI:MGI:1095405
GO:GO:0016021 GO:GO:0043588 GO:GO:0008158 GO:GO:0042633
EMBL:AL671866 GeneTree:ENSGT00680000099777 eggNOG:NOG313603
HOGENOM:HOG000231331 HOVERGEN:HBG003801 TIGRFAMs:TIGR00918 CTD:8643
KO:K11101 OMA:CPPSAPN OrthoDB:EOG49CQ6V EMBL:AJ133482 EMBL:AJ133483
EMBL:AJ133484 EMBL:AJ133485 EMBL:AB010833 IPI:IPI00131879
PIR:T13952 RefSeq:NP_032984.1 UniGene:Mm.287037
ProteinModelPortal:O35595 STRING:O35595 PhosphoSite:O35595
PRIDE:O35595 DNASU:19207 Ensembl:ENSMUST00000030443 GeneID:19207
KEGG:mmu:19207 UCSC:uc008uhx.1 InParanoid:A2AE82 NextBio:295942
Bgee:O35595 CleanEx:MM_PTCH2 Genevestigator:O35595
GermOnline:ENSMUSG00000028681 Uniprot:O35595
Length = 1182
Score = 187 (70.9 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 19 WLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLI 78
WL +R WL G+Q +FD+D+A+G IT + N SE LAYKLL+QTG P+D S +
Sbjct: 781 WLHYYRSWLQGIQAAFDQDWASGRITCHS-YRNGSEDGALAYKLLIQTGNAQEPLDFSQL 839
Query: 79 KHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLIVNSSGIY 120
+LV ++G+I P+L + + + +P+ L + + Y
Sbjct: 840 TTRKLVDKEGLIPPELFYMGLTVWVSSDPLG--LAASQANFY 879
Score = 167 (63.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 38/105 (36%), Positives = 63/105 (60%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++E ++
Sbjct: 1002 ELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVHVALGFLTSHGSRNLRAASALEQTFAP 1061
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
V + L+ + +LA S F FI+R FF +L + L+GLL+ +LL
Sbjct: 1062 VTDGAVSTLLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLLHGLLL 1106
Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A C+T RW S+ ++ LA LLV
Sbjct: 407 AYACVTMLRWDCAQSQGAVGLAGVLLV 433
>UNIPROTKB|F1LW60 [details] [associations]
symbol:F1LW60 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0008158 "hedgehog receptor activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 Pfam:PF02460 PROSITE:PS50156
GO:GO:0016021 GO:GO:0043588 GO:GO:0008158 GO:GO:0042633
IPI:IPI00870096 Ensembl:ENSRNOT00000033843 Uniprot:F1LW60
Length = 948
Score = 153 (58.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 29 GLQESFDKDYAAGCITQERWFPNASESSILAYKLLVQTGRVDNPVDKSLIKHNRLVSRDG 88
G+Q +FD+D+A+G IT+ + N SE LAYKLL+QTG P+D + + +LV ++G
Sbjct: 561 GIQTAFDQDWASGRITRNS-YRNGSEDGALAYKLLIQTGNAQEPLDFNQLTTRKLVDKEG 619
Query: 89 IINPKLLLVMYLMNIKLNPISCVLIVNSSGIY 120
+I P+L + + + +P+ L + + Y
Sbjct: 620 LIPPELFYMGLTVWVSSDPLG--LAASQANFY 649
Score = 123 (48.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M + IKL+ I V++V S GI + F ++ L FLT G+R+ R ++E ++
Sbjct: 769 ELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTSHGSRNLRAARALEQTFAP 828
Query: 153 VLHAGLILLVAISILAFSEF----QFILRIF 179
V + L+ + +LA S F +F+LR+F
Sbjct: 829 VTDGAVSTLLGLLMLAGSNFDSLVRFLLRVF 859
Score = 40 (19.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 39 AAGCITQERWFPNASESSI-LAYKLLV 64
A CIT RW S+ ++ LA LLV
Sbjct: 320 AYACITMLRWDCAQSQGAVGLAGVLLV 346
>UNIPROTKB|K7ERM4 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9606 "Homo
sapiens" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR003392
Pfam:PF02460 HGNC:HGNC:7897 EMBL:AC026634 EMBL:AC010853
Ensembl:ENST00000586150 Uniprot:K7ERM4
Length = 175
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R R ++ HM S V
Sbjct: 60 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVF- 118
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 119 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 155
>UNIPROTKB|K7ERW2 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9606 "Homo
sapiens" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR003392
Pfam:PF02460 HGNC:HGNC:7897 EMBL:AC026634 EMBL:AC010853
Ensembl:ENST00000591107 Uniprot:K7ERW2
Length = 179
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R R ++ HM S V
Sbjct: 34 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVF- 92
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 93 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 129
>FB|FBgn0261675 [details] [associations]
symbol:Npc1b "Niemann-Pick type C-1b" species:7227
"Drosophila melanogaster" [GO:0007422 "peripheral nervous system
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=ISS]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008158
"hedgehog receptor activity" evidence=IEA] [GO:0030299 "intestinal
cholesterol absorption" evidence=IMP] InterPro:IPR000731
InterPro:IPR003392 Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021
GO:GO:0007391 EMBL:AE014298 GO:GO:0007422 GO:GO:0007417
GO:GO:0030299 GO:GO:0008158 eggNOG:NOG149152
GeneTree:ENSGT00680000099777 KO:K12385 OrthoDB:EOG4JSXMB
OMA:SHVVKYF RefSeq:NP_608417.2 UniGene:Dm.26685
ProteinModelPortal:Q9VRC9 SMR:Q9VRC9 IntAct:Q9VRC9 MINT:MINT-759716
STRING:Q9VRC9 EnsemblMetazoa:FBtr0077239 GeneID:33072
KEGG:dme:Dmel_CG12092 UCSC:CG12092-RA CTD:33072 FlyBase:FBgn0261675
InParanoid:Q9VRC9 PhylomeDB:Q9VRC9 GenomeRNAi:33072 NextBio:781802
ArrayExpress:Q9VRC9 Bgee:Q9VRC9 Uniprot:Q9VRC9
Length = 1254
Score = 130 (50.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 39/111 (35%), Positives = 58/111 (52%)
Query: 89 IINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEH 148
+IN +L +M+ +I LN IS V +V GI + F+++I SF G R R S+
Sbjct: 1116 LIN--MLGMMWAWSINLNAISLVNLVVCVGIGVEFVAHIVRSFKRAEGTAQERARHSLNV 1173
Query: 149 MYSVVLHAGLIL--LVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
S VL +G+ L I +L FS Q +F M GIVL+G + ++L
Sbjct: 1174 TGSSVL-SGITLTKFAGIVVLGFSNSQIFQVFYFRMYLGIVLIGAAHGLIL 1223
Score = 40 (19.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 15 PGNFWLELFRDWL 27
P + WL+ + DWL
Sbjct: 918 PASSWLDDYIDWL 930
Score = 40 (19.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 32 ESFDKDYAAGCITQERWFP 50
ES++ YA CI E P
Sbjct: 233 ESYEDSYACACIDCEESCP 251
>UNIPROTKB|F1SBB5 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9823 "Sus
scrofa" [GO:0071404 "cellular response to low-density lipoprotein
particle stimulus" evidence=IEA] [GO:0071383 "cellular response to
steroid hormone stimulus" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0033344 "cholesterol efflux" evidence=IEA] [GO:0031982
"vesicle" evidence=IEA] [GO:0016242 "negative regulation of
macroautophagy" evidence=IEA] [GO:0015485 "cholesterol binding"
evidence=IEA] [GO:0007628 "adult walking behavior" evidence=IEA]
[GO:0006914 "autophagy" evidence=IEA] [GO:0006897 "endocytosis"
evidence=IEA] [GO:0006486 "protein glycosylation" evidence=IEA]
[GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0005764
"lysosome" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0008158 "hedgehog receptor activity"
evidence=IEA] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783
GO:GO:0005794 GO:GO:0005635 GO:GO:0048471 GO:GO:0005887
GO:GO:0042493 GO:GO:0005768 GO:GO:0006914 GO:GO:0006897
GO:GO:0005764 GO:GO:0045121 GO:GO:0033344 GO:GO:0031982
GO:GO:0007628 GO:GO:0008158 GO:GO:0071383 GO:GO:0016242
GO:GO:0071404 GeneTree:ENSGT00680000099777 OMA:DGYDLVQ
TIGRFAMs:TIGR00917 EMBL:CU657945 Ensembl:ENSSSCT00000004106
Uniprot:F1SBB5
Length = 1277
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/98 (38%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F L+ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ IVL+G
Sbjct: 1199 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAIVLLG 1235
>UNIPROTKB|P56941 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9823 "Sus
scrofa" [GO:0030301 "cholesterol transport" evidence=ISS]
[GO:0005764 "lysosome" evidence=ISS] [GO:0005576 "extracellular
region" evidence=ISS] [GO:0006486 "protein glycosylation"
evidence=ISS] [GO:0015485 "cholesterol binding" evidence=ISS]
[GO:0007041 "lysosomal transport" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0005887
"integral to plasma membrane" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005635 "nuclear
envelope" evidence=ISS] [GO:0042632 "cholesterol homeostasis"
evidence=ISS] [GO:0008206 "bile acid metabolic process"
evidence=ISS] [GO:0031902 "late endosome membrane" evidence=IEA]
[GO:0005765 "lysosomal membrane" evidence=IEA] [GO:0008203
"cholesterol metabolic process" evidence=IEA] [GO:0008158 "hedgehog
receptor activity" evidence=IEA] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156
GO:GO:0005783 GO:GO:0005635 GO:GO:0048471 GO:GO:0005576
GO:GO:0005887 GO:GO:0031902 GO:GO:0005765 GO:GO:0008206
GO:GO:0006486 GO:GO:0008203 GO:GO:0005764 GO:GO:0015485
GO:GO:0042632 GO:GO:0007041 GO:GO:0030301 GO:GO:0008158
eggNOG:NOG149152 KO:K12385 CTD:4864 HOVERGEN:HBG003913
OrthoDB:EOG46DM1Z TIGRFAMs:TIGR00917 HOGENOM:HOG000036674
EMBL:AF169635 RefSeq:NP_999487.1 UniGene:Ssc.1533
ProteinModelPortal:P56941 STRING:P56941 GeneID:397591
KEGG:ssc:397591 Uniprot:P56941
Length = 1277
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/98 (38%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F L+ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ IVL+G
Sbjct: 1199 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAIVLLG 1235
>UNIPROTKB|F1NQT4 [details] [associations]
symbol:NPC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005764 "lysosome"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=IEA] [GO:0006486 "protein glycosylation" evidence=IEA]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0006914 "autophagy"
evidence=IEA] [GO:0007628 "adult walking behavior" evidence=IEA]
[GO:0015485 "cholesterol binding" evidence=IEA] [GO:0016242
"negative regulation of macroautophagy" evidence=IEA] [GO:0031982
"vesicle" evidence=IEA] [GO:0033344 "cholesterol efflux"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0045121 "membrane raft" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0071383 "cellular response
to steroid hormone stimulus" evidence=IEA] [GO:0071404 "cellular
response to low-density lipoprotein particle stimulus"
evidence=IEA] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783
GO:GO:0005794 GO:GO:0005635 GO:GO:0048471 GO:GO:0005887
GO:GO:0042493 GO:GO:0005768 GO:GO:0006914 GO:GO:0006897
GO:GO:0005764 GO:GO:0045121 GO:GO:0033344 GO:GO:0031982
GO:GO:0008158 GO:GO:0071383 GO:GO:0016242 GO:GO:0071404
GeneTree:ENSGT00680000099777 OMA:DGYDLVQ TIGRFAMs:TIGR00917
EMBL:AADN02021353 IPI:IPI00572808 Ensembl:ENSGALT00000024240
Uniprot:F1NQT4
Length = 1278
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S++ +F ++ G+R R ++ HM S V
Sbjct: 1141 VMWLWGISLNAVSLVNLVMSCGIAVEFCSHVTRAFTVSTKGSRVERAEEALSHMGSSVF- 1199
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAFS+ Q I +IF++ ++ +VL+G
Sbjct: 1200 SGITLTKFGGIVVLAFSKSQ-IFKIFYFRMYLAMVLLG 1236
>UNIPROTKB|Q8MI49 [details] [associations]
symbol:Q8MI49 "Mutant Niemann-Pick C1" species:9685 "Felis
catus" [GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005887 "integral to
plasma membrane" evidence=ISS] [GO:0007041 "lysosomal transport"
evidence=ISS] [GO:0008206 "bile acid metabolic process"
evidence=ISS] [GO:0042632 "cholesterol homeostasis" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783 GO:GO:0005635
GO:GO:0048471 GO:GO:0005887 GO:GO:0008206 GO:GO:0042632
GO:GO:0007041 GO:GO:0030301 GO:GO:0008158 eggNOG:NOG149152
HOVERGEN:HBG003913 TIGRFAMs:TIGR00917 EMBL:AF503633
ProteinModelPortal:Q8MI49 STRING:Q8MI49 Uniprot:Q8MI49
Length = 1276
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R +R ++ HM S V
Sbjct: 1139 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRAQRAEEALAHMGSSVF- 1197
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 1198 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 1234
>UNIPROTKB|Q8MKD8 [details] [associations]
symbol:Q8MKD8 "Niemann-Pick C1" species:9685 "Felis catus"
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005887 "integral to
plasma membrane" evidence=ISS] [GO:0007041 "lysosomal transport"
evidence=ISS] [GO:0008206 "bile acid metabolic process"
evidence=ISS] [GO:0042632 "cholesterol homeostasis" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783 GO:GO:0005635
GO:GO:0048471 GO:GO:0005887 GO:GO:0008206 GO:GO:0042632
GO:GO:0007041 GO:GO:0030301 GO:GO:0008158 HOVERGEN:HBG003913
TIGRFAMs:TIGR00917 EMBL:AF503634 ProteinModelPortal:Q8MKD8
STRING:Q8MKD8 Uniprot:Q8MKD8
Length = 1276
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R +R ++ HM S V
Sbjct: 1139 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRAQRAEEALAHMGSSVF- 1197
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 1198 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 1234
>UNIPROTKB|Q9N0Q0 [details] [associations]
symbol:NPC1 "Niemann-Pick type C1 disease protein"
species:9685 "Felis catus" [GO:0005635 "nuclear envelope"
evidence=ISS] [GO:0005783 "endoplasmic reticulum" evidence=ISS]
[GO:0005887 "integral to plasma membrane" evidence=ISS] [GO:0007041
"lysosomal transport" evidence=ISS] [GO:0008206 "bile acid
metabolic process" evidence=ISS] [GO:0042632 "cholesterol
homeostasis" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783
GO:GO:0005635 GO:GO:0048471 GO:GO:0005887 GO:GO:0008206
GO:GO:0042632 GO:GO:0007041 GO:GO:0030301 GO:GO:0008158 CTD:4864
HOVERGEN:HBG003913 TIGRFAMs:TIGR00917 EMBL:AF258783
RefSeq:NP_001009829.2 ProteinModelPortal:Q9N0Q0 STRING:Q9N0Q0
GeneID:493693 KEGG:fca:493693 Uniprot:Q9N0Q0
Length = 1276
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R +R ++ HM S V
Sbjct: 1139 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRAQRAEEALAHMGSSVF- 1197
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 1198 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 1234
>UNIPROTKB|Q9JLG3 [details] [associations]
symbol:NPC1 "Niemann-Pick type C1 protein" species:10029
"Cricetulus griseus" [GO:0005635 "nuclear envelope" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005887
"integral to plasma membrane" evidence=ISS] [GO:0007041 "lysosomal
transport" evidence=ISS] [GO:0008206 "bile acid metabolic process"
evidence=ISS] [GO:0042632 "cholesterol homeostasis" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783 GO:GO:0005635
GO:GO:0048471 GO:GO:0005887 GO:GO:0008206 GO:GO:0042632
GO:GO:0007041 GO:GO:0030301 GO:GO:0008158 CTD:4864
HOVERGEN:HBG003913 TIGRFAMs:TIGR00917 EMBL:AF182744
RefSeq:NP_001233616.1 ProteinModelPortal:Q9JLG3 GeneID:100689424
Uniprot:Q9JLG3
Length = 1277
Score = 128 (50.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L +I LN +S V +V S GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1140 VMWLWDISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I IF++ ++ IVL+G
Sbjct: 1199 SGITLTKFGGIVVLAFAKSQ-IFEIFYFRMYLAIVLLG 1235
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 13 GLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNAS--ESSILAYKLLVQTGRVD 70
G + W++ + DW+ Q S + Y A T + F NAS + + + + L G+
Sbjct: 936 GFAPSSWIDDYFDWVAP-QSSCCRLYNA---THQ--FCNASVIDPTCIRCRPLTPEGK-Q 988
Query: 71 NPVDKSLIKHNRLVSRDGIINPK 93
P K +K + D NPK
Sbjct: 989 RPQGKEFMKFLPMFLSDNP-NPK 1010
>UNIPROTKB|B4DET3 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9606 "Homo
sapiens" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030301
"cholesterol transport" evidence=IEA] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156
GO:GO:0016021 GO:GO:0030301 GO:GO:0008158 UniGene:Hs.464779
UniGene:Hs.715623 HGNC:HGNC:7897 HOVERGEN:HBG003913
TIGRFAMs:TIGR00917 HOGENOM:HOG000036674 EMBL:AC026634 EMBL:AC010853
EMBL:AK293779 IPI:IPI00646796 STRING:B4DET3 Ensembl:ENST00000412552
UCSC:uc010xaz.2 Uniprot:B4DET3
Length = 960
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R R ++ HM S V
Sbjct: 823 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVF- 881
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 882 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 918
>UNIPROTKB|K7EQ23 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9606 "Homo
sapiens" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030301
"cholesterol transport" evidence=IEA] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156
HGNC:HGNC:7897 TIGRFAMs:TIGR00917 EMBL:AC026634 EMBL:AC010853
Ensembl:ENST00000591051 Uniprot:K7EQ23
Length = 971
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R R ++ HM S V
Sbjct: 834 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVF- 892
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 893 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 929
>UNIPROTKB|B0JYK2 [details] [associations]
symbol:NPC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071404 "cellular response to low-density lipoprotein
particle stimulus" evidence=IEA] [GO:0071383 "cellular response to
steroid hormone stimulus" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0033344 "cholesterol efflux" evidence=IEA] [GO:0031982
"vesicle" evidence=IEA] [GO:0016242 "negative regulation of
macroautophagy" evidence=IEA] [GO:0015485 "cholesterol binding"
evidence=IEA] [GO:0007628 "adult walking behavior" evidence=IEA]
[GO:0006914 "autophagy" evidence=IEA] [GO:0006897 "endocytosis"
evidence=IEA] [GO:0006486 "protein glycosylation" evidence=IEA]
[GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0005764
"lysosome" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0008158 "hedgehog receptor activity"
evidence=IEA] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783
GO:GO:0005794 GO:GO:0005635 GO:GO:0048471 GO:GO:0005887
GO:GO:0042493 GO:GO:0005768 GO:GO:0006914 GO:GO:0006897
GO:GO:0005764 GO:GO:0045121 GO:GO:0033344 GO:GO:0031982
GO:GO:0007628 GO:GO:0008158 GO:GO:0071383 GO:GO:0016242
GO:GO:0071404 eggNOG:NOG149152 GeneTree:ENSGT00680000099777
OMA:DGYDLVQ HOVERGEN:HBG003913 OrthoDB:EOG46DM1Z TIGRFAMs:TIGR00917
HOGENOM:HOG000036674 EMBL:DAAA02056610 EMBL:DAAA02056611
EMBL:BC151276 IPI:IPI00698823 UniGene:Bt.7157 STRING:B0JYK2
Ensembl:ENSBTAT00000020219 InParanoid:B0JYK2 Uniprot:B0JYK2
Length = 1277
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSTKGSRVERAEEALSHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 1199 SGITLTKFGGIIVLAFAKSQ-IFQIFYFRMYLAMVLLG 1235
>UNIPROTKB|F1PB50 [details] [associations]
symbol:NPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071404 "cellular response to low-density
lipoprotein particle stimulus" evidence=IEA] [GO:0071383 "cellular
response to steroid hormone stimulus" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0033344 "cholesterol efflux" evidence=IEA]
[GO:0031982 "vesicle" evidence=IEA] [GO:0016242 "negative
regulation of macroautophagy" evidence=IEA] [GO:0015485
"cholesterol binding" evidence=IEA] [GO:0007628 "adult walking
behavior" evidence=IEA] [GO:0006914 "autophagy" evidence=IEA]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0006486 "protein
glycosylation" evidence=IEA] [GO:0005887 "integral to plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005768
"endosome" evidence=IEA] [GO:0005764 "lysosome" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0008158 "hedgehog
receptor activity" evidence=IEA] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156
GO:GO:0005783 GO:GO:0005794 GO:GO:0005635 GO:GO:0048471
GO:GO:0005887 GO:GO:0042493 GO:GO:0005768 GO:GO:0006914
GO:GO:0006897 GO:GO:0005764 GO:GO:0045121 GO:GO:0033344
GO:GO:0031982 GO:GO:0007628 GO:GO:0008158 GO:GO:0071383
GO:GO:0016242 GO:GO:0071404 GeneTree:ENSGT00680000099777
OMA:DGYDLVQ TIGRFAMs:TIGR00917 EMBL:AAEX03005455
Ensembl:ENSCAFT00000028892 Uniprot:F1PB50
Length = 1277
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSAKGSRVERAEEALSHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLFGIVLVG 190
+G+ L I +LAF++ Q +F M +VL+G
Sbjct: 1199 SGITLTKFGGIVVLAFAKSQIFQVFYFRMYLAMVLLG 1235
>UNIPROTKB|O15118 [details] [associations]
symbol:NPC1 "Niemann-Pick C1 protein" species:9606 "Homo
sapiens" [GO:0008158 "hedgehog receptor activity" evidence=IEA]
[GO:0008203 "cholesterol metabolic process" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0006897
"endocytosis" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0016242 "negative regulation of macroautophagy"
evidence=IEA] [GO:0031982 "vesicle" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0071383 "cellular response to steroid hormone
stimulus" evidence=IEA] [GO:0071404 "cellular response to
low-density lipoprotein particle stimulus" evidence=IEA]
[GO:0005765 "lysosomal membrane" evidence=IEA] [GO:0031902 "late
endosome membrane" evidence=IEA] [GO:0007041 "lysosomal transport"
evidence=ISS] [GO:0008206 "bile acid metabolic process"
evidence=ISS] [GO:0042632 "cholesterol homeostasis"
evidence=ISS;IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005887 "integral to plasma membrane" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0030301 "cholesterol transport" evidence=IDA]
[GO:0005576 "extracellular region" evidence=ISS] [GO:0005764
"lysosome" evidence=ISS] [GO:0015485 "cholesterol binding"
evidence=IDA] [GO:0006486 "protein glycosylation" evidence=IDA]
[GO:0006914 "autophagy" evidence=IGI] [GO:0004872 "receptor
activity" evidence=TAS] [GO:0004888 "transmembrane signaling
receptor activity" evidence=TAS] [GO:0015248 "sterol transporter
activity" evidence=TAS] [GO:0016021 "integral to membrane"
evidence=TAS] [GO:0033344 "cholesterol efflux" evidence=IDA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783 GO:GO:0005794
GO:GO:0005635 GO:GO:0048471 GO:GO:0005576 GO:GO:0005887
GO:GO:0031902 GO:GO:0005765 GO:GO:0042493 GO:GO:0008206
GO:GO:0006914 GO:GO:0006486 GO:GO:0008203 GO:GO:0006897
GO:GO:0005764 GO:GO:0045121 GO:GO:0015485 GO:GO:0033344
GO:GO:0042632 GO:GO:0031982 GO:GO:0004888 GO:GO:0007041
GO:GO:0007628 GO:GO:0008158 GO:GO:0071383 GO:GO:0016242
GO:GO:0015248 GO:GO:0071404 eggNOG:NOG149152 KO:K12385 OMA:DGYDLVQ
EMBL:AF002020 EMBL:AF157379 EMBL:AF157365 EMBL:AF157366
EMBL:AF157367 EMBL:AF157368 EMBL:AF157369 EMBL:AF157370
EMBL:AF157371 EMBL:AF157372 EMBL:AF157373 EMBL:AF157374
EMBL:AF157375 EMBL:AF157376 EMBL:AF157377 EMBL:AF157378
EMBL:AF338230 EMBL:AH009108 EMBL:BC063302 IPI:IPI00005107
RefSeq:NP_000262.2 UniGene:Hs.464779 UniGene:Hs.715623 PDB:3GKH
PDB:3GKI PDB:3GKJ PDBsum:3GKH PDBsum:3GKI PDBsum:3GKJ
ProteinModelPortal:O15118 SMR:O15118 IntAct:O15118 STRING:O15118
TCDB:2.A.6.6.1 PhosphoSite:O15118 PaxDb:O15118 PeptideAtlas:O15118
PRIDE:O15118 Ensembl:ENST00000269228 GeneID:4864 KEGG:hsa:4864
UCSC:uc002kum.4 CTD:4864 GeneCards:GC18M021111 H-InvDB:HIX0039703
HGNC:HGNC:7897 HPA:HPA026618 MIM:257220 MIM:607623
neXtProt:NX_O15118 Orphanet:216986 Orphanet:216981 Orphanet:216978
Orphanet:216975 Orphanet:216972 PharmGKB:PA31698 HOVERGEN:HBG003913
InParanoid:O15118 OrthoDB:EOG46DM1Z PhylomeDB:O15118
ChEMBL:CHEMBL1293277 EvolutionaryTrace:O15118 GenomeRNAi:4864
NextBio:18738 ArrayExpress:O15118 Bgee:O15118 CleanEx:HS_NPC1
Genevestigator:O15118 GermOnline:ENSG00000141458 TIGRFAMs:TIGR00917
Uniprot:O15118
Length = 1278
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F + G+R R ++ HM S V
Sbjct: 1141 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVF- 1199
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 1200 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 1236
>DICTYBASE|DDB_G0269158 [details] [associations]
symbol:npcA "Niemann-Pick C type protein"
species:44689 "Dictyostelium discoideum" [GO:0030301 "cholesterol
transport" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0008158
"hedgehog receptor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 dictyBase:DDB_G0269158
GO:GO:0016021 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0030301 GO:GO:0008158 eggNOG:NOG149152 KO:K12385
TIGRFAMs:TIGR00917 ProtClustDB:CLSZ2430881 EMBL:AF202725
EMBL:AF202726 RefSeq:XP_646800.1 ProteinModelPortal:Q9TVK6
EnsemblProtists:DDB0191127 GeneID:8617773 KEGG:ddi:DDB_G0269158
InParanoid:Q9TVK6 OMA:SHVVKYF Uniprot:Q9TVK6
Length = 1342
Score = 124 (48.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 36/115 (31%), Positives = 63/115 (54%)
Query: 88 GIINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGN--RDRRVRLS 145
G+I LL +M L NI LN +S V +V + GI I F +I +F+ + RD++ + +
Sbjct: 1199 GMICVDLLGIMALWNISLNAVSVVNVVMAIGIGIEFCVHIASTFINAPKHFSRDQKAKYA 1258
Query: 146 IEHMYSVVLHAGLIL--LVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
+ M S ++ +G+ + L+ + +L FS + +F M IV +G L+ +V L
Sbjct: 1259 VTEMGSSII-SGIFITKLLGVVVLGFSTSEIFTVYYFRMYLSIVFLGGLHGLVFL 1312
>ZFIN|ZDB-GENE-030131-3161 [details] [associations]
symbol:npc1 "Niemann-Pick disease, type C1"
species:7955 "Danio rerio" [GO:0030301 "cholesterol transport"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IDA] [GO:0006869 "lipid transport" evidence=ISS]
[GO:0055113 "epiboly involved in gastrulation with mouth forming
second" evidence=IMP] [GO:0035855 "megakaryocyte development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 ZFIN:ZDB-GENE-030131-3161
GO:GO:0016021 GO:GO:0006869 GO:GO:0001666 GO:GO:0055113
GO:GO:0030301 GO:GO:0008158 GeneTree:ENSGT00680000099777
TIGRFAMs:TIGR00917 EMBL:FP236166 EMBL:FP245481 IPI:IPI00861743
Ensembl:ENSDART00000103596 ArrayExpress:F1QNG7 Bgee:F1QNG7
Uniprot:F1QNG7
Length = 1276
Score = 122 (48.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 37/98 (37%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L +I LN +S V +V S GI + F S+I +F ++ +R R ++ HM S V
Sbjct: 1140 VMWLWSISLNAVSLVNLVMSCGISVEFCSHIVRAFSISTRSSRVERAEEALAHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I ILA S+ Q I +IF++ ++ IVL+G
Sbjct: 1199 SGITLTKFGGILILALSKSQ-IFQIFYFRMYLAIVLLG 1235
>UNIPROTKB|Q9TT75 [details] [associations]
symbol:NPC1 "Niemann-Pick type C1 disease protein"
species:9986 "Oryctolagus cuniculus" [GO:0005635 "nuclear envelope"
evidence=ISS] [GO:0005783 "endoplasmic reticulum" evidence=ISS]
[GO:0005887 "integral to plasma membrane" evidence=ISS] [GO:0007041
"lysosomal transport" evidence=ISS] [GO:0008206 "bile acid
metabolic process" evidence=ISS] [GO:0042632 "cholesterol
homeostasis" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156 GO:GO:0005783
GO:GO:0005794 GO:GO:0005635 GO:GO:0048471 GO:GO:0005887
GO:GO:0042493 GO:GO:0008206 GO:GO:0005768 GO:GO:0006914
GO:GO:0006897 GO:GO:0005764 GO:GO:0045121 GO:GO:0033344
GO:GO:0042632 GO:GO:0031982 GO:GO:0007041 GO:GO:0007628
GO:GO:0008158 GO:GO:0071383 GO:GO:0016242 GO:GO:0071404
eggNOG:NOG149152 CTD:4864 HOVERGEN:HBG003913 OrthoDB:EOG46DM1Z
TIGRFAMs:TIGR00917 HOGENOM:HOG000036674 EMBL:AF202730
RefSeq:NP_001075540.1 UniGene:Ocu.2405 ProteinModelPortal:Q9TT75
STRING:Q9TT75 GeneID:100008746 Uniprot:Q9TT75
Length = 1286
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1149 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSGKGSRVARAEEALAHMGSSVF- 1207
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I +IF++ ++ +VL+G
Sbjct: 1208 SGITLTKFGGIVVLAFAKSQ-IFQIFYFRMYLAMVLLG 1244
>MGI|MGI:1097712 [details] [associations]
symbol:Npc1 "Niemann Pick type C1" species:10090 "Mus
musculus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=ISO;IDA] [GO:0005764 "lysosome" evidence=IDA] [GO:0005768
"endosome" evidence=IDA] [GO:0005783 "endoplasmic reticulum"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005887 "integral
to plasma membrane" evidence=ISO] [GO:0006486 "protein
glycosylation" evidence=ISO;IDA] [GO:0006629 "lipid metabolic
process" evidence=IEA] [GO:0006897 "endocytosis" evidence=IMP]
[GO:0006914 "autophagy" evidence=ISO] [GO:0007628 "adult walking
behavior" evidence=IGI] [GO:0008158 "hedgehog receptor activity"
evidence=IEA] [GO:0008202 "steroid metabolic process" evidence=IEA]
[GO:0008203 "cholesterol metabolic process" evidence=IEA]
[GO:0015485 "cholesterol binding" evidence=ISO] [GO:0016020
"membrane" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016242 "negative regulation of macroautophagy"
evidence=IGI;IMP] [GO:0030301 "cholesterol transport" evidence=ISO]
[GO:0031982 "vesicle" evidence=IDA] [GO:0033344 "cholesterol
efflux" evidence=ISO;IMP] [GO:0042493 "response to drug"
evidence=IDA] [GO:0042632 "cholesterol homeostasis" evidence=ISO]
[GO:0045121 "membrane raft" evidence=IDA] [GO:0046686 "response to
cadmium ion" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] [GO:0071383 "cellular response to steroid
hormone stimulus" evidence=IDA] [GO:0071404 "cellular response to
low-density lipoprotein particle stimulus" evidence=IDA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 EMBL:AF003348 MGI:MGI:1097712
GO:GO:0005783 GO:GO:0005886 GO:GO:0005794 GO:GO:0005635
GO:GO:0048471 GO:GO:0005576 GO:GO:0005887 GO:GO:0031902
GO:GO:0005765 GO:GO:0042493 GO:GO:0008206 GO:GO:0005768
GO:GO:0006914 GO:GO:0006486 GO:GO:0008203 GO:GO:0006897
GO:GO:0005764 GO:GO:0045121 GO:GO:0015485 GO:GO:0033344
GO:GO:0042632 GO:GO:0031982 GO:GO:0007041 GO:GO:0007628
GO:GO:0008158 GO:GO:0071383 GO:GO:0016242 GO:GO:0071404
eggNOG:NOG149152 GeneTree:ENSGT00680000099777 KO:K12385 OMA:DGYDLVQ
CTD:4864 HOVERGEN:HBG003913 OrthoDB:EOG46DM1Z TIGRFAMs:TIGR00917
EMBL:AF003349 EMBL:AC102096 EMBL:AC102248 EMBL:CH466622
IPI:IPI00132600 PIR:T30188 RefSeq:NP_032746.2 UniGene:Mm.3484
ProteinModelPortal:O35604 SMR:O35604 STRING:O35604
PhosphoSite:O35604 PaxDb:O35604 PRIDE:O35604
Ensembl:ENSMUST00000025279 GeneID:18145 KEGG:mmu:18145
HOGENOM:HOG000036674 InParanoid:O35604 ChiTaRS:NPC1 CleanEx:MM_NPC1
Genevestigator:O35604 GermOnline:ENSMUSG00000024413 Uniprot:O35604
Length = 1277
Score = 124 (48.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V S GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1140 VMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVF- 1198
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I IF++ ++ +VL+G
Sbjct: 1199 SGITLTKFGGIVVLAFAKSQ-IFEIFYFRMYLAMVLLG 1235
Score = 36 (17.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 13 GLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNAS--ESSILAYKLLVQTGRVD 70
G + W++ + DW+ Q S + Y +T + F NAS + + + + L G+
Sbjct: 936 GFAPSSWIDDYFDWV-SPQSSCCRLYN---VTHQ--FCNASVMDPTCVRCRPLTPEGK-Q 988
Query: 71 NPVDKSLIKHNRLVSRDGIINPK 93
P K +K + D NPK
Sbjct: 989 RPQGKEFMKFLPMFLSDNP-NPK 1010
>UNIPROTKB|G3V7K5 [details] [associations]
symbol:Cdig2 "RCG41239" species:10116 "Rattus norvegicus"
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005764 "lysosome"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=IEA] [GO:0006486 "protein glycosylation" evidence=IEA]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0006914 "autophagy"
evidence=IEA] [GO:0007628 "adult walking behavior" evidence=IEA]
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0015485
"cholesterol binding" evidence=IEA] [GO:0016242 "negative
regulation of macroautophagy" evidence=IEA] [GO:0031982 "vesicle"
evidence=IEA] [GO:0033344 "cholesterol efflux" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045121 "membrane
raft" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0071383 "cellular response to steroid hormone
stimulus" evidence=IEA] [GO:0071404 "cellular response to
low-density lipoprotein particle stimulus" evidence=IEA]
InterPro:IPR000731 InterPro:IPR003392 InterPro:IPR004765
Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021 GO:GO:0030301
GO:GO:0008158 GeneTree:ENSGT00680000099777 KO:K12385 OMA:DGYDLVQ
CTD:4864 TIGRFAMs:TIGR00917 EMBL:CH474073 RefSeq:NP_705888.2
UniGene:Rn.115253 PRIDE:G3V7K5 Ensembl:ENSRNOT00000016167
GeneID:266732 KEGG:rno:266732 NextBio:624576 Uniprot:G3V7K5
Length = 1278
Score = 121 (47.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSF-LTCIGNRDRRVRLSIEHMYSVVLH 155
VM+L I LN +S V +V + GI + F S+I +F ++ G+R R ++ HM S V
Sbjct: 1141 VMWLWGISLNAVSLVNLVMTCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVF- 1199
Query: 156 AGLILLV--AISILAFSEFQFILRIFFYMLF-GIVLVG 190
+G+ L I +LAF++ Q I IF++ ++ +VL+G
Sbjct: 1200 SGITLTKFGGIVVLAFAKSQ-IFEIFYFRMYLAMVLLG 1236
Score = 36 (17.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 13 GLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNAS--ESSILAYKLLVQTGRVD 70
G + W++ + DW+ Q S + Y +T + F NAS + + + + L G+
Sbjct: 937 GFAPSSWIDDYFDWV-SPQSSCCRLYN---VTHQ--FCNASVIDPTCVRCRPLTPEGK-Q 989
Query: 71 NPVDKSLIKHNRLVSRDGIINPK 93
P K +K + D NPK
Sbjct: 990 RPQGKEFMKFLPMFLSDNP-NPK 1011
>DICTYBASE|DDB_G0276657 [details] [associations]
symbol:npcB "Niemann-Pick C type protein"
species:44689 "Dictyostelium discoideum" [GO:0030301 "cholesterol
transport" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0008158
"hedgehog receptor activity" evidence=IEA] InterPro:IPR000731
InterPro:IPR003392 InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156
dictyBase:DDB_G0276657 GO:GO:0016021 GO:GO:0030301 GO:GO:0008158
EMBL:AAFI02000018 eggNOG:NOG149152 TIGRFAMs:TIGR00917
RefSeq:XP_643013.1 ProteinModelPortal:Q551C5
EnsemblProtists:DDB0202935 GeneID:8620617 KEGG:ddi:DDB_G0276657
InParanoid:Q551C5 OMA:LTIWRET ProtClustDB:CLSZ2430881
Uniprot:Q551C5
Length = 1397
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 35/109 (32%), Positives = 61/109 (55%)
Query: 94 LLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGN--RDRRVRLSIEHMYS 151
LL VM L +I LN IS V ++ + GI I F +I +F+ + RD +V+ +I M +
Sbjct: 1266 LLAVMTLWDISLNAISVVNLIMAVGISIEFCVHIASTFIRSPKHYSRDEKVKFAISEMGA 1325
Query: 152 VVLHAGLIL--LVAISILAFSEFQFILRIFFYMLFGIVLVGLLY-MVLL 197
+ +G+ + L+ +LAFS+ + + +F M I L+ ++ +VLL
Sbjct: 1326 NIF-SGIFITKLLGCVVLAFSKSEIFIIYYFKMYISICLLAAVHGLVLL 1373
>FB|FBgn0024320 [details] [associations]
symbol:Npc1a "Niemann-Pick type C-1a" species:7227
"Drosophila melanogaster" [GO:0005765 "lysosomal membrane"
evidence=ISS] [GO:0030301 "cholesterol transport" evidence=ISS]
[GO:0008158 "hedgehog receptor activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0007591 "molting cycle,
chitin-based cuticle" evidence=IMP] [GO:0016125 "sterol metabolic
process" evidence=IMP] [GO:0045456 "ecdysteroid biosynthetic
process" evidence=IMP] [GO:0032374 "regulation of cholesterol
transport" evidence=IDA] [GO:0007291 "sperm individualization"
evidence=IMP] InterPro:IPR000731 InterPro:IPR003392
InterPro:IPR004765 Pfam:PF02460 PROSITE:PS50156 GO:GO:0016021
GO:GO:0007291 GO:GO:0007591 GO:GO:0032374 GO:GO:0016125
GO:GO:0030301 GO:GO:0008158 GO:GO:0045456 eggNOG:NOG149152
TIGRFAMs:TIGR00917 ChiTaRS:NPC1 EMBL:BT009977
ProteinModelPortal:Q7YU59 SMR:Q7YU59 STRING:Q7YU59 PaxDb:Q7YU59
PRIDE:Q7YU59 FlyBase:FBgn0024320 InParanoid:Q7YU59
OrthoDB:EOG4JSXMB ArrayExpress:Q7YU59 Bgee:Q7YU59 Uniprot:Q7YU59
Length = 1287
Score = 119 (46.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 97 VMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTC--IGNRDRRVRLSIEHMYSVVL 154
+MY NI LN +S V +V + GI + F S++ SF T + DR S+ M S +
Sbjct: 1150 LMYYWNISLNAVSLVNLVMAVGISVEFCSHLVHSFATSKSVSQIDRAAD-SLSKMGSSIF 1208
Query: 155 HAGLIL--LVAISILAFSEFQFILRIFFYMLFGIVLVG 190
+G+ L I +LAF++ Q +F M GIV++G
Sbjct: 1209 -SGITLTKFAGILVLAFAKSQIFQVFYFRMYLGIVVIG 1245
Score = 36 (17.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 15 PGNFWLELFRDWLLGLQE--SFDKDYAAGCITQE 46
P + W++ + DW + KD C Q+
Sbjct: 939 PASSWIDDYFDWAAAASSCCKYRKDSGDFCPHQD 972
>UNIPROTKB|J9PBB6 [details] [associations]
symbol:J9PBB6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016020 "membrane" evidence=IEA] [GO:0008158
"hedgehog receptor activity" evidence=IEA] InterPro:IPR003392
Pfam:PF02460 GO:GO:0016020 GO:GO:0008158
GeneTree:ENSGT00680000099777 Ensembl:ENSCAFT00000048348 OMA:WMYLQEI
Uniprot:J9PBB6
Length = 339
Score = 98 (39.6 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV--VLH 155
M L I N +S + +V + GI + F+S+I SF + R R+ + E S+ +
Sbjct: 241 MALWGISYNAVSLINLVTAVGISVEFVSHITRSF--AVSTRPTRLERAKEATISMGSAVF 298
Query: 156 AGLIL--LVAISILAFSEFQFILRIFFYML-FGIVLVGLLY 193
AG+ + L I +L ++ Q I +IFF+ L I ++GLL+
Sbjct: 299 AGVAMTNLPGILVLGLAKAQLI-QIFFFRLNLLITVLGLLH 338
Score = 46 (21.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 14 LPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASES 55
+P + W++ F DWL S + YA G ++++ P+ S
Sbjct: 33 IPASSWVDDFIDWLT--PSSCCRLYAFGA-NKDKFCPSTVNS 71
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.331 0.147 0.450 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 197 197 0.00082 111 3 11 21 0.50 31
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 606 (64 KB)
Total size of DFA: 167 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.18u 0.21s 19.39t Elapsed: 00:00:01
Total cpu time: 19.19u 0.21s 19.40t Elapsed: 00:00:01
Start: Thu Aug 15 17:01:56 2013 End: Thu Aug 15 17:01:57 2013