RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8507
(197 letters)
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 133 bits (336), Expect = 3e-36
Identities = 51/99 (51%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 2 RVPNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYAAGCITQERWFPNASESSILAYK 61
V ++K D+G LP WL FRDWL GLQ++FD+D+ G IT+E + N S+ ++LAYK
Sbjct: 768 SVKYVLKEDNGQLP-RMWLHYFRDWLQGLQKAFDEDWRDGRITKENYR-NGSDDAVLAYK 825
Query: 62 LLVQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYL 100
LLVQTG D PVDK + RLV+ DGIINP +YL
Sbjct: 826 LLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFY-IYL 863
Score = 90.7 bits (225), Expect = 2e-21
Identities = 44/105 (41%), Positives = 69/105 (65%)
Query: 93 KLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
+L +M L+ IKL+ I V+++ S GI + F +I L FLT IG+R+RR L++EHM++
Sbjct: 1005 ELFGMMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAIGDRNRRAVLALEHMFAP 1064
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
VL L L+ + +LA SEF FI+R FF +L + +G+L ++L
Sbjct: 1065 VLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVL 1109
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family. The model
describes Niemann-Pick C type protein in eukaryotes. The
defective protein has been associated with Niemann-Pick
disease which is described in humans as autosomal
recessive lipidosis. It is characterized by the lysosomal
accumulation of unestrified cholesterol. It is an
integral membrane protein, which indicates that this
protein is most likely involved in cholesterol transport
or acts as some component of cholesterol homeostasis
[Transport and binding proteins, Other].
Length = 1204
Score = 58.7 bits (142), Expect = 2e-10
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 88 GIINPKLLLVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSI 146
G+I L+ +M+L NI LN +S V +V + GI I F S+I F T +R+ R + ++
Sbjct: 1084 GMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEAL 1143
Query: 147 EHMYSVVLHAGLIL--LVAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
M S V +G+ L LV + +L FS+ + +F M IVL+G L+
Sbjct: 1144 GGMGSSVF-SGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALH 1191
>gnl|CDD|217050 pfam02460, Patched, Patched family. The transmembrane protein
Patched is a receptor for the morphogene Sonic Hedgehog.
This protein associates with the smoothened protein to
transduce hedgehog signals.
Length = 801
Score = 35.8 bits (83), Expect = 0.010
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIGNR-DRRVRLSIEHMYSVVLHA 156
+ L + L+PIS + I+ S G + F ++I F G+ D RV ++E + V A
Sbjct: 692 LSLWGVDLDPISMITIIMSIGFSVDFSAHIAYHFYRSRGSTPDERVADALEALGWPVFQA 751
Query: 157 GLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
L ++ + +L F +++ +FF + +V++GLL+
Sbjct: 752 ALSTILCVLVLLFVP-SYMVVVFFKTVVLVVVIGLLH 787
>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor. This is a family
of TCP plant transcription factors. TCP proteins were
named after the first characterized members (TB1, CYC
and PCFs) and they are involved in multiple
developmental control pathways. This region contains a
DNA binding basic-Helix-Loop-Helix (bHLP) structure.
Length = 122
Score = 31.9 bits (73), Expect = 0.073
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 136 GNRDRRVRLSIE 147
G RDRRVRLS E
Sbjct: 16 GGRDRRVRLSAE 27
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 31.5 bits (72), Expect = 0.25
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 96 LVMYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCI--GNRDRRVRLSIEHMYSVV 153
+M L+ I L P + L GI + + +I + G + ++E +
Sbjct: 611 GLMGLLGIPLTPATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAI 670
Query: 154 LHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
L + L + L FS F I + GI+L L +VLL
Sbjct: 671 LASALTTAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLVLL 714
Score = 26.9 bits (60), Expect = 9.8
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 97 VMYLMNIKLNPISC----VLIVNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMYSV 152
M L+ I L + +LI +HF + + V +I+H
Sbjct: 240 AMGLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRY-EEERRKGRTVEEAVVEAIKHTGPA 298
Query: 153 VLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
VL A L L S I + GI+L L + +L
Sbjct: 299 VLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVL 343
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 28.0 bits (63), Expect = 3.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 144 LSIEHMYSVV---LHAGLILLVAISILAFSEFQFILRIFFYMLFGIV--LVGLLYMV 195
+E +VV L A + LVAI++L LR +L + L+ L V
Sbjct: 702 SILESGDTVVGAFLQAFIYALVAITVLLL----LTLRRVRDVLLVLAPLLLAGLLTV 754
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 28.1 bits (63), Expect = 3.5
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 56 SILAYKLL--VQTGRVDNPVDKSLIKHNRLVSRDGIINPKLLLVMYLMNIKLNPISCVLI 113
+ AY L V +G VD+ +I LV I+N K+ L + + N IS + I
Sbjct: 934 PMFAYILGDFVSSGSVDDFSSVGVIVFTALVV---IVNLKIALEIN----RWNWISLITI 986
Query: 114 VNSSGIYIHFISYICLSFLTCIGNRDRRVRLSIEHMY-SVVLHAGLILLVAISILAFSEF 172
S +++ F+ F + + + + L+++V IS+L +
Sbjct: 987 WGSILVWLIFVIVYSSIFPS------PAFYKAAPRVMGTFGFWLVLLVIVLISLLPRFTY 1040
Query: 173 QFILRIFFYMLFGIV 187
+ I R+F + IV
Sbjct: 1041 KAIQRLFRPPDYDIV 1055
>gnl|CDD|219008 pfam06398, Pex24p, Integral peroxisomal membrane peroxin.
Peroxisomes play diverse roles in the cell,
compartmentalising many activities related to lipid
metabolism and functioning in the decomposition of toxic
hydrogen peroxide. Sequence similarity was identified
between two hypothetical proteins and the peroxin
integral membrane protein Pex24p.
Length = 360
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 159 ILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLY 193
LLV I + +LFGI++ G L+
Sbjct: 47 FLLVYTFICLVPYLLLVSLPLGPLLFGIMVPGYLW 81
>gnl|CDD|218739 pfam05767, Pox_A14, Poxvirus virion envelope protein A14. This
family consists of several Poxvirus virion envelope
protein A14 like sequences. A14 is a component of the
virion membrane and has been found to be an H1
phosphatase substrate in vivo and in vitro. A14 is
hyperphosphorylated on serine residues in the absence of
H1 expression.
Length = 92
Score = 26.6 bits (59), Expect = 4.1
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 150 YSVVLHAGLILLVAISILAFSEF 172
YS VL AG+ILL+ I AF EF
Sbjct: 11 YSGVLIAGIILLILACIFAFIEF 33
>gnl|CDD|219874 pfam08507, COPI_assoc, COPI associated protein. Proteins in this
family colocalise with COPI vesicle coat proteins.
Length = 136
Score = 26.9 bits (60), Expect = 4.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 156 AGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGL 191
L++L IS L F F I+ + ++FGI+++ L
Sbjct: 14 GALLILGGISQLFFLNFHSIILGVYGIIFGILIILL 49
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 27.8 bits (62), Expect = 4.9
Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 98 MYLMNIKLNPISCVLIVNSSGIYIHFISYICLSFLTCIG-NRDRRVRLSIEHMYSVVLHA 156
++ + ++ + + I+ +I F++ + + LS+ + ++
Sbjct: 83 RLILALLISILLILDILFYRF-FIDFLTIPNALLIEDFNLGKLGFSALSLLYPEDILFVV 141
Query: 157 GLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLLYMVLL 197
LILL+ + + + ++ + +VL LLY+ L
Sbjct: 142 DLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLLYLFLQ 182
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 27.6 bits (61), Expect = 5.5
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 4 PNIVKNDDGGLPGNFWLELFRDWLLGLQESFDKDYA 39
PN+ K D+ GLP N LELF+ LL E ++ YA
Sbjct: 1748 PNL-KMDECGLPKNMALELFKPHLLSKLE--ERGYA 1780
>gnl|CDD|225272 COG2409, COG2409, Predicted drug exporters of the RND superfamily
[General function prediction only].
Length = 937
Score = 27.0 bits (60), Expect = 7.2
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 139 DRRVRLSIEHMYSVVLHAGLILLVAISILAFSEFQFILRIFFYMLFGIVLVGLL 192
+ ++ V+ AGLI ++ L FS+ + + +I + G++L L+
Sbjct: 850 RTGIIRAMRGTGGVITAAGLIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLV 903
>gnl|CDD|233951 TIGR02614, ftsW, cell division protein FtsW. This family consists
of FtsW, an integral membrane protein with ten
transmembrane segments. In general, it is one of two
paralogs involved in peptidoglycan biosynthesis, the
other being RodA, and is essential for cell division.
All members of the seed alignment for this model are
encoded in operons for the biosynthesis of
UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein
(peptidoglycan). The FtsW designation is not used in
endospore-forming bacterial (e.g. Bacillus subtilis),
where the member of this family is designated SpoVE and
three or more RodA/FtsW/SpoVE family paralogs are
present. SpoVE acts in spore cortex formation and is
dispensible for growth. Biological rolls for FtsW in
cell division include recruitment of penicillin-binding
protein 3 to the division site [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 356
Score = 26.8 bits (60), Expect = 7.7
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 157 GLILLVAISI-----LAFSEFQFILRIFFYMLFGIVLVGLLYMV 195
GL+++ + S L F F+ R FY L G++L+ + +
Sbjct: 15 GLVMVYSASAAVALRLGGDPFYFLKRQLFYALLGLILMFVASRL 58
>gnl|CDD|227539 COG5214, POL12, DNA polymerase alpha-primase complex,
polymerase-associated subunit B [DNA replication,
recombination, and repair].
Length = 581
Score = 26.9 bits (59), Expect = 9.8
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 113 IVNSSGIYIHFISYICLSFLTCI-GNRDRRVRLSIEHMYSVVLHAGLILLV 162
IVN S + H ++ + + G RVRL++ H+ + G I+ V
Sbjct: 211 IVNPSTNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVAV 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.147 0.450
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,258,669
Number of extensions: 980505
Number of successful extensions: 1920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1884
Number of HSP's successfully gapped: 152
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)