RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8513
(183 letters)
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 86.9 bits (216), Expect = 5e-22
Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+Y+ +F + +Y I+ L+ +++ LQ Q HPDKF+N ++ E+ ++ ++ +N AY L
Sbjct: 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL 61
Query: 115 QNPLKRGLYLLSLQNISIEEDSKGT-DQKLLMEILMLNEELDEASSEED----LENLQTS 169
++PLKR YLLSL + + D LME + L EEL++ +D LE+
Sbjct: 62 KHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQSKDPEAALESFIKR 121
Query: 170 IRATIEELTKK 180
++ + ++
Sbjct: 122 VKKMFKTRLQQ 132
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 72.4 bits (178), Expect = 2e-16
Identities = 29/117 (24%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 51 DPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKA 110
+++++++F + ++ ++ A L ++ +Q+Q+HPD+F+ E+ ++ +++ N+A
Sbjct: 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62
Query: 111 YSILQNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILMLNEELDEASSEEDLENL 166
Y L++PLKR YLL L+ + + E++ LM+ + E +++A + D++ L
Sbjct: 63 YQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARAARDVDAL 119
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 70.3 bits (172), Expect = 1e-15
Identities = 32/108 (29%), Positives = 65/108 (60%)
Query: 56 YYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQ 115
++ +FD++ + ++ L+ +++ L ++HPD+F++ + EQ ++ S+ LN+AY L+
Sbjct: 6 HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65
Query: 116 NPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDL 163
+P +R YLL+L + + D + L++ + L EEL+E E DL
Sbjct: 66 SPPRRARYLLALSGHEVPLEVTVHDPEFLLQQMQLREELEELQDEADL 113
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 63.0 bits (153), Expect = 6e-13
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 66 YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
+ ++ + L K+++ LQ+Q HPD ++ +EQ + S+ LN+AY L++PL+R Y+L
Sbjct: 1 WQLDQSRLRKRYRQLQAQYHPD--ASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYML 58
Query: 126 SLQNISIEEDSKGT-DQKLLMEILMLNEELDEASSEEDLENLQ 167
L NI + ++ D ME+L + +ELDE +D L+
Sbjct: 59 KLLNIDLTQEQTSERDTAFPMELLKVRDELDEIEQMDDEAGLE 101
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 62.0 bits (151), Expect = 2e-12
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+ + +F + + I+ L +++ LQ HPD+F ++ EQ + S+ +N AY L
Sbjct: 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61
Query: 115 QNPLKRGLYLLSLQNISIEEDSKGTDQKL--LMEILMLNEELDEASS----EEDLENLQT 168
++PL R YLL+L + + T + + L+E L EEL+EA E+ L+ L
Sbjct: 62 KDPLLRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGV 121
Query: 169 SIRATIEELTK 179
I+A + + K
Sbjct: 122 EIKADQDAIKK 132
>gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 58.6 bits (142), Expect = 4e-11
Identities = 39/131 (29%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 113
NN + +FD+ + + ++NA LS+++ LQ LHPD F+N + +EQ ++ S+ +N A I
Sbjct: 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQI 61
Query: 114 LQNPLKRGLYLLSL---QNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSI 170
L++P+ R +++L + ++EE S D LM+ + E+L+E ++D + L T+
Sbjct: 62 LKDPILRAEAIIALNTGEQQNLEEKST-QDMAFLMQQMEWREQLEEIEQQQDEDAL-TAF 119
Query: 171 RATIEELTKKV 181
I++ + +
Sbjct: 120 SKEIKQEQQAI 130
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 49.9 bits (119), Expect = 5e-08
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
NY+ + + +Y I+ L K++ +Q + HPDK K +E+ + +S LN AYS L
Sbjct: 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKA--KTLQEKEQNLIIASELNNAYSTL 60
Query: 115 QNPLKRGLYLLSLQNISI-EEDSKGTDQKLLMEILM-LNEELDEASSEEDLENLQ 167
++ LKR Y+L LQNI++ +E ++ L + I E ++ DLE ++
Sbjct: 61 KDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIK 115
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 43.7 bits (104), Expect = 1e-06
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY + + ++ ++ K ++ L + HPDK E+ E +N+AY +L
Sbjct: 1 DYYEILGVPRD--ASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKE-----INEAYEVL 53
Query: 115 QNPLKRGLYL 124
+P KR +Y
Sbjct: 54 SDPEKRAIYD 63
>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain. This
domain is the HSCB C-terminal oligomerisation domain and
is found on co-chaperone proteins.
Length = 78
Score = 39.5 bits (93), Expect = 6e-05
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 140 DQKLLMEILMLNEELDEAS---SEEDLENLQTSIRATIEELTKKVNN 183
D + LME + L E L+EA EE L+ L+ ++ I+EL +++
Sbjct: 3 DPEFLMEQMELREALEEARASDDEEALDELKKEVKQRIKELLEELEE 49
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY + + + ++ K ++ L + HPDK +E +E +N+AY +L
Sbjct: 2 DYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGDKEE----AEEKFKEINEAYEVL 55
Query: 115 QNPLK 119
+P K
Sbjct: 56 SDPEK 60
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 36.8 bits (86), Expect = 3e-04
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY++ + ++ ++ K ++ L + HPDK + + E+ E +N+AY +L
Sbjct: 1 DYYDILGVP--PDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKE-----INEAYEVL 53
Query: 115 QN 116
+
Sbjct: 54 SD 55
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 39.4 bits (92), Expect = 4e-04
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 111
+YY V + ++ ++ ++ K F+ L + HPDK + E+ E +N+AY
Sbjct: 2 ASKDYYEV--LGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKE-----INEAY 54
Query: 112 SILQNPLKRGLY 123
+L +P K+ Y
Sbjct: 55 QVLSDPQKKAQY 66
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 39.0 bits (91), Expect = 7e-04
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 70 NADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L + HPD + EQ E +N+AY IL +P KR Y
Sbjct: 19 EEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKE-----INEAYEILSDPQKRAQY 67
>gnl|CDD|235780 PRK06330, PRK06330, transcript cleavage factor/unknown domain
fusion protein; Validated.
Length = 718
Score = 39.0 bits (91), Expect = 8e-04
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 66 YLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLL 125
Y++ LS +SQL S ++ I Y+ ++ +S L+N R +
Sbjct: 273 YVLRPKGLS-----HESQLE-RSLSGSTDVDKKIQTIYT-FVRDLHSELKNEENRKSLIK 325
Query: 126 SLQNISIEEDSKGTDQKLLMEI-LMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
LQ++ +EE + LL++ L+L+E L E SSE D EN+ + +++ VNN
Sbjct: 326 KLQDLDLEEL----NSALLLQRALLLSEFLGEKSSELDCENI---ASLSEDQIEDIVNN 377
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 38.4 bits (89), Expect = 0.001
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQE-EQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K FK L + HPD NK+ E+ E +N+AY++L +P KR +Y
Sbjct: 20 EIKKAFKKLARKYHPD--VNKSPGAEEKFKE-----INEAYTVLSDPEKRRIY 65
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 38.0 bits (89), Expect = 0.001
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
+ ++ K ++ L + HPD+ +K EE+ I+E AY +L +P KR Y
Sbjct: 13 SEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINE--------AYEVLSDPEKRAQY 61
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 37.6 bits (88), Expect = 0.002
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQA-----ISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L + HPD+ N +E I+E AY +L +P KR Y
Sbjct: 19 EEIKKAYRKLAKKYHPDR--NPGDKEAEEKFKEINE--------AYEVLSDPEKRAAY 66
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 36.7 bits (85), Expect = 0.004
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 72 DLSKKFKHLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ + +K L + HPD+ N+ + EQ E + +AY +L +P KR +Y
Sbjct: 20 EIKRAYKRLVKEWHPDRHPENRKEAEQKFKE-----IQEAYEVLSDPQKRAMY 67
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 36.5 bits (84), Expect = 0.005
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126
D+ K+++ L + HPDK E ++ E + KAY +L + +R YL
Sbjct: 114 DIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 34.9 bits (80), Expect = 0.015
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 72 DLSKKFKHLQSQLHPDKF-SNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
D+ K F+ L + HPD NK + E+ E +++AY +L +P KR Y
Sbjct: 19 DIKKAFRELAKKWHPDLHPGNKAEAEEKFKE-----ISEAYEVLSDPQKRRQY 66
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 34.9 bits (80), Expect = 0.016
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ ++ L + HPD+ N+E+ A +E ++ +N+AY++L + KR Y
Sbjct: 17 DEIKSAYRKLALKYHPDR----NKEKGA-AEKFAQ-INEAYAVLSDAEKRAHY 63
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 34.6 bits (79), Expect = 0.018
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY + + + + ADL K + L Q HPD K+ E++ +N AY +L
Sbjct: 4 DYYQI--LGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKF------KEINAAYDVL 55
Query: 115 QNPLKRGLY 123
++ KR Y
Sbjct: 56 KDEQKRAAY 64
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 34.4 bits (79), Expect = 0.022
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L + HPDK + + E+ E +N+AY +L N KR Y
Sbjct: 19 EIKKAYRKLALKYHPDKNPDNKEAEEHFKE-----VNEAYEVLSNDDKRRRY 65
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 34.0 bits (78), Expect = 0.028
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQE-EQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L + HPD NKN E E+ E +N+AY +L +P KR LY
Sbjct: 19 EIKKAYRRLARKYHPD--FNKNPEAEEKFKE-----INEAYQVLSDPEKRKLY 64
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 34.0 bits (79), Expect = 0.029
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 70 NAD---LSKKFKHLQSQLHPDKFS-NKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
NA + K ++ L + HPD+ +K EE+ I E AY +L +P KR Y
Sbjct: 15 NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKE--------AYEVLSDPQKRAAY 66
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 33.7 bits (77), Expect = 0.036
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEE--QAISETYSSYLNKAYSILQNPLKRGLY 123
D+ K ++ L + HPDK + EE + ISE AY++L + KR Y
Sbjct: 21 DIKKAYRKLAMKYHPDKNKEPDAEEKFKEISE--------AYAVLSDAEKRAQY 66
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 33.8 bits (77), Expect = 0.042
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYS 112
+ +YY++ + N+ ++ ++ L + HPDK + E+ E +AY
Sbjct: 3 ERSYYDILGVSKS--ANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEA-----TEAYE 55
Query: 113 ILQNPLKRGLY 123
IL++P KR Y
Sbjct: 56 ILRDPKKRQAY 66
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 32.8 bits (75), Expect = 0.067
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L + HPD+ + E+ E +AY +L +P KRG+Y
Sbjct: 20 EIKKSYRKLAMKYHPDRNPGDKEAEELFKEA-----AEAYEVLSDPKKRGIY 66
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 32.7 bits (75), Expect = 0.083
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQA-ISETYSSYLNKAYSILQNPLKRGLY 123
A++ + ++ L +LHPD N ++E Q E ++ AY +L +P KR +
Sbjct: 18 AEIKRAYRKLARELHPD--VNPDEEAQEKFKE-----ISVAYEVLSDPEKRRIV 64
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 32.1 bits (73), Expect = 0.12
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
A++ K ++ L + HPD + E+ E +++AY +L + KR Y
Sbjct: 24 AEIKKAYRKLAREYHPDANKGDAKAEERFKE-----ISEAYDVLSDEKKRKEY 71
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 31.7 bits (72), Expect = 0.17
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L + HPDK + E+ E +++AY +L + KR Y
Sbjct: 17 EIKKAYRKLAVKYHPDKNPGDAEAEKRFKE-----VSEAYEVLSDAQKRESY 63
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 31.7 bits (72), Expect = 0.18
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY V + ++ ++ K ++ Q HPDK + E+ E +AY +L
Sbjct: 6 DYYEVLGVSKTATVD--EIKKAYRKKAIQYHPDKNPGDKEAEEKFKEA-----AEAYDVL 58
Query: 115 QNPLKRGLY 123
+P KR Y
Sbjct: 59 SDPDKRSRY 67
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 30.8 bits (69), Expect = 0.32
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+YY + +++ N + K ++ L + HPD+ + + E+ +N+AY +L
Sbjct: 4 SYYEILEVEKHS--NQETIKKSYRKLALKYHPDRNAGDKEAEEKFK-----LINEAYGVL 56
Query: 115 QNPLKRGLY 123
+ KR LY
Sbjct: 57 SDEKKRALY 65
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 30.9 bits (70), Expect = 0.38
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L Q HPD+ + + EQ E +AY +L++ KR Y
Sbjct: 20 EIKKAYRKLALQYHPDRNPDNPEAEQKFKEA-----AEAYEVLRDAEKRARY 66
>gnl|CDD|205428 pfam13248, zf-ribbon_3, zinc-ribbon domain. This family consists
of a single zinc ribbon domain, ie half of a pair as in
family DZR. pfam12773.
Length = 26
Score = 26.9 bits (60), Expect = 0.82
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 26 KCWNCLKSLSGKSLFCQHC 44
C NC L + FC +C
Sbjct: 4 FCPNCGAELEPDAKFCPNC 22
>gnl|CDD|233894 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK. The
flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model [Cellular processes, Chemotaxis and motility].
Length = 324
Score = 29.6 bits (67), Expect = 0.92
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 96 EQAISETYSSYLNKAYSILQNPLKRGL------YLLSLQNISIEEDSKGTDQKLLMEILM 149
+++ +S L+K I + GL + +LQ ++ DS+ Q +L
Sbjct: 79 SAGYADSRASGLSKIEQIFNDLDGSGLSTYLNNFFNALQELAKNPDSEALRQAVLESAQA 138
Query: 150 LNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
L + ++ SSE L++L+ +I A I+ ++N+
Sbjct: 139 LANQFNQTSSE--LQDLRKNINAEIKSAVTEINS 170
>gnl|CDD|152929 pfam12495, Vip3A_N, Vegetative insecticide protein 3A N terminal.
This family of proteins is found in bacteria. Proteins
in this family are typically between 170 and 789 amino
acids in length. The family is found in association with
pfam02018. Vip3A represents a novel class of proteins
insecticidal to lepidopteran insect larvae.
Length = 177
Score = 28.9 bits (64), Expect = 1.1
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 26/112 (23%)
Query: 70 NADLSK---KFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126
N +LSK K + Q+Q+ ++ N + AI+ YL K S+L + +K+ Y LS
Sbjct: 71 NTELSKEILKIANEQNQV----LNDVNNKLDAINTMLRVYLPKITSMLSDVMKQN-YALS 125
Query: 127 LQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELT 178
LQ I L+++L E S + D+ N+ I +T+ E+T
Sbjct: 126 LQ------------------IEYLSKQLQEISDKLDIINVNVLINSTLTEIT 159
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 29.0 bits (64), Expect = 1.1
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 75 KKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNI 130
K ++ L + HPD+ + +E +N+AY IL +P +R Y +
Sbjct: 25 KAYRKLALKYHPDRNPGDPKV----AEEKFKEINEAYEILSDPERRAEYDKIGADN 76
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 29.2 bits (66), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 72 DLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
+L + ++ L + HPD NK E + + +N+AY +L +P R Y
Sbjct: 19 ELKRAYRRLARKYHPD--VNK---EPGAEDRFKE-INRAYEVLSDPETRARY 64
>gnl|CDD|205420 pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family
consists of a single zinc ribbon domain, ie half of a
pair as in family DZR. pfam12773.
Length = 23
Score = 25.9 bits (58), Expect = 1.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 26 KCWNCLKSLSGKSLFCQHC 44
C NC L + FC +C
Sbjct: 1 FCPNCGAELPDGAKFCPNC 19
>gnl|CDD|221766 pfam12773, DZR, Double zinc ribbon. This family consists of a
pair of zinc ribbon domains.
Length = 45
Score = 26.6 bits (59), Expect = 1.4
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 24 ELKCWNCLKSLSGKSLFCQHC 44
+C +C + + FC +C
Sbjct: 24 PRECPSCGAPVDPNARFCPNC 44
Score = 26.6 bits (59), Expect = 1.5
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 27 CWNCLKSLSGKSLFCQHC 44
C NC + FC HC
Sbjct: 1 CPNCGAENPSGAKFCPHC 18
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 29.0 bits (64), Expect = 1.5
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYS 112
+ +YY V + + ++ K F+ L + HPD+ + +E +N+A
Sbjct: 1 KRDYYEVLGIDRD--ADEQEIKKAFRKLAKKYHPDR-NKAPDAASIFAE-----INEAND 52
Query: 113 ILQNPLKRGLY 123
+L NP KR Y
Sbjct: 53 VLSNPKKRANY 63
>gnl|CDD|165285 PHA02982, PHA02982, hypothetical protein; Provisional.
Length = 251
Score = 28.5 bits (63), Expect = 1.9
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 10 GSETALCTETAKSLELKCWNC-LKSLSGKSLFCQHCSSVQKPD 51
G+ + + L C+ C K GK C+ C +QK D
Sbjct: 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKED 139
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases
[General function prediction only].
Length = 225
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 14 ALCTETAKSLELKCWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFD 61
+ C + C C LS + C C KP P ++
Sbjct: 28 SGCQADLPLIGNLCPLCGLPLSSHACRCGECL--AKPPPFERLRSLGS 73
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 27.7 bits (61), Expect = 3.4
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 68 INNADLSKKFKHLQSQLHPDK---FSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYL 124
I A K +K+ HPDK NK +E + + KA +L + R Y
Sbjct: 63 ILKAHKKKVYKY-----HPDKTAAGGNKGCDE------FFKLIQKAREVLGDRKLRLQYD 111
Query: 125 LSLQNISIEEDSKGTD 140
+ + + T
Sbjct: 112 SNDFDADVPPPRIYTP 127
>gnl|CDD|218475 pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell
division protein which interacts with FtsZ. FtsZ is part
of a mid-cell cytokinetic structure termed the Z-ring
that recruits a hierarchy of fission related proteins
early in the bacterial cell cycle. The interaction of
FtsZ with ZapA drives its polymerisation and promotes
FtsZ filament bundling thereby contributing to the
spatio-temporal tuning of the Z-ring.
Length = 89
Score = 26.0 bits (58), Expect = 4.4
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 138 GTDQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVN 182
T++ L++ L L +EL + E + IE L +++
Sbjct: 45 STERLLVLAALNLADELLKLKKELAELEELEELAERIEALAERLE 89
>gnl|CDD|234471 TIGR04104, cxxc_20_cxxc, cxxc_20_cxxc protein. This small,
uncommon, poorly conserved protein is found primarily
in the Firmicutes. It features are pair of CxxC motifs
separated by about 20 amino acids, followed by a highly
hydrophobic region of about 45 amino acids. It has no
conserved gene neighborhood, and its function is
unknown.
Length = 94
Score = 26.2 bits (58), Expect = 4.5
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 26 KCWNCLKSLSGKSLF-----------CQHCSSVQKPDP 52
C NC + S K L C +C + Q
Sbjct: 2 ICKNCNEKFSYKELLKSLFSLYRPIKCPNCGTKQYLTA 39
>gnl|CDD|184767 PRK14611, PRK14611, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 275
Score = 27.0 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 150 LNEELDEASSEEDLENLQTSIRA 172
LNE L SEE+L L +SI A
Sbjct: 109 LNELLGNPLSEEELFELASSISA 131
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 27.1 bits (60), Expect = 5.4
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSI 113
Y V ++ +++ K ++ L + HPDK + + ++ +++AY +
Sbjct: 28 EKLYEVLNLSKD--CTTSEIKKAYRKLAIKHHPDKGGDPEKFKE---------ISRAYEV 76
Query: 114 LQNPLKRGLY 123
L +P KR +Y
Sbjct: 77 LSDPEKRKIY 86
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 26.9 bits (60), Expect = 5.5
Identities = 16/112 (14%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 65 QYLINNADLSKKFKHLQSQLHP--DKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGL 122
+YL + ++ LQ +L ++ + ++ + + + ++ +
Sbjct: 56 RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQK 115
Query: 123 YLLSLQNISIEEDSKGTD---QKLLMEILMLNEELDEASSEEDLENLQTSIR 171
L ++ +S ++ D ++L E+ L +E + +E E LQ + +
Sbjct: 116 ELARIKQLS--ANAIELDEENRELREELAELKQENEALEAE--NERLQENEQ 163
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 27.2 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDK 88
QN YY D + + +++N LS F++L +L+ DK
Sbjct: 296 QNLYYEASDEEEKDILSNGYLSDHFRYLGKELNLDK 331
>gnl|CDD|163642 cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins,
metallophosphatase domain. YvnB (BSU35040) is an
uncharacterized Bacillus subtilis protein with a
metallophosphatase domain. This family includes
bacterial and eukaryotic proteins similar to YvnB.
YvnB belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 214
Score = 26.5 bits (59), Expect = 6.8
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 50 PDPQN---NYYNVFDMKMQYLINNAD 72
PD Q +Y VFD + ++++NA+
Sbjct: 7 PDTQYYTESYPEVFDAQTDWIVDNAE 32
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finger is named
after four proteins that it has been found in: Fab1,
YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been
shown to bind two Zn++ ions. The FYVE finger has eight
potential zinc coordinating cysteine positions. Many
members of this family also include two histidines in a
motif R+HHC+XCG, where + represents a charged residue
and X any residue. We have included members which do
not conserve these histidine residues but are clearly
related.
Length = 68
Score = 25.0 bits (55), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 27 CWNCLKSLSGKSLFCQHCSS 46
C NC GK +FC CSS
Sbjct: 28 CRNC-----GK-VFCSSCSS 41
>gnl|CDD|180630 PRK06582, PRK06582, coproporphyrinogen III oxidase; Provisional.
Length = 390
Score = 26.7 bits (59), Expect = 7.7
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 109 KAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENL 166
A + P K L + +N+ I+ ++K T Q+++ EILM+ L + + LE
Sbjct: 286 SAIMMWHKPEK-WLDAVKTKNVGIQTNTKLTHQEIIEEILMMGLRLSKGINISTLEQK 342
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 26.9 bits (60), Expect = 8.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 153 ELDEASSEEDLENLQTSIRATIEELTKKVNN 183
EA S ED L +SIR E LT+ V N
Sbjct: 687 LDGEALSPEDRAELLSSIREESERLTRLVTN 717
>gnl|CDD|225831 COG3294, COG3294, HD supefamily hydrolase [General function
prediction only].
Length = 269
Score = 26.3 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 119 KRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNE 152
KR ++ LS Q I E +G ++ + +E+ M NE
Sbjct: 193 KRDIHSLSAQAIERVEIQEGDERPVRIEVEMQNE 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.126 0.347
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,547,567
Number of extensions: 751148
Number of successful extensions: 884
Number of sequences better than 10.0: 1
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 99
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.3 bits)