Query psy8516
Match_columns 451
No_of_seqs 426 out of 3426
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 20:56:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0790|consensus 100.0 9.1E-97 2E-101 681.8 27.2 424 2-448 2-448 (600)
2 PHA02742 protein tyrosine phos 100.0 5.5E-50 1.2E-54 380.0 20.1 204 233-445 8-214 (303)
3 PHA02747 protein tyrosine phos 100.0 2.8E-49 6.1E-54 376.3 20.4 207 232-446 7-216 (312)
4 PHA02740 protein tyrosine phos 100.0 3.2E-49 7E-54 371.7 18.3 197 234-445 9-209 (298)
5 PHA02746 protein tyrosine phos 100.0 1.4E-48 3.1E-53 372.8 20.0 207 233-446 8-234 (323)
6 PHA02738 hypothetical protein; 100.0 1.4E-48 3.1E-53 372.3 18.6 204 232-446 7-211 (320)
7 KOG4228|consensus 100.0 3.7E-48 8.1E-53 397.8 15.2 209 233-450 522-731 (1087)
8 KOG0792|consensus 100.0 4.2E-46 9E-51 378.2 19.1 205 238-447 853-1061(1144)
9 smart00194 PTPc Protein tyrosi 100.0 3.2E-45 7E-50 343.1 21.4 189 256-447 2-191 (258)
10 KOG4228|consensus 100.0 8.2E-45 1.8E-49 373.3 15.5 258 182-448 732-1016(1087)
11 KOG0791|consensus 100.0 3E-43 6.4E-48 322.8 13.5 210 231-446 75-284 (374)
12 cd00047 PTPc Protein tyrosine 100.0 1.8E-40 3.9E-45 306.1 20.0 161 284-446 1-162 (231)
13 KOG0793|consensus 100.0 7.9E-42 1.7E-46 331.6 9.4 193 252-447 730-925 (1004)
14 PF00102 Y_phosphatase: Protei 100.0 2.5E-37 5.4E-42 286.3 16.7 161 282-445 1-166 (235)
15 COG5599 PTP2 Protein tyrosine 100.0 4.5E-37 9.8E-42 269.0 14.6 166 273-444 44-214 (302)
16 PRK15375 pathogenicity island 100.0 1.3E-34 2.7E-39 278.7 16.3 197 234-446 253-455 (535)
17 KOG0789|consensus 100.0 7.8E-31 1.7E-35 263.3 14.8 161 276-440 121-290 (415)
18 KOG1264|consensus 100.0 8.8E-30 1.9E-34 251.4 16.4 197 3-231 533-740 (1267)
19 KOG4637|consensus 100.0 4.8E-30 1E-34 233.1 12.1 224 1-229 20-428 (464)
20 KOG4278|consensus 99.9 2.9E-23 6.2E-28 202.2 1.2 201 1-218 149-362 (1157)
21 smart00252 SH2 Src homology 2 99.8 2E-20 4.4E-25 143.6 11.2 81 4-85 1-82 (84)
22 KOG0197|consensus 99.8 1.1E-20 2.5E-25 183.0 11.0 197 1-212 78-294 (468)
23 cd00173 SH2 Src homology 2 dom 99.8 4.4E-20 9.5E-25 145.1 12.0 80 5-85 1-81 (94)
24 PF00017 SH2: SH2 domain; Int 99.8 4.4E-20 9.6E-25 139.1 9.5 76 6-81 1-77 (77)
25 KOG0790|consensus 99.7 1.6E-17 3.5E-22 155.7 8.7 102 3-106 109-219 (600)
26 KOG0194|consensus 99.7 1.3E-16 2.9E-21 157.1 11.3 200 2-247 47-256 (474)
27 cd00173 SH2 Src homology 2 dom 99.7 7.9E-16 1.7E-20 120.8 10.6 93 111-229 1-94 (94)
28 KOG4226|consensus 99.6 5.3E-16 1.2E-20 136.5 9.7 100 1-102 278-377 (379)
29 smart00252 SH2 Src homology 2 99.6 9.9E-16 2.1E-20 117.4 10.1 82 110-215 1-83 (84)
30 PF00017 SH2: SH2 domain; Int 99.6 7.6E-16 1.6E-20 116.0 9.1 76 112-210 1-77 (77)
31 KOG4792|consensus 99.5 4E-14 8.7E-19 121.5 8.0 93 4-105 11-111 (293)
32 KOG2996|consensus 99.5 4.2E-14 9.1E-19 136.7 6.3 101 2-105 683-784 (865)
33 KOG1264|consensus 99.4 4.5E-13 9.7E-18 134.1 8.9 95 2-104 646-740 (1267)
34 KOG4226|consensus 99.4 1.2E-12 2.6E-17 115.5 10.3 98 108-229 279-377 (379)
35 PF14633 SH2_2: SH2 domain; PD 99.4 7.2E-12 1.6E-16 111.3 12.2 172 3-212 37-218 (220)
36 KOG4278|consensus 99.4 1.9E-12 4.2E-17 127.4 9.0 99 104-230 146-245 (1157)
37 KOG4637|consensus 99.3 1.9E-12 4.2E-17 118.9 7.9 99 107-229 20-119 (464)
38 KOG1930|consensus 99.3 1.4E-11 3.1E-16 115.1 8.4 139 3-152 211-369 (483)
39 KOG2996|consensus 99.2 7E-12 1.5E-16 121.5 5.3 100 109-232 684-784 (865)
40 KOG0197|consensus 99.1 1.8E-10 4E-15 112.4 8.1 99 107-231 78-185 (468)
41 KOG4792|consensus 99.1 2.3E-10 4.9E-15 98.6 6.9 83 110-217 11-101 (293)
42 KOG1856|consensus 99.0 1.1E-09 2.4E-14 114.5 11.4 176 2-215 1106-1289(1299)
43 KOG3601|consensus 99.0 4.4E-11 9.4E-16 102.5 -1.4 84 2-86 56-139 (222)
44 KOG0194|consensus 98.7 9.5E-08 2.1E-12 94.9 9.4 98 110-234 49-152 (474)
45 KOG3601|consensus 98.6 2.4E-08 5.2E-13 85.9 2.8 114 71-217 27-141 (222)
46 KOG1930|consensus 98.5 1.5E-07 3.2E-12 88.7 6.1 98 109-230 211-326 (483)
47 KOG3697|consensus 98.3 8.6E-07 1.9E-11 79.6 5.4 97 3-104 200-343 (345)
48 KOG3751|consensus 98.3 3.6E-07 7.8E-12 88.6 3.1 90 2-91 517-612 (622)
49 KOG4566|consensus 97.5 0.00012 2.6E-09 66.8 5.1 83 2-85 50-139 (258)
50 smart00404 PTPc_motif Protein 97.3 0.00037 8E-09 55.1 4.6 35 413-447 1-35 (105)
51 smart00012 PTPc_DSPc Protein t 97.3 0.00037 8E-09 55.1 4.6 35 413-447 1-35 (105)
52 KOG3751|consensus 96.9 0.0009 1.9E-08 65.7 3.8 84 109-214 518-606 (622)
53 KOG3697|consensus 96.6 0.0029 6.2E-08 57.5 4.9 66 164-230 276-342 (345)
54 PF14633 SH2_2: SH2 domain; PD 95.7 0.042 9.1E-07 49.4 7.5 72 116-212 43-123 (220)
55 PF02762 Cbl_N3: CBL proto-onc 95.0 0.094 2E-06 37.8 5.7 46 3-48 1-47 (86)
56 KOG4566|consensus 92.7 0.22 4.7E-06 45.8 5.3 83 131-214 50-139 (258)
57 KOG1856|consensus 91.0 0.5 1.1E-05 51.4 6.4 81 3-85 1204-1288(1299)
58 PTZ00242 protein tyrosine phos 90.8 0.39 8.5E-06 41.5 4.7 34 326-359 16-49 (166)
59 KOG2836|consensus 84.7 3.7 8E-05 33.4 6.2 82 324-450 15-97 (173)
60 KOG3508|consensus 83.1 0.061 1.3E-06 57.3 -5.7 55 4-58 81-136 (932)
61 KOG1785|consensus 75.0 3.6 7.8E-05 39.7 3.8 49 3-51 255-305 (563)
62 PF02061 Lambda_CIII: Lambda P 74.2 4 8.6E-05 25.6 2.6 24 416-439 2-25 (45)
63 PF02762 Cbl_N3: CBL proto-onc 71.0 15 0.00031 26.8 5.2 25 154-178 24-48 (86)
64 KOG3667|consensus 69.6 7.2 0.00016 40.6 4.8 50 7-57 566-616 (682)
65 smart00557 IG_FLMN Filamin-typ 42.7 31 0.00068 26.2 3.3 29 21-50 51-79 (93)
66 PHA02740 protein tyrosine phos 37.4 7.9 0.00017 36.9 -1.0 42 182-226 223-264 (298)
67 smart00557 IG_FLMN Filamin-typ 36.8 39 0.00084 25.7 3.0 26 154-179 54-79 (93)
68 KOG0791|consensus 35.0 18 0.00039 35.0 0.9 44 182-228 289-332 (374)
69 PHA02742 protein tyrosine phos 31.1 12 0.00027 35.7 -0.8 35 182-219 231-265 (303)
70 COG0832 UreB Urea amidohydrola 29.0 1E+02 0.0022 23.9 3.9 27 394-420 16-43 (106)
71 PF00630 Filamin: Filamin/ABP2 28.9 58 0.0013 24.8 2.9 25 26-50 69-93 (101)
72 TIGR00192 urease_beta urease, 28.5 66 0.0014 24.9 2.9 28 393-420 15-43 (101)
73 cd00407 Urease_beta Urease bet 28.4 69 0.0015 24.9 3.0 28 393-420 15-43 (101)
74 PTZ00393 protein tyrosine phos 28.1 62 0.0013 29.6 3.2 35 325-359 91-125 (241)
75 PHA02746 protein tyrosine phos 28.0 18 0.0004 34.9 -0.2 41 182-225 249-289 (323)
76 PRK13203 ureB urease subunit b 27.7 67 0.0015 25.0 2.8 28 393-420 15-43 (102)
77 PHA02738 hypothetical protein; 27.5 19 0.00042 34.7 -0.1 43 182-227 229-271 (320)
78 COG5061 ERO1 Oxidoreductin, en 26.8 33 0.00072 32.8 1.2 38 315-355 135-172 (425)
79 COG5599 PTP2 Protein tyrosine 26.7 49 0.0011 30.6 2.3 25 182-209 220-244 (302)
80 PHA02747 protein tyrosine phos 26.6 20 0.00043 34.5 -0.3 35 182-219 231-265 (312)
81 KOG1785|consensus 24.4 1.2E+02 0.0025 29.8 4.4 37 141-177 264-301 (563)
82 PF06165 Glyco_transf_36: Glyc 24.0 1.9E+02 0.0041 22.8 5.0 32 391-422 58-89 (110)
83 PRK13204 ureB urease subunit b 21.9 1E+02 0.0022 25.9 3.1 39 382-420 27-66 (159)
84 PRK13201 ureB urease subunit b 21.8 98 0.0021 25.3 2.8 28 393-420 15-43 (136)
85 KOG1147|consensus 21.8 12 0.00027 37.9 -2.6 28 326-353 475-502 (712)
86 PF00630 Filamin: Filamin/ABP2 21.5 73 0.0016 24.3 2.1 26 154-179 68-93 (101)
87 PRK13205 ureB urease subunit b 21.1 1E+02 0.0022 25.8 2.8 28 393-420 15-43 (162)
88 PRK13202 ureB urease subunit b 20.7 1.2E+02 0.0025 23.7 3.0 27 394-420 16-44 (104)
89 PF00699 Urease_beta: Urease b 20.3 50 0.0011 25.5 0.9 29 392-420 13-42 (100)
90 PRK13198 ureB urease subunit b 20.1 1.3E+02 0.0027 25.3 3.2 40 381-420 31-71 (158)
No 1
>KOG0790|consensus
Probab=100.00 E-value=9.1e-97 Score=681.78 Aligned_cols=424 Identities=72% Similarity=1.176 Sum_probs=402.2
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHHH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQFY 81 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~y 81 (451)
.+..|||..|+-.+||.||+..+.+|+||.|.|++++|+|+||++.++++.|++|...++.|.+.+++.|.++.+||+||
T Consensus 2 ~s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyy 81 (600)
T KOG0790|consen 2 TSRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYY 81 (600)
T ss_pred cchhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HhccccccccccceeeecCCCCCCCCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEe
Q psy8516 82 MENQGQLKKRNQEVIELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVR 161 (451)
Q Consensus 82 ~~~~~~l~~~~~~~i~L~~Pv~~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR 161 (451)
+.+.+.|....|..+.|++|+.|.+|..+.||||.++..+||.+|.+++ ++|+||||
T Consensus 82 me~~~~lkekng~~ielK~pl~cAdptserWfHG~LsgkeAekLl~ekg-----------------------k~gsfLvR 138 (600)
T KOG0790|consen 82 MEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLQEKG-----------------------KHGSFLVR 138 (600)
T ss_pred HhhhHHHHhcCCCEEEecCCCccCCchhhhhhccCCCchhHHHHHHhcC-----------------------CCccEEEe
Confidence 9999999999999999999999999999999999999999999998877 79999999
Q ss_pred cCCCCCCCeEEEEEeCC---------eeeeEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEeccccccc
Q psy8516 162 ESQSKPGDFVLSVRTDD---------KVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNAT 232 (451)
Q Consensus 162 ~s~~~~~~~~ls~~~~~---------~v~h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~~t 232 (451)
+|.+.||+|+||++.++ +|.|+.|.|.+++|.++++..|+|+.+||+||+.+++++..|.++.|++|+..|
T Consensus 139 eSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~sltdLidhykknpmvEt~gtvv~LrqP~naT 218 (600)
T KOG0790|consen 139 ESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLNAT 218 (600)
T ss_pred ccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccchHHHHHHHhccCchhhhcceeEEeecccccc
Confidence 99999999999999976 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHhhhccC----CCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCC
Q psy8516 233 RITVSNIHDRVTELQKENS----SKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDV 308 (451)
Q Consensus 233 ~i~~~~l~~~v~~l~~~~~----~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~ 308 (451)
.|.++.|..++.+|.++.. .++||++||+.|+.+++...+++..+..++|+.||||.||+|||||||+|.+.+++.
T Consensus 219 rI~Aa~i~~Rve~l~k~~e~~d~~k~GfwEEFesLqq~~~~~~~sr~EG~r~eN~~KNRYkNIlPfDHtRViL~d~~~n~ 298 (600)
T KOG0790|consen 219 RINAADIENRVEELNKKQESEDTAKAGFWEEFESLQQQEVKNLHSRLEGQRPENKGKNRYKNILPFDHTRVILQDRDPNI 298 (600)
T ss_pred chhhhhHHHHHHHHhccccchhhhhcchhHHHHHhhhhhhHhhhhhhccccchhhccccccccCcccceeeEeecCCCCC
Confidence 9999999999999988644 788999999999998888888999999999999999999999999999999988899
Q ss_pred CCCCceeeEEeecC--------CCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceE
Q psy8516 309 PGAEYINANYIQSE--------DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKT 380 (451)
Q Consensus 309 ~~~~yinAs~v~~~--------~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~ 380 (451)
+++||||||||-.- ..++.||||||-|.+|+.|||+|||++|+++|||-|...|.|++||.+|||+++....
T Consensus 299 pgsdYINAnyi~~~~q~~~~~~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERgK~KC~~YWPee~~~e~ 378 (600)
T KOG0790|consen 299 PGSDYINANYIMIEFQRLCNNSKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERGKSKCVKYWPEEGALEE 378 (600)
T ss_pred ccchhcccchhhhhhhhccCccccccceeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhcccccccccCCcccchhh
Confidence 99999999998532 1346899999999999999999999999999999999999999999999999888889
Q ss_pred EeeEEEEEeeeeeecCEEEEEEEEEeCC--CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhccc
Q psy8516 381 YGAVCVNNMYESVTTDYILREFLVSKGS--ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIH 448 (451)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~~~~l~v~~~~--~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~~ 448 (451)
||.+.|++.++....+|+.|+|.++... ...|.|+||||..|||||||.+|..+|+|+++|+..|+..
T Consensus 379 ~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l 448 (600)
T KOG0790|consen 379 YGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESL 448 (600)
T ss_pred cCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccc
Confidence 9999999999999999999999998543 6789999999999999999999999999999999998754
No 2
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=5.5e-50 Score=380.01 Aligned_cols=204 Identities=31% Similarity=0.531 Sum_probs=178.3
Q ss_pred ccc-ccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCC
Q psy8516 233 RIT-VSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 311 (451)
Q Consensus 233 ~i~-~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~ 311 (451)
.+. +.+|.+++++.. ...-+.+||+.|..... ..++..+..++|..||||.||+|||++||+|+..+ .++
T Consensus 8 ~~~~~~~~~~~~~~~~----~~~~i~~E~~~i~~~~~--~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~~---~~~ 78 (303)
T PHA02742 8 KNSFAKNCEQLIEESN----LAEILKEEHEHIMQEIV--AFSCNESLELKNMKKCRYPDAPCFDRNRVILKIED---GGD 78 (303)
T ss_pred ccCcHHHHHHHHhcCC----HHHHHHHHHHHHhcCCC--CCchhhccChhhhhcCCCCCCCCCCCCEEEeCCCC---CCC
Confidence 345 556666555443 34568889999977543 34667788999999999999999999999998643 258
Q ss_pred CceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCC-CCCceEEeeEEEEEee
Q psy8516 312 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPD-DHQSKTYGAVCVNNMY 390 (451)
Q Consensus 312 ~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~-~~~~~~~~~~~v~~~~ 390 (451)
||||||||+|+..+++|||||||+++|+.|||+|||+++|.+|||||+..|.++++|.+|||. +++...||.|+|++.+
T Consensus 79 dYINAsyI~g~~~~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~ 158 (303)
T PHA02742 79 DFINASYVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKK 158 (303)
T ss_pred CcEEEeeecCCCCCCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEE
Confidence 999999999998889999999999999999999999999999999999999999999999985 4567889999999999
Q ss_pred eeeecCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhh
Q psy8516 391 ESVTTDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQ 445 (451)
Q Consensus 391 ~~~~~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~ 445 (451)
.....+|+.++|.|++.+ +.+|.|+||||++|||+|+|.++..+++|+..|++.+
T Consensus 159 ~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~ 214 (303)
T PHA02742 159 IKSFRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREAD 214 (303)
T ss_pred EEEcCCEEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 888889999999999865 7899999999999999999999999999999999754
No 3
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=2.8e-49 Score=376.29 Aligned_cols=207 Identities=28% Similarity=0.457 Sum_probs=179.5
Q ss_pred ccccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCC
Q psy8516 232 TRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 311 (451)
Q Consensus 232 t~i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~ 311 (451)
+.+.+.+|.++++++. ...-+.+||+.|...... .+...+..++|..||||.||+|||++||+|.+..+ ..+
T Consensus 7 ~~~~~~~f~~~~~~~~----~~~~i~~E~~~i~~~~~~--~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~~--~~~ 78 (312)
T PHA02747 7 AECRAIDFLKRRNQLN----CFGIIRDEHHQIILKPFD--GLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGG--STS 78 (312)
T ss_pred cccCHHHHHHHHhCCC----HHHHHHHHHHHHhcCCCC--ChhhhhhCchhhccCCCCCCCCCCCCEeEecCCCC--CCC
Confidence 4466677777666654 345688999999765432 24456778999999999999999999999986432 347
Q ss_pred CceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeecccc-ccCcccceeecCC-CCCceEEeeEEEEEe
Q psy8516 312 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEM-ERGKNKCAKYWPD-DHQSKTYGAVCVNNM 389 (451)
Q Consensus 312 ~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~-e~~~~~c~~YwP~-~~~~~~~~~~~v~~~ 389 (451)
||||||||+|+..+++|||||+|+++|++|||+||||++|.+|||||... |.++++|.+|||. +++...+|+|.|++.
T Consensus 79 dYINAsyV~g~~~~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~ 158 (312)
T PHA02747 79 DYIHANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETL 158 (312)
T ss_pred CcEEeeeecCCCCCCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEE
Confidence 99999999999989999999999999999999999999999999999999 8999999999995 456788999999999
Q ss_pred eeeeecCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhc
Q psy8516 390 YESVTTDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 446 (451)
Q Consensus 390 ~~~~~~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~ 446 (451)
+.....+|+.|.|.|++.. +.+|.|+||||++|||+|+|.++..+++|+..|+..++
T Consensus 159 ~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~ 216 (312)
T PHA02747 159 KTSVRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRK 216 (312)
T ss_pred EEEecCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 9888899999999999865 78999999999999999999999999999999987654
No 4
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=3.2e-49 Score=371.74 Aligned_cols=197 Identities=16% Similarity=0.343 Sum_probs=170.4
Q ss_pred ccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCC--CCCCCCCCCCceEecCCCCCCCCC
Q psy8516 234 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNR--YKNILPFDHTRVKLKDVDEDVPGA 311 (451)
Q Consensus 234 i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR--~~~i~p~d~~rv~l~~~~~~~~~~ 311 (451)
+++.+|.+++++.. ....+.+||+.|..... ..+...+..++|+.||| |.||+|||++||+|.+ .+
T Consensus 9 ~~~~~f~~~~~~~~----~~~~i~~E~~~i~~~~~--~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~------~~ 76 (298)
T PHA02740 9 INGMDFINFINKPD----LLSCIIKEYRAIVPEHE--DEANKACAQAENKAKDENLALHITRLLHRRIKLFN------DE 76 (298)
T ss_pred cCHHHHHHHHhCCC----HHHHHHHHHHHHhccCc--cchhhhhhchhhhcccccccCCcCCccCceEEecC------CC
Confidence 55666666666543 34589999999976543 23456677889999996 5899999999999964 25
Q ss_pred CceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccce-eecCCC-CCceEEeeEEEEEe
Q psy8516 312 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCA-KYWPDD-HQSKTYGAVCVNNM 389 (451)
Q Consensus 312 ~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~-~YwP~~-~~~~~~~~~~v~~~ 389 (451)
+|||||||+|+..+++|||||+|+++|++|||+||||++|.+|||||...| .+|. +|||.+ +....+|+|+|++.
T Consensus 77 ~YINAnyVdG~~~~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e---~kc~~~YWP~~~~~~~~~g~f~V~~~ 153 (298)
T PHA02740 77 KVLDARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD---KKCFNQFWSLKEGCVITSDKFQIETL 153 (298)
T ss_pred CcEEEEEecCCCCCCcEEEecCCchhhHHHHHHHHHhcCCCEEEEcccccc---ccccccCCCCCCCCeEEECCEEEEEE
Confidence 799999999999999999999999999999999999999999999999876 4798 999975 44577999999999
Q ss_pred eeeeecCEEEEEEEEEeCCCCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhh
Q psy8516 390 YESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQ 445 (451)
Q Consensus 390 ~~~~~~~~~~~~l~v~~~~~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~ 445 (451)
+.....+|+.|.|.|++..+++|.|+||||++|||+|+|.++..||+|+..|++.+
T Consensus 154 ~~~~~~~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~ 209 (298)
T PHA02740 154 EIIIKPHFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLC 209 (298)
T ss_pred EEEecCCEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHH
Confidence 98889999999999987667899999999999999999999999999999998764
No 5
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.4e-48 Score=372.79 Aligned_cols=207 Identities=22% Similarity=0.401 Sum_probs=175.2
Q ss_pred cccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCC------
Q psy8516 233 RITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDE------ 306 (451)
Q Consensus 233 ~i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~------ 306 (451)
.+.+.+|.+++++.. ....+.+||+.|....... ++..+..+.|..||||.||+|||++||+|.+..+
T Consensus 8 ~~~~~~~~~~~~~~~----~~~~~~~e~~~i~~~~~~~--t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~ 81 (323)
T PHA02746 8 IFNAFDFFDKTNHAK----FCEFVLLEHAEVMDIPIRG--TTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDV 81 (323)
T ss_pred cCCHHHHHHHhcCCC----HHHHHHHHHHHHhcCCCCc--chhhccChhhccccCCCCCCCCcCCEEEecCCCCcccccc
Confidence 345555555444433 3456788999998865433 4566778999999999999999999999986321
Q ss_pred ------------CCCCCCceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCC
Q psy8516 307 ------------DVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPD 374 (451)
Q Consensus 307 ------------~~~~~~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~ 374 (451)
...++||||||||+|+...++|||||+|+++|++|||+||||++|.+|||||... .+..+|.+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~dYINAsyV~g~~~~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~-e~~~kc~~YWP~ 160 (323)
T PHA02746 82 GDSDGKKIEVTSEDNAENYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDID-DDDEKCFELWTK 160 (323)
T ss_pred ccccccccccccCCCCCCeEEEecccCCCCCCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccc-cCCccCCCCCCC
Confidence 2345899999999999988999999999999999999999999999999999975 467899999997
Q ss_pred C-CCceEEeeEEEEEeeeeeecCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhc
Q psy8516 375 D-HQSKTYGAVCVNNMYESVTTDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 446 (451)
Q Consensus 375 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~ 446 (451)
+ +....||.|.|++.+.....+|+.+.|.|++.. +.+|.|+||||++|||+|+|.++..+++|++.|++.++
T Consensus 161 ~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~ 234 (323)
T PHA02746 161 EEDSELAFGRFVAKILDIIEELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQA 234 (323)
T ss_pred CCCCCeEEcCEEEEEEEEEEcCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 6 456789999999998888889999999998865 67899999999999999999999999999999998764
No 6
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=372.31 Aligned_cols=204 Identities=29% Similarity=0.547 Sum_probs=173.8
Q ss_pred ccccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCC
Q psy8516 232 TRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 311 (451)
Q Consensus 232 t~i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~ 311 (451)
+.+.+.+|.+.+++.. ....+.+||+.|........+ ..+ ..|..||||.||+|||++||+|+... ..+
T Consensus 7 ~~~~~~~fl~~~~~~~----~~~~i~~E~~~i~~~~~~~t~--~~~--~~N~~kNR~~~v~~~d~sRV~L~~~~---~~~ 75 (320)
T PHA02738 7 RELKYAEFLALMEKSD----CEEVITREHQKVISEKVDGTF--NAE--KKNRKLNRYLDAVCFDHSRVILPAER---NRG 75 (320)
T ss_pred ccCCHHHHHHHHhCCC----HHHHHHHHHHHHhcCCCCcch--hHH--HHhhhhCCCCCcCCCcCCEEEeCCCC---CCC
Confidence 3455555555554332 345688899999764433322 222 34999999999999999999997532 347
Q ss_pred CceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCC-CCceEEeeEEEEEee
Q psy8516 312 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDD-HQSKTYGAVCVNNMY 390 (451)
Q Consensus 312 ~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~-~~~~~~~~~~v~~~~ 390 (451)
||||||||+|+..+++|||||+|+++|++|||+||||++|.+|||||+..|.+.++|.+|||.+ ++...+|+|+|++.+
T Consensus 76 dYINAsyVdg~~~~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~ 155 (320)
T PHA02738 76 DYINANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQ 155 (320)
T ss_pred CceEeEEecCCCCCceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEE
Confidence 9999999999998999999999999999999999999999999999999999999999999964 567889999999999
Q ss_pred eeeecCEEEEEEEEEeCCCCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhc
Q psy8516 391 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 446 (451)
Q Consensus 391 ~~~~~~~~~~~l~v~~~~~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~ 446 (451)
....++|+.|.|.|++..+.+|+|+||||++|||+|+|.++..|++|+..|++.++
T Consensus 156 ~~~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~ 211 (320)
T PHA02738 156 VETHPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQK 211 (320)
T ss_pred EEecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99899999999999987688999999999999999999999999999999998654
No 7
>KOG4228|consensus
Probab=100.00 E-value=3.7e-48 Score=397.83 Aligned_cols=209 Identities=39% Similarity=0.727 Sum_probs=192.9
Q ss_pred cccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCC
Q psy8516 233 RITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAE 312 (451)
Q Consensus 233 ~i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~ 312 (451)
++++.+|..+++.+++. ..-+|.+||+.|... .+++..+.+.+|+.||||.||++||++||+|...+ +.+++|
T Consensus 522 pI~v~dl~~~i~~~~~~--~~~~F~~Eyesl~~~----~~~~~~s~~~en~~KNRY~nilayD~sRV~L~~i~-Gd~~sD 594 (1087)
T KOG4228|consen 522 PIPVADLLEHIERRKAD--DGYGFKQEYESLPEG----QFTWEHSNKKENKQKNRYENILAYDHSRVILPPIE-GDPNSD 594 (1087)
T ss_pred CccHHHHHHHHHHhhcc--cccchHHHHhhcccc----CCccccCccccccccccCCcchhhhcceeeecccC-CCcccc
Confidence 68999999999998865 467899999999875 45677889999999999999999999999999876 456799
Q ss_pred ceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEeeee
Q psy8516 313 YINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYES 392 (451)
Q Consensus 313 yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~~~~ 392 (451)
|||||||+||..++.|||||||+++|+.||||||||+++.+|||++.+.|.++.||.+||| .++..||++.|++....
T Consensus 595 YINAnyIdGy~e~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r~kC~qYWP--~~t~~yGdi~V~~~~~~ 672 (1087)
T KOG4228|consen 595 YINANYIDGYKEPNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFSRVKCAQYWP--EGTETYGDIKVTLVQTK 672 (1087)
T ss_pred ceeeeeeecccccccceeccCCcccchHHHHHHheeccCCcEEEEecccccccccccccCC--CCccccccccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999 45889999999999999
Q ss_pred eecCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhccccC
Q psy8516 393 VTTDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIHAG 450 (451)
Q Consensus 393 ~~~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~~~~ 450 (451)
..++|.+|+|.|...+ ...|.|+||||++|||+|+|..+..+|.|++.|+..+....|
T Consensus 673 ~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aG 731 (1087)
T KOG4228|consen 673 PLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAG 731 (1087)
T ss_pred eeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCC
Confidence 9999999999998766 678999999999999999999999999999999999865544
No 8
>KOG0792|consensus
Probab=100.00 E-value=4.2e-46 Score=378.19 Aligned_cols=205 Identities=37% Similarity=0.675 Sum_probs=180.2
Q ss_pred chhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCCceeeE
Q psy8516 238 NIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINAN 317 (451)
Q Consensus 238 ~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs 317 (451)
.+.+.+..|.+.. ...++.-||+.|.+..+ ...+.+|..++|..||||.||+|||.|||.|.+...+ ...|||||
T Consensus 853 ~~dks~~~L~~~L-~~g~v~~efE~i~rkkp--~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~~--nagYINAS 927 (1144)
T KOG0792|consen 853 SLDKSCIILAQGL-EDGMVFTEFEQIYRKKP--GMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKDN--NAGYINAS 927 (1144)
T ss_pred chhhHHHHHHhhh-hcCchHHHHHHHhhhCC--CceeeeccccccccccccCCcCCCcCceeeeccCCCC--Ccccccce
Confidence 3445555555443 34557789999977653 3456789999999999999999999999999976543 45799999
Q ss_pred EeecC--CCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCC-CCceEEeeEEEEEeeeeee
Q psy8516 318 YIQSE--DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDD-HQSKTYGAVCVNNMYESVT 394 (451)
Q Consensus 318 ~v~~~--~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~-~~~~~~~~~~v~~~~~~~~ 394 (451)
+|..+ +..+.|||||||++.|+.|||+||||+++.+|||||...|.|+.||.+|||.. .+++.||.|.|+|..+...
T Consensus 928 ~i~ipvgg~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t 1007 (1144)
T KOG0792|consen 928 HIEIPVGGIENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQT 1007 (1144)
T ss_pred eeEeeecceeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEeccc
Confidence 99987 35689999999999999999999999999999999999999999999999977 5678899999999999999
Q ss_pred cCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhcc
Q psy8516 395 TDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDI 447 (451)
Q Consensus 395 ~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~ 447 (451)
..|+.|.++|.+.. ++.|+|+|+||++|||||+|+++..||+|+++|+..+..
T Consensus 1008 ~~y~tr~m~l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~ 1061 (1144)
T KOG0792|consen 1008 TCYVTREMTLKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRG 1061 (1144)
T ss_pred ccEEEEeEEEeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhcc
Confidence 99999999999976 889999999999999999999999999999999998865
No 9
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=100.00 E-value=3.2e-45 Score=343.10 Aligned_cols=189 Identities=44% Similarity=0.826 Sum_probs=171.4
Q ss_pred chHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCCceeeEEeecCCCCceEEEeCCCC
Q psy8516 256 FWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCL 335 (451)
Q Consensus 256 ~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs~v~~~~~~~~~I~tQ~P~ 335 (451)
+.+||+.|...... ..++..+..++|..||||+||+|+|++||+|.+.++ .++||||||||+|+..+++||+||+|+
T Consensus 2 ~~~e~~~i~~~~~~-~~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~~--~~~~YInAs~v~~~~~~~~fI~tQ~P~ 78 (258)
T smart00194 2 LEEEFEKLDRLKPD-DESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPPG--EGSDYINASYIDGPNGPKAYIATQGPL 78 (258)
T ss_pred hHHHHHHhhccCCC-CccccccCCccccccCCCCCCCCCCCCEeEccCCCC--CCCCceeeeeEecCCCccceEEeCCCc
Confidence 67899999876433 234567889999999999999999999999986432 458999999999998889999999999
Q ss_pred cccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEeeeeeecCEEEEEEEEEeCC-CCCEEE
Q psy8516 336 PSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSKGS-ESPRKI 414 (451)
Q Consensus 336 ~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~v~~~~-~~~~~v 414 (451)
++|++|||+|||+++|.+|||||+..|.+..+|.+|||.+.+...||.|+|++.+.....+++.|+|.|+..+ +.++.|
T Consensus 79 ~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~v~~~~~~~~~~v 158 (258)
T smart00194 79 PSTVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSETRTV 158 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCCCcceECCEEEEEEEEEecCCEEEEEEEEEECCCCCcEEE
Confidence 9999999999999999999999999999999999999987677889999999999998899999999999876 689999
Q ss_pred EEEeeCCCCCCCCCCChHHHHHHHHHHHhhhcc
Q psy8516 415 YHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDI 447 (451)
Q Consensus 415 ~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~ 447 (451)
+||||++|||+++|.++..+++|++.|+..+..
T Consensus 159 ~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~ 191 (258)
T smart00194 159 THYHYTNWPDHGVPESPKSILDLVRAVRKSQST 191 (258)
T ss_pred EEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998653
No 10
>KOG4228|consensus
Probab=100.00 E-value=8.2e-45 Score=373.29 Aligned_cols=258 Identities=31% Similarity=0.586 Sum_probs=228.8
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEeccc-----------------------cccccccccc
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP-----------------------FNATRITVSN 238 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p-----------------------~~~t~i~~~~ 238 (451)
-++|||++| +++++.|..++.++++......+++.+.+..|+.. ||++.+++..
T Consensus 732 PiVVHCSAG---vGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T~i~~~~ 808 (1087)
T KOG4228|consen 732 PIVVHCSAG---VGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGDTEVPAST 808 (1087)
T ss_pred CEEEECCCC---CCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCCccccHHH
Confidence 468999999 88999999999999999999999999988877743 7999999999
Q ss_pred hhhhHHHhhhccC--CCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCCceee
Q psy8516 239 IHDRVTELQKENS--SKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINA 316 (451)
Q Consensus 239 l~~~v~~l~~~~~--~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinA 316 (451)
|..+++.|.+..+ +++++++||+.|....+..... .+|..++|+.|||+.+|+|||++||.|.+..+. ++|||||
T Consensus 809 ~~~~~~~l~~~~p~~~~t~le~EF~~L~~~~~~~~~~-~~~~l~~N~~KNR~~~i~P~d~~rv~L~~~~G~--~sdYINA 885 (1087)
T KOG4228|consen 809 LAPYSQKLKRIDPPENKTGLEEEFKTLNSCKPRTRMM-ICGNLPENKSKNRQVNILPYDRNRVILIPTHGE--SSDYINA 885 (1087)
T ss_pred HHHHHHHhccCCCCCCCcchHHHHHHHhhccccchhh-hccccchhcccccccccCCchhcccceeccCCC--cccccch
Confidence 9999999998666 7889999999998865443222 238999999999999999999999999987654 6899999
Q ss_pred EEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEeeeeeecC
Q psy8516 317 NYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTD 396 (451)
Q Consensus 317 s~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~~~~~~~~ 396 (451)
|||+||..+..|||||+|+.+|++|||||||+++|.+||||+...+. ++|.+|||.+ +...||.+.|+.++......
T Consensus 886 s~idgy~~~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL~~l~~~--~~C~qyw~~~-g~~~yg~i~Ve~~~~~~~~~ 962 (1087)
T KOG4228|consen 886 SFIDGYRQPKAFIVTQGPLAETVEDFWRMIWDQNVTSIVMLTELKHP--EKCPQYWPPE-GSQRYGPIEVEDMNEHINPQ 962 (1087)
T ss_pred hhhcccCCcceEEEecCCcccchHHHHHHhhccceeEEEEecccCcc--cccccccCCc-CceecCcEEEEecccccchh
Confidence 99999999999999999999999999999999999999999998777 8999999985 47889999999999999999
Q ss_pred EEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCC-CChHHHHHHHHHHHhhhccc
Q psy8516 397 YILREFLVSKGS-ESPRKIYHYHFQAWPDHGVP-SDPGCVLNFLYEVNTRQDIH 448 (451)
Q Consensus 397 ~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P-~~~~~~l~~~~~v~~~~~~~ 448 (451)
++.|.|.|++.. +.+|+|.||||++||..++| .+...+..++.+++++++..
T Consensus 963 ~t~r~f~i~n~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~ 1016 (1087)
T KOG4228|consen 963 YTAREFGVTNEREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLG 1016 (1087)
T ss_pred hhhhhheeeeccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhc
Confidence 999999999976 78999999999999988776 55566777777777777654
No 11
>KOG0791|consensus
Probab=100.00 E-value=3e-43 Score=322.76 Aligned_cols=210 Identities=39% Similarity=0.713 Sum_probs=188.7
Q ss_pred cccccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCC
Q psy8516 231 ATRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPG 310 (451)
Q Consensus 231 ~t~i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~ 310 (451)
...+.++++..++..+++. +..+|.+||++|....- .-++..|..+.|..||||.||+|||++||+|.+.+ ..++
T Consensus 75 s~~i~len~e~~~~~~~~d--sn~~f~eey~~lk~~g~--~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~-e~~~ 149 (374)
T KOG0791|consen 75 TNPVSLENFELHVKKMSAD--SNYKFSEEYNELKLVGL--DQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVN-EEEG 149 (374)
T ss_pred CCceeeccchhhhhhcccc--cchhhHHHHhhhhhhcc--cchhhhhhcCCCCCcCCcCCCCCcccccceecccc-ccch
Confidence 3378889999988887765 67889999999876432 22455688999999999999999999999999764 4577
Q ss_pred CCceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEee
Q psy8516 311 AEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMY 390 (451)
Q Consensus 311 ~~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~~ 390 (451)
+||||||||.|+...+.|||||+|+++|.++||+||||+++.+|||||...|.++.+|..|||.+.....||+++|+.+.
T Consensus 150 ~DYinA~~~Pg~~s~~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~~~~~gdi~V~~v~ 229 (374)
T KOG0791|consen 150 SDYINASYIPGYNSPREFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEVPVAYGDITVTMVS 229 (374)
T ss_pred hhhhhhhhcCCCCCcceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeecccccchhhhhhcccccccceeccEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999988777889999999999
Q ss_pred eeeecCEEEEEEEEEeCCCCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhc
Q psy8516 391 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 446 (451)
Q Consensus 391 ~~~~~~~~~~~l~v~~~~~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~ 446 (451)
+....++++|.|.+. ..+++|.+.||||+.|||+|+|..+..++.|++.++.+-.
T Consensus 230 e~~~~~w~ir~~~l~-~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~ 284 (374)
T KOG0791|consen 230 EESLDEWTIREFRLN-YAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLD 284 (374)
T ss_pred hhhcCCceEEEEeee-cccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcc
Confidence 999999999999998 3378999999999999999999999999999999998643
No 12
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=100.00 E-value=1.8e-40 Score=306.06 Aligned_cols=161 Identities=48% Similarity=0.921 Sum_probs=149.9
Q ss_pred CCCCCCCCCCCCCCceEecCCCCCCCCCCceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeecccccc
Q psy8516 284 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 363 (451)
Q Consensus 284 ~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~ 363 (451)
+|||++|++|||++||+|.... ...++|||||||+|+..+++||+||+|+.+|++|||+|||+++|.+||||++..|.
T Consensus 1 ~knR~~~~~~~d~~rV~l~~~~--~~~~~yinA~~v~~~~~~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~ 78 (231)
T cd00047 1 KKNRYKDILPYDHTRVKLKPDD--DEGSDYINASYIDGYNPPKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEK 78 (231)
T ss_pred CCCCCCCCCCCCCCEEEccCCC--CCCCCcEEeeeEecCCCCcceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccC
Confidence 5899999999999999998642 24578999999999998899999999999999999999999999999999999999
Q ss_pred CcccceeecCCCCCceEEeeEEEEEeeeeeecCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHH
Q psy8516 364 GKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVN 442 (451)
Q Consensus 364 ~~~~c~~YwP~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~ 442 (451)
+.++|.+|||.+.+...||.|+|++.+.....+++.|+|.|+..+ +.++.|+||||++|||+++|+++..+++|++.|+
T Consensus 79 ~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~i~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~ 158 (231)
T cd00047 79 GREKCAQYWPEEEGSLTYGDITVTLVSEEKLDDYTVRTLKLSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVR 158 (231)
T ss_pred CCccCccCCCCCCCCeEecCEEEEEEEEEEcCCEEEEEEEEEECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHH
Confidence 999999999976567889999999999988899999999999877 8899999999999999999999999999999999
Q ss_pred hhhc
Q psy8516 443 TRQD 446 (451)
Q Consensus 443 ~~~~ 446 (451)
+.++
T Consensus 159 ~~~~ 162 (231)
T cd00047 159 KSQQ 162 (231)
T ss_pred HHhc
Confidence 8864
No 13
>KOG0793|consensus
Probab=100.00 E-value=7.9e-42 Score=331.57 Aligned_cols=193 Identities=38% Similarity=0.654 Sum_probs=173.0
Q ss_pred CCccchHHHHhhhcccccccccccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCCceeeEEeecCC-CCceEEE
Q psy8516 252 SKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSED-GGKSYIA 330 (451)
Q Consensus 252 ~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs~v~~~~-~~~~~I~ 330 (451)
++..+++||+.|....... .++..+..+.|..|||...++||||+||.|+.. .+...+||||||+|...+ ....|||
T Consensus 730 nk~rlekeWealc~YqaEp-n~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~~-~s~s~~dYiNAS~I~DhDPR~paYIA 807 (1004)
T KOG0793|consen 730 NKNRLEKEWEALCAYQAEP-NSRFVAQREENAPKNRSLAVLPYDHSRVLLKAE-NSHSHSDYINASPIMDHDPRNPAYIA 807 (1004)
T ss_pred CchHHHHHHHHHHHhhcCc-chhhhhcccccccccCCCCccccccceeeeccc-cCccccccccccccccCCCCccceee
Confidence 4667999999997653221 245678899999999999999999999999864 356779999999998764 4578999
Q ss_pred eCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEeeeee-ecCEEEEEEEEEeCC-
Q psy8516 331 TQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESV-TTDYILREFLVSKGS- 408 (451)
Q Consensus 331 tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~v~~~~- 408 (451)
||+|++.|+.|||+||||++|.+|||||++.|.|...|..|||.+| +..|+-|.|.++++.+ ..+|.+|.|.+++.+
T Consensus 808 tQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeG-selyhiyEV~LVSEHIWceDfLVRSFYLKNlqt 886 (1004)
T KOG0793|consen 808 TQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEG-SELYHIYEVNLVSEHIWCEDFLVRSFYLKNLQT 886 (1004)
T ss_pred ccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCC-cceeeeEEeeeehhhhhhhhHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999986 6779999999999874 789999999999877
Q ss_pred CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhcc
Q psy8516 409 ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDI 447 (451)
Q Consensus 409 ~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~ 447 (451)
+++|||++|||.+||+.|+|.+.+++|+|-++|+++.++
T Consensus 887 seTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRG 925 (1004)
T KOG0793|consen 887 SETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRG 925 (1004)
T ss_pred ccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccC
Confidence 889999999999999999999999999999999999875
No 14
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=100.00 E-value=2.5e-37 Score=286.33 Aligned_cols=161 Identities=39% Similarity=0.814 Sum_probs=143.5
Q ss_pred CCCCCCCCCCCCCCCCceEecCCCCCCCCCCceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEEeecccc
Q psy8516 282 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEM 361 (451)
Q Consensus 282 n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~ 361 (451)
|+.|||+.+++|+|++||+|.+.. ..++|||||||+++...+.||+||+|+++|++|||+|||+++|.+||||++..
T Consensus 1 n~~knR~~~~~~~d~~rv~l~~~~---~~~~yi~A~~v~~~~~~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~ 77 (235)
T PF00102_consen 1 NREKNRSPDILPYDDSRVKLNPSP---GDSDYINASYVDGYKNGKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFD 77 (235)
T ss_dssp GGGGSSSTTS-BBTTTEEETTTTT---TSTTEESEEEEEESSSTEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSE
T ss_pred CCccCCCCCCCcCcceEEEecCCC---Cccchhhhhhhccccchhhheeecccccccccceehheeeccccceecccccc
Confidence 789999999999999999995432 22569999999999889999999999999999999999999999999999999
Q ss_pred ccCcccceeecC-CCCCceEEeeEEEEEe-eee-eecCEEEEEEEEEeCCCC--CEEEEEEeeCCCCCCCCCCChHHHHH
Q psy8516 362 ERGKNKCAKYWP-DDHQSKTYGAVCVNNM-YES-VTTDYILREFLVSKGSES--PRKIYHYHFQAWPDHGVPSDPGCVLN 436 (451)
Q Consensus 362 e~~~~~c~~YwP-~~~~~~~~~~~~v~~~-~~~-~~~~~~~~~l~v~~~~~~--~~~v~~~~~~~Wp~~~~P~~~~~~l~ 436 (451)
|.+...|.+||| ..++...+|.|+|++. +.. ....++.|.|.|++.... +++|.||||..||++++|.++..+++
T Consensus 78 e~~~~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~ 157 (235)
T PF00102_consen 78 ESGDEKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLD 157 (235)
T ss_dssp ETTEESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccchhhh
Confidence 999999999999 5567888999999999 655 788999999999997743 69999999999999999999999999
Q ss_pred HHHHHHhhh
Q psy8516 437 FLYEVNTRQ 445 (451)
Q Consensus 437 ~~~~v~~~~ 445 (451)
|++.|++..
T Consensus 158 ~~~~v~~~~ 166 (235)
T PF00102_consen 158 FIRKVNKSK 166 (235)
T ss_dssp HHHHHHHHH
T ss_pred hhhhccccc
Confidence 999999987
No 15
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-37 Score=268.95 Aligned_cols=166 Identities=34% Similarity=0.600 Sum_probs=141.0
Q ss_pred cccccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCCceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccc-
Q psy8516 273 TRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENV- 351 (451)
Q Consensus 273 ~~~~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~- 351 (451)
++.....+.|..||||.||+||++|||.|...+ ...||||||||+... ..|||||||+++|+.|||.|||++..
T Consensus 44 s~~~sls~~~~~rNRYsnIvPYe~tRV~Lk~~k---~~~DYINAS~ik~~~--~~yIAtQgP~~~t~ddFW~mvw~n~~~ 118 (302)
T COG5599 44 SDDTSLSSTNYARNRYSNIVPYEHTRVHLKYGK---SINDYINASYIKTPR--GKYIATQGPKPETIDDFWKMVWHNVPN 118 (302)
T ss_pred ccccccCccccccccccccccccCceeeccCCC---chhhcccceeeecCC--CceEEecCCCCchHHHHHHHHHhcCCC
Confidence 334567788999999999999999999998652 347999999999976 35999999999999999999999988
Q ss_pred -eEEEeeccccccCcccceeecCCC-CCceEEeeEEEEEeeee--eecCEEEEEEEEEeCCCCCEEEEEEeeCCCCCCCC
Q psy8516 352 -RVIVMTTKEMERGKNKCAKYWPDD-HQSKTYGAVCVNNMYES--VTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGV 427 (451)
Q Consensus 352 -~~Iv~l~~~~e~~~~~c~~YwP~~-~~~~~~~~~~v~~~~~~--~~~~~~~~~l~v~~~~~~~~~v~~~~~~~Wp~~~~ 427 (451)
.+||||+++.|.++++|.+|||.. +++..+|...+..++.+ ....+..+.++++..++..+.|.||+|.+|+|.+.
T Consensus 119 ~gvIVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~ 198 (302)
T COG5599 119 NGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNV 198 (302)
T ss_pred ceEEEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEecccccccceeeeeecccccCCCCccEEEEEEecCccccCC
Confidence 999999999999999999999943 45677897777666544 34456788899988778999999999999999999
Q ss_pred CCChHHHHHHHHHHHhh
Q psy8516 428 PSDPGCVLNFLYEVNTR 444 (451)
Q Consensus 428 P~~~~~~l~~~~~v~~~ 444 (451)
| +...+.++++.+...
T Consensus 199 p-~i~sl~~~~~sl~~s 214 (302)
T COG5599 199 P-DIRSLTEVIHSLNDS 214 (302)
T ss_pred c-CHHHHHHHHHHhhcC
Confidence 9 777777777776654
No 16
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=100.00 E-value=1.3e-34 Score=278.70 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=149.7
Q ss_pred ccccchhhhHHHhhhccCCCccchHHHHhhhcccccccccccccccccCCCCCCC--CCCCCCCCCceEecCCCCCCCCC
Q psy8516 234 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRY--KNILPFDHTRVKLKDVDEDVPGA 311 (451)
Q Consensus 234 i~~~~l~~~v~~l~~~~~~~~~~~~ef~~l~~~~~~~~~~~~~~~~~~n~~knR~--~~i~p~d~~rv~l~~~~~~~~~~ 311 (451)
.+..++.....+++..+.....+..|.+.+.--++-. -+ +.-.....-|| ++|+|+|+|||+|++ +
T Consensus 253 as~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ag~p~~-~~----~~~~~~~~~~~~~~~I~~~~~TrV~ls~-------g 320 (535)
T PRK15375 253 ASTHELTQAVKKIHVIAKELKNVTAELEKIEAGAPMP-QT----MSGPTLGLARFAVSSIPINQQTQVKLSD-------G 320 (535)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cc----cCCccchhhHHHhcccCccccceEEcCC-------C
Confidence 4445566666666655444445556655553322110 00 01111222344 699999999999963 6
Q ss_pred CceeeEEeecCCCCceEEEeCCCCc--ccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEe
Q psy8516 312 EYINANYIQSEDGGKSYIATQGCLP--STMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNM 389 (451)
Q Consensus 312 ~yinAs~v~~~~~~~~~I~tQ~P~~--~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~ 389 (451)
+|||||||+ +..++.+|++|.|+. +|++|||+||||++|.+|||||...|.+..+|.+||+ ++..||+|+|++.
T Consensus 321 ~yI~ANyI~-~~~k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC~pYW~---~s~tYGdItVts~ 396 (535)
T PRK15375 321 MPVPVNTLT-FDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFR---GSYTFGEVHTNSQ 396 (535)
T ss_pred Cccccceee-ecCccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCcccccCccCC---CcceeccEEEEEE
Confidence 799999999 888889999999975 8999999999999999999999999999999999996 4677999999988
Q ss_pred eeeee-cCEEEEEEEEEeCC-CCCEEEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhc
Q psy8516 390 YESVT-TDYILREFLVSKGS-ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 446 (451)
Q Consensus 390 ~~~~~-~~~~~~~l~v~~~~-~~~~~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~ 446 (451)
++... .++++|.+.+.... ...++|.||||++|||||+|+++..+++|++.|+..++
T Consensus 397 seesls~g~iIR~f~L~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q 455 (535)
T PRK15375 397 KVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQ 455 (535)
T ss_pred EEEeccCCceEEEEEEEEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhh
Confidence 87654 46777777654443 33458999999999999999998899999999998754
No 17
>KOG0789|consensus
Probab=99.97 E-value=7.8e-31 Score=263.30 Aligned_cols=161 Identities=32% Similarity=0.546 Sum_probs=128.2
Q ss_pred ccccccCCCCCCCCCCCCCCCCceEecCCCCCCCCCCceeeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEE
Q psy8516 276 EGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIV 355 (451)
Q Consensus 276 ~~~~~~n~~knR~~~i~p~d~~rv~l~~~~~~~~~~~yinAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv 355 (451)
......|..||||.||.|+|++||+|.... ..||||||||+++...+.||+||+|++.|.+|||+|||++++.+||
T Consensus 121 ~~~~~~~~~kNr~~dv~~~d~~rV~l~~~~----~~dyI~A~~v~~~~~~~~~I~tQ~Pl~~t~~dFW~mv~~~k~~~Iv 196 (415)
T KOG0789|consen 121 CDAFLKNMDKNRYSDVQCLDHTRVKLKPPQ----DKDYIHASKIYFPKGPRTAILTQAPLSKTTEDFWRMVFEEKVESVV 196 (415)
T ss_pred hhhhhccccccccCCcCcccCCeeecCCCC----CcccchhhccCCcCCCcCceecCCCCcccHHHHHHHHHHcCCCEEE
Confidence 456778899999999999999999997532 3789999999998633899999999999999999999999999999
Q ss_pred eeccccccCcccceeecCCCC-CceEEeeEEEEEee---eeee---cCEEEEEEEEEeCC--CCCEEEEEEeeCCCCCCC
Q psy8516 356 MTTKEMERGKNKCAKYWPDDH-QSKTYGAVCVNNMY---ESVT---TDYILREFLVSKGS--ESPRKIYHYHFQAWPDHG 426 (451)
Q Consensus 356 ~l~~~~e~~~~~c~~YwP~~~-~~~~~~~~~v~~~~---~~~~---~~~~~~~l~v~~~~--~~~~~v~~~~~~~Wp~~~ 426 (451)
|||+..|.+..+|.+|||.+. +...|+.+...+.. .... ..+....+.+.... ..++.|.||||++|||+|
T Consensus 197 ml~~~~E~~~~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~WPd~~ 276 (415)
T KOG0789|consen 197 LLCSDEELGAAECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVGLLLLVLPEGLEISSSVVHYHYINWPDHG 276 (415)
T ss_pred EecchhhccHHHHhhcCcccCCCeeeecccceeEEEeeeeecccccccceeeEEEeecCCCccccceEEEEeeCCCcccc
Confidence 999999999999999999765 34556666443332 2221 23333332222222 334799999999999999
Q ss_pred CCCChHHHHHHHHH
Q psy8516 427 VPSDPGCVLNFLYE 440 (451)
Q Consensus 427 ~P~~~~~~l~~~~~ 440 (451)
+|.+..+++.+++.
T Consensus 277 ~p~~~~~~l~~~~~ 290 (415)
T KOG0789|consen 277 APDSVKSILPLLRQ 290 (415)
T ss_pred CCcchHHHHHHHHh
Confidence 99999999999974
No 18
>KOG1264|consensus
Probab=99.97 E-value=8.8e-30 Score=251.41 Aligned_cols=197 Identities=32% Similarity=0.632 Sum_probs=171.1
Q ss_pred CCCccCCCCC-HHHHHHHHhcC-----CCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEee--CC--eEEecCCcccC
Q psy8516 3 SRRWFHPSIS-GVEAEVLLLER-----GYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNT--GD--CYDLYGGEKFA 72 (451)
Q Consensus 3 ~~~wy~g~is-r~~Ae~lL~~~-----~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~--~~--~~~~~~~~~f~ 72 (451)
.+.||||.+- |.+|++||... +++|+||||+|.+..|+|+||+...|+|+|.||... +| +|++.++..|.
T Consensus 533 ~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~vfd 612 (1267)
T KOG1264|consen 533 GEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLVFD 612 (1267)
T ss_pred chhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchhHH
Confidence 4689999999 99999999876 269999999999999999999999999999999753 33 79999999999
Q ss_pred CHHHHHHHHHhccccccccccceeeecCCCCCCCCC-ccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHh
Q psy8516 73 TLSELVQFYMENQGQLKKRNQEVIELKYPLSCADPT-TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQ 151 (451)
Q Consensus 73 sl~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~-~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~ 151 (451)
||.+||.||+.+. |.. ....+.|+.|++.+.|+ .++|||...++.+||.+|...+
T Consensus 613 slY~LI~~Y~~~~--Lr~-aeF~m~LtePvPqp~~He~k~W~~as~treqAE~mL~rvp--------------------- 668 (1267)
T KOG1264|consen 613 SLYALIQHYRETH--LRC-AEFEMRLTEPVPQPNPHESKPWYHASLTREQAEDMLMRVP--------------------- 668 (1267)
T ss_pred HHHHHHHHHHhcc--ccc-cceEEEecCCCCCCCcccCCccccccccHHHHHHHHhhCc---------------------
Confidence 9999999999987 322 23467899999988887 7799999999999999999877
Q ss_pred cCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEecccccc
Q psy8516 152 KGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNA 231 (451)
Q Consensus 152 ~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~~ 231 (451)
.||+|||| |......|++|++.+++++|++|.+++..|.+ ++..|.+|.+||.||..+++.- -+.|+.|+..
T Consensus 669 --~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~rdGr~fvl-~t~~FesLv~lv~yY~k~~lyR----~mkLr~PVne 740 (1267)
T KOG1264|consen 669 --RDGAFLIR-KREGSNSYAISFRARGKIKHCRINRDGRHFVL-GTSAFESLVELVSYYEKHPLYR----KMKLRYPVNE 740 (1267)
T ss_pred --cCcceEEE-eccCCceEEEEEEEcCcEeEEEEccCceEEEe-ccHHHHHHHHHHHHHhcChhhh----cccccCcCCH
Confidence 59999999 55677889999999999999999998887766 5677999999999999998754 2677788643
No 19
>KOG4637|consensus
Probab=99.96 E-value=4.8e-30 Score=233.12 Aligned_cols=224 Identities=29% Similarity=0.486 Sum_probs=166.7
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHH
Q psy8516 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQF 80 (451)
Q Consensus 1 l~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~ 80 (451)
|+..+||||+|||+++.+.|.+.+ ||+||||+.++-+|+|+|+++.+|..+-++|.+.+|+|.|.+...|.|+.+||+|
T Consensus 20 L~~a~WYWgdisReev~~~L~d~P-DGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn~ 98 (464)
T KOG4637|consen 20 LQDAEWYWGDISREEVNKKLRDQP-DGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELINH 98 (464)
T ss_pred hhhccccccccCHHHHHHHhcCCC-CCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHHH
Confidence 467899999999999999999999 9999999987779999999999999999999999999988888889999999999
Q ss_pred HHhccccccccc-cceeeecCCCCCCCC----------------------------------------------------
Q psy8516 81 YMENQGQLKKRN-QEVIELKYPLSCADP---------------------------------------------------- 107 (451)
Q Consensus 81 y~~~~~~l~~~~-~~~i~L~~Pv~~~~~---------------------------------------------------- 107 (451)
|+..+ |..-. ...+.|.+|+++...
T Consensus 99 yr~~S--L~~yN~~LDvrLlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~ 176 (464)
T KOG4637|consen 99 YRNES--LAQYNPKLDVRLLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAI 176 (464)
T ss_pred HhhhH--HHhhCcccceeeechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 43332 334788888875430
Q ss_pred ----------------------------Ccc-------------------------------------------------
Q psy8516 108 ----------------------------TTE------------------------------------------------- 110 (451)
Q Consensus 108 ----------------------------~~~------------------------------------------------- 110 (451)
.++
T Consensus 177 ~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~ 256 (464)
T KOG4637|consen 177 EAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRSN 256 (464)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 000
Q ss_pred ---------------------------------ccccCCcchHHHHHHHHH---cCCCCCccccc---------------
Q psy8516 111 ---------------------------------RWFHGQLSGKEAEQLILQ---KGKNGSFLVRE--------------- 139 (451)
Q Consensus 111 ---------------------------------~w~~~~~~~~~ae~~l~~---~~~~g~fg~~~--------------- 139 (451)
.|..+.-.++..-.++.. .....+|.++.
T Consensus 257 ~enr~~e~m~l~k~~nslkp~l~~lr~~~d~y~~~l~~~~~~~k~l~~~l~~~~~~t~~qy~l~et~~~~ph~~e~~w~~ 336 (464)
T KOG4637|consen 257 SENRLCELMELDKAMNSLKPDLIQLRKIRDQYLVWLMIKGVRQKVLNLWLGMENEWTDAQYLLCETDENLPHNDEKTWRV 336 (464)
T ss_pred hhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCccHHHHHHHHhhhhcCCHHHHHHhcccccCcchhhhHhHH
Confidence 010000000000000000 11111222222
Q ss_pred --CchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCCeEEecC-CcccccHHHHHHhhhcCCcc
Q psy8516 140 --SQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGG-GEQFDSLTQLIEHYKRNPMV 216 (451)
Q Consensus 140 --~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~F~sl~~Li~~y~~~~lv 216 (451)
..+.+|+.. ...++||+||||+| +..|+|+|||..++.|+|++|..+..+|.+.. ...+.||.+||.||++.+++
T Consensus 337 ~~a~r~kAe~l-lrg~~dGtFLIR~s-s~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SLe 414 (464)
T KOG4637|consen 337 RDANRDKAEEL-LRGKPDGTFLIRES-SKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSLE 414 (464)
T ss_pred hhhhHHHHHHH-hcCCCCCeEEEeec-cCCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhHH
Confidence 224444444 44458999999996 56789999999999999999999888887765 56799999999999999999
Q ss_pred ccccee-EEecccc
Q psy8516 217 ETSGTV-VHLKQPF 229 (451)
Q Consensus 217 ~~~g~~-~~L~~p~ 229 (451)
++.+.+ +.|+.|+
T Consensus 415 ~HnDal~ttLr~Pv 428 (464)
T KOG4637|consen 415 QHNDALTTTLRYPV 428 (464)
T ss_pred hhccccccccccce
Confidence 998776 8888886
No 20
>KOG4278|consensus
Probab=99.86 E-value=2.9e-23 Score=202.21 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=151.9
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEee-CCeEEecCCcccCCHHHHHH
Q psy8516 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNT-GDCYDLYGGEKFATLSELVQ 79 (451)
Q Consensus 1 l~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~-~~~~~~~~~~~f~sl~~Lv~ 79 (451)
|+.+.||||.+||.+||.+|...- +|+||||+|++.+|+|.+|+++.|+|.||||... +++.|+.....|.+|.+||.
T Consensus 149 LeKhsWYHGpvSRsaaEy~LsSgI-nGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVH 227 (1157)
T KOG4278|consen 149 LEKHSWYHGPVSRSAAEYILSSGI-NGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVH 227 (1157)
T ss_pred hhhcccccCccccchhhhhhhcCc-ccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHh
Confidence 567899999999999999997766 9999999999999999999999999999999874 56788888889999999999
Q ss_pred HHHhccccccccccceeeecCCCCCCCCCc---cccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHH-HHHhc-CC
Q psy8516 80 FYMENQGQLKKRNQEVIELKYPLSCADPTT---ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQ-LILQK-GK 154 (451)
Q Consensus 80 ~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~~---~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~-~l~~~-~~ 154 (451)
||+...++| ++.|.+|.++.+..+ ....++.|+.+..++++..++|.|+||+|+.|.|.... .++.+ .+
T Consensus 228 HHStvADGL------ittLhYPApK~nKptvygvSPn~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLK 301 (1157)
T KOG4278|consen 228 HHSTVADGL------ITTLHYPAPKKNKPTVYGVSPNADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK 301 (1157)
T ss_pred hccccccce------eEeeeccCccCCCCceeeecCCcchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhh
Confidence 999998887 556899988766443 23456899999999999999999999999999998765 23333 12
Q ss_pred CceEEEecCCCCCCCeEEEEEeCCeeeeEEE-----EEeCC--eEEecCCcccccHHHHHHhhhcCCcccc
Q psy8516 155 NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-----RCQAE--KYDVGGGEQFDSLTQLIEHYKRNPMVET 218 (451)
Q Consensus 155 ~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I-----~~~~~--~~~~~~~~~F~sl~~Li~~y~~~~lv~~ 218 (451)
..+ +.-..|......++.++|-.+ .|+.. .|.+. .|.+-..|++|.+.....++
T Consensus 302 EDt-------MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiT---EfM~yGNLLdYLRecnr~ev 362 (1157)
T KOG4278|consen 302 EDT-------MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIIT---EFMCYGNLLDYLRECNRSEV 362 (1157)
T ss_pred hcc-------hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEE---ecccCccHHHHHHHhchhhc
Confidence 221 222224433344556666533 35433 45554 46666666677655554443
No 21
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.84 E-value=2e-20 Score=143.58 Aligned_cols=81 Identities=49% Similarity=0.831 Sum_probs=74.8
Q ss_pred CCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeC-CeEEecCCcccCCHHHHHHHHH
Q psy8516 4 RRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTG-DCYDLYGGEKFATLSELVQFYM 82 (451)
Q Consensus 4 ~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~-~~~~~~~~~~f~sl~~Lv~~y~ 82 (451)
++||||.|+|++||++|.+.+ +|+||||.|.+.++.|+||++.++.++||+|...+ +.|++.+...|+||.+||+||+
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~-~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~ 79 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEG-DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQ 79 (84)
T ss_pred CCeecccCCHHHHHHHHhcCC-CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHh
Confidence 589999999999999999987 99999999988789999999999999999998876 6788877788999999999998
Q ss_pred hcc
Q psy8516 83 ENQ 85 (451)
Q Consensus 83 ~~~ 85 (451)
.++
T Consensus 80 ~~~ 82 (84)
T smart00252 80 KNS 82 (84)
T ss_pred hCC
Confidence 765
No 22
>KOG0197|consensus
Probab=99.83 E-value=1.1e-20 Score=182.98 Aligned_cols=197 Identities=27% Similarity=0.369 Sum_probs=146.1
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCC-CCCeEEEeecCCCCCceEEEEEECC------eEEEEEEEeeC-CeEE--ecCCcc
Q psy8516 1 MSSRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLNG------EVTHIKIQNTG-DCYD--LYGGEK 70 (451)
Q Consensus 1 l~~~~wy~g~isr~~Ae~lL~~~~-~~G~flvR~s~~~~~~~~ls~~~~~------~~~h~~I~~~~-~~~~--~~~~~~ 70 (451)
|+..+||+|.|||++||+.|.... ..|+||||+|++..|.|+|||+... .++||+|...+ ++++ +.....
T Consensus 78 l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~ 157 (468)
T KOG0197|consen 78 LSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDEREL 157 (468)
T ss_pred cccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHh
Confidence 567899999999999997666555 5699999999999999999999765 89999998754 4566 777778
Q ss_pred cCCHHHHHHHHHhccccccccccceeeecCCCCCC---CCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHH
Q psy8516 71 FATLSELVQFYMENQGQLKKRNQEVIELKYPLSCA---DPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQ 147 (451)
Q Consensus 71 f~sl~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~---~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~ 147 (451)
|.+|.+||+||+.++.+++.. |..|+... .|.+.....+.|..+..+..|.+++|+|+||.|++|.|+...
T Consensus 158 F~~l~~lv~~~~~~~~gl~~~------l~~p~~~~~~~~p~~~~~~~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~ 231 (468)
T KOG0197|consen 158 FSSLQQLVNYYSKNADGLCTR------LRDPCSKQGHTKPQTPDLARDPWEIPREELKLIRELGSGQFGEVWLGKWNGST 231 (468)
T ss_pred hhhHHHHHhhhhccCcchhhc------ccCchhccCCCCCCCCccccCCeeecHHHHHHHHHhcCCccceEEEEEEcCCC
Confidence 999999999999999888776 66666542 233333448899999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEecCCCCCCCeE------EEEEeCCeeeeEEEEEeCC-eEEecCCcccccHHHHHHhhhc
Q psy8516 148 LILQKGKNGSFLVRESQSKPGDFV------LSVRTDDKVTHVMIRCQAE-KYDVGGGEQFDSLTQLIEHYKR 212 (451)
Q Consensus 148 ~l~~~~~~G~flvR~s~~~~~~~~------ls~~~~~~v~h~~I~~~~~-~~~~~~~~~F~sl~~Li~~y~~ 212 (451)
.++.+. |+.-.+.+..|. ..+.+.+.|+-+-|....+ .|.+.. |.....|++|.+.
T Consensus 232 ~vavk~------ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE---~m~~GsLl~yLr~ 294 (468)
T KOG0197|consen 232 KVAVKT------IKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTE---YMPKGSLLDYLRT 294 (468)
T ss_pred cccceE------EeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEE---ecccCcHHHHhhh
Confidence 888772 222234444443 3334444444444433333 455543 5555555555544
No 23
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.83 E-value=4.4e-20 Score=145.12 Aligned_cols=80 Identities=50% Similarity=0.877 Sum_probs=73.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecC-CcccCCHHHHHHHHHh
Q psy8516 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYG-GEKFATLSELVQFYME 83 (451)
Q Consensus 5 ~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~-~~~f~sl~~Lv~~y~~ 83 (451)
+||||.|+|++||++|.+.+ +|+||||.|.+.++.|+||++.+++++|++|...++++++.. ...|+||.+||+||+.
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~-~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~ 79 (94)
T cd00173 1 PWYHGPISREEAEELLKKKP-DGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQK 79 (94)
T ss_pred CccccCCCHHHHHHHHhcCC-CceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhh
Confidence 79999999999999999866 999999999888899999999999999999999877777665 7789999999999998
Q ss_pred cc
Q psy8516 84 NQ 85 (451)
Q Consensus 84 ~~ 85 (451)
++
T Consensus 80 ~~ 81 (94)
T cd00173 80 NP 81 (94)
T ss_pred Cc
Confidence 87
No 24
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.82 E-value=4.4e-20 Score=139.14 Aligned_cols=76 Identities=53% Similarity=0.890 Sum_probs=70.2
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCe-EEecCCcccCCHHHHHHHH
Q psy8516 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC-YDLYGGEKFATLSELVQFY 81 (451)
Q Consensus 6 wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~-~~~~~~~~f~sl~~Lv~~y 81 (451)
||||.|+|++||++|.+..++|+||||.|.+.+|.|+|||+..++++|++|.+.+++ +++.++..|+||.+||+||
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 999999999999999993349999999999888999999999999999999997776 8887888899999999998
No 25
>KOG0790|consensus
Probab=99.71 E-value=1.6e-17 Score=155.67 Aligned_cols=102 Identities=48% Similarity=0.801 Sum_probs=93.7
Q ss_pred CCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECC---------eEEEEEEEeeCCeEEecCCcccCC
Q psy8516 3 SRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNG---------EVTHIKIQNTGDCYDLYGGEKFAT 73 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~---------~~~h~~I~~~~~~~~~~~~~~f~s 73 (451)
++.||||.||-.+||+||.+.+.+|+||||+|.+.||+|||||+.++ +|.|+.|...+++|.+.++..|.|
T Consensus 109 serWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~s 188 (600)
T KOG0790|consen 109 SERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFDS 188 (600)
T ss_pred hhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccch
Confidence 46799999999999999988888999999999999999999999765 899999999999999988999999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCCCCC
Q psy8516 74 LSELVQFYMENQGQLKKRNQEVIELKYPLSCAD 106 (451)
Q Consensus 74 l~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~ 106 (451)
|.+||+||..++ +.+..|.++.|+.|+....
T Consensus 189 ltdLidhykknp--mvEt~gtvv~LrqP~naTr 219 (600)
T KOG0790|consen 189 LTDLVEHYKKNP--MVETLGTVVYLRQPLNATR 219 (600)
T ss_pred HHHHHHHhccCc--hhhhcceeEEeeccccccc
Confidence 999999999887 7888899999999987554
No 26
>KOG0194|consensus
Probab=99.68 E-value=1.3e-16 Score=157.08 Aligned_cols=200 Identities=23% Similarity=0.334 Sum_probs=144.1
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCc---e-EEEEEEC--CeEEEEEEEeeCCeEEecCCcccCCHH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGD---F-TLSVRLN--GEVTHIKIQNTGDCYDLYGGEKFATLS 75 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~---~-~ls~~~~--~~~~h~~I~~~~~~~~~~~~~~f~sl~ 75 (451)
..++||||.|.|++|+.+|.+ +|+||||.|...+|. + +|||... ..++||.|.+.++++++.....|+++.
T Consensus 47 ~~~~~yHG~l~red~~~lL~~---~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~si~ 123 (474)
T KOG0194|consen 47 RELPYYHGLLPREDAEKLLKN---DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPTIS 123 (474)
T ss_pred hcCccccccccHhHHHHHhCC---CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCcHH
Confidence 357999999999999999999 999999999887664 3 9999985 789999999988888888889999999
Q ss_pred HHHHHHHhccccccccccceeeecCCCCCCCCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCC
Q psy8516 76 ELVQFYMENQGQLKKRNQEVIELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKN 155 (451)
Q Consensus 76 ~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~ 155 (451)
+||.||..+...+... ...|..|+.++. |...+.+..+..++|+|+||.|..|....
T Consensus 124 ~li~~~~~~~~~~~~~---~~~L~~PI~r~~----------Wel~H~~v~l~kkLGeGaFGeV~~G~l~~---------- 180 (474)
T KOG0194|consen 124 ELVNYYKFSKLEITGK---NFFLKRPIPRQK----------WELSHSDIELGKKLGEGAFGEVFKGKLKL---------- 180 (474)
T ss_pred HHHHHHHhcccceecc---ceeecccccccc----------cEEeccCccccceeecccccEEEEEEEEe----------
Confidence 9999999998666443 447889987764 78888888888999999999999665222
Q ss_pred ceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCCeEEec--CCcccccHHHHHHhhhcCCcccccceeEEeccccc--c
Q psy8516 156 GSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG--GGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN--A 231 (451)
Q Consensus 156 G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~--~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~--~ 231 (451)
+... ...-+.|....+...+. ....|..-..++..|.+..++-..| +..+..|+- -
T Consensus 181 -----~~~~--------------~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yG-Va~~~~Pl~ivm 240 (474)
T KOG0194|consen 181 -----KNGF--------------KVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYG-VAVLEEPLMLVM 240 (474)
T ss_pred -----cCCc--------------eeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEE-EEcCCCccEEEE
Confidence 1110 00003444433312122 2356888888899999999888777 344555531 1
Q ss_pred ccccccchhhhHHHhh
Q psy8516 232 TRITVSNIHDRVTELQ 247 (451)
Q Consensus 232 t~i~~~~l~~~v~~l~ 247 (451)
.-.+--.|.+++++..
T Consensus 241 El~~gGsL~~~L~k~~ 256 (474)
T KOG0194|consen 241 ELCNGGSLDDYLKKNK 256 (474)
T ss_pred EecCCCcHHHHHHhCC
Confidence 1122225566665543
No 27
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.66 E-value=7.9e-16 Score=120.80 Aligned_cols=93 Identities=48% Similarity=0.878 Sum_probs=80.7
Q ss_pred ccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCC
Q psy8516 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE 190 (451)
Q Consensus 111 ~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~ 190 (451)
+||||.+++++|+.+|... ++|+||||.|+..++.|+||++.++++.|++|....+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~------------------------~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~ 56 (94)
T cd00173 1 PWYHGPISREEAEELLKKK------------------------PDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDD 56 (94)
T ss_pred CccccCCCHHHHHHHHhcC------------------------CCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCC
Confidence 5999999999999999873 5999999999988999999999999999999999888
Q ss_pred eEEecC-CcccccHHHHHHhhhcCCcccccceeEEecccc
Q psy8516 191 KYDVGG-GEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPF 229 (451)
Q Consensus 191 ~~~~~~-~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~ 229 (451)
++.+.. ...|+|+.+||++|+..++ ..+..+.|+.|+
T Consensus 57 ~~~~~~~~~~f~sl~eLv~~y~~~~~--~~~~~~~L~~p~ 94 (94)
T cd00173 57 GYYLLGEGRSFPSLPELIEHYQKNPL--SDGLGVKLRYPV 94 (94)
T ss_pred CeEEecCCCccCCHHHHHHHHhhCcc--CCCcccEeCCcC
Confidence 776665 7899999999999999987 444556676663
No 28
>KOG4226|consensus
Probab=99.65 E-value=5.3e-16 Score=136.45 Aligned_cols=100 Identities=36% Similarity=0.607 Sum_probs=83.5
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHH
Q psy8516 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQF 80 (451)
Q Consensus 1 l~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~ 80 (451)
+...|||.|.|+|.+||.+|...+.+|+||||+|++.+|+|.+|++..|+-+||++...++-|++ +...|.++++||+|
T Consensus 278 ~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d~~ycI-GqRkF~tmd~Lv~H 356 (379)
T KOG4226|consen 278 FAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVDNVYCI-GQRKFHTMDELVEH 356 (379)
T ss_pred ccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEecceEEe-ccceeccHHHHHHh
Confidence 35689999999999999999877779999999999999999999999999999999877776654 88999999999999
Q ss_pred HHhccccccccccceeeecCCC
Q psy8516 81 YMENQGQLKKRNQEVIELKYPL 102 (451)
Q Consensus 81 y~~~~~~l~~~~~~~i~L~~Pv 102 (451)
|...+.-... .+..+-|..++
T Consensus 357 Y~kaPIfts~-qgEKLyLvr~L 377 (379)
T KOG4226|consen 357 YKKAPIFTSE-QGEKLYLVRAL 377 (379)
T ss_pred hhcCCceecC-CCceEEEeccC
Confidence 9887743222 24444555544
No 29
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.65 E-value=9.9e-16 Score=117.44 Aligned_cols=82 Identities=48% Similarity=0.899 Sum_probs=74.1
Q ss_pred cccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeC
Q psy8516 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 189 (451)
Q Consensus 110 ~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~ 189 (451)
++||||.+.+++|+.+|... ++|+||||.|+..++.|+||++.++.++|++|....
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~------------------------~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~ 56 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNE------------------------GDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNE 56 (84)
T ss_pred CCeecccCCHHHHHHHHhcC------------------------CCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECC
Confidence 36999999999999998864 399999999998899999999999999999999877
Q ss_pred -CeEEecCCcccccHHHHHHhhhcCCc
Q psy8516 190 -EKYDVGGGEQFDSLTQLIEHYKRNPM 215 (451)
Q Consensus 190 -~~~~~~~~~~F~sl~~Li~~y~~~~l 215 (451)
+.|.+.+...|.||.+||+||+.+++
T Consensus 57 ~~~~~l~~~~~F~sl~eLI~~y~~~~~ 83 (84)
T smart00252 57 DGKFYLDGGRKFPSLVELVEHYQKNSL 83 (84)
T ss_pred CCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 78988877899999999999988764
No 30
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.65 E-value=7.6e-16 Score=115.96 Aligned_cols=76 Identities=51% Similarity=0.883 Sum_probs=69.7
Q ss_pred cccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCCe
Q psy8516 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEK 191 (451)
Q Consensus 112 w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~ 191 (451)
||+|.+++++|+.+|.... ++|+||||.|.+.++.|+||++.++++.|++|.+.+++
T Consensus 1 W~~g~isr~~Ae~~L~~~~-----------------------~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~ 57 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGK-----------------------PDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENG 57 (77)
T ss_dssp TBEESSHHHHHHHHHHTTS-----------------------STTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTS
T ss_pred CcCCCCCHHHHHHHHHhcC-----------------------CCCeEEEEeccccccccccccccccccEEEEEEecCCc
Confidence 8999999999999998722 69999999999999999999999999999999998876
Q ss_pred -EEecCCcccccHHHHHHhh
Q psy8516 192 -YDVGGGEQFDSLTQLIEHY 210 (451)
Q Consensus 192 -~~~~~~~~F~sl~~Li~~y 210 (451)
|.+.....|+||.+||+||
T Consensus 58 ~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 58 GYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp EEESSTSSEBSSHHHHHHHH
T ss_pred eEEccCCCcCCCHHHHHHhC
Confidence 8888888899999999997
No 31
>KOG4792|consensus
Probab=99.51 E-value=4e-14 Score=121.47 Aligned_cols=93 Identities=33% Similarity=0.550 Sum_probs=76.5
Q ss_pred CCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEee--------CCeEEecCCcccCCHH
Q psy8516 4 RRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNT--------GDCYDLYGGEKFATLS 75 (451)
Q Consensus 4 ~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~--------~~~~~~~~~~~f~sl~ 75 (451)
..||+|.|||+||.++|.... .|.||||+|++.+|+|+|||+-+.+|.||.|.+. ..++. .++..|++|+
T Consensus 11 ~swYfg~mSRqeA~~lL~~~r-~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~r-IgdQ~Fd~lP 88 (293)
T KOG4792|consen 11 SSWYFGPMSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLR-IGDQEFDSLP 88 (293)
T ss_pred cceecCcccHHHHHHHhcCcc-eeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceee-eccccccchH
Confidence 479999999999999998877 9999999999999999999999999999999762 12444 4788899999
Q ss_pred HHHHHHHhccccccccccceeeecCCCCCC
Q psy8516 76 ELVQFYMENQGQLKKRNQEVIELKYPLSCA 105 (451)
Q Consensus 76 ~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~ 105 (451)
.|++||..+- |.. ..|..|+++.
T Consensus 89 aLL~fykihy--Ldt-----ttLi~p~~r~ 111 (293)
T KOG4792|consen 89 ALLEFYKIHY--LDT-----TTLIEPAKRS 111 (293)
T ss_pred HHHhheeEee--ecc-----cccccccccc
Confidence 9999998764 322 2466665544
No 32
>KOG2996|consensus
Probab=99.48 E-value=4.2e-14 Score=136.67 Aligned_cols=101 Identities=31% Similarity=0.520 Sum_probs=87.5
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHHH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQFY 81 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~y 81 (451)
..++||.|.|-|++||..|+..+ +|+||||.+....+.|++|+++++.|+|+.|...+|.+++.+...|.|+.+||+||
T Consensus 683 s~~~WyaG~MERaqaes~Lk~~~-ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELVeyY 761 (865)
T KOG2996|consen 683 SEFPWYAGEMERAQAESTLKNRP-NGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELVEYY 761 (865)
T ss_pred hhhhhhcchHhhhhhhhHhhcCC-CceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHHHHH
Confidence 56899999999999999999988 99999999977788899999999999999999999999999999999999999999
Q ss_pred Hhccccccccc-cceeeecCCCCCC
Q psy8516 82 MENQGQLKKRN-QEVIELKYPLSCA 105 (451)
Q Consensus 82 ~~~~~~l~~~~-~~~i~L~~Pv~~~ 105 (451)
+.++ |...- ..-..|+.|.+.+
T Consensus 762 q~~s--Lke~Fk~LDTtLk~Pyke~ 784 (865)
T KOG2996|consen 762 QSHS--LKEIFKALDTTLKFPYKEP 784 (865)
T ss_pred Hhcc--HHHHHHHhhhhhcCCCcCh
Confidence 9987 43321 1224577776543
No 33
>KOG1264|consensus
Probab=99.42 E-value=4.5e-13 Score=134.11 Aligned_cols=95 Identities=32% Similarity=0.658 Sum_probs=80.6
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHHH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQFY 81 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~y 81 (451)
+++||||..++|++||++|..-+.||+|||| +......|+||++.+|+++|+||.+++. .+..+...|.||.+||+||
T Consensus 646 e~k~W~~as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~rdGr-~fvl~t~~FesLv~lv~yY 723 (1267)
T KOG1264|consen 646 ESKPWYHASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRARGKIKHCRINRDGR-HFVLGTSAFESLVELVSYY 723 (1267)
T ss_pred cCCccccccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEEcCcEeEEEEccCce-EEEeccHHHHHHHHHHHHH
Confidence 6899999999999999999999989999999 5466777999999999999999987554 4556777899999999999
Q ss_pred HhccccccccccceeeecCCCCC
Q psy8516 82 MENQGQLKKRNQEVIELKYPLSC 104 (451)
Q Consensus 82 ~~~~~~l~~~~~~~i~L~~Pv~~ 104 (451)
..++ +- ..+.|++|+..
T Consensus 724 ~k~~--ly----R~mkLr~PVne 740 (1267)
T KOG1264|consen 724 EKHP--LY----RKMKLRYPVNE 740 (1267)
T ss_pred hcCh--hh----hcccccCcCCH
Confidence 8886 31 24678888754
No 34
>KOG4226|consensus
Probab=99.41 E-value=1.2e-12 Score=115.49 Aligned_cols=98 Identities=29% Similarity=0.675 Sum_probs=85.0
Q ss_pred CccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEE
Q psy8516 108 TTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRC 187 (451)
Q Consensus 108 ~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~ 187 (451)
...+||+|.++|..||..|-..+ -+|.||||+|+++||+|++|++..++-+||+|..
T Consensus 279 ag~~WYyG~itR~qae~~Ln~hG-----------------------~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~ 335 (379)
T KOG4226|consen 279 AGRPWYYGNITRHQAECALNEHG-----------------------HEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQL 335 (379)
T ss_pred cCCcceeccccHHHHHHHHhccC-----------------------ccCceEEecCCCCCcceeEEeeccCCCcceEEEE
Confidence 45689999999999999987666 5999999999999999999999999999999999
Q ss_pred eCCeEEecCCcccccHHHHHHhhhcCCccccc-ceeEEecccc
Q psy8516 188 QAEKYDVGGGEQFDSLTQLIEHYKRNPMVETS-GTVVHLKQPF 229 (451)
Q Consensus 188 ~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~-g~~~~L~~p~ 229 (451)
.++-|.+ +.++|.++++||+||+..++-... |.-+.|..++
T Consensus 336 ~d~~ycI-GqRkF~tmd~Lv~HY~kaPIfts~qgEKLyLvr~L 377 (379)
T KOG4226|consen 336 VDNVYCI-GQRKFHTMDELVEHYKKAPIFTSEQGEKLYLVRAL 377 (379)
T ss_pred ecceEEe-ccceeccHHHHHHhhhcCCceecCCCceEEEeccC
Confidence 9998877 568999999999999999985543 5556665554
No 35
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=99.36 E-value=7.2e-12 Score=111.32 Aligned_cols=172 Identities=21% Similarity=0.407 Sum_probs=115.8
Q ss_pred CCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEE-CCeEEEEEEEeeC-------CeEEecCCcccCCH
Q psy8516 3 SRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRL-NGEVTHIKIQNTG-------DCYDLYGGEKFATL 74 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~-~~~~~h~~I~~~~-------~~~~~~~~~~f~sl 74 (451)
.+|-|+ +++-.+|+++|...+ .|++|||+|+......+++++. +|-..|+.|...+ |.-...++..|.+|
T Consensus 37 ~HP~F~-n~~~~qAe~~L~~~~-~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDL 114 (220)
T PF14633_consen 37 KHPLFK-NFNYKQAEEYLADQD-VGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDL 114 (220)
T ss_dssp CSTTEE-SS-HHHHHHHHCCS--TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSH
T ss_pred cCCCcc-CCCHHHHHHHHhcCC-CCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCH
Confidence 578888 999999999999988 8999999997767779999996 4566899997632 22334478889999
Q ss_pred HHHHHHHHhccccccccccceeeecCCCCCCCCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCC
Q psy8516 75 SELVQFYMENQGQLKKRNQEVIELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGK 154 (451)
Q Consensus 75 ~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~ 154 (451)
+|||..|...-...... .+ . ...|..| ++.+.+..|.... ...+.
T Consensus 115 DEii~r~V~pm~~~v~~---~~--~---------h~kf~~g--~~~e~e~~L~~~k-------------------~~nP~ 159 (220)
T PF14633_consen 115 DEIIARHVEPMARNVEE---MM--N---------HRKFKDG--TKEEVEEWLKEEK-------------------KANPK 159 (220)
T ss_dssp HHHHHHCHHHHHHHHHH---HH--C---------STTEESS---CCCCHHHHHCHH-------------------HHSTT
T ss_pred HHHHHHHHHHHHHHHHH---HH--h---------CccccCC--CHHHHHHHHHHHH-------------------HhCCC
Confidence 99999997653211110 00 0 0011112 2334444444321 11224
Q ss_pred CceEEEecCCCCCCCeEEEEEeCCeeeeEE--EEEeCCeEEecCCcccccHHHHHHhhhc
Q psy8516 155 NGSFLVRESQSKPGDFVLSVRTDDKVTHVM--IRCQAEKYDVGGGEQFDSLTQLIEHYKR 212 (451)
Q Consensus 155 ~G~flvR~s~~~~~~~~ls~~~~~~v~h~~--I~~~~~~~~~~~~~~F~sl~~Li~~y~~ 212 (451)
.-.|.+--+...||.|.|++.......|.. |...+++|.+ +...|+++.+|+++++.
T Consensus 160 ~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~Gf~~-r~~~f~~~~~L~~~FK~ 218 (220)
T PF14633_consen 160 RIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDGFRF-RKQVFPSLDRLINWFKK 218 (220)
T ss_dssp S-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSSEEE-TTEEESSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCcEEE-ecccCCCHHHHHHHHhh
Confidence 556888888889999999999877666655 8888998987 57899999999999875
No 36
>KOG4278|consensus
Probab=99.36 E-value=1.9e-12 Score=127.37 Aligned_cols=99 Identities=32% Similarity=0.544 Sum_probs=87.6
Q ss_pred CCCCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeE
Q psy8516 104 CADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV 183 (451)
Q Consensus 104 ~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~ 183 (451)
....+...||||.++|..+|-+|..-+ .|+||||+|++++|+|++|+++.++|.||
T Consensus 146 vNSLeKhsWYHGpvSRsaaEy~LsSgI------------------------nGSFLVRESEsSpgQ~sISlRyeGRVyHY 201 (1157)
T KOG4278|consen 146 VNSLEKHSWYHGPVSRSAAEYILSSGI------------------------NGSFLVRESESSPGQYSISLRYEGRVYHY 201 (1157)
T ss_pred ccchhhcccccCccccchhhhhhhcCc------------------------ccceEEeeccCCCcceeEEEEecceEEEE
Confidence 344567789999999999999988765 99999999999999999999999999999
Q ss_pred EEEEe-CCeEEecCCcccccHHHHHHhhhcCCcccccceeEEeccccc
Q psy8516 184 MIRCQ-AEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN 230 (451)
Q Consensus 184 ~I~~~-~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~ 230 (451)
+|..+ +|+.++.....|.+|.+||+||.... +|.++.|++|-+
T Consensus 202 RINt~~dgK~yvt~EsrF~TLaELVHHHStvA----DGLittLhYPAp 245 (1157)
T KOG4278|consen 202 RINTDNDGKMYVTQESRFRTLAELVHHHSTVA----DGLITTLHYPAP 245 (1157)
T ss_pred EeeccCCccEEEeehhhhhHHHHHHhhccccc----cceeEeeeccCc
Confidence 99874 56777888899999999999988776 899999998853
No 37
>KOG4637|consensus
Probab=99.35 E-value=1.9e-12 Score=118.93 Aligned_cols=99 Identities=26% Similarity=0.546 Sum_probs=87.6
Q ss_pred CCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEE
Q psy8516 107 PTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIR 186 (451)
Q Consensus 107 ~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~ 186 (451)
....+||+|.++|+++...|...+ ||+||||+.++-+|+|+|+++.++.++-++|.
T Consensus 20 L~~a~WYWgdisReev~~~L~d~P------------------------DGsFlVRdAstm~GdYTLtl~k~g~~KLikI~ 75 (464)
T KOG4637|consen 20 LQDAEWYWGDISREEVNKKLRDQP------------------------DGSFLVRDASTMQGDYTLTLRKGGNNKLIKIV 75 (464)
T ss_pred hhhccccccccCHHHHHHHhcCCC------------------------CCcEEeeccccCCCceEEEEecCCccceeeeE
Confidence 346689999999999998888764 99999999888899999999999999999999
Q ss_pred EeCCeEEecCCcccccHHHHHHhhhcCCccccccee-EEecccc
Q psy8516 187 CQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTV-VHLKQPF 229 (451)
Q Consensus 187 ~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~-~~L~~p~ 229 (451)
..+|+|.+.+...|.|+.+||+||+..++..-.... +.|-+|+
T Consensus 76 h~DgKyGF~d~ltf~SVVelIn~yr~~SL~~yN~~LDvrLlyPV 119 (464)
T KOG4637|consen 76 HRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVRLLYPV 119 (464)
T ss_pred EecCccCCCCchhhHHHHHHHHHHhhhHHHhhCcccceeeechH
Confidence 999999999999999999999999999987755444 7787775
No 38
>KOG1930|consensus
Probab=99.26 E-value=1.4e-11 Score=115.14 Aligned_cols=139 Identities=25% Similarity=0.327 Sum_probs=96.6
Q ss_pred CCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEE----------C-----CeEEEEEEEeeCCeEEecC
Q psy8516 3 SRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRL----------N-----GEVTHIKIQNTGDCYDLYG 67 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~----------~-----~~~~h~~I~~~~~~~~~~~ 67 (451)
+.-||..+|||++|.+||+++. +|+||||+|.+.+|.|-|.++. + ..|+||.|+...++..+.+
T Consensus 211 SKyWYKP~isREQAIalLrdke-PGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGVkLKG 289 (483)
T KOG1930|consen 211 SKYWYKPNISREQAIALLRDKE-PGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGVKLKG 289 (483)
T ss_pred cccccCCCCCHHHHHHHhhcCC-CCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCceeccC
Confidence 5679999999999999999999 9999999999999999999982 1 3489999998777776654
Q ss_pred ---CcccCCHHHHHHHHHhccccccccccceeeecCCCCCCCCCccccccCCcchHHHHHHHHHcCCCCCccc--ccCch
Q psy8516 68 ---GEKFATLSELVQFYMENQGQLKKRNQEVIELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLV--RESQS 142 (451)
Q Consensus 68 ---~~~f~sl~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~--~~~~~ 142 (451)
...|.||..||--|+-....|+.. ..|+-+.|+.... ..-....+..+|++-....-++. |.++.
T Consensus 290 C~nEP~FGSLSALV~QHSIt~LALPck--L~iP~rDp~ee~~--------~~~~~~a~a~LLkqGAACnVlyl~SVd~ES 359 (483)
T KOG1930|consen 290 CDNEPVFGSLSALVYQHSITALALPCK--LVIPDRDPLEEAP--------VPEHTSATAALLKQGAACNVLYLGSVDVES 359 (483)
T ss_pred CCCCCccchhHHHHhhccchhhhccee--EeccCCCcccCCC--------CCCCchhHHHHHhhCccceEEEEeeeeccc
Confidence 556999999999988777666554 1222333322110 01123334444444333333333 56777
Q ss_pred HHHHHHHHhc
Q psy8516 143 KEAEQLILQK 152 (451)
Q Consensus 143 ~~a~~~l~~~ 152 (451)
.++.+.+.+.
T Consensus 360 LTG~~av~kA 369 (483)
T KOG1930|consen 360 LTGNEAVQKA 369 (483)
T ss_pred cccHHHHHHH
Confidence 7777776663
No 39
>KOG2996|consensus
Probab=99.24 E-value=7e-12 Score=121.53 Aligned_cols=100 Identities=25% Similarity=0.543 Sum_probs=87.6
Q ss_pred ccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEe
Q psy8516 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQ 188 (451)
Q Consensus 109 ~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~ 188 (451)
..+||.|.|+|..||.+|... ++|+||||.+....+.|++|+++++.|+|++|...
T Consensus 684 ~~~WyaG~MERaqaes~Lk~~------------------------~ngT~LVR~r~kea~e~AISikynnevKHikI~~~ 739 (865)
T KOG2996|consen 684 EFPWYAGEMERAQAESTLKNR------------------------PNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN 739 (865)
T ss_pred hhhhhcchHhhhhhhhHhhcC------------------------CCceEEEEecccchhheeEEEEeccccceEEEEec
Confidence 457888888888888887765 59999999999999999999999999999999999
Q ss_pred CCeEEecCCcccccHHHHHHhhhcCCccccccee-EEeccccccc
Q psy8516 189 AEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTV-VHLKQPFNAT 232 (451)
Q Consensus 189 ~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~-~~L~~p~~~t 232 (451)
+|.+.+.....|.|+.+||+||+.+++.+...+. ..|+.|+...
T Consensus 740 dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~Pyke~ 784 (865)
T KOG2996|consen 740 DGKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFPYKEP 784 (865)
T ss_pred CCeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCCCcCh
Confidence 9999999999999999999999999998877655 6677776433
No 40
>KOG0197|consensus
Probab=99.10 E-value=1.8e-10 Score=112.45 Aligned_cols=99 Identities=41% Similarity=0.667 Sum_probs=84.8
Q ss_pred CCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCC------ee
Q psy8516 107 PTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDD------KV 180 (451)
Q Consensus 107 ~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~------~v 180 (451)
...++||++.++|++|+..|....+ +.|+||||+|++.+|.|+||++... .|
T Consensus 78 l~~~~Wf~~~isR~~ae~~ll~p~~----------------------~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v 135 (468)
T KOG0197|consen 78 LSDEPWFFGKISREEAERQLLAPEN----------------------KEGAFLVRESESDKGDYSLSVREGDSGGLGAKV 135 (468)
T ss_pred cccCCchhccccHHHHHHhhcCCCC----------------------CccceeeecccCCcCCeeEEEEeccccCCccce
Confidence 4577999999999999986665543 7899999999999999999999876 89
Q ss_pred eeEEEEEeCC-eEE--ecCCcccccHHHHHHhhhcCCcccccceeEEecccccc
Q psy8516 181 THVMIRCQAE-KYD--VGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNA 231 (451)
Q Consensus 181 ~h~~I~~~~~-~~~--~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~~ 231 (451)
.|++|...++ ++. +.....|.++.+||+||+.+. .|.+..|+.|+..
T Consensus 136 ~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~~~~~----~gl~~~l~~p~~~ 185 (468)
T KOG0197|consen 136 KHYRIRQLDGGGLYPYIDERELFSSLQQLVNYYSKNA----DGLCTRLRDPCSK 185 (468)
T ss_pred eeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhhhccC----cchhhcccCchhc
Confidence 9999998654 566 777889999999999999988 6778888888754
No 41
>KOG4792|consensus
Probab=99.08 E-value=2.3e-10 Score=98.64 Aligned_cols=83 Identities=37% Similarity=0.746 Sum_probs=67.7
Q ss_pred cccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEe-
Q psy8516 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQ- 188 (451)
Q Consensus 110 ~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~- 188 (451)
..||+|.++|++|..+|+.. ..|.||||+|++.||+|+|+|+.+.+|.||.|..+
T Consensus 11 ~swYfg~mSRqeA~~lL~~~------------------------r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~ 66 (293)
T KOG4792|consen 11 SSWYFGPMSRQEAVALLQGQ------------------------RHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSP 66 (293)
T ss_pred cceecCcccHHHHHHHhcCc------------------------ceeeEEEecCCCCCCceEEEEecCcceeeeeecCCC
Confidence 45777777777777776644 38999999999999999999999999999999762
Q ss_pred -------CCeEEecCCcccccHHHHHHhhhcCCccc
Q psy8516 189 -------AEKYDVGGGEQFDSLTQLIEHYKRNPMVE 217 (451)
Q Consensus 189 -------~~~~~~~~~~~F~sl~~Li~~y~~~~lv~ 217 (451)
+.++.+ +...|++|+.|++||+.+-+..
T Consensus 67 p~~~~~~~~~~rI-gdQ~Fd~lPaLL~fykihyLdt 101 (293)
T KOG4792|consen 67 PSPAQPPPSRLRI-GDQEFDSLPALLEFYKIHYLDT 101 (293)
T ss_pred CCccCCCcceeee-ccccccchHHHHhheeEeeecc
Confidence 115655 4689999999999999887644
No 42
>KOG1856|consensus
Probab=99.05 E-value=1.1e-09 Score=114.48 Aligned_cols=176 Identities=23% Similarity=0.433 Sum_probs=130.9
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeE-EEEEEEeeC-------CeEEecCCcccCC
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEV-THIKIQNTG-------DCYDLYGGEKFAT 73 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~-~h~~I~~~~-------~~~~~~~~~~f~s 73 (451)
..||-|| +++-++||++|.... .|.++||+|+......|++++..+.+ +|+-|...+ |+-...++..|.+
T Consensus 1106 I~HP~F~-n~n~eQAe~yL~~~d-~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feD 1183 (1299)
T KOG1856|consen 1106 IAHPLFK-NLNAEQAEAYLSDMD-QGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFED 1183 (1299)
T ss_pred hcCcccc-CCCHHHHHHHHHhcc-cccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCccccc
Confidence 4689999 899999999999988 99999999987777799999976555 777775421 2333457888999
Q ss_pred HHHHHHHHHhccccccccccceeeecCCCCCCCCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcC
Q psy8516 74 LSELVQFYMENQGQLKKRNQEVIELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKG 153 (451)
Q Consensus 74 l~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~ 153 (451)
|+++|..|.......... ......|.. =++.+.+..|..... ..+
T Consensus 1184 LDEiI~r~vqpm~~~~~e---------------m~nhkyf~~-Gt~~~~ek~L~~~k~-------------------~np 1228 (1299)
T KOG1856|consen 1184 LDEIIARYVQPMATNLRE---------------MTNHKYFFT-GTKKEVEKLLRDYKK-------------------VNP 1228 (1299)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHhhhHhhc-CCHHHHHHHHHHHhc-------------------cCC
Confidence 999999997764221100 011112221 226666666664331 112
Q ss_pred CCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCCeEEecCCcccccHHHHHHhhhcCCc
Q psy8516 154 KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPM 215 (451)
Q Consensus 154 ~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~l 215 (451)
+--.|.+-.|...||.|.|+++...+++|--|...+.+|++ ++..|+|++.|+.+++.+-.
T Consensus 1229 ~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~-rg~~f~tld~L~~~FK~h~~ 1289 (1299)
T KOG1856|consen 1229 KKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRF-RGQNFGTLDELCRWFKRHYK 1289 (1299)
T ss_pred CeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEE-ecccchhHHHHHHHHHHHhc
Confidence 34468888999999999999999999999999888888876 56899999999999988764
No 43
>KOG3601|consensus
Probab=98.99 E-value=4.4e-11 Score=102.53 Aligned_cols=84 Identities=33% Similarity=0.468 Sum_probs=74.7
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHHH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQFY 81 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~y 81 (451)
..++||+|.|+|+.||++|.... +|+||+|.+++.+|.|.+|++....|+|+.+.+...+-++.....|.++.+|++||
T Consensus 56 ~~~~wve~~i~r~~ae~~l~~~~-~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~ 134 (222)
T KOG3601|consen 56 KPHEWVEGLIPRPLAEDLLSKKR-DGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYH 134 (222)
T ss_pred ccccceecccccchhhhhhhccC-cchhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccC
Confidence 46899999999999999999866 99999999999999999999999999999998865544445678899999999999
Q ss_pred Hhccc
Q psy8516 82 MENQG 86 (451)
Q Consensus 82 ~~~~~ 86 (451)
+.++.
T Consensus 135 rt~s~ 139 (222)
T KOG3601|consen 135 RTASQ 139 (222)
T ss_pred ccccc
Confidence 88763
No 44
>KOG0194|consensus
Probab=98.66 E-value=9.5e-08 Score=94.90 Aligned_cols=98 Identities=32% Similarity=0.572 Sum_probs=80.6
Q ss_pred cccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCC---e-EEEEEeC--CeeeeE
Q psy8516 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD---F-VLSVRTD--DKVTHV 183 (451)
Q Consensus 110 ~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~---~-~ls~~~~--~~v~h~ 183 (451)
.+||||-+.|++++.+|. .+|.||||.|+..++. + +||+... ..++|+
T Consensus 49 ~~~yHG~l~red~~~lL~--------------------------~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~ 102 (474)
T KOG0194|consen 49 LPYYHGLLPREDAEKLLK--------------------------NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHY 102 (474)
T ss_pred CccccccccHhHHHHHhC--------------------------CCCceEEEeecccCCcceeEEEEEEEeecCCceeEE
Confidence 579999999999999888 5999999999987663 4 8999875 889999
Q ss_pred EEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEeccccccccc
Q psy8516 184 MIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNATRI 234 (451)
Q Consensus 184 ~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~~t~i 234 (451)
.|...++.++......|.++.+|+.||+.+...-..+. ..|..|+....+
T Consensus 103 vi~~~~~~~~~~~~~~F~si~~li~~~~~~~~~~~~~~-~~L~~PI~r~~W 152 (474)
T KOG0194|consen 103 VIKRNGNLFFFEGLRKFPTISELVNYYKFSKLEITGKN-FFLKRPIPRQKW 152 (474)
T ss_pred EEEEcCCeeEEeccccCCcHHHHHHHHHhcccceeccc-eeeccccccccc
Confidence 99998888888888999999999999998887665443 367777654443
No 45
>KOG3601|consensus
Probab=98.59 E-value=2.4e-08 Score=85.89 Aligned_cols=114 Identities=26% Similarity=0.418 Sum_probs=88.8
Q ss_pred cCCHHHHHHHHHhccccccccccceeeecCCCCCCCCCccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHH
Q psy8516 71 FATLSELVQFYMENQGQLKKRNQEVIELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLIL 150 (451)
Q Consensus 71 f~sl~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~~~~~~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~ 150 (451)
--++.|.+.+|....++-.. ..|.........+|+++.+.|..++.++..+
T Consensus 27 ~l~~~d~~nw~~ael~g~~g--------~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~--------------------- 77 (222)
T KOG3601|consen 27 ILNMEDDINWYKAELDGPEG--------FIPKNAIRMKPHEWVEGLIPRPLAEDLLSKK--------------------- 77 (222)
T ss_pred ecchHHhhhhhhHhhcCccc--------cCcccccccccccceecccccchhhhhhhcc---------------------
Confidence 45677888888665433311 1233333344678999999999999998873
Q ss_pred hcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEe-CCeEEecCCcccccHHHHHHhhhcCCccc
Q psy8516 151 QKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQ-AEKYDVGGGEQFDSLTQLIEHYKRNPMVE 217 (451)
Q Consensus 151 ~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~-~~~~~~~~~~~F~sl~~Li~~y~~~~lv~ 217 (451)
.+|.||||.|++++|.|.+|+++.+.|+|+++.+. .++|++ ...+|.++.+|++||.......
T Consensus 78 ---~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~l-w~skfnslnplv~Y~rt~s~~r 141 (222)
T KOG3601|consen 78 ---RDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFL-WSSKFNSLNPLVSYHRTASQSR 141 (222)
T ss_pred ---CcchhhhhhhhcCcccccccccCCCCceeccccccCcccccc-chhhccCCCCCcccCccccccc
Confidence 59999999999999999999999999999999864 456654 5688999999999998877544
No 46
>KOG1930|consensus
Probab=98.52 E-value=1.5e-07 Score=88.73 Aligned_cols=98 Identities=23% Similarity=0.440 Sum_probs=80.2
Q ss_pred ccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeC-----------
Q psy8516 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTD----------- 177 (451)
Q Consensus 109 ~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~----------- 177 (451)
.+-||...|+|++|-.+|.++. +|+||||+|.+..|.|-|.++..
T Consensus 211 SKyWYKP~isREQAIalLrdke------------------------PGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g 266 (483)
T KOG1930|consen 211 SKYWYKPNISREQAIALLRDKE------------------------PGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDG 266 (483)
T ss_pred cccccCCCCCHHHHHHHhhcCC------------------------CCeEEEecCCcCCCccceEEEeccCCCcccCCCC
Confidence 4469999999999999988774 99999999999999998888741
Q ss_pred ----CeeeeEEEEEeCCeEEecC---CcccccHHHHHHhhhcCCcccccceeEEeccccc
Q psy8516 178 ----DKVTHVMIRCQAEKYDVGG---GEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN 230 (451)
Q Consensus 178 ----~~v~h~~I~~~~~~~~~~~---~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p~~ 230 (451)
+.|+||+|.++..+..+-+ .+.|.||..||-.|.-.++.......+.-++|+.
T Consensus 267 ~~~neLVRHFLIE~spkGVkLKGC~nEP~FGSLSALV~QHSIt~LALPckL~iP~rDp~e 326 (483)
T KOG1930|consen 267 SDSNELVRHFLIEPSPKGVKLKGCDNEPVFGSLSALVYQHSITALALPCKLVIPDRDPLE 326 (483)
T ss_pred CchhhhhhhheeccCCCceeccCCCCCCccchhHHHHhhccchhhhcceeEeccCCCccc
Confidence 4599999999888766643 6889999999988887777766655555566665
No 47
>KOG3697|consensus
Probab=98.31 E-value=8.6e-07 Score=79.57 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=76.4
Q ss_pred CCCccCCCCCHHHHHHHHhcCCCCCeEEEeec-----------------------------------------------C
Q psy8516 3 SRRWFHPSISGVEAEVLLLERGYDGSFLVRPS-----------------------------------------------R 35 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s-----------------------------------------------~ 35 (451)
..|||||.+++++++++|.. +|.|++|.+ .
T Consensus 200 k~pp~~g~l~~~~~q~~l~~---~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~ 276 (345)
T KOG3697|consen 200 KMPPPGGFLDTRLKQRPLAP---DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET 276 (345)
T ss_pred cCCCCCCccchhhhhccCCc---ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence 46999999999999999987 888998864 3
Q ss_pred CCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHHHHHHhccccccccccceeeecCCCCC
Q psy8516 36 SNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPLSC 104 (451)
Q Consensus 36 ~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv~~y~~~~~~l~~~~~~~i~L~~Pv~~ 104 (451)
+.+|+|||+-..+|+.+|..+...+|- -...+..|.|+.-||.||..+..++...+. .+.|..|+.+
T Consensus 277 ~~~gqyvltgl~~~~~khlllvdpegv-vrtkd~~fdsishli~yh~~~~lpiis~~s-el~l~~pv~r 343 (345)
T KOG3697|consen 277 TTPGQYVLTGLQSGQPKHLLLVDPEGV-VRTKDRRFDSISHLINYHMDNHLPIISAGS-ELCLQQPVER 343 (345)
T ss_pred CCCccEEEecccCCCcceEEEECCccc-eecccchhhHHHHHHHHhhhccCceecCcc-hhhhhCcccc
Confidence 457889999999999999988654443 344678899999999999999876655433 3447777754
No 48
>KOG3751|consensus
Probab=98.30 E-value=3.6e-07 Score=88.62 Aligned_cols=90 Identities=41% Similarity=0.626 Sum_probs=75.7
Q ss_pred CCCCccCCCCCHHHHHHHHhcCC-CCCeEEEeecCCCCCceEEEEEECCeEEEEEEEee--CCeEEec---CCcccCCHH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNT--GDCYDLY---GGEKFATLS 75 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~-~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~--~~~~~~~---~~~~f~sl~ 75 (451)
..+.||||.|+|+++..++++.+ .+|.||+|+|.+.+..|+++......+.||.|... ++..++. +...|.++.
T Consensus 517 ~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd~~ 596 (622)
T KOG3751|consen 517 RSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSDLI 596 (622)
T ss_pred ccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCccccccc
Confidence 35789999999999999999998 78999999999999999999999999999999763 3333332 356699999
Q ss_pred HHHHHHHhcccccccc
Q psy8516 76 ELVQFYMENQGQLKKR 91 (451)
Q Consensus 76 ~Lv~~y~~~~~~l~~~ 91 (451)
.|+++|+.+++.++..
T Consensus 597 ql~~~~ql~k~~l~~a 612 (622)
T KOG3751|consen 597 QLVEFYQLNKGVLPCA 612 (622)
T ss_pred cccchhhcCCCcchHH
Confidence 9999999887666443
No 49
>KOG4566|consensus
Probab=97.54 E-value=0.00012 Score=66.77 Aligned_cols=83 Identities=27% Similarity=0.383 Sum_probs=67.6
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecC-----C--cccCCH
Q psy8516 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYG-----G--EKFATL 74 (451)
Q Consensus 2 ~~~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~-----~--~~f~sl 74 (451)
.+-+||||.++.++|+..|...+ -|+|+||+|...+-.+.|+++........+|...++.+.... . ..|+++
T Consensus 50 ~~~g~~w~~~~~~~~~~~l~~~p-~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~~e~~ 128 (258)
T KOG4566|consen 50 DSSGHYWGLETANEAELCLGQEP-RGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLISFEDV 128 (258)
T ss_pred ccCCcccccccchhHHHhhcCCC-ccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCcccChhH
Confidence 45689999999999999998876 999999999887777999999988888888877666555421 2 359999
Q ss_pred HHHHHHHHhcc
Q psy8516 75 SELVQFYMENQ 85 (451)
Q Consensus 75 ~~Lv~~y~~~~ 85 (451)
..++.+|+...
T Consensus 129 ~~~~~~y~~~~ 139 (258)
T KOG4566|consen 129 EVLIHHYRQSR 139 (258)
T ss_pred HHHHHhhhhhh
Confidence 99999995543
No 50
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.28 E-value=0.00037 Score=55.08 Aligned_cols=35 Identities=43% Similarity=1.005 Sum_probs=31.7
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhcc
Q psy8516 413 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDI 447 (451)
Q Consensus 413 ~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~ 447 (451)
++.||||++|||+++|..+..+++|++.+++..+.
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~ 35 (105)
T smart00404 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQ 35 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999988653
No 51
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.28 E-value=0.00037 Score=55.08 Aligned_cols=35 Identities=43% Similarity=1.005 Sum_probs=31.7
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHhhhcc
Q psy8516 413 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDI 447 (451)
Q Consensus 413 ~v~~~~~~~Wp~~~~P~~~~~~l~~~~~v~~~~~~ 447 (451)
++.||||++|||+++|..+..+++|++.+++..+.
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~ 35 (105)
T smart00012 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQ 35 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999988653
No 52
>KOG3751|consensus
Probab=96.88 E-value=0.0009 Score=65.66 Aligned_cols=84 Identities=42% Similarity=0.672 Sum_probs=69.2
Q ss_pred ccccccCCcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEe
Q psy8516 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQ 188 (451)
Q Consensus 109 ~~~w~~~~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~ 188 (451)
.+.|+|+.++++++..++.+.+. .+|.||+|+|.++|..|++++....+|.|+.|...
T Consensus 518 sq~~~~~kis~~es~~~ikq~gl----------------------v~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~ 575 (622)
T KOG3751|consen 518 SQTWFHGKISRDESQRLIKQQGL----------------------VDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPV 575 (622)
T ss_pred cccCcccccCchhhhhHHHhccc----------------------ceeeeeecccccCcchhhhhccCCccccceEEecC
Confidence 56799999999999998887765 89999999999999999999999999999999763
Q ss_pred C--C-eEEe-c-CCcccccHHHHHHhhhcCC
Q psy8516 189 A--E-KYDV-G-GGEQFDSLTQLIEHYKRNP 214 (451)
Q Consensus 189 ~--~-~~~~-~-~~~~F~sl~~Li~~y~~~~ 214 (451)
. | .|+. . +...|.++..|+++|+-+.
T Consensus 576 ~~~~~~~~t~~~g~t~~sd~~ql~~~~ql~k 606 (622)
T KOG3751|consen 576 EDDGCTFFTLDDGPTKFSDLIQLVEFYQLNK 606 (622)
T ss_pred CCCCceeeccCCCCccccccccccchhhcCC
Confidence 3 3 2332 2 2467888888998887663
No 53
>KOG3697|consensus
Probab=96.63 E-value=0.0029 Score=57.46 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=49.7
Q ss_pred CCCCCCeEEEEEeCCeeeeEEEEEeCCeEEecCCcccccHHHHHHhhhcCCccccc-ceeEEeccccc
Q psy8516 164 QSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETS-GTVVHLKQPFN 230 (451)
Q Consensus 164 ~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~-g~~~~L~~p~~ 230 (451)
...+|+|+|.-...++.+|.++.--.| ........|+|+..||+|+..+.+..+. |.-+.|++|+.
T Consensus 276 ~~~~gqyvltgl~~~~~khlllvdpeg-vvrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~ 342 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHLLLVDPEG-VVRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVE 342 (345)
T ss_pred cCCCccEEEecccCCCcceEEEECCcc-ceecccchhhHHHHHHHHhhhccCceecCcchhhhhCccc
Confidence 567899999999999999988764444 3334578899999999999988886643 33356666653
No 54
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=95.71 E-value=0.042 Score=49.39 Aligned_cols=72 Identities=18% Similarity=0.439 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHcCCCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeC-CeeeeEEEEEeC--C--
Q psy8516 116 QLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTD-DKVTHVMIRCQA--E-- 190 (451)
Q Consensus 116 ~~~~~~ae~~l~~~~~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~-~~v~h~~I~~~~--~-- 190 (451)
.++..+|+..|... ..|.++||.|+.+.+-.+++++.. +-..|+.|.-.+ .
T Consensus 43 n~~~~qAe~~L~~~------------------------~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~ 98 (220)
T PF14633_consen 43 NFNYKQAEEYLADQ------------------------DVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEF 98 (220)
T ss_dssp SS-HHHHHHHHCCS-------------------------TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTT
T ss_pred CCCHHHHHHHHhcC------------------------CCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCcc
Confidence 57777777776654 489999999998888889999765 556688886532 1
Q ss_pred ----eEEecCCcccccHHHHHHhhhc
Q psy8516 191 ----KYDVGGGEQFDSLTQLIEHYKR 212 (451)
Q Consensus 191 ----~~~~~~~~~F~sl~~Li~~y~~ 212 (451)
.+.+ ++..|.+|++||..|-.
T Consensus 99 slG~~L~i-~~~~yeDLDEii~r~V~ 123 (220)
T PF14633_consen 99 SLGKTLKI-GGEEYEDLDEIIARHVE 123 (220)
T ss_dssp S-SSEEEE-TTEEESSHHHHHHHCHH
T ss_pred ccCcEEEE-CCeEECCHHHHHHHHHH
Confidence 2333 46889999999987643
No 55
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=94.98 E-value=0.094 Score=37.77 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCCccCCCCCHHHHHHHHhcCC-CCCeEEEeecCCCCCceEEEEEEC
Q psy8516 3 SRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLN 48 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~-~~G~flvR~s~~~~~~~~ls~~~~ 48 (451)
.+|=|...|+-+|+.+.|+..- .+|+|+.|-|.++-|++++-+...
T Consensus 1 tHpgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 1 THPGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp S-TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred CCCceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence 3677889999999999998876 789999999999999998887654
No 56
>KOG4566|consensus
Probab=92.71 E-value=0.22 Score=45.79 Aligned_cols=83 Identities=27% Similarity=0.430 Sum_probs=61.2
Q ss_pred CCCCcccccCchHHHHHHHHhcCCCceEEEecCCCCCCCeEEEEEeCCeeeeEEEEEeCCeEEec-----CC--cccccH
Q psy8516 131 KNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG-----GG--EQFDSL 203 (451)
Q Consensus 131 ~~g~fg~~~~~~~~a~~~l~~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~-----~~--~~F~sl 203 (451)
.+.+|.|+.+-..+|...+... +.|+||||+|...+-.+.|+++.....+..+|.+.++.|... .. ..|+..
T Consensus 50 ~~~g~~w~~~~~~~~~~~l~~~-p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~sfr~ds~~~~~~pl~~~e~~ 128 (258)
T KOG4566|consen 50 DSSGHYWGLETANEAELCLGQE-PRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSSFRLDSSHRHTPPLISFEDV 128 (258)
T ss_pred ccCCcccccccchhHHHhhcCC-CccceeeecCcCccccceeEeeeccCCCCccccccccceecccccccCCCcccChhH
Confidence 3444555555555554444444 799999999999999999999999988899998877755442 22 479999
Q ss_pred HHHHHhhhcCC
Q psy8516 204 TQLIEHYKRNP 214 (451)
Q Consensus 204 ~~Li~~y~~~~ 214 (451)
..++++|....
T Consensus 129 ~~~~~~y~~~~ 139 (258)
T KOG4566|consen 129 EVLIHHYRQSR 139 (258)
T ss_pred HHHHHhhhhhh
Confidence 99999994444
No 57
>KOG1856|consensus
Probab=90.95 E-value=0.5 Score=51.44 Aligned_cols=81 Identities=22% Similarity=0.435 Sum_probs=62.6
Q ss_pred CCCccCCCCCHHHHHHHHhcCC-CCCe---EEEeecCCCCCceEEEEEECCeEEEEEEEeeCCeEEecCCcccCCHHHHH
Q psy8516 3 SRRWFHPSISGVEAEVLLLERG-YDGS---FLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELV 78 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~-~~G~---flvR~s~~~~~~~~ls~~~~~~~~h~~I~~~~~~~~~~~~~~f~sl~~Lv 78 (451)
++.+|.+ =++++.|++|.... .++. |.+..|...||.|.|+++.++.++|--|.-.+.+|.+ .+..|.||.+|+
T Consensus 1204 nhkyf~~-Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g~~~-rg~~f~tld~L~ 1281 (1299)
T KOG1856|consen 1204 NHKYFFT-GTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEGFRF-RGQNFGTLDELC 1281 (1299)
T ss_pred hhhHhhc-CCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccceEE-ecccchhHHHHH
Confidence 4555652 34889999998554 3444 4455787889999999999999999777767777766 578899999999
Q ss_pred HHHHhcc
Q psy8516 79 QFYMENQ 85 (451)
Q Consensus 79 ~~y~~~~ 85 (451)
.|+..+-
T Consensus 1282 ~~FK~h~ 1288 (1299)
T KOG1856|consen 1282 RWFKRHY 1288 (1299)
T ss_pred HHHHHHh
Confidence 9998763
No 58
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=90.83 E-value=0.39 Score=41.49 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=31.6
Q ss_pred ceEEEeCCCCcccHHHHHhHhhcccceEEEeecc
Q psy8516 326 KSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTK 359 (451)
Q Consensus 326 ~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~ 359 (451)
.+||++-+|++.+..+|....-+.++..||.+|.
T Consensus 16 ~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~ 49 (166)
T PTZ00242 16 FKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCG 49 (166)
T ss_pred eEEEEecCCCcccHHHHHHHHHhCCCeEEEecCC
Confidence 5899999999999999999999999999999864
No 59
>KOG2836|consensus
Probab=84.68 E-value=3.7 Score=33.44 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=57.2
Q ss_pred CCceEEEeCCCCcccHHHHHhHhhcccceEEEeeccccccCcccceeecCCCCCceEEeeEEEEEeeeeeecCEEEEEEE
Q psy8516 324 GGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 403 (451)
Q Consensus 324 ~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~~~e~~~~~c~~YwP~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 403 (451)
..-+|++|--|...|+..|-.-.-.+++.++|-.|... | + +..
T Consensus 15 ~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~T---------Y----------d------------------t~~ 57 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT---------Y----------D------------------TTP 57 (173)
T ss_pred cceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc---------c----------C------------------Cch
Confidence 34689999999999999999999999999999988521 1 0 001
Q ss_pred EEeCCCCCEEEEEEeeCCCC-CCCCCCChHHHHHHHHHHHhhhccccC
Q psy8516 404 VSKGSESPRKIYHYHFQAWP-DHGVPSDPGCVLNFLYEVNTRQDIHAG 450 (451)
Q Consensus 404 v~~~~~~~~~v~~~~~~~Wp-~~~~P~~~~~~l~~~~~v~~~~~~~~~ 450 (451)
+... . ++..+|| |.|.|+..+-+=+-+..|....++.+|
T Consensus 58 lek~---G-----I~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~ 97 (173)
T KOG2836|consen 58 LEKE---G-----ITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPG 97 (173)
T ss_pred hhhc---C-----ceEeecccccCCCCchHHHHHHHHHHHHHHhhCCC
Confidence 1111 1 2334688 788887776666666777776666655
No 60
>KOG3508|consensus
Probab=83.11 E-value=0.061 Score=57.31 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=45.3
Q ss_pred CCccCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEEC-CeEEEEEEEe
Q psy8516 4 RRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLN-GEVTHIKIQN 58 (451)
Q Consensus 4 ~~wy~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~-~~~~h~~I~~ 58 (451)
..||||++.|.-|+..+......|.++||++...++.+++++-.. +.+-|+++..
T Consensus 81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s 136 (932)
T KOG3508|consen 81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTIS 136 (932)
T ss_pred hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhh
Confidence 369999999999999988877789999999999999998886532 3377777754
No 61
>KOG1785|consensus
Probab=75.02 E-value=3.6 Score=39.68 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=41.6
Q ss_pred CCCccCCCCCHHHHHHHHhcCC-CCCeEEEeecCCCCCceEEEEEEC-CeE
Q psy8516 3 SRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLN-GEV 51 (451)
Q Consensus 3 ~~~wy~g~isr~~Ae~lL~~~~-~~G~flvR~s~~~~~~~~ls~~~~-~~~ 51 (451)
.+|=|...++.+|..+.|.... .+|+|+.|.|.++.|++++-+... |.+
T Consensus 255 tHPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~dG~I 305 (563)
T KOG1785|consen 255 THPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTADGNI 305 (563)
T ss_pred cCCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcCCCce
Confidence 3677888999999999998886 799999999999999999887753 444
No 62
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.22 E-value=4 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEeeCCCCCCCCCCChHHHHHHHH
Q psy8516 416 HYHFQAWPDHGVPSDPGCVLNFLY 439 (451)
Q Consensus 416 ~~~~~~Wp~~~~P~~~~~~l~~~~ 439 (451)
+|++.+||-.|+|.-.+++|+.|.
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrIt 25 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRIT 25 (45)
T ss_pred eeeecCccccCCchhhHHHHHHHH
Confidence 588999999999988899988764
No 63
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=71.01 E-value=15 Score=26.84 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.6
Q ss_pred CCceEEEecCCCCCCCeEEEEEeCC
Q psy8516 154 KNGSFLVRESQSKPGDFVLSVRTDD 178 (451)
Q Consensus 154 ~~G~flvR~s~~~~~~~~ls~~~~~ 178 (451)
++|+|+.|-|..+-|+.++-++..+
T Consensus 24 kpGsYiFRlSCTrLGQWAIGyV~~d 48 (86)
T PF02762_consen 24 KPGSYIFRLSCTRLGQWAIGYVTQD 48 (86)
T ss_dssp STTEEEEEEESSSTTSEEEEEEETT
T ss_pred CcccEEEeeccccccceeEEEEcCC
Confidence 7999999999999999999987754
No 64
>KOG3667|consensus
Probab=69.61 E-value=7.2 Score=40.65 Aligned_cols=50 Identities=26% Similarity=0.336 Sum_probs=39.7
Q ss_pred cCCCCCHHHHHHHHhcCCCCCeEEEeecCCCCCceEEEEEEC-CeEEEEEEE
Q psy8516 7 FHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLN-GEVTHIKIQ 57 (451)
Q Consensus 7 y~g~isr~~Ae~lL~~~~~~G~flvR~s~~~~~~~~ls~~~~-~~~~h~~I~ 57 (451)
-.|.++++.+.++|...+ +|+|++|-|++.-|..++..... ....|+.|.
T Consensus 566 Imgfinkq~~~~ll~~~~-~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 566 IMGFINKQQERALLMTKP-DGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred eeeecchhhhhhhhhcCC-CCCceeeeeccccCceeEEecccccccceeEec
Confidence 368899999999999888 99999999988878777766543 333577776
No 65
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=42.68 E-value=31 Score=26.24 Aligned_cols=29 Identities=38% Similarity=0.870 Sum_probs=22.4
Q ss_pred hcCCCCCeEEEeecCCCCCceEEEEEECCe
Q psy8516 21 LERGYDGSFLVRPSRSNPGDFTLSVRLNGE 50 (451)
Q Consensus 21 ~~~~~~G~flvR~s~~~~~~~~ls~~~~~~ 50 (451)
.+.. +|+|.|+..-...|.|.|+++.+++
T Consensus 51 ~d~~-dGty~v~y~P~~~G~~~i~V~~~g~ 79 (93)
T smart00557 51 KDNG-DGTYTVSYTPTEPGDYTVTVKFGGE 79 (93)
T ss_pred EeCC-CCEEEEEEEeCCCEeEEEEEEECCE
Confidence 3444 8899999887788888888888763
No 66
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=37.40 E-value=7.9 Score=36.92 Aligned_cols=42 Identities=10% Similarity=0.324 Sum_probs=32.9
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEec
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLK 226 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~ 226 (451)
-++|||++| ++++..|..++-+++.+.....+...+.+..||
T Consensus 223 PIVVHCSaG---vGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR 264 (298)
T PHA02740 223 PIIIDCIDG---ISSSAVFCVFDICATEFDKTGMLSIANALKKVR 264 (298)
T ss_pred CEEEECCCC---CchhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 578999999 889999999999999988777665554444444
No 67
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=36.78 E-value=39 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.643 Sum_probs=23.3
Q ss_pred CCceEEEecCCCCCCCeEEEEEeCCe
Q psy8516 154 KNGSFLVRESQSKPGDFVLSVRTDDK 179 (451)
Q Consensus 154 ~~G~flvR~s~~~~~~~~ls~~~~~~ 179 (451)
.+|+|.|+-....+|.|.+++..++.
T Consensus 54 ~dGty~v~y~P~~~G~~~i~V~~~g~ 79 (93)
T smart00557 54 GDGTYTVSYTPTEPGDYTVTVKFGGE 79 (93)
T ss_pred CCCEEEEEEEeCCCEeEEEEEEECCE
Confidence 69999999999999999999998874
No 68
>KOG0791|consensus
Probab=34.95 E-value=18 Score=34.97 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=35.0
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEeccc
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 228 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~p 228 (451)
-+.|+|+.| ++++..|..++.|+.+-.....+++.+.+..|+..
T Consensus 289 p~iVhCSAG---VgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 289 PTIVHCSAG---VGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred ceeEEeecc---cccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 467889988 88888999999999988887777777766666543
No 69
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=31.13 E-value=12 Score=35.72 Aligned_cols=35 Identities=14% Similarity=0.407 Sum_probs=28.4
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCccccc
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETS 219 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~ 219 (451)
-++|||++| ++++..|..++-+++.+.....+.+.
T Consensus 231 PIvVHCsaG---vGRTGtF~aid~~i~~~~~~~~v~v~ 265 (303)
T PHA02742 231 PILVHCSAG---LDRAGAFCAIDICISKYNERAIIPLL 265 (303)
T ss_pred CeEEECCCC---CchhHHHHHHHHHHHHHHhcCCCCHH
Confidence 478999999 88999999999999988766544433
No 70
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=29.05 E-value=1e+02 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=18.6
Q ss_pred ecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 394 TTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 394 ~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
...-..+++.|.+..+..-+| .||||.
T Consensus 16 N~gr~~~~i~V~NtGDRPIQVGSHfHF~ 43 (106)
T COG0832 16 NAGRPTVTIEVANTGDRPIQVGSHFHFF 43 (106)
T ss_pred eCCCcceEEEEeecCCCceEeecceeeh
Confidence 344556677788876556666 799995
No 71
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=28.89 E-value=58 Score=24.84 Aligned_cols=25 Identities=36% Similarity=0.874 Sum_probs=19.1
Q ss_pred CCeEEEeecCCCCCceEEEEEECCe
Q psy8516 26 DGSFLVRPSRSNPGDFTLSVRLNGE 50 (451)
Q Consensus 26 ~G~flvR~s~~~~~~~~ls~~~~~~ 50 (451)
+|+|.|+..-..+|.|.|+|++++.
T Consensus 69 ~G~y~v~y~p~~~G~y~i~V~~~g~ 93 (101)
T PF00630_consen 69 DGTYTVSYTPTEPGKYKISVKINGQ 93 (101)
T ss_dssp SSEEEEEEEESSSEEEEEEEEESSE
T ss_pred CCEEEEEEEeCccEeEEEEEEECCE
Confidence 7888888777777888888887663
No 72
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.52 E-value=66 Score=24.94 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=20.1
Q ss_pred eecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 393 VTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 393 ~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
........+|.|++..+..-.| .||||.
T Consensus 15 ln~gr~~~~l~V~NtGDRPIQVGSHyHF~ 43 (101)
T TIGR00192 15 INEGRKTVSVKVKNTGDRPIQVGSHFHFF 43 (101)
T ss_pred eCCCCcEEEEEEEeCCCcceEEccccchh
Confidence 3455666788999876555556 799995
No 73
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.43 E-value=69 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred eecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 393 VTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 393 ~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
........+|.|++..+..-.| .||||.
T Consensus 15 lN~gr~~~~l~V~NtGDRpIQVGSH~HF~ 43 (101)
T cd00407 15 LNAGREAVTLKVKNTGDRPIQVGSHYHFF 43 (101)
T ss_pred eCCCCCEEEEEEEeCCCcceEEccccchh
Confidence 3455667788999876555555 799995
No 74
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=28.07 E-value=62 Score=29.64 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=32.3
Q ss_pred CceEEEeCCCCcccHHHHHhHhhcccceEEEeecc
Q psy8516 325 GKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTK 359 (451)
Q Consensus 325 ~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv~l~~ 359 (451)
.-+||++-+|+..++.+|..-....++..||.+|.
T Consensus 91 ~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE 125 (241)
T PTZ00393 91 KIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCE 125 (241)
T ss_pred ceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 45899999999999999999999999999999875
No 75
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=27.98 E-value=18 Score=34.90 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=31.4
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEe
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHL 225 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L 225 (451)
.++|||+.| ++++..|..++-+++.......+++...+..|
T Consensus 249 PIvVHCsaG---vGRTGtfcaid~~l~~l~~~~~vdv~~~V~~l 289 (323)
T PHA02746 249 PIVVHCSAG---IGRAGTFCAIDNALEQLEKEKEVCLGEIVLKI 289 (323)
T ss_pred CEEEEcCCC---CCcchhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 578999999 88999999999999988777655544433333
No 76
>PRK13203 ureB urease subunit beta; Reviewed
Probab=27.69 E-value=67 Score=24.95 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=20.2
Q ss_pred eecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 393 VTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 393 ~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
........+|.|++..+..-.| .||||.
T Consensus 15 ln~gr~~~~l~V~NtGDRPIQVGSH~HF~ 43 (102)
T PRK13203 15 LNAGRETVTLTVANTGDRPIQVGSHYHFF 43 (102)
T ss_pred eCCCCCEEEEEEEeCCCCceEEccccchh
Confidence 3455666788999876555556 799995
No 77
>PHA02738 hypothetical protein; Provisional
Probab=27.49 E-value=19 Score=34.67 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=34.1
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCcccccceeEEecc
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQ 227 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~g~~~~L~~ 227 (451)
-++|||++| ++++..|..++-+++.+.....+.+...+..|+.
T Consensus 229 PIVVHCs~G---iGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~ 271 (320)
T PHA02738 229 PIVVHCNAG---LGRTPCYCVVDISISRFDACATVSIPSIVSSIRN 271 (320)
T ss_pred CeEEEcCCC---CChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHh
Confidence 578999999 8899999999999999988776665555544443
No 78
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.82 E-value=33 Score=32.84 Aligned_cols=38 Identities=16% Similarity=0.412 Sum_probs=25.7
Q ss_pred eeEEeecCCCCceEEEeCCCCcccHHHHHhHhhcccceEEE
Q psy8516 315 NANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIV 355 (451)
Q Consensus 315 nAs~v~~~~~~~~~I~tQ~P~~~t~~dFW~mv~~~~~~~Iv 355 (451)
|+-||+....+.+|----| ++...-|+||||++|..+-
T Consensus 135 n~vyisLlenpErfTGY~g---~hSa~IWr~Iyeqncfd~~ 172 (425)
T COG5061 135 NDVYISLLENPERFTGYKG---NHSAEIWRKIYEQNCFDTL 172 (425)
T ss_pred CcEEeehhcChHhhcCCCC---CchHHHHHHHHHhhccccC
Confidence 4666666555555543333 3467899999999997764
No 79
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=26.74 E-value=49 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.1
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHh
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEH 209 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~ 209 (451)
.+.|||++| +|+++.|..++.|+..
T Consensus 220 piiVHCSAG---vGRTGTFIalD~ll~~ 244 (302)
T COG5599 220 PIIVHCSAG---VGRTGTFIALDILLRM 244 (302)
T ss_pred CEEEEeccC---CCCcceeeeHHHHHhc
Confidence 367899999 9999999999999875
No 80
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=26.60 E-value=20 Score=34.50 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=28.5
Q ss_pred eEEEEEeCCeEEecCCcccccHHHHHHhhhcCCccccc
Q psy8516 182 HVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETS 219 (451)
Q Consensus 182 h~~I~~~~~~~~~~~~~~F~sl~~Li~~y~~~~lv~~~ 219 (451)
.++|||++| ++++..|..++-+++.......+.+.
T Consensus 231 PIvVHCsaG---vGRtGtfcaidi~i~~l~~~~~v~v~ 265 (312)
T PHA02747 231 PIVVHCSDG---VGKTGIFCAVDICLNQLVKRKAICLA 265 (312)
T ss_pred CEEEEecCC---CcchhHHHHHHHHHHHHHhcCCCCHH
Confidence 578999999 88999999999999888766544433
No 81
>KOG1785|consensus
Probab=24.45 E-value=1.2e+02 Score=29.82 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.4
Q ss_pred chHHHHHHHHhc-CCCceEEEecCCCCCCCeEEEEEeC
Q psy8516 141 QSKEAEQLILQK-GKNGSFLVRESQSKPGDFVLSVRTD 177 (451)
Q Consensus 141 ~~~~a~~~l~~~-~~~G~flvR~s~~~~~~~~ls~~~~ 177 (451)
-.++....|.+. .++|+|+.|-|-.+.|++++-++..
T Consensus 264 TYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~ 301 (563)
T KOG1785|consen 264 TYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTA 301 (563)
T ss_pred eHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcC
Confidence 355566666654 4899999999999999999998764
No 82
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=23.96 E-value=1.9e+02 Score=22.78 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=25.0
Q ss_pred eeeecCEEEEEEEEEeCCCCCEEEEEEeeCCC
Q psy8516 391 ESVTTDYILREFLVSKGSESPRKIYHYHFQAW 422 (451)
Q Consensus 391 ~~~~~~~~~~~l~v~~~~~~~~~v~~~~~~~W 422 (451)
.....+..++.|.|++.++..|.+..+-|.-|
T Consensus 58 V~~~~~vEi~~l~l~N~~~~~r~L~vtsy~E~ 89 (110)
T PF06165_consen 58 VPPDDPVEIRRLRLTNTSNRPRRLSVTSYAEW 89 (110)
T ss_dssp --TTSSEEEEEEEEEE-SSS-EEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEECcCCcEEEEEEEEEEE
Confidence 34567899999999998888999999999877
No 83
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.94 E-value=1e+02 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=26.0
Q ss_pred eeEEEEEeeeeeecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 382 GAVCVNNMYESVTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 382 ~~~~v~~~~~~~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
|.+.+.-............+|.|++.....-.| .||||.
T Consensus 27 Gei~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~ 66 (159)
T PRK13204 27 GGYVLAKDPIEINQGRPRTTLTVRNTGDRPIQIGSHFHFF 66 (159)
T ss_pred CeEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchh
Confidence 444443333445667777899999977555556 799995
No 84
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.81 E-value=98 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=20.1
Q ss_pred eecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 393 VTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 393 ~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
........+|.|++.....-+| .||||.
T Consensus 15 lN~gr~~~~l~V~NtGDRPIQVGSHyHF~ 43 (136)
T PRK13201 15 INNHHPETVIEVENTGDRPIQVGSHFHFY 43 (136)
T ss_pred eCCCCCEEEEEEEeCCCcceEeccccchh
Confidence 3455666788999876555556 799995
No 85
>KOG1147|consensus
Probab=21.76 E-value=12 Score=37.89 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.2
Q ss_pred ceEEEeCCCCcccHHHHHhHhhcccceE
Q psy8516 326 KSYIATQGCLPSTMNDFWSMVWQENVRV 353 (451)
Q Consensus 326 ~~~I~tQ~P~~~t~~dFW~mv~~~~~~~ 353 (451)
+.||++|||..+.+.-=|.-||.-|=++
T Consensus 475 kqfIl~QG~Sk~v~~meWdkiWAfNKKv 502 (712)
T KOG1147|consen 475 KQFILAQGPSKNVVTMEWDKIWAFNKKV 502 (712)
T ss_pred HHHHHHhCCccceeeeehHhhhhhcccc
Confidence 5799999999999988999999877443
No 86
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=21.48 E-value=73 Score=24.27 Aligned_cols=26 Identities=23% Similarity=0.640 Sum_probs=22.5
Q ss_pred CCceEEEecCCCCCCCeEEEEEeCCe
Q psy8516 154 KNGSFLVRESQSKPGDFVLSVRTDDK 179 (451)
Q Consensus 154 ~~G~flvR~s~~~~~~~~ls~~~~~~ 179 (451)
.+|.|.|+-....+|.|.|++..++.
T Consensus 68 ~~G~y~v~y~p~~~G~y~i~V~~~g~ 93 (101)
T PF00630_consen 68 GDGTYTVSYTPTEPGKYKISVKINGQ 93 (101)
T ss_dssp SSSEEEEEEEESSSEEEEEEEEESSE
T ss_pred CCCEEEEEEEeCccEeEEEEEEECCE
Confidence 58999999888889999999988764
No 87
>PRK13205 ureB urease subunit beta; Reviewed
Probab=21.14 E-value=1e+02 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=20.2
Q ss_pred eecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 393 VTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 393 ~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
........+|.|++.....-.| .||||.
T Consensus 15 lN~GR~~i~L~V~NtGDRPIQVGSHyHF~ 43 (162)
T PRK13205 15 GNVGREAKTIEIINTGDRPVQIGSHFHFA 43 (162)
T ss_pred eCCCCcEEEEEEEeCCCCceEeccccchh
Confidence 3455666788999877555556 799995
No 88
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.69 E-value=1.2e+02 Score=23.73 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=19.0
Q ss_pred ecC-EEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 394 TTD-YILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 394 ~~~-~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
... ....+|.|++..+..-.| .||||.
T Consensus 16 n~grr~~~~l~V~NtGDRPIQVGSHyHF~ 44 (104)
T PRK13202 16 NAAALSRLQMRIINAGDRPVQVGSHVHLP 44 (104)
T ss_pred CCCCCceEEEEEEeCCCCceEEccccchh
Confidence 344 356688999877656666 799995
No 89
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=20.33 E-value=50 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=18.8
Q ss_pred eeecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 392 SVTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 392 ~~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
.........+|.|++..+..-.| .||||.
T Consensus 13 ~lN~gr~~~~l~V~N~GDRPIQVGSH~HF~ 42 (100)
T PF00699_consen 13 ELNAGRERITLEVTNTGDRPIQVGSHYHFF 42 (100)
T ss_dssp ETTTTSEEEEEEEEE-SSS-EEEETTS-GG
T ss_pred EecCCCcEEEEEEEeCCCcceEEccccCHH
Confidence 34566777889999977555556 689885
No 90
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.14 E-value=1.3e+02 Score=25.31 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=26.5
Q ss_pred EeeEEEEEeeeeeecCEEEEEEEEEeCCCCCEEE-EEEeeC
Q psy8516 381 YGAVCVNNMYESVTTDYILREFLVSKGSESPRKI-YHYHFQ 420 (451)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~~~~l~v~~~~~~~~~v-~~~~~~ 420 (451)
-|.+.+.-............+|.|++..+..-.| .||||.
T Consensus 31 pGei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~ 71 (158)
T PRK13198 31 LGGLVLAETPITFNENKPVTKVKVRNTGDRPIQVGSHFHFF 71 (158)
T ss_pred CceEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchh
Confidence 3444443333445667778899999977555556 799995
Done!