RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8508
(246 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 9e-05
Identities = 35/247 (14%), Positives = 72/247 (29%), Gaps = 70/247 (28%)
Query: 23 DSDAEEEGYTGGEEIQVTFEGRSAIDSDFHGVKQLLKQLFLKA---HI--------NLSE 71
D + E Y + + V FE + D V+ + K + K HI
Sbjct: 8 DFETGEHQYQYKDILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 72 LTDVIISQSNIGSVVKQSTADEDMDD-----------DDDESDVNDVFGITTVINITN-- 118
L ++S+ +V++ + + S + ++ I + N
Sbjct: 67 LFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDN 123
Query: 119 ----KKHI---ECVQQLRSLLSELAEE-----H---------------ADDRIK-AFVNK 150
K ++ + +LR L EL +++ K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 151 I--LT----DDTQNVGLIINERFVNIPPQISVPL--LQGLSKEIQQAKDKKMPYDFQHYI 202
I L + + V ++ + I P + + I + + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL------RRL 237
Query: 203 LISKLYK 209
L SK Y+
Sbjct: 238 LKSKPYE 244
Score = 42.1 bits (98), Expect = 1e-04
Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 59/235 (25%)
Query: 42 EGRSAIDSDFHGVKQLLKQLFL-KAHIN-LSELTDV----IISQSNIGSVVKQSTADEDM 95
+ S I H ++ L++L K + N L L +V + N+ + +T + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 96 DDDDDESDVNDVFGITTVINITNK-------KHIEC-VQQLR-----------SLLSELA 136
D + + + +T K+++C Q L S+++E
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 137 EEHAD----------DR----IKAFVNKILTDDTQN--VGLIINERF---VNIPPQISVP 177
+ D+ I++ +N + + + L + F +IP +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSL 394
Query: 178 LLQGLSKEIQQ------------AKDKKMPYDFQHYILISKLYKSDGSKKKKNKV 220
+ + K K K I + K + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Score = 33.7 bits (76), Expect = 0.066
Identities = 38/240 (15%), Positives = 65/240 (27%), Gaps = 75/240 (31%)
Query: 22 YDSDAEEEGYTGGEEIQVTFEGRSAIDSDF-------HGVKQLLKQLFLKAHI-NLSELT 73
+D + + S ++ + L LK + N L
Sbjct: 397 FDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALH 446
Query: 74 DVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVI--NITNKKHIECVQQLRSL 131
I+ NI + D DD D + + I ++ N +H E + R +
Sbjct: 447 RSIVDHYNI---------PKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMV 496
Query: 132 LSELAEEHADDRIKAFV-NKILTDDTQNVGLIINERFVNIPPQISVPLLQGL---SKEI- 186
D R F+ KI D T + LQ L I
Sbjct: 497 F-------LDFR---FLEQKIRHDSTAWNA-----------SGSILNTLQQLKFYKPYIC 535
Query: 187 -QQAKDKKMPYDFQHYILI--SKLYKSDGSKKKKNKVTGQTDPDIL---FSNAEEEVFDE 240
K +++ ++ L S D+L +E +F+E
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSK-------------YTDLLRIALMAEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.004
Identities = 37/259 (14%), Positives = 71/259 (27%), Gaps = 98/259 (37%)
Query: 8 AARLPAENESSGSEYDSDAEEE------GYTGGEEIQVTFEGRSAIDSDFHGVKQLLKQL 61
LP E ++ + E GY ++ S Q+L
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVS-SLVE---------PSKVGQFDQVLNLC 87
Query: 62 FLKAHINLSELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVINITNKKH 121
L+E + + ++I ++ + + D + + + + K
Sbjct: 88 -------LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 122 I--------------------------ECVQQLRSL------------------LSELAE 137
+ ++LR L LSEL
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 138 EHADDR--------IKAFVNKILTDDTQNVGLIINERFVNIPPQISVPLLQGLSKEIQQA 189
D I ++ +T + + ++IP IS PL+ G+ IQ
Sbjct: 201 TTLDAEKVFTQGLNILEWLEN--PSNTPDK-----DYLLSIP--ISCPLI-GV---IQ-- 245
Query: 190 KDKKMPYDFQHYILISKLY 208
HY++ +KL
Sbjct: 246 --------LAHYVVTAKLL 256
>3t43_A HIV epitope-scaffold 4E10_1XIZA_S0_006_C; putative
phosphotransferase system, transferase; 1.95A
{Artificial gene}
Length = 162
Score = 30.4 bits (69), Expect = 0.32
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 32/110 (29%)
Query: 93 EDMDDDDDESDVNDVFGITTVINITNKKHIECVQQLRSLLSELAEEHADDRIKAFVNKIL 152
ED + D V VF + + + ++ + F+ ++L
Sbjct: 73 EDAGGEPDPVPVRVVFML---ALGNWFDITNVLWWIMDVIQD----------ADFMQQLL 119
Query: 153 TDDTQNVGLIINERFVNIPPQISVPLLQGLSKEIQQAKDKKMPYDFQHYI 202
+ + Q + I +A + +HY+
Sbjct: 120 VMNDDEI-------------------YQSIYTRISEAAGMAGIHFRRHYV 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.35
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 126 QQLRSLLSELAEEHADDR-----IKAFV 148
Q L+ L + L + +ADD IKA +
Sbjct: 20 QALKKLQASL-KLYADDSAPALAIKATM 46
>3lf6_A Putative phosphotransferase system; epitope-scaffold, immune
system; 1.90A {Artificial gene} PDB: 1xiz_A
Length = 161
Score = 29.6 bits (67), Expect = 0.51
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 93 EDMDDDDDESDVNDVFGITTVINITNKKHIECVQQLRSLLSELAEEHADDRIKAFVNKIL 152
ED + D V VF + + + ++ + + F+ ++L
Sbjct: 98 EDAGGEPDPVPVRVVFML---ALGNWFDITNVLWWIMDVIQD----------EDFMQQLL 144
Query: 153 TDDTQNVGLIINERF 167
+ + I R
Sbjct: 145 VMNDDEIYQSIYTRI 159
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 28.8 bits (65), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 57 LLKQLFLKAHINLSELTDVIISQSNIGSVV 86
L+KQL ++ ++ +I+S SVV
Sbjct: 42 LVKQLLEHEGLSFEDVKGIIVS-----SVV 66
>3djc_A Type III pantothenate kinase; structural genomics, putative
transfera 2, protein structure initiative; 2.40A
{Legionella pneumophila subsp}
Length = 266
Score = 28.4 bits (64), Expect = 2.1
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 57 LLKQLFLKAHINLSELTDVIISQSNIGSVV 86
LK + + + + + + I SVV
Sbjct: 43 FLKSVLRENNCSPETIRKIAIC-----SVV 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 75 VIISQSNIGSVVKQSTADEDMDDDDDESDVNDV 107
VII SN+GS + + + +V V
Sbjct: 703 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKV 735
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 27.9 bits (63), Expect = 2.8
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 75 VIISQSNIGSVVKQSTADEDMDDDDDESDVNDV 107
VII SN+GS + + + +V V
Sbjct: 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKV 194
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural
genomics, secsg, PSI, P structure initiative; 2.90A
{Pyrococcus furiosus}
Length = 103
Score = 26.5 bits (58), Expect = 3.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 121 HIECVQQLRSLLSELAEEHADDRIKAFV 148
H++ V++++ L EL EE+ I+ F+
Sbjct: 6 HMDLVEKVKELCLELEEENLAKAIERFI 33
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 27.3 bits (61), Expect = 4.2
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 27/135 (20%)
Query: 129 RSLLSELAEEHADDRIKAFVNKILTDDTQNVGLIINERFVNIPPQIS-----------VP 177
LL + E ++ A K L + + + + PQ+
Sbjct: 19 EHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGP--LAELLPQLDGSIDTAFCCLGTT 76
Query: 178 LLQGLSKEIQQAKDKKMPYDF---------QHYILISKLYKSDGSKKKKNKVTGQTDPDI 228
+ + S+E +A D +P +HY+++S L S N+V G+ + +
Sbjct: 77 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQAL 136
Query: 229 LFSNAEEEVFDEVSI 243
+ +++I
Sbjct: 137 QEQG-----WPQLTI 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.349
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,675,475
Number of extensions: 219241
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 23
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.2 bits)