RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8513
(183 letters)
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 129 bits (325), Expect = 3e-38
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 17 TETAKSLELKCWNC---LKSLSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADL 73
A S +CWNC FC C ++Q PDP +Y+++ D + ++ A L
Sbjct: 3 ASQAGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKL 62
Query: 74 SKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE 133
+++ LQ +HPD FS ++Q E+ SE +S+ +N AY L PL RGLYLL L I I
Sbjct: 63 QHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIP 122
Query: 134 EDSKGT-DQKLLMEILMLNEELDEASSEEDLENLQTSIRATIEELTKKVNN 183
E + D++ L+EI+ +NE+L EA SE ++ +++ ++A +E T V++
Sbjct: 123 ERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSS 173
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 107 bits (269), Expect = 3e-30
Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
NY+ +F + +Q+ ++ + LS +F+ LQ + HPD F+ ++ ++ ++ ++ +N AY L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64
Query: 115 QNPLKRGLYLLSLQNISIE-EDSKGTDQKLLMEILMLNEELDEASSEEDLENLQTSIRAT 173
++PL+R YLLSLQ I + E D LME + L EEL+ ++ D E +
Sbjct: 65 KDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDTK 124
Query: 174 IEELTKKVNN 183
+ + +
Sbjct: 125 VTAMQRHYLA 134
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 102 bits (256), Expect = 3e-28
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+Y+ +F + +Y ++ LS +F+ LQ Q HPDKF++ +Q EQ + S+ +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 115 QNPLKRGLYLLSLQNISIE-EDSKGTDQKLLMEILMLNEELDEASSEED---LENLQTSI 170
++PL R YLLSL + E D LME L L EELDE +D LE+ +
Sbjct: 62 RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRV 121
Query: 171 RATIEELTKK 180
+ + +
Sbjct: 122 KKMFDTRHQL 131
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 95.0 bits (236), Expect = 3e-25
Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 20/151 (13%)
Query: 44 CSSVQKPDPQNNYYNVFDMKM-----QYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQA 98
+ VQ+ +Y +F + I+ + L K+++ LQ+Q HPD +++
Sbjct: 2 NALVQRRFTST-FYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--- 57
Query: 99 ISETYSSYLNKAYSILQNPLKRGLYLLSLQ---NISIEEDSKGT---DQKLLMEILMLNE 152
SS LN+AY L++PL+R Y+L L +++ E+ S D +LL+++L +++
Sbjct: 58 -----SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHD 112
Query: 153 ELDEASSEEDLENLQTSIRATIEELTKKVNN 183
EL + E ++ L+ + I+++ ++
Sbjct: 113 ELSQMDDEAGVKLLEKQNKERIQDIEAQLGQ 143
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 43.7 bits (103), Expect = 5e-06
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
++ ++ N + K + + HPD K +E+ + + +N Y +
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKK-----MNTLYKKM 62
Query: 115 QNPLKRGLY 123
++ +K
Sbjct: 63 EDGVKYAHQ 71
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 42.5 bits (100), Expect = 6e-06
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
++ ++ N + K + + HPD K +E+ + + +N Y +
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKK-----MNTLYKKM 59
Query: 115 QNPLKRGLY 123
++ +K
Sbjct: 60 EDGVKYAHQ 68
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 41.4 bits (96), Expect = 4e-05
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 64 MQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
M L+ + K ++ +HPDK + + E+ A + LN A+S +N ++ LY
Sbjct: 125 MADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYA--KMIFMELNDAWSEFENQGQKPLY 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 5e-05
Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 38/150 (25%)
Query: 24 ELKCWNCLKSLSGKSLF----CQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKH 79
C + KS+ H + D + +F L ++ +KF
Sbjct: 32 NFDCKDVQDMP--KSILSKEEIDHI--IMSKDAVSGTLRLFWT---LLSKQEEMVQKF-- 82
Query: 80 LQSQLHPD------KFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLSLQNISIE 133
++ L + + ++ ++ Y ++ Y+ Q K N+S
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--------NVSRL 134
Query: 134 EDSKGTDQKLLMEILMLNEELDEASSEEDL 163
+ L L + L E +++
Sbjct: 135 Q-----------PYLKLRQALLELRPAKNV 153
Score = 39.1 bits (90), Expect = 5e-04
Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 42/189 (22%)
Query: 23 LELKCWNCLKSL-------------SGKS-LFCQHCSS--VQKPDPQNNYYNVFDMKMQY 66
L+L+ L L SGK+ + C S VQ + +F + ++
Sbjct: 138 LKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ----CKMDFKIFWLNLKN 191
Query: 67 LINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLYLLS 126
+ + + + L Q+ P+ S + +S + P + LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLV 249
Query: 127 LQNISIEEDSKG----------TDQKLLMEILM--------LNEELDEASSEEDLENLQT 168
L N+ + T K + + L L+ + +E L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 169 SIRATIEEL 177
+ ++L
Sbjct: 310 YLDCRPQDL 318
Score = 27.5 bits (60), Expect = 3.0
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 12/90 (13%)
Query: 34 LSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINN--------ADLSKKFKHLQSQLH 85
L K ++ N Y+ +N + ++ L
Sbjct: 503 LEQK--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 86 PDKFSNKNQEEQAISETYSSYLNKAYSILQ 115
K+++ + A+ + +A+ +Q
Sbjct: 561 CSKYTDLLR--IALMAEDEAIFEEAHKQVQ 588
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
+ K F L + HPDK + + E + I+E AY L + +R Y
Sbjct: 22 RQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAE--------AYETLSDANRRKEY 68
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 36.8 bits (85), Expect = 0.002
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ ++ + FK L +LHPDK N + +N+AY +L++ R Y
Sbjct: 15 SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLK-----INRAYEVLKDEDLRKKY 64
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 35.3 bits (82), Expect = 0.002
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K +K L + HPD+ + E E + +AY +L + KR Y
Sbjct: 18 REIRKAYKRLAMKYHPDRNQGDKEAEAKFKE-----IKEAYEVLTDSQKRAAY 65
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 36.5 bits (85), Expect = 0.002
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 42 QHCSSVQKPDPQNNYYNVFDMKMQ--YLI-------NNADLSKKFKHLQSQLHPDKFSNK 92
H SS +N Y+ M+++ Y I + + ++ L + HPD
Sbjct: 5 HHHSSGVDLGTENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN 64
Query: 93 NQEE--QAISETYSSYLNKAYSILQNPLKRGLY 123
+ E + ++E A+ +L++ +R Y
Sbjct: 65 DAEAKFKDLAE--------AWEVLKDEQRRAEY 89
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 34.6 bits (80), Expect = 0.003
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
N +L K ++ + HPDK E+ ISE A+ IL +P KR +Y
Sbjct: 21 NEQELKKGYRKAALKYHPDK--PTGDTEKFKEISE--------AFEILNDPQKREIY 67
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 34.6 bits (80), Expect = 0.003
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQA------ISETYSSYLNKAYSILQNPLKRGLY 123
D+ K ++ Q HPDK N + +E A ++E AY +L + KR +Y
Sbjct: 17 DDIKKAYRRKALQWHPDK--NPDNKEFAEKKFKEVAE--------AYEVLSDKHKREIY 65
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 34.2 bits (78), Expect = 0.003
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 53 QNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYS 112
+ + + Q + + + +K LHPDK + ++ LN +
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQE---------LNSLWG 60
Query: 113 ILQNPLKRGLY 123
+ +
Sbjct: 61 TFKTEVYNLRM 71
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 34.2 bits (78), Expect = 0.005
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 64 MQYLINNADLSKKFKHLQSQLHPDKFSNKN--QEEQAISETYSSYLNKAYSILQN 116
+ +I + K ++ LHPDK K ++ ++E L +A+
Sbjct: 48 LMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 33.3 bits (77), Expect = 0.006
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
++ ++ + ++ + HPDK EE+ I+E AY +L +P KR ++
Sbjct: 16 SDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE--------AYDVLSDPRKREIF 64
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 33.0 bits (76), Expect = 0.008
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEE--QAISETYSSYLNKAYSILQNPLKRGLY 123
++ +L K ++ + + HPDK N + E + IS+ AY +L + KR +Y
Sbjct: 21 SDNELKKAYRKMALKFHPDK--NPDGAEQFKQISQ--------AYEVLSDEKKRQIY 67
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 33.5 bits (77), Expect = 0.008
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
N Y+V ++ + + L+K ++ L + HPD+ NK ++ A E + AY L
Sbjct: 16 NCYDVLEVN-REEFDKQKLAKAYRALARKHHPDRVKNKEEKLLA--EERFRVIATAYETL 72
Query: 115 QNPLKRGLY 123
++ + Y
Sbjct: 73 KDDEAKTNY 81
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 33.2 bits (76), Expect = 0.011
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 47 VQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEE--QAISETYS 104
+++ + +++ +K + +++K ++ L LHPDK E+ +A+
Sbjct: 20 IRRIRNSKDSWDMLGVKPG--ASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVN--- 74
Query: 105 SYLNKAYSILQNPLKRG 121
A + L +K G
Sbjct: 75 -----ARTALLKNIKSG 86
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 32.6 bits (75), Expect = 0.013
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
++ DL K ++ L + HPDK E AI AY++L NP KR Y
Sbjct: 20 SDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGT--------AYAVLSNPEKRKQY 68
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 33.7 bits (77), Expect = 0.013
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 69 NNADLSKKFKHLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
N +DL +K++ L HPDK ++ +++A+ IL N + Y
Sbjct: 23 NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREY 78
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 33.2 bits (76), Expect = 0.015
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
+ +FK + HPDK + + + L KA IL N R Y
Sbjct: 35 EQILAEFKVRALECHPDKHPENPKAVETFQK-----LQKAKEILTNEESRARY 82
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 32.8 bits (75), Expect = 0.015
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
A + + HPD+ S + + + +++AY +L + R Y
Sbjct: 32 AQIKAAYYRQCFLYHPDRNSGSAEAAERFTR-----ISQAYVVLGSATLRRKY 79
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 32.7 bits (74), Expect = 0.016
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 64 MQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQN 116
M L+ + K ++ +HP K + + E+ A + LN A+S +N
Sbjct: 41 MADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYA--KMIFMELNDAWSEFEN 91
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 32.8 bits (75), Expect = 0.016
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
D+ K ++ L + HPDK + + E +N A++IL + KR +Y
Sbjct: 32 DDIKKSYRKLALKYHPDKNPDNPEAADKFKE-----INNAHAILTDATKRNIY 79
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 32.3 bits (74), Expect = 0.021
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 16/59 (27%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQA------ISETYSSYLNKAYSILQNPLKRGLY 123
D+ K ++ L + HPDK N + +E+A +SE AY +L + KR LY
Sbjct: 24 EDIKKAYRKLALRWHPDK--NPDNKEEAEKKFKLVSE--------AYEVLSDSKKRSLY 72
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 32.0 bits (73), Expect = 0.022
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQ--AISETYSSYLNKAYSILQNPLKRGLY 123
AD+ K +K L + HPDK + E++ IS+ AY IL N KR Y
Sbjct: 32 ADIKKAYKKLAREWHPDKNKDPGAEDRFIQISK--------AYEILSNEEKRTNY 78
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 34.0 bits (77), Expect = 0.024
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 34 LSGKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKN 93
+ H S + N+Y++ + ++ ++ + FK L +LHPDK N
Sbjct: 1 MGSSHHHHHHSSGHIEGRHDQNFYSLLGVSKT--ASSREIRQAFKKLALKLHPDKNPNNP 58
Query: 94 QEEQAISETYSSYLNKAYSILQNPLKRGLY 123
+ +N+AY +L++ R Y
Sbjct: 59 NAHGDFLK-----INRAYEVLKDEDLRKKY 83
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 31.8 bits (73), Expect = 0.024
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K + L + HPD + + ++ S+ L +AY +L + +KR Y
Sbjct: 22 KEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ-----LAEAYEVLSDEVKRKQY 69
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 31.8 bits (73), Expect = 0.026
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQA------ISETYSSYLNKAYSILQNPLKRGLY 123
+ K ++ L + HPDK N +E+A ++E AY +L + KR +Y
Sbjct: 24 EAIKKAYRKLALKWHPDK--NPENKEEAERRFKQVAE--------AYEVLSDAKKRDIY 72
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 31.6 bits (72), Expect = 0.033
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 69 NNADLSKKFKHLQSQLHPDKFS-NKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
N +DL +K++ L HPDK S + +++A+ IL N + Y
Sbjct: 29 NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKY 84
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 33.1 bits (76), Expect = 0.040
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 69 NNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K ++ L Q HPD F N+ ++++A E + A +L +P R +
Sbjct: 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKA--EKKFIDIAAAKEVLSDPEMRKKF 447
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.090
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 21/45 (46%)
Query: 95 EEQAISETYSSYLNKAYSILQNPLKRGLY------LLSLQNISIE 133
E+QA+ + LQ LK LY L++ ++E
Sbjct: 18 EKQALKK------------LQASLK--LYADDSAPALAI-KATME 47
Score = 25.7 bits (55), Expect = 8.5
Identities = 5/16 (31%), Positives = 7/16 (43%), Gaps = 3/16 (18%)
Query: 75 KKFKHLQSQLH---PD 87
+ K LQ+ L D
Sbjct: 20 QALKKLQASLKLYADD 35
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 28.5 bits (64), Expect = 0.42
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 71 ADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLKRGLY 123
++ K + L + HPDK N E I+ +L + L+ K+
Sbjct: 31 SERKKIIRRLYLKWHPDK----NPENHDIANEVFKHLQNEINRLE---KQAFL 76
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.89
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 63 KMQYLINNA--DLSKKFKHLQSQLHPDKFSNKNQEEQAISE 101
Q A DL + + Q+ +K +N+ ++ +
Sbjct: 108 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 26.3 bits (57), Expect = 6.2
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 128 QNISIEEDSKGTDQKLLMEILMLNEELDE--ASSEEDLENLQTSIRATIEELTKKVN 182
Q ++E + ++L+E E +E + + R + ++ +
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 25.9 bits (56), Expect = 6.5
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 152 EELDEASSEEDLENLQTSIRATIEELTKKVNN 183
+ELD A S+ + + + +EE ++ +
Sbjct: 99 QELDAA-SKVMEQEWREKAKKDLEEWNQRQSE 129
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 26.7 bits (59), Expect = 1.4
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 26 KCWNCLKSLSGKS-------LFCQHCSSVQKPDP 52
C C SL GK +FCQ C S D
Sbjct: 37 NCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI 70
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 27.0 bits (59), Expect = 3.1
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 23/129 (17%)
Query: 54 NNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNK-----NQEEQAISETYSSYLN 108
+ Y + + + + Q P + +EE+ I Y L+
Sbjct: 131 HIYQDWHSFLLWEFASRI---TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLH 187
Query: 109 KAYSILQNPLKRGLYLLSLQNISIEEDSKGTDQKLLMEILMLNEELDEASSEEDLENLQT 168
+ L+ +L NI +L+L+ D + E+L
Sbjct: 188 GQHEAWLIHKTTKLHFEALMNI---------------PVLVLDVNDDFSEEVTKQEDLMR 232
Query: 169 SIRATIEEL 177
+ ++ L
Sbjct: 233 EVNTFVKNL 241
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 27.1 bits (60), Expect = 4.2
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 16 CTETAKSLELK-CWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYNVFD 61
C +SL+L CL+ GK LF Q + ++ P + +
Sbjct: 47 CEALRESLDLGFEGMCLEQPIGKRLFQQFLRTHEQHGPALQLWKDIE 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.0 bits (60), Expect = 4.9
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 70 NADLSKKFKHLQSQLHPDKFSNKNQEEQAIS-----ETYSSYLNKAYSILQNPLKRGLYL 124
+ L K LQ ++ K+ E+ + T + L L+ +
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-AKN 981
Query: 125 LSLQNISIEEDSKGTD---QKLLMEILMLNEELDEASSE-----EDLENLQTSIRATIEE 176
+ + +S++E+ + E + E D+ E +L+ T ++ EE
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
Query: 177 LTKKVNN 183
L +++++
Sbjct: 1042 LNRRIHD 1048
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 26.3 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 5 PSAIL---GSETALCTETAKSLE 24
P IL GSE +L E AK+L
Sbjct: 555 PDIILVATGSEVSLSVEAAKTLA 577
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A
{Vanderwaltozyma polyspora}
Length = 341
Score = 25.9 bits (57), Expect = 9.8
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 61 DMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLN 108
+ + L + D + + ++N E A + S+ N
Sbjct: 69 SLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAF--MHKSFPN 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.126 0.347
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,450,892
Number of extensions: 129710
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 70
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)