BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8508
         (246 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T.
           Brucei Containing Glucose-6-Phosphate In The Active Site
 pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
 pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
 pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
           Trypanosoma Brucei Complexed With Citrate
          Length = 613

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 162 IINERFVNIPPQISVPLLQGL 182
           +I+E F N PP+ +VPLL  L
Sbjct: 355 VIDEHFANAPPEQNVPLLLAL 375


>pdb|3PJR|A Chain A, Helicase Substrate Complex
 pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
 pdb|1PJR|A Chain A, Structure Of Dna Helicase
          Length = 724

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 114 INITNKKHIECVQQLRSLLSELAEEHADDRIKAFVNKILTDDTQNVGLIINERFVNIPPQ 173
           I  TNK   E  ++++SLL   AE+       +   +IL  D   +G  IN  F  + P 
Sbjct: 62  ITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIG--INRNFSILDPT 119

Query: 174 ISVPLLQGLSKE 185
             + +++ + KE
Sbjct: 120 DQLSVMKTILKE 131


>pdb|2PJR|A Chain A, Helicase Product Complex
 pdb|2PJR|F Chain F, Helicase Product Complex
          Length = 548

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 114 INITNKKHIECVQQLRSLLSELAEEHADDRIKAFVNKILTDDTQNVGLIINERFVNIPPQ 173
           I  TNK   E  ++++SLL   AE+       +   +IL  D   +G  IN  F  + P 
Sbjct: 62  ITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIG--INRNFSILDPT 119

Query: 174 ISVPLLQGLSKE 185
             + +++ + KE
Sbjct: 120 DQLSVMKTILKE 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.132    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,844,489
Number of Sequences: 62578
Number of extensions: 197030
Number of successful extensions: 404
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 4
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)