RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8513
(183 letters)
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 59.3 bits (143), Expect = 6e-13
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+Y+ +F + +Y ++ LS +F+ LQ Q HPDKF++ +Q EQ + S+ +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 115 QNPLKRGLYLLSLQ 128
++PL R YLLSL
Sbjct: 62 RHPLMRAEYLLSLH 75
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 40.3 bits (94), Expect = 1e-05
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 52 PQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAY 111
+ + M L+ + K ++ +HPDK Q + ++ LN A+
Sbjct: 31 AGETKWKP--VGMADLVTPEQVKKVYRKAVLVVHPDK--ATGQPYEQYAKMIFMELNDAW 86
Query: 112 SILQNPLKRGLY 123
S +N ++ LY
Sbjct: 87 SEFENQGQKPLY 98
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 33.9 bits (77), Expect = 0.002
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDK-FSNKNQEEQAISETYSSYLNKAYSI 113
++Y++ N +DL +K++ L HPDK ++ +++A+ I
Sbjct: 17 DWYSILGADPS--ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 114 LQNPLKRGLY 123
L N + Y
Sbjct: 75 LGNEETKKKY 84
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 32.3 bits (73), Expect = 0.005
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 9/69 (13%)
Query: 55 NYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 114
+ + Q + + + +K LHPDK + LN +
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA---------LMQELNSLWGTF 62
Query: 115 QNPLKRGLY 123
+ +
Sbjct: 63 KTEVYNLRM 71
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal
oligomerisation domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 32.9 bits (75), Expect = 0.005
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 134 EDSKGTDQKLLMEILMLNEELDEASSEED---LENLQTSIRATIEELTKKVNN 183
E D LME L L EELDE +D LE+ ++ + + +
Sbjct: 6 EQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVE 58
>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of
cytochrome cd1-nitrite reductase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 112
Score = 27.3 bits (59), Expect = 0.64
Identities = 7/64 (10%), Positives = 17/64 (26%)
Query: 36 GKSLFCQHCSSVQKPDPQNNYYNVFDMKMQYLINNADLSKKFKHLQSQLHPDKFSNKNQE 95
K ++ Q C+ + + L + P+ S+
Sbjct: 34 AKQIYFQRCAGCHGVLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGSSGELS 93
Query: 96 EQAI 99
++ I
Sbjct: 94 KEQI 97
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 26.2 bits (57), Expect = 0.78
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 27 CWNCLKSLSGKSLFCQHCSSVQKPDPQNN 55
C C +FC CS+ P +
Sbjct: 27 CRQCGN------IFCAECSAKNALTPSSK 49
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 25.4 bits (55), Expect = 5.2
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 56 YYNVFDMKMQYLINNADLSKKFKHL---QSQLHPDKFSNKNQEEQAISETYSSYLNKAYS 112
Y+ + + + L N DL + L + KF + +++ YL K Y
Sbjct: 194 YWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYL 253
Query: 113 ILQNPLKRGLYLLSLQNI 130
+ L LY S++ +
Sbjct: 254 LTHETLYYDLYRKSMEGM 271
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.4 bits (50), Expect = 5.5
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 6/26 (23%)
Query: 27 CWNCLKSLSGKSLFCQHCSSVQKPDP 52
C +C K FC CSS P
Sbjct: 19 CLDCKK------NFCMTCSSQVGNGP 38
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 23.5 bits (50), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 139 TDQKLLMEILMLNEELDEASSEEDLENLQTSI 170
++++LL + +EL EA +ED ENL+ +
Sbjct: 36 SEERLLSRLFEEMDELREAVEKEDWENLRDEL 67
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 23.0 bits (49), Expect = 8.5
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 27 CWNCLKSLSGKSLFCQHCSSVQKPDPQNNYYN 58
C +C +FCQ SS P P Y
Sbjct: 24 CRSCGG------VFCQEHSSNSIPLPDLGIYE 49
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 23.1 bits (49), Expect = 9.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 27 CWNCLKSLSGKSLFCQHCSSVQKPDPQNNYY 57
C NC + FC C++ Q P P+
Sbjct: 32 CRNCGQV------FCGQCTAKQCPLPKYGIE 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.347
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 604,424
Number of extensions: 26309
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 20
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.8 bits)