RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8508
         (246 letters)



>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 26.7 bits (58), Expect = 2.9
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 76  IISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVINITNKKHIECVQQLRSLLSEL 135
           + SQ+NI  V+ +    E   + D +     V  I        +    CV  L  L+   
Sbjct: 342 LASQANIAQVLAELK--EYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK 399

Query: 136 AEEHADDRIKAFVNKILTDDTQNVGLIINERFVNI 170
                 + I    + I          II     N+
Sbjct: 400 VNYVVQEAIVVIRD-IFRKYPNKYESIIATLCENL 433


>d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 376

 Score = 25.3 bits (54), Expect = 7.4
 Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 3/166 (1%)

Query: 12  PAENESSGSEYDSDAEEEGYTGGEEIQVTFEGRSAIDSDFHGVKQLLKQLFLKAH-INLS 70
           P     + +  D        T   E ++T+           G+    K   +    +N  
Sbjct: 181 PLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGV 240

Query: 71  ELTDVIISQSNIGSVVKQSTADEDMDDDDDESDVNDVFGITTVINITNKKHIECVQQLRS 130
            +     + +N+ + +         D  + +  V      T    +        +    +
Sbjct: 241 AVEGKSPAAANVSAAISVVPLPAAADRGNPDVWVPVFGATTGGGVVAYPDSGYPILGFTN 300

Query: 131 LL--SELAEEHADDRIKAFVNKILTDDTQNVGLIINERFVNIPPQI 174
           L+     A      +++ F  K       N   I    FV +P   
Sbjct: 301 LIFSQCYANATQTGQVRDFFTKHYGTSANNDAAIEANAFVPLPSNW 346


>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 209

 Score = 24.9 bits (54), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 222 GQTDPDILFSNAEEEVF 238
           G+  PD+LF  A  EVF
Sbjct: 54  GEQPPDVLFKGAGFEVF 70


>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 408

 Score = 25.3 bits (54), Expect = 7.9
 Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 103 DVN--DVFGITTVINITNKKHIECVQQLRSLLSELAEEHADDR 143
             N     G T +       +I     L+ +  E +     D+
Sbjct: 355 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 397


>d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste
           zostericola) [TaxId: 6437]}
          Length = 118

 Score = 24.5 bits (53), Expect = 8.8
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 119 KKHIECVQQLRSLLSELAEEHADDRIKAFVNKILTDDTQ 157
           K H + ++++  L + +  ++ D   +  VN I   D +
Sbjct: 75  KMHKDFLEKIGGLSAPVDAKNVDYCKEWLVNHIKGTDFK 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,857
Number of extensions: 39790
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 13
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.4 bits)