BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8513
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 26 KCWNCLKSLS-GKS--LFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQS 82
+CWNC G+ FC C ++Q PDP +Y+++ D + ++ A L +++ LQ
Sbjct: 12 RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLXDCNRSFRVDTAKLQHRYQQLQR 71
Query: 83 QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEE 134
+HPD FS ++Q E+ SE +S+ +N AY L PL RGLYLL L I I E
Sbjct: 72 LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPE 123
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
NY+ +F + +Q+ ++ + LS +F+ LQ + HPD F+ ++ ++ + ++ +N AY L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 115 QNPLKRGLYLLSLQNI 130
++PL+R YLLSLQ I
Sbjct: 65 KDPLRRAEYLLSLQGI 80
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+Y+ +F + +Y ++ LS +F+ LQ Q HPDKF++ +Q EQ + S+ +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 115 QNPLKRGLYLLSLQNISI 132
++PL R YLLSL +
Sbjct: 62 RHPLMRAEYLLSLHGFDL 79
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 66 YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
+ I+ + L K+++ LQ+Q HPD +++ SS LN+AY L++PL+R Y+L
Sbjct: 28 WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--------SSTLNQAYHTLKDPLRRSQYML 79
Query: 126 S-LQNISIEED 135
L+NI + ++
Sbjct: 80 KLLRNIDLTQE 90
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 66 YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
+ I+ + L K+++ LQ+Q HPD +++ SS LN+AY L++PL+R Y+L
Sbjct: 20 WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--------SSTLNQAYHTLKDPLRRSQYML 71
Query: 126 S-LQNISIEED 135
L+NI + ++
Sbjct: 72 KLLRNIDLTQE 82
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
NYY V + +Q + D+ K ++ L + HPDK N + +E+A E +++AY +L
Sbjct: 10 NYYEV--LGVQASASPEDIKKAYRKLALRWHPDK--NPDNKEEA--EKKFKLVSEAYEVL 63
Query: 115 QNPLKRGLY 123
+ KR LY
Sbjct: 64 SDSKKRSLY 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKR 120
AD+ K +K L + HPDK + E++ I ++KAY IL N KR
Sbjct: 32 ADIKKAYKKLAREWHPDKNKDPGAEDRFIQ------ISKAYEILSNEEKR 75
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 113
+YY + + ++ DL K ++ L + HPDK +E + + + AY++
Sbjct: 7 GDYYEILGVSRG--ASDEDLKKAYRRLALKFHPDK-----NHAPGATEAFKA-IGTAYAV 58
Query: 114 LQNPLKRGLY 123
L NP KR Y
Sbjct: 59 LSNPEKRKQY 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY V D+ Q ++ + K ++ L + HPDK N E + +E + +AY +L
Sbjct: 10 DYYEVLDVPRQ--ASSEAIKKAYRKLALKWHPDK----NPENKEEAERRFKQVAEAYEVL 63
Query: 115 QNPLKRGLY 123
+ KR +Y
Sbjct: 64 SDAKKRDIY 72
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
N +L K ++ + HPDK + ++ + ISE A+ IL +P KR +Y
Sbjct: 21 NEQELKKGYRKAALKYHPDKPTGDTEKFKEISE--------AFEILNDPQKREIY 67
>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 7 AILGSETALCTETAKSLE--LKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKM 64
A LG+ C+ K L+ L+ W K L+ + C S ++ +VFD K+
Sbjct: 42 AGLGARVYTCSRNEKELDECLEIWR-EKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKL 100
Query: 65 QYLINNADL 73
L+NNA +
Sbjct: 101 NILVNNAGV 109
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY + D+ + D+ K ++ Q HPDK N + + +E + +AY +L
Sbjct: 3 SYYEILDVPRSASAD--DIKKAYRRKALQWHPDK----NPDNKEFAEKKFKEVAEAYEVL 56
Query: 115 QNPLKRGLY 123
+ KR +Y
Sbjct: 57 SDKHKREIY 65
>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
Length = 479
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 97 QAISETYSSYLNKAYSILQNPLKRGLYL 124
+ +SE SSYL+K ++ LQ+P K +Y+
Sbjct: 355 EVVSEQVSSYLSKKFAELQSPNKFKVYM 382
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 73 LSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN 116
L+K ++ L + HPD+ NK EE+ ++E + AY L++
Sbjct: 33 LAKAYRALARKHHPDRVKNK--EEKLLAEERFRVIATAYETLKD 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,334,830
Number of Sequences: 62578
Number of extensions: 154778
Number of successful extensions: 574
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 20
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)