RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8507
         (197 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.006
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 70/200 (35%)

Query: 36  KDYAAGCITQERWFPNASESSIL------AYKLLV----QTGRVDNPVD----------- 74
           K+Y    I  +R F   S S++         +L+     Q G  D+  +           
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHV 182

Query: 75  --KSLIK--HNRL--VSRDGIINPKL----LLVM-------------YLMNIKLNPISCV 111
               LIK     L  + R  +   K+    L ++             YL++I   PISC 
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---PISCP 239

Query: 112 LIVNSSGIYIHFISYICLSFLTC--IGNRDRRVRLSIEHMYSVVLH-AGLILLVAISILA 168
           LI    G+ I    Y+    +T   +G     +R    ++     H  GL+  VAI+   
Sbjct: 240 LI----GV-IQLAHYV----VTAKLLGFTPGELR---SYLKGATGHSQGLVTAVAIA-ET 286

Query: 169 FSEFQF------ILRIFFYM 182
            S   F       + + F++
Sbjct: 287 DSWESFFVSVRKAITVLFFI 306



 Score = 27.3 bits (60), Expect = 4.4
 Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 120 YIHFISYICLSFLTCIGNRDRRVRLSIEHMYSVVL-----HAGLILLVAISILAFSEFQF 174
           ++ ++S +     + +G  D+ + L +    +  L     HA    L+  +     + + 
Sbjct: 64  FLGYVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121

Query: 175 ILRIFF 180
           +++ + 
Sbjct: 122 LIKNYI 127


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.147    0.450 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,989,136
Number of extensions: 166006
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 4
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.4 bits)