Query psy8513
Match_columns 183
No_of_seqs 202 out of 1687
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:52:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvo_A CO-chaperone protein HS 100.0 3.8E-47 1.3E-51 312.3 19.2 163 20-182 6-172 (207)
2 3hho_A CO-chaperone protein HS 100.0 2.4E-35 8.2E-40 236.1 13.2 130 53-182 3-137 (174)
3 1fpo_A HSC20, chaperone protei 100.0 3.3E-34 1.1E-38 229.0 14.2 129 54-182 1-133 (171)
4 3uo3_A J-type CO-chaperone JAC 100.0 4.6E-32 1.6E-36 218.4 10.4 124 50-182 7-142 (181)
5 2l6l_A DNAJ homolog subfamily 99.9 3.7E-24 1.3E-28 167.4 1.0 100 52-154 8-108 (155)
6 1wjz_A 1700030A21RIK protein; 99.8 2E-19 6.9E-24 129.3 9.2 78 52-131 14-92 (94)
7 2ej7_A HCG3 gene; HCG3 protein 99.7 4.1E-18 1.4E-22 119.6 8.5 70 52-127 7-76 (82)
8 2yua_A Williams-beuren syndrom 99.7 4.2E-18 1.4E-22 124.0 8.5 72 52-130 15-86 (99)
9 2dn9_A DNAJ homolog subfamily 99.7 4.1E-18 1.4E-22 118.8 7.5 70 51-127 4-73 (79)
10 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 4.4E-18 1.5E-22 125.7 7.9 74 52-128 13-86 (109)
11 2ctp_A DNAJ homolog subfamily 99.7 7.7E-18 2.6E-22 117.3 7.8 68 52-127 5-72 (78)
12 2cug_A Mkiaa0962 protein; DNAJ 99.7 1.2E-17 4.3E-22 119.0 8.3 69 52-128 15-83 (88)
13 1hdj_A Human HSP40, HDJ-1; mol 99.7 1E-17 3.6E-22 116.3 7.4 65 54-126 3-67 (77)
14 2dmx_A DNAJ homolog subfamily 99.7 1.5E-17 5E-22 119.4 7.9 70 52-127 7-76 (92)
15 2och_A Hypothetical protein DN 99.7 1.3E-17 4.5E-22 114.8 7.2 64 52-125 6-69 (73)
16 2ctr_A DNAJ homolog subfamily 99.7 1.9E-17 6.6E-22 118.0 8.1 68 52-127 5-72 (88)
17 2lgw_A DNAJ homolog subfamily 99.7 1.7E-17 5.7E-22 121.2 7.2 68 54-127 2-69 (99)
18 2ctw_A DNAJ homolog subfamily 99.7 3.8E-17 1.3E-21 121.0 8.4 69 51-126 14-82 (109)
19 2ctq_A DNAJ homolog subfamily 99.7 3.6E-17 1.2E-21 121.6 7.9 70 52-128 18-87 (112)
20 2o37_A Protein SIS1; HSP40, J- 99.7 6E-17 2.1E-21 116.4 7.2 66 52-127 6-71 (92)
21 1bq0_A DNAJ, HSP40; chaperone, 99.6 4.4E-17 1.5E-21 119.3 3.5 67 54-127 3-69 (103)
22 2ys8_A RAB-related GTP-binding 99.6 2.4E-16 8.2E-21 113.0 5.0 63 52-122 25-87 (90)
23 1faf_A Large T antigen; J doma 99.6 1.4E-16 4.9E-21 111.8 2.3 62 53-123 10-71 (79)
24 1gh6_A Large T antigen; tumor 99.6 8E-17 2.7E-21 120.6 0.9 63 54-125 8-70 (114)
25 3apq_A DNAJ homolog subfamily 99.6 9.2E-16 3.1E-20 122.9 6.2 66 54-126 2-67 (210)
26 2pf4_E Small T antigen; PP2A, 99.6 3.4E-16 1.2E-20 125.1 1.6 64 53-125 10-73 (174)
27 1iur_A KIAA0730 protein; DNAJ 99.5 3.1E-15 1.1E-19 107.1 4.0 64 51-120 13-76 (88)
28 1n4c_A Auxilin; four helix bun 99.5 1.2E-15 4.2E-20 122.6 1.9 66 54-123 117-182 (182)
29 3ag7_A Putative uncharacterize 99.5 1.4E-14 4.7E-19 107.1 4.2 63 53-118 40-104 (106)
30 2guz_A Mitochondrial import in 99.5 1.5E-14 5E-19 99.4 2.6 58 53-120 13-70 (71)
31 3lz8_A Putative chaperone DNAJ 99.5 5.3E-15 1.8E-19 128.5 0.0 66 53-126 27-92 (329)
32 2qwo_B Putative tyrosine-prote 99.4 1.5E-13 5.2E-18 99.2 2.5 59 54-116 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.3 2.3E-13 7.9E-18 127.7 0.1 68 51-125 18-85 (780)
34 2y4t_A DNAJ homolog subfamily 98.8 5.7E-09 1.9E-13 88.3 6.4 68 54-125 382-449 (450)
35 2guz_B Mitochondrial import in 98.5 1.2E-07 4.1E-12 64.0 4.3 53 56-117 6-59 (65)
36 1pft_A TFIIB, PFTFIIBN; N-term 81.6 0.67 2.3E-05 28.5 1.7 27 24-50 5-36 (50)
37 1twf_L ABC10-alpha, DNA-direct 81.5 0.6 2.1E-05 31.4 1.6 25 25-49 29-57 (70)
38 4esj_A Type-2 restriction enzy 81.2 0.61 2.1E-05 38.6 1.8 24 25-48 35-66 (257)
39 2lbz_A Thuricin17, thurincin H 80.5 0.46 1.6E-05 26.3 0.6 13 26-46 3-15 (31)
40 2kdx_A HYPA, hydrogenase/ureas 78.7 0.82 2.8E-05 33.2 1.7 25 24-48 73-100 (119)
41 2con_A RUH-035 protein, NIN on 76.0 1.1 3.7E-05 30.8 1.6 22 25-46 16-38 (79)
42 2lcq_A Putative toxin VAPC6; P 74.2 1.1 3.8E-05 34.1 1.3 23 25-47 133-157 (165)
43 3j20_Y 30S ribosomal protein S 73.5 1.1 3.8E-05 28.0 1.0 24 24-47 19-46 (50)
44 3a43_A HYPD, hydrogenase nicke 72.3 1 3.6E-05 33.8 0.8 26 24-49 70-118 (139)
45 1wg2_A Zinc finger (AN1-like) 72.1 2.6 8.8E-05 27.8 2.6 26 21-47 12-37 (64)
46 2jrp_A Putative cytoplasmic pr 70.6 1.6 5.4E-05 30.2 1.3 24 26-49 33-62 (81)
47 3v2d_5 50S ribosomal protein L 70.1 1.7 5.7E-05 28.3 1.3 23 23-46 29-51 (60)
48 2pzi_A Probable serine/threoni 69.8 2.2 7.5E-05 39.0 2.5 48 53-113 628-675 (681)
49 2zjr_Z 50S ribosomal protein L 67.4 2.1 7.2E-05 27.8 1.3 23 23-46 29-51 (60)
50 3j21_g 50S ribosomal protein L 67.2 2.6 8.8E-05 26.6 1.7 25 23-47 13-37 (51)
51 2k4x_A 30S ribosomal protein S 65.2 3.5 0.00012 26.1 2.0 25 24-48 18-46 (55)
52 3na7_A HP0958; flagellar bioge 63.8 2.3 7.9E-05 34.7 1.2 28 23-50 197-234 (256)
53 3irb_A Uncharacterized protein 61.2 1.9 6.5E-05 32.5 0.3 23 25-47 48-70 (145)
54 2jr6_A UPF0434 protein NMA0874 60.8 1.4 4.7E-05 29.4 -0.5 29 24-52 8-40 (68)
55 2hf1_A Tetraacyldisaccharide-1 60.6 1.3 4.6E-05 29.4 -0.6 28 25-52 9-40 (68)
56 2pk7_A Uncharacterized protein 60.5 1.5 5E-05 29.3 -0.4 29 24-52 8-40 (69)
57 2akl_A PHNA-like protein PA012 60.1 3.9 0.00013 30.8 1.8 27 23-49 26-55 (138)
58 1xs0_A Inhibitor of vertebrate 59.5 4.2 0.00014 30.7 1.9 37 57-93 94-130 (136)
59 3h0g_I DNA-directed RNA polyme 59.3 3.9 0.00013 29.5 1.6 28 25-52 5-40 (113)
60 2js4_A UPF0434 protein BB2007; 56.9 1.4 4.9E-05 29.4 -1.0 29 24-52 8-40 (70)
61 2gnr_A Conserved hypothetical 55.5 2.7 9.4E-05 31.7 0.3 23 25-47 48-70 (145)
62 2jny_A Uncharacterized BCR; st 54.3 2 6.8E-05 28.5 -0.6 29 24-52 10-42 (67)
63 3qt1_I DNA-directed RNA polyme 54.3 9.1 0.00031 28.5 3.0 31 23-53 23-61 (133)
64 1dl6_A Transcription factor II 53.9 4.7 0.00016 25.7 1.2 25 25-49 12-41 (58)
65 3h0g_L DNA-directed RNA polyme 53.4 8.4 0.00029 25.2 2.3 23 24-46 21-46 (63)
66 2d74_B Translation initiation 53.2 11 0.00038 28.6 3.4 32 25-56 105-143 (148)
67 1wfh_A Zinc finger (AN1-like) 52.2 9.5 0.00032 25.1 2.4 26 21-47 12-37 (64)
68 3k7a_M Transcription initiatio 50.0 10 0.00034 32.2 3.0 26 24-49 21-53 (345)
69 1vq8_Z 50S ribosomal protein L 49.1 2.7 9.3E-05 29.0 -0.6 31 21-51 24-58 (83)
70 3u50_C Telomerase-associated p 48.4 4.1 0.00014 31.8 0.2 24 24-47 42-68 (172)
71 1wfp_A Zinc finger (AN1-like) 48.2 11 0.00039 25.4 2.4 26 21-47 22-47 (74)
72 1ryq_A DNA-directed RNA polyme 45.6 5.7 0.00019 26.5 0.6 36 22-62 9-44 (69)
73 1wd2_A Ariadne-1 protein homol 43.9 14 0.00048 23.5 2.3 12 24-35 6-17 (60)
74 2jne_A Hypothetical protein YF 43.1 4.3 0.00015 29.0 -0.4 10 25-34 33-42 (101)
75 1ogy_B Diheme cytochrome C NAP 42.9 11 0.00038 28.1 1.8 14 37-50 94-107 (130)
76 3m7n_A Putative uncharacterize 41.7 11 0.00037 29.1 1.7 33 24-56 140-174 (179)
77 2gmg_A Hypothetical protein PF 41.1 17 0.00057 26.2 2.5 25 23-47 66-93 (105)
78 4ayb_P DNA-directed RNA polyme 40.3 21 0.00071 22.1 2.5 21 26-46 5-31 (48)
79 3cw2_K Translation initiation 39.4 16 0.00055 27.4 2.3 28 24-51 103-137 (139)
80 2l4z_A DNA endonuclease RBBP8, 38.8 28 0.00095 24.9 3.5 27 23-49 60-99 (123)
81 1wfl_A Zinc finger protein 216 37.8 15 0.0005 24.8 1.7 23 23-46 24-46 (74)
82 3twl_A Formamidopyrimidine-DNA 36.3 8.1 0.00028 32.7 0.2 23 25-47 248-278 (310)
83 2apo_B Ribosome biogenesis pro 34.9 23 0.0008 22.8 2.2 25 23-49 5-29 (60)
84 4bbr_M Transcription initiatio 34.4 12 0.00041 31.9 1.0 26 24-49 21-53 (345)
85 1nee_A EIF-2-beta, probable tr 33.6 20 0.0007 26.8 2.0 27 25-51 103-136 (138)
86 2zkr_2 60S ribosomal protein L 33.1 23 0.00077 25.1 2.1 23 24-46 16-39 (97)
87 1x4w_A Hypothetical protein FL 31.7 16 0.00053 24.2 1.0 25 23-48 14-41 (67)
88 1gnf_A Transcription factor GA 31.3 14 0.00049 22.5 0.7 24 23-46 3-33 (46)
89 1vk6_A NADH pyrophosphatase; 1 30.7 14 0.00047 30.3 0.7 29 23-51 106-138 (269)
90 2e62_A Protein AT5G25060; CWF2 30.1 1E+02 0.0035 19.8 4.7 15 143-157 21-35 (61)
91 1lv3_A Hypothetical protein YA 30.0 12 0.00041 24.9 0.2 24 24-47 9-38 (68)
92 2kpi_A Uncharacterized protein 29.7 10 0.00035 24.0 -0.2 28 24-51 10-41 (56)
93 1twf_I B12.6, DNA-directed RNA 29.6 13 0.00043 27.1 0.3 28 24-51 4-39 (122)
94 3k1f_M Transcription initiatio 29.5 20 0.0007 28.3 1.5 26 24-49 21-53 (197)
95 1x4l_A Skeletal muscle LIM-pro 29.4 47 0.0016 20.7 3.1 26 23-48 4-45 (72)
96 2cur_A Skeletal muscle LIM-pro 29.3 53 0.0018 20.3 3.3 27 23-49 4-42 (69)
97 3j21_e 50S ribosomal protein L 29.1 27 0.00092 22.7 1.8 24 23-46 16-40 (62)
98 2fiy_A Protein FDHE homolog; F 28.7 15 0.00051 31.1 0.6 23 25-47 209-231 (309)
99 1nui_A DNA primase/helicase; z 28.7 23 0.00078 28.2 1.7 24 24-47 14-42 (255)
100 3ghg_A Fibrinogen alpha chain; 28.6 2.5E+02 0.0086 25.6 8.5 87 71-181 67-154 (562)
101 3dfx_A Trans-acting T-cell-spe 28.5 13 0.00044 24.3 0.1 26 21-46 4-36 (63)
102 2d8x_A Protein pinch; LIM doma 26.3 60 0.002 20.1 3.1 27 23-49 4-42 (70)
103 4hc9_A Trans-acting T-cell-spe 26.2 2.2 7.6E-05 31.1 -4.4 27 55-81 88-114 (115)
104 1wff_A Riken cDNA 2810002D23 p 26.0 42 0.0014 23.1 2.4 25 23-48 24-49 (85)
105 1e8j_A Rubredoxin; iron-sulfur 25.6 47 0.0016 20.5 2.4 10 37-46 35-44 (52)
106 1wfk_A Zinc finger, FYVE domai 25.3 37 0.0013 23.1 2.1 12 37-48 32-43 (88)
107 2pzi_A Probable serine/threoni 24.9 30 0.001 31.4 1.9 23 24-46 34-64 (681)
108 2qkd_A Zinc finger protein ZPR 24.7 24 0.00081 31.1 1.1 23 24-46 220-257 (404)
109 1ef4_A Subunit N, DNA-directed 24.5 31 0.001 21.9 1.4 11 24-34 3-13 (55)
110 2lk0_A RNA-binding protein 5; 24.1 37 0.0013 18.8 1.5 24 26-49 7-30 (32)
111 1k81_A EIF-2-beta, probable tr 24.0 9.1 0.00031 22.0 -1.1 26 26-51 2-34 (36)
112 2aus_D NOP10, ribosome biogene 23.9 31 0.0011 22.2 1.4 22 24-47 5-26 (60)
113 3p8b_A DNA-directed RNA polyme 23.7 29 0.00098 23.8 1.2 32 25-61 24-55 (81)
114 4ayb_N DNA-directed RNA polyme 23.7 30 0.001 22.8 1.2 11 24-34 4-14 (66)
115 1l1o_C Replication protein A 7 23.6 19 0.00065 27.7 0.3 26 24-49 43-73 (181)
116 1p91_A Ribosomal RNA large sub 23.3 33 0.0011 26.7 1.7 36 25-62 3-40 (269)
117 2k1p_A Zinc finger RAN-binding 22.9 85 0.0029 17.3 3.0 25 25-49 7-31 (33)
118 3j20_W 30S ribosomal protein S 22.4 38 0.0013 22.1 1.5 26 24-49 15-45 (63)
119 6rxn_A Rubredoxin; electron tr 22.1 35 0.0012 20.7 1.3 21 26-46 6-38 (46)
120 2vut_I AREA, nitrogen regulato 22.1 16 0.00055 21.9 -0.3 21 25-45 2-29 (43)
121 3cng_A Nudix hydrolase; struct 22.0 23 0.00079 26.6 0.5 22 25-46 4-33 (189)
122 2dkt_A Ring finger and CHY zin 21.8 40 0.0014 25.4 1.8 22 25-48 72-93 (143)
123 2jw6_A Deformed epidermal auto 21.4 53 0.0018 19.5 2.0 22 23-47 8-29 (52)
124 3iz5_l 60S ribosomal protein L 21.4 24 0.00083 24.8 0.5 24 23-46 15-39 (94)
125 2xzm_6 RPS27E; ribosome, trans 21.3 53 0.0018 22.5 2.1 29 24-52 32-67 (81)
126 1x61_A Thyroid receptor intera 21.1 85 0.0029 19.4 3.1 34 23-59 4-51 (72)
127 1twf_J DNA-directed RNA polyme 21.0 38 0.0013 22.5 1.3 12 24-35 4-15 (70)
128 4a18_A RPL37, ribosomal protei 20.9 22 0.00075 25.0 0.1 23 24-46 16-39 (94)
129 1jm7_B BARD1, BRCA1-associated 20.9 60 0.0021 22.5 2.5 53 23-88 42-94 (117)
130 2od1_A Protein CBFA2T1; zinc f 20.9 61 0.0021 20.1 2.3 22 23-47 12-33 (60)
131 2kmz_A Tumor necrosis factor r 20.8 46 0.0016 20.7 1.6 25 26-50 21-46 (53)
132 3ph0_A ASCE; type III secretio 20.1 1.9E+02 0.0066 18.9 4.8 32 150-182 5-36 (67)
No 1
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-47 Score=312.27 Aligned_cols=163 Identities=37% Similarity=0.703 Sum_probs=150.1
Q ss_pred hccCCCCCCCCCCC---CCCCcccCCCCCCCcCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHH
Q psy8513 20 AKSLELKCWNCLKS---LSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEE 96 (183)
Q Consensus 20 ~~~~~~~Cw~C~~~---~~~~~~fC~~C~~~q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e 96 (183)
+++....||||+.+ +....+||++|+++||+....|||++|||+++|++|..+|+++||+|++++|||++++.++.+
T Consensus 6 ~~~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e 85 (207)
T 3bvo_A 6 AGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTE 85 (207)
T ss_dssp -----CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHH
T ss_pred cCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence 34467799999997 556999999999999999899999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcccc-CccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHH
Q psy8513 97 QAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEED-SKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIE 175 (183)
Q Consensus 97 ~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~~~-~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~ 175 (183)
++.+.++|+.||+||+||+||.+|+.|++.++|+++.++ ++.+|++|||++|||||+|+++.+.++|.+|..+++.+++
T Consensus 86 ~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~ 165 (207)
T 3bvo_A 86 KDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQK 165 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 7889999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8513 176 ELTKKVN 182 (183)
Q Consensus 176 ~~~~~l~ 182 (183)
++.++|.
T Consensus 166 ~~~~~l~ 172 (207)
T 3bvo_A 166 EFTDNVS 172 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 2
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=100.00 E-value=2.4e-35 Score=236.08 Aligned_cols=130 Identities=30% Similarity=0.573 Sum_probs=119.7
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCc
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISI 132 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~ 132 (183)
..|||++|||++++++|..+|+++||+|++++|||++++.++.++..+.+.|..||+||+||+||.+|+.|++.++|+++
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~ 82 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEM 82 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CccCCHHHHHHHHHHhHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHhc
Q psy8513 133 EED-SKGTDQKLLMEILMLNEELDEASS----EEDLENLQTSIRATIEELTKKVN 182 (183)
Q Consensus 133 ~~~-~~~~d~~fLme~me~~E~le~a~~----~~~l~~l~~~~~~~i~~~~~~l~ 182 (183)
..+ .+.+|++|||++|||||+|+++.+ .+.|.+|..+++++++++.++|.
T Consensus 83 ~~e~~~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~ 137 (174)
T 3hho_A 83 NAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQ 137 (174)
T ss_dssp C----CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 866 688999999999999999999864 45699999999999999998874
No 3
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=100.00 E-value=3.3e-34 Score=228.99 Aligned_cols=129 Identities=33% Similarity=0.561 Sum_probs=120.8
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCcc
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE 133 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~ 133 (183)
+|||++|||++++.+|..+|+++||+|++++|||++++.++.+++.+.++|+.||+||+||+||.+|+.|++.+.|+++.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~ 80 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA 80 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc-CccCCHHHHHHHHHHhHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513 134 ED-SKGTDQKLLMEILMLNEELDEAS---SEEDLENLQTSIRATIEELTKKVN 182 (183)
Q Consensus 134 ~~-~~~~d~~fLme~me~~E~le~a~---~~~~l~~l~~~~~~~i~~~~~~l~ 182 (183)
.+ .+.+|++|||++|||||+|+++. +.+.|..|..+++++++++.++|.
T Consensus 81 ~e~~~~~d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~ 133 (171)
T 1fpo_A 81 SEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMV 133 (171)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 67899999999999999999985 456799999999999999998764
No 4
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.97 E-value=4.6e-32 Score=218.43 Aligned_cols=124 Identities=28% Similarity=0.587 Sum_probs=111.9
Q ss_pred CCCCCChhhhcC------ccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513 50 PDPQNNYYNVFD------MKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123 (183)
Q Consensus 50 ~~~~~~~f~llg------l~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y 123 (183)
.....|||++|| +++ |++|..+|+++||+|++++|||++++ +.+.|+.||+||+||+||.+|+.|
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~-~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Y 77 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQY 77 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCC-SCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCC-CCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHH
Confidence 345579999995 554 88999999999999999999999976 357899999999999999999999
Q ss_pred HHHh-cCCCcccc-----CccCCHHHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513 124 LLSL-QNISIEED-----SKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVN 182 (183)
Q Consensus 124 ll~l-~g~~~~~~-----~~~~d~~fLme~me~~E~le~a~~~~~l~~l~~~~~~~i~~~~~~l~ 182 (183)
++.| +|+++.++ .+.+|++|||++|||||+|+++.+.++|++|..+++++++++.++|.
T Consensus 78 d~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~ 142 (181)
T 3uo3_A 78 MLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLG 142 (181)
T ss_dssp HHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99998764 35789999999999999999999999999999999999999988874
No 5
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=3.7e-24 Score=167.42 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=87.8
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKN-QEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI 130 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~-~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~ 130 (183)
...|||++|||+++++ .++|+++||+|++++|||+++..+ +.+++.+.+.|+.||+||++|+||.+|+.|++.+.|.
T Consensus 8 ~~~~~y~iLgv~~~a~--~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 8 PKKDWYSILGADPSAN--ISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCSHHHHHHTCCTTCC--HHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCChhHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 4579999999999977 599999999999999999998764 4788889999999999999999999999999998876
Q ss_pred CccccCccCCHHHHHHHHHHhHHH
Q psy8513 131 SIEEDSKGTDQKLLMEILMLNEEL 154 (183)
Q Consensus 131 ~~~~~~~~~d~~fLme~me~~E~l 154 (183)
.+.. .+..+++|+|++|+++|+.
T Consensus 86 ~~~~-~~~~~~~~~~~~m~~~e~~ 108 (155)
T 2l6l_A 86 DLRN-VGPVDAQVYLEEMSWNEGD 108 (155)
T ss_dssp HHHT-TCSSSEEEETTTSEEETTT
T ss_pred hccc-cccccceeeHHHhccccCC
Confidence 6554 3567889999999998754
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=2e-19 Score=129.26 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=69.5
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSN-KNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI 130 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~-~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~ 130 (183)
...|||+||||+++++ ..+|+++||+|++++|||++.. .++.++..+.+.|..|++||++|+||.+|+.|+..+.|.
T Consensus 14 ~~~~~y~iLgv~~~as--~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 14 LKKDWYSILGADPSAN--MSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SCSCHHHHTTCCTTCC--HHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CCCChHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 4579999999998865 5999999999999999999874 356677888999999999999999999999999998875
Q ss_pred C
Q psy8513 131 S 131 (183)
Q Consensus 131 ~ 131 (183)
.
T Consensus 92 ~ 92 (94)
T 1wjz_A 92 S 92 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=119.60 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=61.2
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
...|||++|||+++++ ..+|+++||+|++++|||++... .+.+.+.|..|++||++|+||.+|+.|+...
T Consensus 7 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQAS--SEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSCCHHHHTTCCTTCC--HHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCcCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 4579999999999865 59999999999999999998653 3456789999999999999999999998643
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=124.02 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI 130 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~ 130 (183)
...|||+||||+++++ ..+|+++||+|++++|||++..... +.+.|..|++||++|+||.+|+.|+..|.+.
T Consensus 15 ~~~~~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 15 SRTALYDLLGVPSTAT--QAQIKAAYYRQCFLYHPDRNSGSAE-----AAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp CSSHHHHHHTCCTTCC--HHHHHHHHHHHHHHSCTTTCSSCSH-----HHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred CccCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 4579999999998865 5999999999999999999976432 5678999999999999999999999876543
No 9
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=118.82 Aligned_cols=70 Identities=21% Similarity=0.396 Sum_probs=60.6
Q ss_pred CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
....|||++|||+++++ ..+|+++||+|++++|||++...+. +.+.|..|++||++|+||.+|+.|+...
T Consensus 4 ~~~~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNAS--QKEIKKAYYQLAKKYHPDTNKDDPK-----AKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCCSCHHHHHTCCTTCC--HHHHHHHHHHHHHHTCTTTCSSCTT-----HHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 34579999999999755 5999999999999999999976432 5678999999999999999999998643
No 10
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.74 E-value=4.4e-18 Score=125.74 Aligned_cols=74 Identities=24% Similarity=0.444 Sum_probs=65.9
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ 128 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~ 128 (183)
...|||++|||++++ ++.++|+++||+|++++|||++++ +.++..+.+.|..|++||++|+||.+|+.|+..+.
T Consensus 13 ~~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 357999999999985 356999999999999999999876 56677889999999999999999999999998664
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=117.26 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=59.9
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
...|||++|||+++++ ..+|+++||+|++++|||++... .+.+.|..|++||++|+||.+|+.|+...
T Consensus 5 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 5 SSGDYYEILGVSRGAS--DEDLKKAYRRLALKFHPDKNHAP------GATEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp CSCCHHHHHTCCTTCC--HHHHHHHHHHHHTTSCTTTCSSH------HHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 4579999999999865 59999999999999999998652 25688999999999999999999998654
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=118.99 Aligned_cols=69 Identities=30% Similarity=0.357 Sum_probs=60.5
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ 128 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~ 128 (183)
...|||++|||+++++ ..+|+++||+|++++|||++.... +.+.|..|++||++|+||.+|..|+....
T Consensus 15 ~~~d~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTAS--QADIKKAYKKLAREWHPDKNKDPG------AEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTCC--HHHHHHHHHHHHHHSCTTTCCSTT------HHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCChh------HHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 4579999999999865 599999999999999999987642 46789999999999999999999987543
No 13
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.72 E-value=1e-17 Score=116.32 Aligned_cols=65 Identities=20% Similarity=0.439 Sum_probs=58.2
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 126 (183)
.|||++|||+++++ .++|+++||+|++++|||++.... +.+.|..|++||++|+||.+|+.|+..
T Consensus 3 ~~~y~iLgv~~~as--~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 67 (77)
T 1hdj_A 3 KDYYQTLGLARGAS--DEEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDRY 67 (77)
T ss_dssp CCSHHHHTCCTTCC--HHHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 58999999999865 599999999999999999987642 467899999999999999999999864
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=119.37 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=61.6
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
...|||++|||+++++. .+|+++||+|++++|||++.... +.+.+.|..|++||++|+||.+|+.|+...
T Consensus 7 ~~~~~y~iLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 7 GMANYYEVLGVQASASP--EDIKKAYRKLALRWHPDKNPDNK----EEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCCHHHHHTCCTTCCT--THHHHHHHHHHHHTCTTTCSSCS----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CCcCHHHHcCCCCCCCH--HHHHHHHHHHHHHHCCCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 34699999999998765 99999999999999999987643 356789999999999999999999998764
No 15
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.71 E-value=1.3e-17 Score=114.78 Aligned_cols=64 Identities=25% Similarity=0.502 Sum_probs=57.1
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 125 (183)
...|||++|||+++++ ..+|+++||+|++++|||++++. .+.|..|++||++|+||.+|+.|+.
T Consensus 6 ~~~~~y~iLgl~~~a~--~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (73)
T 2och_A 6 KETGYYDVLGVKPDAS--DNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQ 69 (73)
T ss_dssp CCCCHHHHHTCCTTCC--HHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 3469999999999865 59999999999999999998653 3679999999999999999999975
No 16
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=118.00 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=59.9
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
...|||++|||+++++ .++|+++||+|++++|||++... .+.+.|..|++||++|+||.+|..|+...
T Consensus 5 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 5 SSGSYYDILGVPKSAS--ERQIKKAFHKLAMKYHPDKNKSP------DAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCCSHHHHHTCCTTCC--HHHHHHHHHHHHHHTCTTTCCSH------HHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCh------HHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 4579999999999865 59999999999999999998731 35689999999999999999999998754
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=121.20 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=60.6
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
.|||++|||+++++ .++|+++||+|++++|||++... ++.+.+.|+.||+||++|+||.+|+.|+...
T Consensus 2 ~d~Y~iLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 2 ASYYEILDVPRSAS--ADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCHHHHSSSCTTSC--HHHHHHHHHHHHHHTSTTTCCSC----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 58999999999876 49999999999999999998754 2356789999999999999999999999864
No 18
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.8e-17 Score=121.01 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=60.3
Q ss_pred CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513 51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126 (183)
Q Consensus 51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 126 (183)
....+||++|||+++++ .++|+++||+|++++|||++.... .+.+.|+.|++||++|+||.+|+.|+..
T Consensus 14 ~~~~~~Y~vLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 82 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNAT--SDDIKKSYRKLALKYHPDKNPDNP-----EAADKFKEINNAHAILTDATKRNIYDKY 82 (109)
T ss_dssp SCSCCHHHHHTCCTTCC--HHHHHHHHHHHHHHSCTTTSTTCH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 35579999999999865 599999999999999999987642 2568999999999999999999999853
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=121.62 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQ 128 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~ 128 (183)
...|||++|||+++++ ..+|+++||+|++++|||++.+... +.+.|..|++||++|+||.+|+.|+..+.
T Consensus 18 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSS--VEQILAEFKVRALECHPDKHPENPK-----AVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCHHHHTTCCTTSC--HHHHHHHHHHHHHTTCTTTCTTCST-----HHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 4579999999999865 4999999999999999999975432 56889999999999999999999997653
No 20
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6e-17 Score=116.41 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=58.2
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
...|||++|||+++++ .++|+++||+|++++|||++... .+.|+.|++||++|+||.+|+.|+...
T Consensus 6 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 6 KETKLYDLLGVSPSAN--EQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp SCCHHHHHHTCCTTCC--HHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred cCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 4579999999999855 59999999999999999998654 258999999999999999999998753
No 21
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.65 E-value=4.4e-17 Score=119.29 Aligned_cols=67 Identities=22% Similarity=0.433 Sum_probs=58.9
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHh
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSL 127 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l 127 (183)
.|||+||||+++++ .++|+++||+|++++|||++...+. +.+.++.|++||++|+||.+|+.|+...
T Consensus 3 ~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 69 (103)
T 1bq0_A 3 QDYYEILGVSKTAE--EREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQYG 69 (103)
T ss_dssp CCSTTTTSSCSSCC--HHHHHHHHHHHHTTTCTTTCTTTCT-----HHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred CCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 69999999999855 5999999999999999999976432 4578999999999999999999998643
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=112.98 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q psy8513 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGL 122 (183)
Q Consensus 52 ~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~ 122 (183)
...|||++|||+++++ .++|+++||+|++++|||++.... +.+.|..||+||++|+||.+|+.
T Consensus 25 ~~~~~y~iLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGAS--RDEVNKAYRKLAVLLHPDKCVAPG------SEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCC--HHHHHHHHHHHHHHHCTTTCCCTT------HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCcccccC
Confidence 3479999999999765 599999999999999999997643 35679999999999999999874
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.61 E-value=1.4e-16 Score=111.76 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y 123 (183)
..++|++|||++++..+..+|+++||+|++++|||+.+. .+.|+.||+||++|+||.+|+.+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 358999999999966778999999999999999999753 36899999999999999999874
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.60 E-value=8e-17 Score=120.63 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=58.0
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 125 (183)
.+||+||||+++++.+..+||++||+|++++|||+.+. .+.|+.||+||++|+||.+|+.|..
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 58999999999998888999999999999999999765 2689999999999999999999964
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.59 E-value=9.2e-16 Score=122.89 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=58.8
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 126 (183)
.|||++|||+++++ .++|+++||+|++++|||++++.+. +.+.|..|++||++|+||.+|+.|+..
T Consensus 2 ~~~y~~l~~~~~a~--~~~ik~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~~L~~~~~r~~yd~~ 67 (210)
T 3apq_A 2 QNFYSLLGVSKTAS--SREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDKY 67 (210)
T ss_dssp CCHHHHHTCCTTCC--HHHHHHHHHHHHHHHCGGGCTTCTT-----HHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 58999999999855 5999999999999999999976543 467899999999999999999999874
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.57 E-value=3.4e-16 Score=125.13 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=56.4
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 125 (183)
..+||++|||+++++.|.++|+++||++++++|||++++. +.|+.||+||++|+||.+|+.|+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~---------e~F~~I~~AYevLsdp~kR~~YD~ 73 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---------EKMKKMNTLYKKMEDGVKYAHQPD 73 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC---------TTTTHHHHHHHHHHHHHHHHTSCG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH---------HHHHHHHHHHHHhCCHHHHHHHhc
Confidence 4699999999999998889999999999999999997652 678999999999999999999975
No 27
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.54 E-value=3.1e-15 Score=107.14 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=55.6
Q ss_pred CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhH
Q psy8513 51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKR 120 (183)
Q Consensus 51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~R 120 (183)
....++|++|||+++++. ++|+++||+|++++|||++... .+.+.+.|+.|++||++|+|+..|
T Consensus 13 ~~~~~~y~vLgv~~~as~--~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPE--SERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSSCS--HHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHhhccc
Confidence 345699999999998776 9999999999999999997653 245678999999999999998777
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.53 E-value=1.2e-15 Score=122.62 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=58.7
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Y 123 (183)
.+||++|||++.++ ..+||++||++++++|||++.+.+.. +++.+.|..||+||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As--~~eIKkAYRklal~~HPDK~~~~~~e--~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVT--PEQVKKVYRKAVLVVHPDKATGQPYE--QYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSS--HHHHHHHHHHHHHHTCGGGGSSCTTH--HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCC--HHHHHHHHHHHHHHHCcCcCCCcchH--HHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999998855 59999999999999999999765433 37889999999999999999999876
No 29
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.49 E-value=1.4e-14 Score=107.09 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=55.4
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCch
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSN--KNQEEQAISETYSSYLNKAYSILQNPL 118 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~--~~~~e~~~a~~~s~~In~AY~tL~dp~ 118 (183)
..+||++||++. .+..+||++||++++++||||+.+ .++.++..|.+.|+.|++||++|+||.
T Consensus 40 ~~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999985 456999999999999999999864 356777788999999999999999985
No 30
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.5e-14 Score=99.36 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhH
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKR 120 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~R 120 (183)
..++|++|||++. +.+.++|+++||+|++++|||+.+. .+.|+.||+||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g~---------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGGS---------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTCC---------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHhhhhhc
Confidence 3589999999983 3456999999999999999999532 25889999999999998765
No 31
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.46 E-value=5.3e-15 Score=128.51 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~ 126 (183)
..|||++|||+++++. ++||++||+|+++||||++... .+.+.|+.||+||++|+||.+|+.|+..
T Consensus 27 ~~d~Y~vLgv~~~as~--~eIk~aYr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDL--KTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCH--HHHHHHHHHHHHHHCCCCCCCh------HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 3699999999998765 8999999999999999997643 3568899999999999999999999864
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.37 E-value=1.5e-13 Score=99.23 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=50.9
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN 116 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~d 116 (183)
.++|++||+++.++ ..+||++||++++++|||++.+.+. ...|.+.|..|++||++|++
T Consensus 33 ~~~y~~Lgv~~~as--~~eIKkAYRklal~~HPDK~~~~~~--~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVT--PEQVKKVYRKAVLVVHPCKATGQPY--EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSS--HHHHHHHHHHHHHHTCHHHHTTSTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCchh--HhHHHHHHHHHHHHHHHHHh
Confidence 58999999999866 5999999999999999999876432 24678899999999999975
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.30 E-value=2.3e-13 Score=127.70 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=37.7
Q ss_pred CCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513 51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125 (183)
Q Consensus 51 ~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 125 (183)
....|||++|||+++++ .++||++||+|++++|||++++.+ .+.+.|..|++||++|+||.+|+.|+.
T Consensus 18 ~~~~~~y~~lg~~~~a~--~~~i~~ay~~l~~~~hpd~~~~~~-----~~~~~f~~i~~ay~~L~~~~~r~~yd~ 85 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTAS--SREIRQAFKKLALKLHPDKNPNNP-----NAHGDFLKINRAYEVLKDEDLRKKYDK 85 (780)
T ss_dssp -----CHHHHTCCTTCC--HHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTT
T ss_pred CCCCCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 34579999999999865 599999999999999999986442 256789999999999999999999975
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.80 E-value=5.7e-09 Score=88.32 Aligned_cols=68 Identities=26% Similarity=0.429 Sum_probs=56.3
Q ss_pred CChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy8513 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125 (183)
Q Consensus 54 ~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll 125 (183)
.++|.++|++...+. .++++.|++++.++|||++.. +.+++.+.+.|..|++||++|+||.+|..|+-
T Consensus 382 ~~~y~~lg~~~~~~~--~~~~~~y~~~~l~~~pd~~~~--~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKK--QEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCT--THHHHHHHHHHHHSCGGGCCS--HHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCH--HHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 489999999988655 899999999999999999854 45577788999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.2e-07 Score=64.03 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=42.7
Q ss_pred hhhhcCccccC-CCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q psy8513 56 YYNVFDMKMQY-LINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNP 117 (183)
Q Consensus 56 ~f~llgl~~~~-~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp 117 (183)
-+.||||+++. ..+.++|+++||+|....|||+.++ .-..+.||.|++.|...
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---------~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS---------FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHHHH
Confidence 47899999871 2356999999999999999999644 25668899999998643
No 36
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.64 E-value=0.67 Score=28.50 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.9
Q ss_pred CCCCCCCCC-CCC----CCcccCCCCCCCcCC
Q psy8513 24 ELKCWNCLK-SLS----GKSLFCQHCSSVQKP 50 (183)
Q Consensus 24 ~~~Cw~C~~-~~~----~~~~fC~~C~~~q~~ 50 (183)
...|+.|+. .+. ...++|+.|+.+.+.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 458999998 542 267999999997764
No 37
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=81.50 E-value=0.6 Score=31.36 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCC---CcccCCCCCC-CcC
Q psy8513 25 LKCWNCLKSLSG---KSLFCQHCSS-VQK 49 (183)
Q Consensus 25 ~~Cw~C~~~~~~---~~~fC~~C~~-~q~ 49 (183)
-.|..||..+.. ....|+.|+. |.-
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 379999997432 7789999999 543
No 38
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=81.25 E-value=0.61 Score=38.63 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=18.2
Q ss_pred CCCCCCCC-CC-------CCCcccCCCCCCCc
Q psy8513 25 LKCWNCLK-SL-------SGKSLFCQHCSSVQ 48 (183)
Q Consensus 25 ~~Cw~C~~-~~-------~~~~~fC~~C~~~q 48 (183)
.-|++||. ++ +...|+|++|+---
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 46999999 45 33779999998643
No 39
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=80.52 E-value=0.46 Score=26.28 Aligned_cols=13 Identities=54% Similarity=1.676 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCcccCCCCCC
Q psy8513 26 KCWNCLKSLSGKSLFCQHCSS 46 (183)
Q Consensus 26 ~Cw~C~~~~~~~~~fC~~C~~ 46 (183)
.||+| ++|..|+.
T Consensus 3 tcwsc--------lvcaacsv 15 (31)
T 2lbz_A 3 TCWSC--------LVCAACSV 15 (31)
T ss_dssp CTTGG--------GGGGGCCS
T ss_pred cHHHH--------HHHHHhHH
Confidence 69998 88999986
No 40
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=78.67 E-value=0.82 Score=33.19 Aligned_cols=25 Identities=28% Similarity=0.711 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCC--Ccc-cCCCCCCCc
Q psy8513 24 ELKCWNCLKSLSG--KSL-FCQHCSSVQ 48 (183)
Q Consensus 24 ~~~Cw~C~~~~~~--~~~-fC~~C~~~q 48 (183)
...|++||..... ... .||.|++.+
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 4479999996443 556 799999864
No 41
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=76.05 E-value=1.1 Score=30.84 Aligned_cols=22 Identities=41% Similarity=1.146 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCC-CcccCCCCCC
Q psy8513 25 LKCWNCLKSLSG-KSLFCQHCSS 46 (183)
Q Consensus 25 ~~Cw~C~~~~~~-~~~fC~~C~~ 46 (183)
..|..|-..... ...|||+||.
T Consensus 16 LrC~aCf~~t~~~~k~FCp~CGn 38 (79)
T 2con_A 16 LRCHGCFKTTSDMNRVFCGHCGN 38 (79)
T ss_dssp EECSSSCCEESCSSCCSCSSSCC
T ss_pred eEecccceECCCcccccccccCc
Confidence 468888886554 8899999997
No 42
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=74.18 E-value=1.1 Score=34.07 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCC--CcccCCCCCCC
Q psy8513 25 LKCWNCLKSLSG--KSLFCQHCSSV 47 (183)
Q Consensus 25 ~~Cw~C~~~~~~--~~~fC~~C~~~ 47 (183)
..|..||..... ..-|||.||+-
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCB
T ss_pred EECCCCCCcccCCCCCCcCCCCCCc
Confidence 469999986543 34599999973
No 43
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.51 E-value=1.1 Score=27.99 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCC----CCcccCCCCCCC
Q psy8513 24 ELKCWNCLKSLS----GKSLFCQHCSSV 47 (183)
Q Consensus 24 ~~~Cw~C~~~~~----~~~~fC~~C~~~ 47 (183)
...|+.||..+- ...+.|+.|+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCE
Confidence 346999998532 267899999864
No 44
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=72.33 E-value=1 Score=33.77 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCC-------------C----------cccCCCCCCCcC
Q psy8513 24 ELKCWNCLKSLSG-------------K----------SLFCQHCSSVQK 49 (183)
Q Consensus 24 ~~~Cw~C~~~~~~-------------~----------~~fC~~C~~~q~ 49 (183)
...|++||..+.. . ...||.|++.+-
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 4479999996543 2 466999998653
No 45
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=72.14 E-value=2.6 Score=27.84 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=19.6
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 21 KSLELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 21 ~~~~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
+..+..|+.|++.+....|-| .|+.+
T Consensus 12 ~~~~~rC~~C~kkvgl~~f~C-rCg~~ 37 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVMGFKC-KCGST 37 (64)
T ss_dssp SCCSCSCTTTCCCCTTSCEEC-TTSCE
T ss_pred CCcCCcChhhCCcccccCeEe-ecCCE
Confidence 334668999999887667888 78764
No 46
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=70.60 E-value=1.6 Score=30.17 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=14.0
Q ss_pred CCCCCCCCCCC------CcccCCCCCCCcC
Q psy8513 26 KCWNCLKSLSG------KSLFCQHCSSVQK 49 (183)
Q Consensus 26 ~Cw~C~~~~~~------~~~fC~~C~~~q~ 49 (183)
.|+.|+.++.. ..+||..|+.+..
T Consensus 33 fCPeCgq~Le~lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTTTCCCC
T ss_pred cCcchhhHHHHHHhcCCcCeeeccCCCEee
Confidence 56666666532 4566666666544
No 47
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=70.11 E-value=1.7 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSS 46 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~ 46 (183)
+-..|++||.... +...|++||.
T Consensus 29 ~l~~c~~cGe~~~-~H~vc~~CG~ 51 (60)
T 3v2d_5 29 TLVPCPECKAMKP-PHTVCPECGY 51 (60)
T ss_dssp CCEECTTTCCEEC-TTSCCTTTCE
T ss_pred ceeECCCCCCeec-ceEEcCCCCc
Confidence 3457999998643 7889999984
No 48
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=69.84 E-value=2.2 Score=38.96 Aligned_cols=48 Identities=4% Similarity=0.054 Sum_probs=31.5
Q ss_pred CCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8513 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 113 (183)
Q Consensus 53 ~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~t 113 (183)
..+||.+||++-+-.--...|+++||+|++..+++ .+...+|..|+.+
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------------HHHHHHHHHhccc
Confidence 34588999996432111245889999999865554 2466777777765
No 49
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=67.43 E-value=2.1 Score=27.78 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSS 46 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~ 46 (183)
+-..|++||... .+...|++||.
T Consensus 29 ~l~~c~~cG~~~-~pH~vc~~CG~ 51 (60)
T 2zjr_Z 29 NLTECPQCHGKK-LSHHICPNCGY 51 (60)
T ss_dssp CCEECTTTCCEE-CTTBCCTTTCB
T ss_pred CceECCCCCCEe-CCceEcCCCCc
Confidence 445799999974 48899999995
No 50
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.25 E-value=2.6 Score=26.58 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
....|+.|++.++...-.|..||+.
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 4557999999888889999999986
No 51
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=65.16 E-value=3.5 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCC----CCcccCCCCCCCc
Q psy8513 24 ELKCWNCLKSLS----GKSLFCQHCSSVQ 48 (183)
Q Consensus 24 ~~~Cw~C~~~~~----~~~~fC~~C~~~q 48 (183)
...||+||..+- .+.+.|..|+.+.
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 457999998443 2678999998863
No 52
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.75 E-value=2.3 Score=34.68 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCC----------CcccCCCCCCCcCC
Q psy8513 23 LELKCWNCLKSLSG----------KSLFCQHCSSVQKP 50 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~----------~~~fC~~C~~~q~~ 50 (183)
....|-.|+..+++ .-.+||+||.|.-.
T Consensus 197 ~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred eCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 45589999998764 56899999998764
No 53
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=61.20 E-value=1.9 Score=32.47 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCcccCCCCCCC
Q psy8513 25 LKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 25 ~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
..|.+||...-++..+|+.|++-
T Consensus 48 ~rC~~CG~~~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp EECTTTCCEEESCCSEETTTTEE
T ss_pred EEeCCCCcEEcCchhhCcCCCCC
Confidence 37999999776678899999973
No 54
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=60.85 E-value=1.4 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCC----CcccCCCCCCCcCCCC
Q psy8513 24 ELKCWNCLKSLSG----KSLFCQHCSSVQKPDP 52 (183)
Q Consensus 24 ~~~Cw~C~~~~~~----~~~fC~~C~~~q~~~~ 52 (183)
-..|+.|+.++.. ..++|++|+..-|+..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 3589999998653 6799999998877643
No 55
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=60.61 E-value=1.3 Score=29.40 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCC----CcccCCCCCCCcCCCC
Q psy8513 25 LKCWNCLKSLSG----KSLFCQHCSSVQKPDP 52 (183)
Q Consensus 25 ~~Cw~C~~~~~~----~~~fC~~C~~~q~~~~ 52 (183)
..|+.|+.++.. ..++|++|+..-|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 479999998653 6799999998877643
No 56
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=60.55 E-value=1.5 Score=29.30 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCC----CcccCCCCCCCcCCCC
Q psy8513 24 ELKCWNCLKSLSG----KSLFCQHCSSVQKPDP 52 (183)
Q Consensus 24 ~~~Cw~C~~~~~~----~~~fC~~C~~~q~~~~ 52 (183)
-..|+.|+.++.. ..+.|++|+..-|+..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 3589999998652 6799999998877643
No 57
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=60.13 E-value=3.9 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCC---CcccCCCCCCCcC
Q psy8513 23 LELKCWNCLKSLSG---KSLFCQHCSSVQK 49 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~---~~~fC~~C~~~q~ 49 (183)
.-+.|++|+..... ..++||-|+.--.
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred cCCCCCCCCCcceEecCCeEECCccccccC
Confidence 35799999997543 7899999998554
No 58
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=59.50 E-value=4.2 Score=30.69 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=33.3
Q ss_pred hhhcCccccCCCCHHHHHHHHHHHHHhhCCCCCCCCC
Q psy8513 57 YNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKN 93 (183)
Q Consensus 57 f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk~~~~~ 93 (183)
|..||.|..-+||-+.|-.++..=+..-|||.|.-.+
T Consensus 94 ~~WLG~Pd~~sidg~t~l~a~lt~sl~nhP~~f~~~~ 130 (136)
T 1xs0_A 94 LTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFRS 130 (136)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHHTHHHHSTTSCCEEC
T ss_pred eEecCCCChhhcccHHHHHHHHhcchhcCcccccccc
Confidence 7789999888999999999999999999999997543
No 59
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.35 E-value=3.9 Score=29.47 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCC--------CcccCCCCCCCcCCCC
Q psy8513 25 LKCWNCLKSLSG--------KSLFCQHCSSVQKPDP 52 (183)
Q Consensus 25 ~~Cw~C~~~~~~--------~~~fC~~C~~~q~~~~ 52 (183)
.-|+.||..+.. ..++|.+|+...+...
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 479999997633 2699999999998754
No 60
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=56.93 E-value=1.4 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCC----CcccCCCCCCCcCCCC
Q psy8513 24 ELKCWNCLKSLSG----KSLFCQHCSSVQKPDP 52 (183)
Q Consensus 24 ~~~Cw~C~~~~~~----~~~fC~~C~~~q~~~~ 52 (183)
-..|+.|+.++.. ..+.|++|+..-|+..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 4589999998653 6799999998877643
No 61
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=55.47 E-value=2.7 Score=31.71 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCcccCCCCCCC
Q psy8513 25 LKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 25 ~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
..|.+||...-++..+|+.|++.
T Consensus 48 ~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp EECTTTCCEEESCCSEETTTTEE
T ss_pred EEECCCCcEEeCCCCCCCCCCCC
Confidence 37999999766677899999874
No 62
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=54.34 E-value=2 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCC----CcccCCCCCCCcCCCC
Q psy8513 24 ELKCWNCLKSLSG----KSLFCQHCSSVQKPDP 52 (183)
Q Consensus 24 ~~~Cw~C~~~~~~----~~~fC~~C~~~q~~~~ 52 (183)
-..|+.|+.++.. ..++|+.|+..-|+..
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 4589999998753 6789999998777643
No 63
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=54.30 E-value=9.1 Score=28.49 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCC--------CcccCCCCCCCcCCCCC
Q psy8513 23 LELKCWNCLKSLSG--------KSLFCQHCSSVQKPDPQ 53 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~--------~~~fC~~C~~~q~~~~~ 53 (183)
+-..|+.|+..+-+ ..+.|.+|+...+....
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~~ 61 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP 61 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSCS
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCCc
Confidence 44579999996643 15999999998876543
No 64
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=53.87 E-value=4.7 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=18.9
Q ss_pred CCCCCCCC-CC----CCCcccCCCCCCCcC
Q psy8513 25 LKCWNCLK-SL----SGKSLFCQHCSSVQK 49 (183)
Q Consensus 25 ~~Cw~C~~-~~----~~~~~fC~~C~~~q~ 49 (183)
..|+.|+. .+ .....+|..||.+..
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 37999987 32 127899999999764
No 65
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.44 E-value=8.4 Score=25.22 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCC---CcccCCCCCC
Q psy8513 24 ELKCWNCLKSLSG---KSLFCQHCSS 46 (183)
Q Consensus 24 ~~~Cw~C~~~~~~---~~~fC~~C~~ 46 (183)
.-.|-.|+..+.. ...-|+.|+.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 4579999997664 6799999997
No 66
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=53.18 E-value=11 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCCCCCCCCCC-------CCcccCCCCCCCcCCCCCCCh
Q psy8513 25 LKCWNCLKSLS-------GKSLFCQHCSSVQKPDPQNNY 56 (183)
Q Consensus 25 ~~Cw~C~~~~~-------~~~~fC~~C~~~q~~~~~~~~ 56 (183)
..|+.|+.|=. ...+.|.+||+..|++....+
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~~ 143 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLEH 143 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC----
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhhc
Confidence 58999999622 166889999999998765443
No 67
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.18 E-value=9.5 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=19.8
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 21 KSLELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 21 ~~~~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
...+..|+.|++.+....|-| .|+.+
T Consensus 12 k~~~~rC~~C~kkvgl~~f~C-rCg~~ 37 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMC-RCGTT 37 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEEC-SSSCE
T ss_pred CCcCCcChhhCCccCccCEEe-ecCCE
Confidence 345678999999887667888 68764
No 68
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=49.99 E-value=10 Score=32.19 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred CCCCCCCCCC---CC----CCcccCCCCCCCcC
Q psy8513 24 ELKCWNCLKS---LS----GKSLFCQHCSSVQK 49 (183)
Q Consensus 24 ~~~Cw~C~~~---~~----~~~~fC~~C~~~q~ 49 (183)
...|+.|+.. +- ....+|..||.|..
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4479999884 21 26889999999875
No 69
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=49.07 E-value=2.7 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=22.7
Q ss_pred ccCCCCCCCCCCCCC----CCcccCCCCCCCcCCC
Q psy8513 21 KSLELKCWNCLKSLS----GKSLFCQHCSSVQKPD 51 (183)
Q Consensus 21 ~~~~~~Cw~C~~~~~----~~~~fC~~C~~~q~~~ 51 (183)
.+....|++||+... .....|+.|+....-.
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 345668999999532 3678899999976543
No 70
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=48.36 E-value=4.1 Score=31.77 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCC---CCcccCCCCCCC
Q psy8513 24 ELKCWNCLKSLS---GKSLFCQHCSSV 47 (183)
Q Consensus 24 ~~~Cw~C~~~~~---~~~~fC~~C~~~ 47 (183)
.+.|++|++.+. ...++|+.|+..
T Consensus 42 Y~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp EEECTTSCCCEEEETTTEEEETTTTEE
T ss_pred ehhchhhCCEeeeCCCCeEECCCCCCC
Confidence 447999999874 377899999997
No 71
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.17 E-value=11 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.684 Sum_probs=20.1
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 21 KSLELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 21 ~~~~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
+..+..|+.|++.+....|-| .|+.+
T Consensus 22 k~~~~RC~~C~kkvgL~~f~C-rCg~~ 47 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKC-RCGST 47 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEEC-TTSCE
T ss_pred cccCccchhhcCcccccceEe-ccCCE
Confidence 445678999999887767888 68764
No 72
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=45.62 E-value=5.7 Score=26.55 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCCCCcCCCCCCChhhhcCc
Q psy8513 22 SLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDM 62 (183)
Q Consensus 22 ~~~~~Cw~C~~~~~~~~~fC~~C~~~q~~~~~~~~f~llgl 62 (183)
+....|-+|+..+ ..-.||+|+... -+.||.-++-+
T Consensus 9 ~~~~AC~~C~~~~--~~~~CPnC~s~~---tS~~w~G~ViI 44 (69)
T 1ryq_A 9 SSEKACRHCHYIT--SEDRCPVCGSRD---LSEEWFDLVII 44 (69)
T ss_dssp --CEEETTTCBEE--SSSSCTTTCCCC---EESCEEEEEEE
T ss_pred chhhhHHhCCccc--cCCcCCCccCCc---cCCccceEEEE
Confidence 3466899999966 778999999642 23455554443
No 73
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.94 E-value=14 Score=23.54 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCC
Q psy8513 24 ELKCWNCLKSLS 35 (183)
Q Consensus 24 ~~~Cw~C~~~~~ 35 (183)
...|++|+.++.
T Consensus 6 ~k~CP~C~~~Ie 17 (60)
T 1wd2_A 6 TKECPKCHVTIE 17 (60)
T ss_dssp CCCCTTTCCCCS
T ss_pred ceECcCCCCeeE
Confidence 456777777654
No 74
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.10 E-value=4.3 Score=29.04 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q psy8513 25 LKCWNCLKSL 34 (183)
Q Consensus 25 ~~Cw~C~~~~ 34 (183)
..|+.|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 3566665543
No 75
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=42.93 E-value=11 Score=28.13 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.7
Q ss_pred CcccCCCCCCCcCC
Q psy8513 37 KSLFCQHCSSVQKP 50 (183)
Q Consensus 37 ~~~fC~~C~~~q~~ 50 (183)
..+||..|++-|.-
T Consensus 94 ~RYfCtQCHVpQad 107 (130)
T 1ogy_B 94 RRYFCTACHVPQTN 107 (130)
T ss_dssp TTCCGGGTCCBCBC
T ss_pred cceecccccCcccc
Confidence 56799999998864
No 76
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=41.68 E-value=11 Score=29.06 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCC--CcccCCCCCCCcCCCCCCCh
Q psy8513 24 ELKCWNCLKSLSG--KSLFCQHCSSVQKPDPQNNY 56 (183)
Q Consensus 24 ~~~Cw~C~~~~~~--~~~fC~~C~~~q~~~~~~~~ 56 (183)
...|..|+.++-+ ..+.||.|+.+-+-.-..+|
T Consensus 140 ~a~~~~~g~~m~~~~~~~~cp~~g~~e~RKva~~y 174 (179)
T 3m7n_A 140 RALCSNCKTEMVREGDILKCPECGRVEKRKISTDY 174 (179)
T ss_dssp ECBCTTTCCBCEECSSSEECSSSCCEECCCBCTTT
T ss_pred EecccccCCceEECCCEEECCCCCCEEEEeccccc
Confidence 4579999996522 89999999998775444444
No 77
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.10 E-value=17 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCC---CCcccCCCCCCC
Q psy8513 23 LELKCWNCLKSLS---GKSLFCQHCSSV 47 (183)
Q Consensus 23 ~~~~Cw~C~~~~~---~~~~fC~~C~~~ 47 (183)
-+..|-+||.... .....||.|++-
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCC
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCC
Confidence 4678999999762 266899999983
No 78
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=40.34 E-value=21 Score=22.08 Aligned_cols=21 Identities=24% Similarity=0.755 Sum_probs=15.3
Q ss_pred CCCCCCCCCCC------CcccCCCCCC
Q psy8513 26 KCWNCLKSLSG------KSLFCQHCSS 46 (183)
Q Consensus 26 ~Cw~C~~~~~~------~~~fC~~C~~ 46 (183)
.|-.||..... +..-||-||.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 57888886442 6778888886
No 79
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=39.37 E-value=16 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCC-------CCcccCCCCCCCcCCC
Q psy8513 24 ELKCWNCLKSLS-------GKSLFCQHCSSVQKPD 51 (183)
Q Consensus 24 ~~~Cw~C~~~~~-------~~~~fC~~C~~~q~~~ 51 (183)
.+.|+.|+.|=. ...+.|.+||+..|+.
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~ 137 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVK 137 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTTTSSCCC--------
T ss_pred eeECCCCCCcCcEEEEeCCeEEEEecCCCCCCccC
Confidence 468999999722 1668899999988764
No 80
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.83 E-value=28 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCC-------------CcccCCCCCCCcC
Q psy8513 23 LELKCWNCLKSLSG-------------KSLFCQHCSSVQK 49 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~-------------~~~fC~~C~~~q~ 49 (183)
....|..|+.++.. ..|.|..|+....
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCccc
Confidence 35689999997643 4578889987553
No 81
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.81 E-value=15 Score=24.83 Aligned_cols=23 Identities=22% Similarity=0.665 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSS 46 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~ 46 (183)
....|+.|++.+..-.|-|. |+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~ 46 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGN 46 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSC
T ss_pred cCCcChhhCCcccccCeecC-CCC
Confidence 34579999998776567786 775
No 82
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=36.28 E-value=8.1 Score=32.65 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=15.6
Q ss_pred CCCC--CCCCCCCC------CcccCCCCCCC
Q psy8513 25 LKCW--NCLKSLSG------KSLFCQHCSSV 47 (183)
Q Consensus 25 ~~Cw--~C~~~~~~------~~~fC~~C~~~ 47 (183)
..|. .||.++.. ..+|||.|...
T Consensus 248 ~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 248 KPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (310)
T ss_dssp CTTSCEETTEECEECCE------ECTTTCCC
T ss_pred CCCCCCCCCCeEEEEEECCcccEECCCCcCC
Confidence 4688 99987642 89999999874
No 83
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=34.94 E-value=23 Score=22.82 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCcC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSSVQK 49 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~~q~ 49 (183)
.-..|.+|+.-. -.-.||.||..-.
T Consensus 5 ~mr~C~~CgvYT--Lk~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGLYT--LKEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCCEE--SSSBCSSSCSBCB
T ss_pred hceeCCCCCCEe--ccccCcCCCCcCC
Confidence 345799998743 2577999998543
No 84
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=34.36 E-value=12 Score=31.86 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=18.7
Q ss_pred CCCCCCCCC-C--C----CCCcccCCCCCCCcC
Q psy8513 24 ELKCWNCLK-S--L----SGKSLFCQHCSSVQK 49 (183)
Q Consensus 24 ~~~Cw~C~~-~--~----~~~~~fC~~C~~~q~ 49 (183)
...|+.|+. + + .....+|..||.|..
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 347999997 2 1 138899999998643
No 85
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=33.58 E-value=20 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCCCCCCCCCC-------CCcccCCCCCCCcCCC
Q psy8513 25 LKCWNCLKSLS-------GKSLFCQHCSSVQKPD 51 (183)
Q Consensus 25 ~~Cw~C~~~~~-------~~~~fC~~C~~~q~~~ 51 (183)
+.|+.|+.|=. ...+.|.+||+..|+.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~ 136 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGAKAPLK 136 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCCCcccC
Confidence 46999999722 1668899999988874
No 86
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=33.06 E-value=23 Score=25.13 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCCCCCCCC-CCCCcccCCCCCC
Q psy8513 24 ELKCWNCLKS-LSGKSLFCQHCSS 46 (183)
Q Consensus 24 ~~~Cw~C~~~-~~~~~~fC~~C~~ 46 (183)
...|..||.. .......|.+|+.
T Consensus 16 H~lCrRCG~~sfH~qK~~CgkCGY 39 (97)
T 2zkr_2 16 HTLCRRCGSKAYHLQKSTCGKCGY 39 (97)
T ss_dssp EECCTTTCSSCEETTSCCBTTTCT
T ss_pred CCcCCCCCCccCcCccccCcccCC
Confidence 4589999994 3457889999999
No 87
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.68 E-value=16 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCC---cccCCCCCCCc
Q psy8513 23 LELKCWNCLKSLSGK---SLFCQHCSSVQ 48 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~---~~fC~~C~~~q 48 (183)
.+..|+.|++.+... .|-| .|+.+-
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~F 41 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVF 41 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCC
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEe
Confidence 456899999988754 2778 787643
No 88
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=31.30 E-value=14 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCCC-------CcccCCCCCC
Q psy8513 23 LELKCWNCLKSLSG-------KSLFCQHCSS 46 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~-------~~~fC~~C~~ 46 (183)
....|.+|+....+ ....|..|+-
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 34578888875332 3466776653
No 89
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.67 E-value=14 Score=30.29 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCC----CCcccCCCCCCCcCCC
Q psy8513 23 LELKCWNCLKSLS----GKSLFCQHCSSVQKPD 51 (183)
Q Consensus 23 ~~~~Cw~C~~~~~----~~~~fC~~C~~~q~~~ 51 (183)
...-|+.||.++. .....|++|+.+.-|.
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCEECCC
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCEecCC
Confidence 4568999999762 2778999999865543
No 90
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=30.09 E-value=1e+02 Score=19.85 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHhcC
Q psy8513 143 LLMEILMLNEELDEA 157 (183)
Q Consensus 143 fLme~me~~E~le~a 157 (183)
+=..+|+++++||+-
T Consensus 21 IEvk~me~rD~LEeq 35 (61)
T 2e62_A 21 IEVALIEYRETLEEQ 35 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 335689999999984
No 91
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=30.01 E-value=12 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCC-----CCcccCC-CCCCC
Q psy8513 24 ELKCWNCLKSLS-----GKSLFCQ-HCSSV 47 (183)
Q Consensus 24 ~~~Cw~C~~~~~-----~~~~fC~-~C~~~ 47 (183)
...|+.|++++. ....||+ .|..|
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLI 38 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhh
Confidence 458999999864 3678897 56543
No 92
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.72 E-value=10 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCC--CcccCC--CCCCCcCCC
Q psy8513 24 ELKCWNCLKSLSG--KSLFCQ--HCSSVQKPD 51 (183)
Q Consensus 24 ~~~Cw~C~~~~~~--~~~fC~--~C~~~q~~~ 51 (183)
-..|+.|+.++.. ..++|+ .|+..-|+.
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAYPVR 41 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEEEEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEEeeE
Confidence 3589999998643 789999 899877654
No 93
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=29.61 E-value=13 Score=27.05 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCC--------CcccCCCCCCCcCCC
Q psy8513 24 ELKCWNCLKSLSG--------KSLFCQHCSSVQKPD 51 (183)
Q Consensus 24 ~~~Cw~C~~~~~~--------~~~fC~~C~~~q~~~ 51 (183)
-.-|+.||..+.. ..+.|..|+...+..
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 3479999986652 458999999988765
No 94
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=29.52 E-value=20 Score=28.33 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=19.9
Q ss_pred CCCCCCCCCC----C---CCCcccCCCCCCCcC
Q psy8513 24 ELKCWNCLKS----L---SGKSLFCQHCSSVQK 49 (183)
Q Consensus 24 ~~~Cw~C~~~----~---~~~~~fC~~C~~~q~ 49 (183)
...|+.|+.. + .....+|..||.+..
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 4479999982 1 138899999999865
No 95
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.43 E-value=47 Score=20.75 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCC----------------CcccCCCCCCCc
Q psy8513 23 LELKCWNCLKSLSG----------------KSLFCQHCSSVQ 48 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~----------------~~~fC~~C~~~q 48 (183)
....|..|+.++.. .-|.|..|+...
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L 45 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL 45 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcC
Confidence 45689999887652 347788887644
No 96
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.28 E-value=53 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCC------------CcccCCCCCCCcC
Q psy8513 23 LELKCWNCLKSLSG------------KSLFCQHCSSVQK 49 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~------------~~~fC~~C~~~q~ 49 (183)
....|..|+.++.. .-|.|..|+....
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCT
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCC
Confidence 45689999997642 4477888876543
No 97
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.14 E-value=27 Score=22.74 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=19.7
Q ss_pred CCCCCCCCCC-CCCCCcccCCCCCC
Q psy8513 23 LELKCWNCLK-SLSGKSLFCQHCSS 46 (183)
Q Consensus 23 ~~~~Cw~C~~-~~~~~~~fC~~C~~ 46 (183)
....|..||. +.......|.+|+.
T Consensus 16 tH~lCrRCG~~syH~qK~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRVSYNVKKGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSBCEETTTTEETTTCT
T ss_pred ceeeecccCcchhccccccccccCC
Confidence 4668999999 44558899999998
No 98
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.70 E-value=15 Score=31.06 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCcccCCCCCCC
Q psy8513 25 LKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 25 ~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
..|.-|+..|......|+.|+.-
T Consensus 209 l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 209 LSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEETTTCCEEECCTTSCSSSCCC
T ss_pred EEeCCCCCEEeecCcCCcCCCCC
Confidence 35777777776677788888874
No 99
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=28.68 E-value=23 Score=28.25 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=16.7
Q ss_pred CCCCCCCCCC----C-CCCcccCCCCCCC
Q psy8513 24 ELKCWNCLKS----L-SGKSLFCQHCSSV 47 (183)
Q Consensus 24 ~~~Cw~C~~~----~-~~~~~fC~~C~~~ 47 (183)
...||.||.. + .....+|.+|++-
T Consensus 14 ~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred CCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 4489999884 1 1135899999864
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.56 E-value=2.5e+02 Score=25.61 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcCCCccccCccCCHHHHHHHHHH
Q psy8513 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILML 150 (183)
Q Consensus 71 ~~Lk~~Yr~l~~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~~~~~~~d~~fLme~me~ 150 (183)
.+|+..|-++++. ..+.++.++.-|+.|+.-+..+. ..+- . ...+..++=..|..|
T Consensus 67 NELKnqLEdlsKn----------------sKdseqy~k~~~E~Lr~rq~q~~-dNdN---t----ynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 67 NKLKNSLFEYQKN----------------NKDSHSLTTNIMEILRGDFSSAN-NRDN---T----YNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHTHHHHH----------------HHHHHHHHHHHHHTTSSHHHHHH-HHHH---H----HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----------------chhHHHHHHHHHHHHHHHHHhhh-ccch---h----HHHHHHHHHHHHHHH
Confidence 6777777776542 22444555666666665554444 1110 0 011223344455556
Q ss_pred hHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHh
Q psy8513 151 NEELDEAS-SEEDLENLQTSIRATIEELTKKV 181 (183)
Q Consensus 151 ~E~le~a~-~~~~l~~l~~~~~~~i~~~~~~l 181 (183)
+++|++-- ....|+...++...+|+.|+.+|
T Consensus 123 KekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 123 KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655432 23344444445555555555544
No 101
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=28.54 E-value=13 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=16.2
Q ss_pred ccCCCCCCCCCCCCCC-------CcccCCCCCC
Q psy8513 21 KSLELKCWNCLKSLSG-------KSLFCQHCSS 46 (183)
Q Consensus 21 ~~~~~~Cw~C~~~~~~-------~~~fC~~C~~ 46 (183)
......|.+|+....+ ....|..||-
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl 36 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGL 36 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHH
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHH
Confidence 3456678888885332 3467777764
No 102
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.25 E-value=60 Score=20.09 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCC------------CcccCCCCCCCcC
Q psy8513 23 LELKCWNCLKSLSG------------KSLFCQHCSSVQK 49 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~------------~~~fC~~C~~~q~ 49 (183)
....|..|+.++.. .-|.|..|+....
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLA 42 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCS
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCC
Confidence 45689999987642 4578888876443
No 103
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.24 E-value=2.2 Score=31.12 Aligned_cols=27 Identities=7% Similarity=0.379 Sum_probs=15.2
Q ss_pred ChhhhcCccccCCCCHHHHHHHHHHHH
Q psy8513 55 NYYNVFDMKMQYLINNADLSKKFKHLQ 81 (183)
Q Consensus 55 ~~f~llgl~~~~~iD~~~Lk~~Yr~l~ 81 (183)
=||...|..+..++....|++++|++.
T Consensus 88 l~~~~~~~~rp~~~~~~~i~~r~r~~s 114 (115)
T 4hc9_A 88 LYYKLHNINRPLTMKKEGIQTRNRKMS 114 (115)
T ss_dssp HHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred HHHHHhCCCCCccccccchhhcccccc
Confidence 367777777666665556666666653
No 104
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.01 E-value=42 Score=23.12 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCC-CcccCCCCCCCc
Q psy8513 23 LELKCWNCLKSLSG-KSLFCQHCSSVQ 48 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~-~~~fC~~C~~~q 48 (183)
....|+.|++.+.. ..|-| .|+.+-
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~F 49 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNF 49 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEE
T ss_pred cCccchhhCCeecccCCeEc-CCCCEe
Confidence 45689999998876 47888 487743
No 105
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.55 E-value=47 Score=20.53 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=7.1
Q ss_pred CcccCCCCCC
Q psy8513 37 KSLFCQHCSS 46 (183)
Q Consensus 37 ~~~fC~~C~~ 46 (183)
....||.|++
T Consensus 35 ~dw~CP~Cg~ 44 (52)
T 1e8j_A 35 DDWACPVCGA 44 (52)
T ss_dssp TTCCCSSSCC
T ss_pred CCCcCCCCCC
Confidence 3457888887
No 106
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.31 E-value=37 Score=23.09 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=8.1
Q ss_pred CcccCCCCCCCc
Q psy8513 37 KSLFCQHCSSVQ 48 (183)
Q Consensus 37 ~~~fC~~C~~~q 48 (183)
...||..|..-.
T Consensus 32 G~vfC~~Cs~~~ 43 (88)
T 1wfk_A 32 GRAFCNGCLSFS 43 (88)
T ss_dssp CCEEETTTSCEE
T ss_pred CCEEChhHcCCc
Confidence 447888887643
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=24.85 E-value=30 Score=31.38 Aligned_cols=23 Identities=30% Similarity=0.859 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCC--------CcccCCCCCC
Q psy8513 24 ELKCWNCLKSLSG--------KSLFCQHCSS 46 (183)
Q Consensus 24 ~~~Cw~C~~~~~~--------~~~fC~~C~~ 46 (183)
...||+|+.++.. ...+|+.|+.
T Consensus 34 ~~~c~~c~~~~~~~~~~~~~~~~~~c~~c~~ 64 (681)
T 2pzi_A 34 KRFCWNCGRPVGRSDSETKGASEGWCPYCGS 64 (681)
T ss_dssp GCBCTTTCCBCSCC-----CCSEEECTTTCC
T ss_pred cccCccCCCcCCCcccCCCcccCCcCCCCCC
Confidence 3479999998642 3568999987
No 108
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=24.67 E-value=24 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCC---------------CcccCCCCCC
Q psy8513 24 ELKCWNCLKSLSG---------------KSLFCQHCSS 46 (183)
Q Consensus 24 ~~~Cw~C~~~~~~---------------~~~fC~~C~~ 46 (183)
...|++|+.+... -.+.|++||.
T Consensus 220 ~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGy 257 (404)
T 2qkd_A 220 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGH 257 (404)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCC
T ss_pred cccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCC
Confidence 3479999986321 5678999997
No 109
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=24.53 E-value=31 Score=21.93 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=6.8
Q ss_pred CCCCCCCCCCC
Q psy8513 24 ELKCWNCLKSL 34 (183)
Q Consensus 24 ~~~Cw~C~~~~ 34 (183)
+..|+.||+.+
T Consensus 3 PVRCFTCGkvi 13 (55)
T 1ef4_A 3 PVRCLSCGKPV 13 (55)
T ss_dssp SSSCSCTTSCC
T ss_pred CeecCCCCCCh
Confidence 45666666655
No 110
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=24.07 E-value=37 Score=18.77 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCcccCCCCCCCcC
Q psy8513 26 KCWNCLKSLSGKSLFCQHCSSVQK 49 (183)
Q Consensus 26 ~Cw~C~~~~~~~~~fC~~C~~~q~ 49 (183)
.|++|+..--.....|-.|+.-.|
T Consensus 7 ~C~~C~~~Nfa~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 7 LCNKCCLNNFRKRLKCFRCGADKF 30 (32)
T ss_dssp ECTTTCCEEETTCCBCTTTCCBTT
T ss_pred CcCcCcCCcChhcceecCCCCcCC
Confidence 477777643335677888877543
No 111
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=24.00 E-value=9.1 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=18.0
Q ss_pred CCCCCCCCCC-------CCcccCCCCCCCcCCC
Q psy8513 26 KCWNCLKSLS-------GKSLFCQHCSSVQKPD 51 (183)
Q Consensus 26 ~Cw~C~~~~~-------~~~~fC~~C~~~q~~~ 51 (183)
.|+.|+.|=. ...+-|..||+..++.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCccccc
Confidence 5899998621 1456699999876653
No 112
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.89 E-value=31 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 24 ELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 24 ~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
-..|.+|+.-. -.-.||.||..
T Consensus 5 mr~C~~Cg~YT--Lk~~CP~CG~~ 26 (60)
T 2aus_D 5 IRKCPKCGRYT--LKETCPVCGEK 26 (60)
T ss_dssp CEECTTTCCEE--SSSBCTTTCSB
T ss_pred ceECCCCCCEE--ccccCcCCCCc
Confidence 34799998743 25679999974
No 113
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=23.71 E-value=29 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCcCCCCCCChhhhcC
Q psy8513 25 LKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFD 61 (183)
Q Consensus 25 ~~Cw~C~~~~~~~~~fC~~C~~~q~~~~~~~~f~llg 61 (183)
..|-+|+..+... .||+|+..+ -..||.-+.-
T Consensus 24 rAC~~C~~v~~~d--~CPnCgs~~---~T~~w~G~Vi 55 (81)
T 3p8b_A 24 KACRHCHYITSED--RCPVCGSRD---LSEEWFDLVI 55 (81)
T ss_dssp EEETTTCBEESSS--SCTTTCCCC---EESCEEEEEE
T ss_pred HHHhhCCCccCCC--CCCCCCCCc---cCCccceEEE
Confidence 4699999977533 699999854 2345554443
No 114
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=23.65 E-value=30 Score=22.81 Aligned_cols=11 Identities=18% Similarity=0.863 Sum_probs=7.8
Q ss_pred CCCCCCCCCCC
Q psy8513 24 ELKCWNCLKSL 34 (183)
Q Consensus 24 ~~~Cw~C~~~~ 34 (183)
+..|+.||+.+
T Consensus 4 PVRCFTCGkvi 14 (66)
T 4ayb_N 4 PIRCFTCGSLI 14 (66)
T ss_dssp CSBCTTTCCBC
T ss_pred CcccCCCcHhH
Confidence 56777777765
No 115
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=23.63 E-value=19 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=19.6
Q ss_pred CCCCCC--CCCCCCC---CcccCCCCCCCcC
Q psy8513 24 ELKCWN--CLKSLSG---KSLFCQHCSSVQK 49 (183)
Q Consensus 24 ~~~Cw~--C~~~~~~---~~~fC~~C~~~q~ 49 (183)
...|++ |++.+.. ..+.|+.|+..-+
T Consensus 43 Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEEES
T ss_pred ECCCCchhcCCccccCCCCeEECCCCCCcCC
Confidence 458999 9998753 5578999986543
No 116
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=23.30 E-value=33 Score=26.65 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCC--CcccCCCCCCCcCCCCCCChhhhcCc
Q psy8513 25 LKCWNCLKSLSG--KSLFCQHCSSVQKPDPQNNYYNVFDM 62 (183)
Q Consensus 25 ~~Cw~C~~~~~~--~~~fC~~C~~~q~~~~~~~~f~llgl 62 (183)
..|+.|+..+.. ..+.|++|+.+.... .-|..++..
T Consensus 3 ~~Cp~C~~~~~~~~~~~~C~~~~~~~~~~--~Gy~~~~~~ 40 (269)
T 1p91_A 3 FSCPLCHQPLSREKNSYICPQRHQFDMAK--EGYVNLLPV 40 (269)
T ss_dssp BBCTTTCCBCEEETTEEECTTCCEEEBCT--TSCEECSCS
T ss_pred ccCCCCCccceeCCCEEECCCCCcCCcCC--CEEEEeecc
Confidence 469999887642 457999998765432 236555543
No 117
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.90 E-value=85 Score=17.32 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCcC
Q psy8513 25 LKCWNCLKSLSGKSLFCQHCSSVQK 49 (183)
Q Consensus 25 ~~Cw~C~~~~~~~~~fC~~C~~~q~ 49 (183)
-.|.+|+..--.....|..|+.-.|
T Consensus 7 W~C~~C~~~Nfa~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 7 WQCKTCSNVNWARRSECNMCNTPKY 31 (33)
T ss_dssp CBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred cccCCCCCccccccccccccCCcCC
Confidence 3577887754346678888887544
No 118
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.36 E-value=38 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=19.0
Q ss_pred CCCCCCCCCC-----CCCCcccCCCCCCCcC
Q psy8513 24 ELKCWNCLKS-----LSGKSLFCQHCSSVQK 49 (183)
Q Consensus 24 ~~~Cw~C~~~-----~~~~~~fC~~C~~~q~ 49 (183)
...|+.|+.. -......|..|+.+..
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCEEE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCEEe
Confidence 4579999984 2337788999999543
No 119
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.12 E-value=35 Score=20.69 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=13.3
Q ss_pred CCCCCCCCCC------------CCcccCCCCCC
Q psy8513 26 KCWNCLKSLS------------GKSLFCQHCSS 46 (183)
Q Consensus 26 ~Cw~C~~~~~------------~~~~fC~~C~~ 46 (183)
.|..||.... +....||.|++
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 5777776432 13458888886
No 120
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=22.07 E-value=16 Score=21.89 Aligned_cols=21 Identities=24% Similarity=0.716 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCC-------CcccCCCCC
Q psy8513 25 LKCWNCLKSLSG-------KSLFCQHCS 45 (183)
Q Consensus 25 ~~Cw~C~~~~~~-------~~~fC~~C~ 45 (183)
..|.+|+....+ ....|.+|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCG 29 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACG 29 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHH
Confidence 356677664321 335676665
No 121
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=22.03 E-value=23 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.458 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCC--------CcccCCCCCC
Q psy8513 25 LKCWNCLKSLSG--------KSLFCQHCSS 46 (183)
Q Consensus 25 ~~Cw~C~~~~~~--------~~~fC~~C~~ 46 (183)
.-|++||..+.. ...+|+.|+.
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred ccCchhCCccccccccCCCCcceECCCCCC
Confidence 469999997631 4578999983
No 122
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=21.78 E-value=40 Score=25.41 Aligned_cols=22 Identities=18% Similarity=0.625 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCc
Q psy8513 25 LKCWNCLKSLSGKSLFCQHCSSVQ 48 (183)
Q Consensus 25 ~~Cw~C~~~~~~~~~fC~~C~~~q 48 (183)
..|++|+.+. +..||..|.-..
T Consensus 72 ~~C~~Cg~~f--~~Y~C~~C~l~d 93 (143)
T 2dkt_A 72 QTCEDCSTLF--GEYYCSICHLFD 93 (143)
T ss_dssp SBCSSSCCBS--CSEECSSSCCEE
T ss_pred CcCCCCCccc--eeeEeceeeccc
Confidence 3688887776 567888887663
No 123
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=21.42 E-value=53 Score=19.47 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
....|..|+.+ ....|+.|..+
T Consensus 8 ~~~~C~~C~~~---~~~~C~~C~~~ 29 (52)
T 2jw6_A 8 KEQSCVNCGRE---AMSECTGCHKV 29 (52)
T ss_dssp ---CCSSSSSS---CSEECTTTCSS
T ss_pred cCCcCCCCCCC---CcCcCCCCCCE
Confidence 35689999985 46888888865
No 124
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=21.40 E-value=24 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=19.0
Q ss_pred CCCCCCCCCC-CCCCCcccCCCCCC
Q psy8513 23 LELKCWNCLK-SLSGKSLFCQHCSS 46 (183)
Q Consensus 23 ~~~~Cw~C~~-~~~~~~~fC~~C~~ 46 (183)
....|..||. +.......|.+|+.
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGy 39 (94)
T 3iz5_l 15 THTLCVRCGRRSFHLQKSTCSSCGY 39 (94)
T ss_dssp SEEECTTTCSEEEEGGGTEETTTCS
T ss_pred ccceecCcCchhhhcccccccccCC
Confidence 3457999999 34457889999999
No 125
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=21.31 E-value=53 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.693 Sum_probs=20.4
Q ss_pred CCCCCCCCCCC-----CCCcccCCCCCCC--cCCCC
Q psy8513 24 ELKCWNCLKSL-----SGKSLFCQHCSSV--QKPDP 52 (183)
Q Consensus 24 ~~~Cw~C~~~~-----~~~~~fC~~C~~~--q~~~~ 52 (183)
...|+.|+... ......|..|+.+ ||.+.
T Consensus 32 ~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGG 67 (81)
T ss_dssp EEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSS
T ss_pred EeECCCCCCeeEEEecCccEEEccCCCCEEeecCCC
Confidence 44799998842 2377889999996 55543
No 126
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.07 E-value=85 Score=19.39 Aligned_cols=34 Identities=21% Similarity=0.570 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCC--------------CcccCCCCCCCcCCCCCCChhhh
Q psy8513 23 LELKCWNCLKSLSG--------------KSLFCQHCSSVQKPDPQNNYYNV 59 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~--------------~~~fC~~C~~~q~~~~~~~~f~l 59 (183)
....|..|+.++.. .-|.|..|+.... ...||..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~---~~~~~~~ 51 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR---GQHFYAV 51 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT---TSCEEES
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC---cCcCEee
Confidence 45689999986642 3477888887552 3345543
No 127
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=20.96 E-value=38 Score=22.53 Aligned_cols=12 Identities=25% Similarity=0.874 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCC
Q psy8513 24 ELKCWNCLKSLS 35 (183)
Q Consensus 24 ~~~Cw~C~~~~~ 35 (183)
+..|..||+.+.
T Consensus 4 PVRCFTCGkvi~ 15 (70)
T 1twf_J 4 PVRCFSCGKVVG 15 (70)
T ss_dssp CSBCTTTCCBCT
T ss_pred CeecCCCCCChH
Confidence 456777776653
No 128
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=20.92 E-value=22 Score=25.02 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=18.7
Q ss_pred CCCCCCCCC-CCCCCcccCCCCCC
Q psy8513 24 ELKCWNCLK-SLSGKSLFCQHCSS 46 (183)
Q Consensus 24 ~~~Cw~C~~-~~~~~~~fC~~C~~ 46 (183)
...|..||. +.......|.+|+.
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGy 39 (94)
T 4a18_A 16 HTLCRRCGKATYHKQKLRCAACGY 39 (94)
T ss_dssp EEECTTTCSEEEETTTTEESSSCG
T ss_pred cceecCcCchhhhhccccccccCC
Confidence 457999999 44557889999999
No 129
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.91 E-value=60 Score=22.46 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCcCCCCCCChhhhcCccccCCCCHHHHHHHHHHHHHhhCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDK 88 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~~q~~~~~~~~f~llgl~~~~~iD~~~Lk~~Yr~l~~~~HPDk 88 (183)
++..|+.|-..+-. ..||.|+..... -++.+++.+ ..|-..|+++....+...
T Consensus 42 gH~fC~~Ci~~~~~--~~CP~Cr~~~~~---------~~~~~n~~l--~~l~~~~~~~~~~~~~~~ 94 (117)
T 1jm7_B 42 EHIFCSNCVSDCIG--TGCPVCYTPAWI---------QDLKINRQL--DSMIQLCSKLRNLLHDNE 94 (117)
T ss_dssp SCCBCTTTGGGGTT--TBCSSSCCBCSC---------SSCCCCHHH--HHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHhc--CCCcCCCCcCcc---------ccccccHHH--HHHHHHHHHHHHHHhhcc
Confidence 44456666554321 567777764321 234444444 677778888777766543
No 130
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=20.86 E-value=61 Score=20.10 Aligned_cols=22 Identities=32% Similarity=0.847 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCC
Q psy8513 23 LELKCWNCLKSLSGKSLFCQHCSSV 47 (183)
Q Consensus 23 ~~~~Cw~C~~~~~~~~~fC~~C~~~ 47 (183)
....|+.|+.. ....|..|..+
T Consensus 12 ~~~~C~~C~~~---~~~~Cs~C~~v 33 (60)
T 2od1_A 12 SSESCWNCGRK---ASETCSGCNTA 33 (60)
T ss_dssp CSSCCTTTSSC---CCEECTTTSCC
T ss_pred CCCccccCCCc---ccccCCCCCCe
Confidence 35689999984 46889888865
No 131
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=20.85 E-value=46 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=15.5
Q ss_pred CCCCCCC-CCCCCcccCCCCCCCcCC
Q psy8513 26 KCWNCLK-SLSGKSLFCQHCSSVQKP 50 (183)
Q Consensus 26 ~Cw~C~~-~~~~~~~fC~~C~~~q~~ 50 (183)
.|-.|.. +-....-||..|.+.-|+
T Consensus 21 KCmdcs~C~~~p~SDFC~gcs~~pp~ 46 (53)
T 2kmz_A 21 KCMDCASCRARPHSDFCLGCAAAPPA 46 (53)
T ss_dssp CCBCSTTCSSCCCCHHHHHHSSCSSC
T ss_pred hhhccccCCCCcccccccccccCCCC
Confidence 4555544 233478999999665444
No 132
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=20.12 E-value=1.9e+02 Score=18.90 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=23.9
Q ss_pred HhHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy8513 150 LNEELDEASSEEDLENLQTSIRATIEELTKKVN 182 (183)
Q Consensus 150 ~~E~le~a~~~~~l~~l~~~~~~~i~~~~~~l~ 182 (183)
+...|..+ +.+...+|...+...+.+++++|+
T Consensus 5 LE~~L~~~-~~~~~~~i~~~L~qAl~~vKr~L~ 36 (67)
T 3ph0_A 5 LETRLSGA-DPVFARELHAQLVQALGDVKRRLL 36 (67)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555 666788899998888888888874
Done!