Query psy8508
Match_columns 246
No_of_seqs 106 out of 245
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 20:44:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8508.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8508hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s3za_ d.108.1.1 (A:) Aminogl 68.7 13 0.00096 25.7 8.4 82 42-138 4-108 (147)
2 d1jvra_ a.61.1.2 (A:) HTLV-II 65.8 2 0.00014 32.4 3.0 39 46-85 39-81 (137)
3 d1yr0a1 d.108.1.1 (A:4-166) Ph 51.2 21 0.0015 25.2 6.8 84 43-138 4-111 (163)
4 d2ozga2 d.108.1.10 (A:8-290) P 49.0 23 0.0017 27.9 7.3 81 41-138 2-102 (283)
5 d2fe7a1 d.108.1.1 (A:3-158) Pr 41.5 52 0.0038 23.0 9.5 84 43-139 3-110 (156)
6 d1y02a1 a.140.2.1 (A:71-114) R 29.7 17 0.0013 22.0 2.5 25 58-82 14-44 (44)
7 d1vhsa_ d.108.1.1 (A:) Putativ 23.6 1.1E+02 0.0079 21.1 10.3 62 42-115 3-71 (165)
8 d1mk4a_ d.108.1.1 (A:) Hypothe 22.7 19 0.0014 25.6 2.1 23 43-65 4-26 (157)
9 d2rnrb1 b.55.1.9 (B:1-108) TFI 21.8 18 0.0013 26.0 1.6 27 38-64 74-102 (108)
10 d2ae6a1 d.108.1.1 (A:1-161) Pu 21.7 1.1E+02 0.008 20.8 6.4 23 41-63 5-27 (161)
No 1
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=68.70 E-value=13 Score=25.73 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=49.8
Q ss_pred eecCCCCCcHHHHHHHHHHhhccCC--CChhHHHHHHHcCCCcceEEEecCCCCCCCCCCCCCCCCCeEEEEEee-----
Q psy8508 42 EGRSAIDSDFHGVKQLLKQLFLKAH--INLSELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVI----- 114 (246)
Q Consensus 42 e~~dp~~~DfhgIk~LL~qlf~~~~--idls~LadlIi~Q~~vGtvIK~~~~d~~~dd~dd~~~~~dv~g~~SvL----- 114 (246)
+.+..++.|...+..|.+++++... .....+...+... ....++.. +++.+.|++++-
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~--------------~~~~~vG~~~~~~~~~~ 68 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAM--------------ADGVAIGFADASIRHDY 68 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEE--------------ETTEEEEEEEEEEECSC
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEE--------------ECCEEEEEEEEEeecCc
Confidence 4567789999999999999997643 2345566555543 33333332 123455555432
Q ss_pred ----------------ecCCCCCchHHHHHHHHHHHHHHh
Q psy8508 115 ----------------NITNKKHIECVQQLRSLLSELAEE 138 (246)
Q Consensus 115 ----------------nl~~~k~~~~i~~l~~yll~k~~~ 138 (246)
=...++....-+.|.+++.+.|++
T Consensus 69 ~~~~~~~~~~~i~~l~V~~~~rg~Gig~~Ll~~~~~~a~~ 108 (147)
T d1s3za_ 69 VNGCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRWGTN 108 (147)
T ss_dssp CTTCSSSSEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEEEEECHHHcCCcHHHHHHHHHHHHhhh
Confidence 122344556667888887777754
No 2
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=65.82 E-value=2 Score=32.39 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=27.4
Q ss_pred CCCCcHHHHHHHHHHhhcc----CCCChhHHHHHHHcCCCcceE
Q psy8508 46 AIDSDFHGVKQLLKQLFLK----AHINLSELTDVIISQSNIGSV 85 (246)
Q Consensus 46 p~~~DfhgIk~LL~qlf~~----~~idls~LadlIi~Q~~vGtv 85 (246)
|++.|||-+|++|+=.+.. ..||.|-||.+|=. +.-|.|
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liPk-gypGRv 81 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK-GYPGRV 81 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS-SCSTTH
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCCC-CCCccH
Confidence 6789999999999866543 57888877765432 334433
No 3
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=51.17 E-value=21 Score=25.16 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=49.2
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc-------CCCChhHHHHHHHcCCCcceEEEecCCCCCCCCCCCCCCCCCeEEEEEeee
Q psy8508 43 GRSAIDSDFHGVKQLLKQLFLK-------AHINLSELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVIN 115 (246)
Q Consensus 43 ~~dp~~~DfhgIk~LL~qlf~~-------~~idls~LadlIi~Q~~vGtvIK~~~~d~~~dd~dd~~~~~dv~g~~SvLn 115 (246)
.+.....|..+|..+++++... .+++..+....+.....-+..+-+++ .++.|.|++++..
T Consensus 4 IR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~------------~~~~ivG~~~~~~ 71 (163)
T d1yr0a1 4 LRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAI------------LDGKVAGYASYGD 71 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEE------------ETTEEEEEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEE------------ECCeEEEeeccee
Confidence 4556788999999998876432 34566666666554322222222221 2356888877655
Q ss_pred cC-----------------CCCCchHHHHHHHHHHHHHHh
Q psy8508 116 IT-----------------NKKHIECVQQLRSLLSELAEE 138 (246)
Q Consensus 116 l~-----------------~~k~~~~i~~l~~yll~k~~~ 138 (246)
.. .++....-..|.+++++.|++
T Consensus 72 ~~~~~~~~~~~~~~~~v~p~~rg~Glg~~ll~~~~~~a~~ 111 (163)
T d1yr0a1 72 WRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGG 111 (163)
T ss_dssp SSSSGGGTTEEEEEEEECTTSTTSSHHHHHHHHHHHHHHT
T ss_pred ecccccccceEEEEeeeeecccCCCCceeeeecccccccc
Confidence 43 233445557777777776644
No 4
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=48.96 E-value=23 Score=27.92 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=50.5
Q ss_pred EeecCCCCCcHHHHHHHHHHhhccCCCChhHHHHHHHcCCCcceEEEecCCCCCCCCCCCCCCCCCeEEEEEeee-----
Q psy8508 41 FEGRSAIDSDFHGVKQLLKQLFLKAHINLSELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVIN----- 115 (246)
Q Consensus 41 Fe~~dp~~~DfhgIk~LL~qlf~~~~idls~LadlIi~Q~~vGtvIK~~~~d~~~dd~dd~~~~~dv~g~~SvLn----- 115 (246)
|.+....+.|+..|..|+.+.|....-+....-+-+-.++ --|+.. ++-+.|.++++.
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~--~~v~~~---------------~~~ivg~~~~~~~~~~~ 64 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLEN--FRVIYR---------------EQKVAGGLAILPMGQWW 64 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGG--EEEEEE---------------TTEEEEEEEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCC--EEEEEE---------------CCEEEEEEEEEEeeeeE
Confidence 6777889999999999999999765333332333222222 123321 234444444443
Q ss_pred ---------------cCCCCCchHHHHHHHHHHHHHHh
Q psy8508 116 ---------------ITNKKHIECVQQLRSLLSELAEE 138 (246)
Q Consensus 116 ---------------l~~~k~~~~i~~l~~yll~k~~~ 138 (246)
...|+.......|.+.+++.++.
T Consensus 65 ~g~~~~~~~i~~v~v~p~~rg~G~~~~L~~~~~~~~~~ 102 (283)
T d2ozga2 65 GGQRVPMAGIAAVGIAPEYRGDGAAIALIQHTLQEISE 102 (283)
T ss_dssp TTEEEEEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH
T ss_pred CCeeeeEeeEEEEEECcccccCChHHHHHHHHHHHHHh
Confidence 34566777788999999888765
No 5
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.47 E-value=52 Score=23.01 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=51.9
Q ss_pred ecCCCCCcHHHHHHHHHHhhc--c----CCCChhHHHHHHHcCCCcceEEEecCCCCCCCCCCCCCCCCCeEEEEEeeec
Q psy8508 43 GRSAIDSDFHGVKQLLKQLFL--K----AHINLSELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVINI 116 (246)
Q Consensus 43 ~~dp~~~DfhgIk~LL~qlf~--~----~~idls~LadlIi~Q~~vGtvIK~~~~d~~~dd~dd~~~~~dv~g~~SvLnl 116 (246)
.+.....|...|-.|.+++.. . ..++...+...+..+++-..++-.. .++.|.|++++...
T Consensus 3 IR~a~~~D~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~-------------~~~~ivG~~~~~~~ 69 (156)
T d2fe7a1 3 IRPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCL-------------SEGRPIGYAVFFYS 69 (156)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHTTCGGGCCCCHHHHHHHHTSTTCSEEEEEEE-------------ETTEEEEEEEEEEE
T ss_pred EEECCHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhccCCCceEEEEe-------------eCCEEEEEEeEeec
Confidence 345677899999999887632 1 2345567777777776655544432 23467787654321
Q ss_pred ------------------CCCCCchHHHHHHHHHHHHHHhh
Q psy8508 117 ------------------TNKKHIECVQQLRSLLSELAEEH 139 (246)
Q Consensus 117 ------------------~~~k~~~~i~~l~~yll~k~~~~ 139 (246)
..++....-+.|..++.+.|++.
T Consensus 70 ~~~~~~~~~~~i~~~~V~p~~Rg~GiG~~L~~~~~~~a~~~ 110 (156)
T d2fe7a1 70 YSTWLGRNGIYLEDLYVTPEYRGVGAGRRLLRELAREAVAN 110 (156)
T ss_dssp EETTTTEEEEEEEEEEECGGGCC--HHHHHHHHHHHHHHHT
T ss_pred ccccccCCeEEeeeeeechhhhccChHHHHHHHHHHHHHHc
Confidence 33445666778888888877654
No 6
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.74 E-value=17 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=17.5
Q ss_pred HHHhhccCCCC------hhHHHHHHHcCCCc
Q psy8508 58 LKQLFLKAHIN------LSELTDVIISQSNI 82 (246)
Q Consensus 58 L~qlf~~~~id------ls~LadlIi~Q~~v 82 (246)
|+||+.--+|. -.+|+++++.|.+|
T Consensus 14 Lr~YL~l~~I~t~~CrEKedLV~LVl~h~p~ 44 (44)
T d1y02a1 14 LRDYLSLHDISTEMCREKEELVLLVLGQQPV 44 (44)
T ss_dssp HHHHHHHTTCCCTTCCSHHHHHHHHHHTCCC
T ss_pred HHHHHHHcCCChhhhhhHHHHHHHHHhcCCC
Confidence 56666544443 37999999998865
No 7
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=23.63 E-value=1.1e+02 Score=21.13 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=40.6
Q ss_pred eecCCCCCcHHHHHHHHHHhhcc-------CCCChhHHHHHHHcCCCcceEEEecCCCCCCCCCCCCCCCCCeEEEEEee
Q psy8508 42 EGRSAIDSDFHGVKQLLKQLFLK-------AHINLSELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVI 114 (246)
Q Consensus 42 e~~dp~~~DfhgIk~LL~qlf~~-------~~idls~LadlIi~Q~~vGtvIK~~~~d~~~dd~dd~~~~~dv~g~~SvL 114 (246)
.++...+.|...|..|..+.... .+.+..++...+.....-+.+.-.+. +++.|.|++++-
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~ivG~~~~~ 70 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAED------------ENGNVAAWISFE 70 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEEC------------TTSCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEEe------------cCCceEeeeeee
Confidence 45667789999999998886542 34566777877776655554444431 235677877664
Q ss_pred e
Q psy8508 115 N 115 (246)
Q Consensus 115 n 115 (246)
+
T Consensus 71 ~ 71 (165)
T d1vhsa_ 71 T 71 (165)
T ss_dssp E
T ss_pred e
Confidence 4
No 8
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]}
Probab=22.68 E-value=19 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=18.9
Q ss_pred ecCCCCCcHHHHHHHHHHhhccC
Q psy8508 43 GRSAIDSDFHGVKQLLKQLFLKA 65 (246)
Q Consensus 43 ~~dp~~~DfhgIk~LL~qlf~~~ 65 (246)
.+.....|++.|-.|+++++...
T Consensus 4 iR~~~~~D~~~i~~l~~~~~~~~ 26 (157)
T d1mk4a_ 4 IRTITSSDYEMVTSVLNEWWGGR 26 (157)
T ss_dssp EEECCGGGHHHHHHHTTTSSTTC
T ss_pred EEeCCHHHHHHHHHHHHHHhcCC
Confidence 35667889999999999998763
No 9
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.77 E-value=18 Score=25.97 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.4
Q ss_pred EEEEeecCCC--CCcHHHHHHHHHHhhcc
Q psy8508 38 QVTFEGRSAI--DSDFHGVKQLLKQLFLK 64 (246)
Q Consensus 38 ~vDFe~~dp~--~~DfhgIk~LL~qlf~~ 64 (246)
.--|.|-+|. ..|.+.||.+|+|++..
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~~ 102 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLPK 102 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHHH
Confidence 4678888876 36889999999999875
No 10
>d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244 {Enterococcus faecalis [TaxId: 1351]}
Probab=21.65 E-value=1.1e+02 Score=20.82 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=17.5
Q ss_pred EeecCCCCCcHHHHHHHHHHhhc
Q psy8508 41 FEGRSAIDSDFHGVKQLLKQLFL 63 (246)
Q Consensus 41 Fe~~dp~~~DfhgIk~LL~qlf~ 63 (246)
+..+...+.|+..|..|.+..+.
T Consensus 5 i~iR~~~~~D~~~i~~l~~~~~~ 27 (161)
T d2ae6a1 5 LTIRLVAEADWPALHALDQIIWT 27 (161)
T ss_dssp EEEEECCGGGHHHHHHHHTTC--
T ss_pred eEEEeCCHHHHHHHHHHHHHHhh
Confidence 56677889999999998887664
Done!