RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8516
(451 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 245 bits (627), Expect = 3e-79
Identities = 79/165 (47%), Positives = 109/165 (66%), Gaps = 3/165 (1%)
Query: 285 KNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWS 344
KNRYK+ILP+DHTRVKLK D+ G++YINA+YI + K+YIATQG LP+T+ DFW
Sbjct: 2 KNRYKDILPYDHTRVKLKPDDD--EGSDYINASYIDGYNPPKAYIATQGPLPNTVEDFWR 59
Query: 345 MVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLV 404
MVW++ V VIVM T+ +E+G+ KCA+YWP++ S TYG + V + E DY +R +
Sbjct: 60 MVWEQKVPVIVMLTELVEKGREKCAQYWPEEEGSLTYGDITVTLVSEEKLDDYTVRTLKL 119
Query: 405 S-KGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIH 448
S G+ R + H+ + WPDHGVP P +L+ L +V Q
Sbjct: 120 SNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQP 164
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 240 bits (615), Expect = 4e-77
Identities = 88/199 (44%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 255 GFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYI 314
G EEFE L + + + +NR+KNRYK++LP+DHTRVKLK G++YI
Sbjct: 1 GLEEEFEKLDRLKP-DDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPG--EGSDYI 57
Query: 315 NANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPD 374
NA+YI +G K+YIATQG LPST+ DFW MVW++ V VIVM T+ +E+G+ KCA+YWPD
Sbjct: 58 NASYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEQKVTVIVMLTELVEKGREKCAQYWPD 117
Query: 375 D-HQSKTYGAVCVNNMYESVTTDYILREFLVSKGSES-PRKIYHYHFQAWPDHGVPSDPG 432
+ + TYG + V DY +R V+ S R + HYH+ WPDHGVP P
Sbjct: 118 EEGEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPE 177
Query: 433 CVLNFLYEVNTRQDIHAGN 451
+L+ + V Q G
Sbjct: 178 SILDLIRAVRKSQSTSTGP 196
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 221 bits (564), Expect = 6e-70
Identities = 75/167 (44%), Positives = 103/167 (61%), Gaps = 7/167 (4%)
Query: 282 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 341
N KNRYK+ILP+DHTRVKL +YINA+YI +++IATQG LP+T+ D
Sbjct: 1 NLEKNRYKDILPYDHTRVKLTPGGPS----DYINASYIDGYRKPRAFIATQGPLPNTIED 56
Query: 342 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPD-DHQSKTYGAVCVNNM-YESVTTDYIL 399
FW MVW++ V IVM T+ E+G+ KC +YWP+ + S TYG + V + E DY +
Sbjct: 57 FWRMVWEQKVTTIVMLTELEEKGREKCDQYWPEEEEGSLTYGDISVTLVKEEEEEDDYTV 116
Query: 400 REFLVSK-GSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQ 445
R F + GSE R + H+H+ WPDHGVP P +L+ + +V Q
Sbjct: 117 RTFELKNGGSEETRTVTHFHYTGWPDHGVPESPKSLLDLIRKVRKSQ 163
>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2)
domain found in SH2 domain Phosphatases (SHP) proteins.
The SH2 domain phosphatases (SHP-1, SHP-2/Syp,
Drosophila corkscrew (csw), and Caenorhabditis elegans
Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic
signaling enzymes. They are both targeted and regulated
by interactions of their SH2 domains with
phosphotyrosine docking sites. These proteins contain
two SH2 domains (N-SH2, C-SH2) followed by a tyrosine
phosphatase (PTP) domain, and a C-terminal extension.
Shp1 and Shp2 have two tyrosyl phosphorylation sites in
their C-tails, which are phosphorylated differentially
by receptor and nonreceptor PTKs. Csw retains the
proximal tyrosine and Ptp-2 lacks both sites.
Shp-binding proteins include receptors, scaffolding
adapters, and inhibitory receptors. Some of these bind
both Shp1 and Shp2 while others bind only one. Most
proteins that bind a Shp SH2 domain contain one or more
immuno-receptor tyrosine-based inhibitory motifs
(ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the
catalytic domain and keeps the enzyme in the inactive
conformation, and is thus believed to regulate the
phosphatase activity of SHP-1. Its C-SH2 domain is
thought to be involved in searching for phosphotyrosine
activators. The SHP2 N-SH2 domain is a conformational
switch; it either binds and inhibits the phosphatase, or
it binds phosphoproteins and activates the enzyme. The
C-SH2 domain contributes binding energy and specificity,
but it does not have a direct role in activation. Csw
SH2 domain function is essential, but either SH2 domain
can fulfill this requirement. The role of the csw SH2
domains during Sevenless receptor tyrosine kinase (SEV)
signaling is to bind Daughter of Sevenless rather than
activated SEV. Ptp-2 acts in oocytes downstream of
sheath/oocyte gap junctions to promote major sperm
protein (MSP)-induced MAP Kinase (MPK-1)
phosphorylation. Ptp-2 functions in the oocyte
cytoplasm, not at the cell surface to inhibit multiple
RasGAPs, resulting in sustained Ras activation. It is
thought that MSP triggers PTP-2/Ras activation and ROS
production to stimulate MPK-1 activity essential for
oocyte maturation and that secreted MSP domains and
Cu/Zn superoxide dismutases function antagonistically to
control ROS and MAPK signaling. In general SH2 domains
are involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 99
Score = 185 bits (471), Expect = 6e-58
Identities = 85/122 (69%), Positives = 92/122 (75%), Gaps = 24/122 (19%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
RWFHG LSGKEAE+L+L+KGK GSFLVRESQSK PGDF
Sbjct: 1 RWFHGHLSGKEAEKLLLEKGKPGSFLVRESQSK-----------------------PGDF 37
Query: 171 VLSVRTDD-KVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPF 229
VLSVRTDD KVTH+MIRCQ KYDVGGGE+FDSLT L+EHYK+NPMVETSGTVVHLKQP
Sbjct: 38 VLSVRTDDDKVTHIMIRCQGGKYDVGGGEEFDSLTDLVEHYKKNPMVETSGTVVHLKQPL 97
Query: 230 NA 231
NA
Sbjct: 98 NA 99
Score = 112 bits (283), Expect = 2e-30
Identities = 52/99 (52%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLN-GEVTHIKIQNTGDCY 63
RWFH +SG EAE LLLE+G GSFLVR S+S PGDF LSVR + +VTHI I+ G Y
Sbjct: 1 RWFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIRCQGGKY 60
Query: 64 DLYGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
D+ GGE+F +L++LV+ Y +N + + + V+ LK PL
Sbjct: 61 DVGGGEEFDSLTDLVEHYKKN--PMVETSGTVVHLKQPL 97
>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2)
domain found in SH2 domain Phosphatases (SHP) proteins.
The SH2 domain phosphatases (SHP-1, SHP-2/Syp,
Drosophila corkscrew (csw), and Caenorhabditis elegans
Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic
signaling enzymes. They are both targeted and regulated
by interactions of their SH2 domains with
phosphotyrosine docking sites. These proteins contain
two SH2 domains (N-SH2, C-SH2) followed by a tyrosine
phosphatase (PTP) domain, and a C-terminal extension.
Shp1 and Shp2 have two tyrosyl phosphorylation sites in
their C-tails, which are phosphorylated differentially
by receptor and nonreceptor PTKs. Csw retains the
proximal tyrosine and Ptp-2 lacks both sites.
Shp-binding proteins include receptors, scaffolding
adapters, and inhibitory receptors. Some of these bind
both Shp1 and Shp2 while others bind only one. Most
proteins that bind a Shp SH2 domain contain one or more
immuno-receptor tyrosine-based inhibitory motifs
(ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the
catalytic domain and keeps the enzyme in the inactive
conformation, and is thus believed to regulate the
phosphatase activity of SHP-1. Its C-SH2 domain is
thought to be involved in searching for phosphotyrosine
activators. The SHP2 N-SH2 domain is a conformational
switch; it either binds and inhibits the phosphatase, or
it binds phosphoproteins and activates the enzyme. The
C-SH2 domain contributes binding energy and specificity,
but it does not have a direct role in activation. Csw
SH2 domain function is essential, but either SH2 domain
can fulfill this requirement. The role of the csw SH2
domains during Sevenless receptor tyrosine kinase (SEV)
signaling is to bind Daughter of Sevenless rather than
activated SEV. Ptp-2 acts in oocytes downstream of
sheath/oocyte gap junctions to promote major sperm
protein (MSP)-induced MAP Kinase (MPK-1)
phosphorylation. Ptp-2 functions in the oocyte
cytoplasm, not at the cell surface to inhibit multiple
RasGAPs, resulting in sustained Ras activation. It is
thought that MSP triggers PTP-2/Ras activation and ROS
production to stimulate MPK-1 activity essential for
oocyte maturation and that secreted MSP domains and
Cu/Zn superoxide dismutases function antagonistically to
control ROS and MAPK signaling. In general SH2 domains
are involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 99
Score = 185 bits (471), Expect = 7e-58
Identities = 78/98 (79%), Positives = 85/98 (86%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
RWFHP ISG+EAE LL RG DGSFL RPS+SNPGDFTLSVR EVTHIKIQNTGD YD
Sbjct: 1 RWFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKIQNTGDYYD 60
Query: 65 LYGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
LYGGEKFATLSELVQ+YME GQL+++N +VIELKYPL
Sbjct: 61 LYGGEKFATLSELVQYYMEQHGQLREKNGDVIELKYPL 98
Score = 95.2 bits (237), Expect = 6e-24
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 135 FLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDV 194
+ EAE L+ +G +GSFL R S+S PGDF LSVR D+VTH+ I+ + YD+
Sbjct: 2 WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKIQNTGDYYDL 61
Query: 195 GGGEQFDSLTQLIEHYKRNP--MVETSGTVVHLKQPFN 230
GGE+F +L++L+++Y + E +G V+ LK P N
Sbjct: 62 YGGEKFATLSELVQYYMEQHGQLREKNGDVIELKYPLN 99
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 130 bits (329), Expect = 1e-34
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 277 GQKLDNRN--KNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGC 334
L + N +NRY NI+P++HTRV LK +YINA+YI++ G YIATQG
Sbjct: 46 DTSLSSTNYARNRYSNIVPYEHTRVHLKYGKS---INDYINASYIKTPRG--KYIATQGP 100
Query: 335 LPSTMNDFWSMVWQ--ENVRVIVMTTKEMERGKNKCAKYWPDDHQSKT-YGAVCVNNMYE 391
P T++DFW MVW N VIVM T E + KC +YWP + G +
Sbjct: 101 KPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKY 160
Query: 392 SVTTD--YILREFLVSKGSESPRKIYHYHFQAWPDHGVPS 429
+ D + F ++ + P+KI+H+ + W D VP
Sbjct: 161 ELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPD 200
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 130 bits (327), Expect = 3e-34
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 5/170 (2%)
Query: 282 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 341
NR NRY + + FDH+RV L + +YINANY+ + K +I Q T D
Sbjct: 49 NRKLNRYLDAVCFDHSRVILP---AERNRGDYINANYVDGFEYKKKFICGQAPTRQTCYD 105
Query: 342 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSK-TYGAVCVNNMYESVTTDYILR 400
F+ M+W E+V++IVM K+ E G+ KC YW D Q +G + Y+
Sbjct: 106 FYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVETHPHYVKS 165
Query: 401 EFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQ-DIHA 449
L++ G+ + + + H++F AWPDH VP + LNF+ EV Q ++
Sbjct: 166 TLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQ 215
>gnl|CDD|215658 pfam00017, SH2, SH2 domain.
Length = 77
Score = 110 bits (278), Expect = 6e-30
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC-YD 64
W+H IS EAE LLL DG+FLVR S S PGD+TLSVR +G V H +IQ+ + Y
Sbjct: 1 WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYY 60
Query: 65 LYGGEKFATLSELVQFY 81
+ GG F +L ELV+ Y
Sbjct: 61 ISGGVTFNSLPELVEHY 77
Score = 98.4 bits (246), Expect = 2e-25
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 24/100 (24%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG++S +EAE+L+L +G+FLVRES +SKPGD+
Sbjct: 1 WYHGKISREEAERLLLNPKPDGTFLVRES-----------------------ESKPGDYT 37
Query: 172 LSVRTDDKVTHVMIRCQA-EKYDVGGGEQFDSLTQLIEHY 210
LSVR D +V H I+ Y + GG F+SL +L+EHY
Sbjct: 38 LSVRDDGRVKHYRIQSLDNGGYYISGGVTFNSLPELVEHY 77
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 113 bits (284), Expect = 2e-28
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 272 FTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIAT 331
F+ E +L N K RY + FD RV LK D G ++INA+Y+ + +I T
Sbjct: 42 FSCNESLELKNMKKCRYPDAPCFDRNRVILKIEDG---GDDFINASYVDGHNAKGRFICT 98
Query: 332 QGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYW-PDDHQSKTYGAVCVNNMY 390
Q L T DFW ++Q+ VRVIVM TK ME GK C YW P + T+G +
Sbjct: 99 QAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKK 158
Query: 391 ESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQ 445
+Y + L + + I H+ ++ WP G+P DP L+F+ V
Sbjct: 159 IKSFRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREAD 214
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 107 bits (267), Expect = 6e-26
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Query: 278 QKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPS 337
+K +N+ KNRY +I +DH RV L ++YI+AN+I + K +IATQG
Sbjct: 47 EKPENQPKNRYWDIPCWDHNRVILDS--GGGSTSDYIHANWIDGFEDDKKFIATQGPFAE 104
Query: 338 TMNDFWSMVWQENVRVIVM-TTKEMERGKNKCAKYW-PDDHQSKTYGAVCVNNMYESVTT 395
T DFW VWQE+ +IVM T + G+ KC +YW ++ + + + SV
Sbjct: 105 TCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETLKTSVRA 164
Query: 396 DYILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIHAGN 451
YIL + K + RKI H+ W + PSD + F+ ++ +
Sbjct: 165 KYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKL 221
>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains. Src homology 2 domains
bind phosphotyrosine-containing polypeptides via 2
surface pockets. Specificity is provided via interaction
with residues that are distinct from the
phosphotyrosine. Only a single occurrence of a SH2
domain has been found in S. cerevisiae.
Length = 84
Score = 99.6 bits (249), Expect = 1e-25
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 25/106 (23%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
+ W+HG +S +EAE+L L+ +G FLVR+S+S PGD
Sbjct: 1 QPWYHGFISREEAEKL------------------------LKNEGDGDFLVRDSESSPGD 36
Query: 170 FVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFDSLTQLIEHYKRNP 214
+VLSVR KV H IR + K+ + GG +F SL +L+EHY++N
Sbjct: 37 YVLSVRVKGKVKHYRIRRNEDGKFYLEGGRKFPSLVELVEHYQKNS 82
Score = 96.1 bits (240), Expect = 2e-24
Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC-YD 64
W+H IS EAE LL G DG FLVR S S+PGD+ LSVR+ G+V H +I+ D +
Sbjct: 3 WYHGFISREEAEKLLKNEG-DGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKFY 61
Query: 65 LYGGEKFATLSELVQFYMEN 84
L GG KF +L ELV+ Y +N
Sbjct: 62 LEGGRKFPSLVELVEHYQKN 81
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 92.8 bits (230), Expect = 7e-21
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 29/222 (13%)
Query: 249 ENSSKAGFWE--EFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRV------- 299
+ ++ A F E E + + T K +N KNR+ +I +DH+RV
Sbjct: 16 DKTNHAKFCEFVLLEHAEVMDIPIRGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHES 75
Query: 300 -KLKDVDEDVP----------GAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQ 348
K+ DV + YI+AN++ +I QG T DF+ ++ +
Sbjct: 76 LKMFDVGDSDGKKIEVTSEDNAENYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISE 135
Query: 349 ENVRVIVMTTKEMERGKNKCAKYW--PDDHQSKTYGAVCVNNM---YESVTTDYILREFL 403
+VIV T +++ KC + W +D + +G + E T L +
Sbjct: 136 HESQVIVSLT-DIDDDDEKCFELWTKEEDSEL-AFGRFVAKILDIIEELSFTKTRLM--I 191
Query: 404 VSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQ 445
K S++ R+I+H+ F WPD+G+P+ L + +VN Q
Sbjct: 192 TDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQ 233
>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain. In general, SH2
domains are involved in signal transduction; they bind
pTyr-containing polypeptide ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites. They are present in a
wide array of proteins including: adaptor proteins
(Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1),
kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1,
Shp-2), transcription factors (STAT1), Ras signaling
molecules (Ras-Gap), ubiquitination factors (c-Cbl),
cytoskeleton regulators (Tensin), signal regulators
(SAP), and phospholipid second messengers (PLCgamma),
amongst others.
Length = 79
Score = 85.2 bits (211), Expect = 1e-20
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRL-NGEVTHIKIQNTGDCY 63
WFH SIS EAE LL + DG+FLVR S S PGD+ LSVR +G+V H I+ Y
Sbjct: 1 PWFHGSISREEAERLLRGK-PDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEGGY 59
Query: 64 DLYGGEK--FATLSELVQFY 81
L GG F +L ELV+ Y
Sbjct: 60 YLLGGSGRTFPSLPELVEHY 79
Score = 83.7 bits (207), Expect = 5e-20
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 27/103 (26%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
WFHG +S +EAE+L L+ +G+FLVRES S+PGD+
Sbjct: 1 PWFHGSISREEAERL------------------------LRGKPDGTFLVRESSSEPGDY 36
Query: 171 VLSVRTD-DKVTHVMIRCQAEKYDVGGGE--QFDSLTQLIEHY 210
VLSVR+ KV H +I Y + GG F SL +L+EHY
Sbjct: 37 VLSVRSGDGKVKHYLIERNEGGYYLLGGSGRTFPSLPELVEHY 79
>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in
Carboxyl-Terminal Src Kinase (Csk). Both the C-terminal
Src kinase (CSK) and CSK-homologous kinase (CHK) are
members of the CSK-family of protein tyrosine kinases.
These proteins suppress activity of Src-family kinases
(SFK) by selectively phosphorylating the conserved
C-terminal tail regulatory tyrosine by a similar
mechanism. CHK is also capable of inhibiting SFKs by a
non-catalytic mechanism that involves binding of CHK to
SFKs to form stable protein complexes. The
unphosphorylated form of SFKs is inhibited by CSK and
CHK by a two-step mechanism. The first step involves the
formation of a complex of SFKs with CSK/CHK with the
SFKs in the complex are inactive. The second step,
involves the phosphorylation of the C-terminal tail
tyrosine of SFKs, which then dissociates and adopt an
inactive conformation. The structural basis of how the
phosphorylated SFKs dissociate from CSK/CHK to adopt the
inactive conformation is not known. The inactive
conformation of SFKs is stabilized by two intramolecular
inhibitory interactions: (a) the pYT:SH2 interaction in
which the phosphorylated C-terminal tail tyrosine (YT)
binds to the SH2 domain, and (b) the linker:SH3
interaction of which the SH2-kinase domain linker binds
to the SH3 domain. SFKs are activated by multiple
mechanisms including binding of the ligands to the SH2
and SH3 domains to displace the two inhibitory
intramolecular interactions, autophosphorylation, and
dephosphorylation of YT. By selective phosphorylation
and the non-catalytic inhibitory mechanism CSK and CHK
are able to inhibit the active forms of SFKs. CSK and
CHK are regulated by phosphorylation and inter-domain
interactions. They both contain SH3, SH2, and kinase
domains separated by the SH3-SH2 connector and SH2
kinase linker, intervening segments separating the three
domains. They lack a conserved tyrosine phosphorylation
site in the kinase domain and the C-terminal tail
regulatory tyrosine phosphorylation site. The CSK SH2
domain is crucial for stabilizing the kinase domain in
the active conformation. A disulfide bond here regulates
CSK kinase activity. The subcellular localization and
activity of CSK are regulated by its SH2 domain. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 98
Score = 80.8 bits (200), Expect = 7e-19
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 24/103 (23%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
WFHG++S +EAE+L LQ ++G FLVRES + PGD+
Sbjct: 4 PWFHGKISREEAERL------------------------LQPPEDGLFLVRESTNYPGDY 39
Query: 171 VLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRN 213
L V + KV H + + K + E F++L QL+EHY ++
Sbjct: 40 TLCVSFEGKVEHYRVIYRNGKLTIDEEEYFENLIQLVEHYTKD 82
Score = 70.4 bits (173), Expect = 4e-15
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
WFH IS EAE LL DG FLVR S + PGD+TL V G+V H ++
Sbjct: 4 PWFHGKISREEAERLLQPPE-DGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLT 62
Query: 65 LYGGEKFATLSELVQFYMENQGQL 88
+ E F L +LV+ Y ++ L
Sbjct: 63 IDEEEYFENLIQLVEHYTKDADGL 86
>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain
found in Ras GTPase-activating protein 1 (GAP). RasGAP
is part of the GAP1 family of GTPase-activating
proteins. The protein is located in the cytoplasm and
stimulates the GTPase activity of normal RAS p21, but
not its oncogenic counterpart. Acting as a suppressor
of RAS function, the protein enhances the weak
intrinsic GTPase activity of RAS proteins resulting in
RAS inactivation, thereby allowing control of cellular
proliferation and differentiation. Mutations leading to
changes in the binding sites of either protein are
associated with basal cell carcinomas. Alternative
splicing results in two isoforms. The shorter isoform
which lacks the N-terminal hydrophobic region, has the
same activity, and is expressed in placental tissues.
In general longer isoform contains 2 SH2 domains, a SH3
domain, a pleckstrin homology (PH) domain, and a
calcium-dependent phospholipid-binding C2 domain. The
C-terminus contains the catalytic domain of RasGap
which catalyzes the activation of Ras by hydrolyzing
GTP-bound active Ras into an inactive GDP-bound form of
Ras. This model contains the C-terminal SH2 domain. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 77
Score = 75.9 bits (187), Expect = 3e-17
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
WFH IS EA +L++ G GSFLVR S + PGD++LS R+N + H KI TG+ +
Sbjct: 2 WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHFKIIPTGNNQFM 61
Query: 66 YGGEKFATLSELVQFY 81
GG F++L +++ Y
Sbjct: 62 MGGRYFSSLDDVIDRY 77
Score = 61.7 bits (150), Expect = 3e-12
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG++S +EA ++++ G GSFLVRES + PGD+
Sbjct: 2 WFHGKIS-----------------------REEAYNMLVKVGGPGSFLVRESDNTPGDYS 38
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHY 210
LS R ++ + H I + GG F SL +I+ Y
Sbjct: 39 LSFRVNEGIKHFKIIPTGNNQFMMGGRYFSSLDDVIDRY 77
>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2
(N-SH2) domain in Phospholipase C gamma. Phospholipase
C gamma is a signaling molecule that is recruited to the
C-terminal tail of the receptor upon autophosphorylation
of a highly conserved tyrosine. PLCgamma is composed of
a Pleckstrin homology (PH) domain followed by an
elongation factor (EF) domain, 2 catalytic regions of
PLC domains that flank 2 tandem SH2 domains (N-SH2,
C-SH2), and ending with a SH3 domain and C2 domain.
N-SH2 SH2 domain-mediated interactions represent a
crucial step in transmembrane signaling by receptor
tyrosine kinases. SH2 domains recognize phosphotyrosine
(pY) in the context of particular sequence motifs in
receptor phosphorylation sites. Both N-SH2 and C-SH2
have a very similar binding affinity to pY. But in
growth factor stimulated cells these domains bind to
different target proteins. N-SH2 binds to pY containing
sites in the C-terminal tails of tyrosine kinases and
other receptors. Recently it has been shown that this
interaction is mediated by phosphorylation-independent
interactions between a secondary binding site found
exclusively on the N-SH2 domain and a region of the
FGFR1 tyrosine kinase domain. This secondary site on the
SH2 cooperates with the canonical pY site to regulate
selectivity in mediating a specific cellular process.
C-SH2 binds to an intramolecular site on PLCgamma itself
which allows it to hydrolyze
phosphatidylinositol-4,5-bisphosphate into
diacylglycerol and inositol triphosphate. These then
activate protein kinase C and release calcium. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 99
Score = 74.3 bits (183), Expect = 2e-16
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 27/113 (23%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQ--KGKNGSFLVRESQSK 166
TE WFHG+L EAE+L+L+ +G +G+FLVRES++
Sbjct: 3 TEPWFHGKLGDGR---------------------DEAEKLLLEYCEGGDGTFLVRESETF 41
Query: 167 PGDFVLSVRTDDKVTHVMIRCQAE----KYDVGGGEQFDSLTQLIEHYKRNPM 215
GD+ LS + KV H IR + E KY + FDSL +LI++Y++NP+
Sbjct: 42 VGDYTLSFWRNGKVQHCRIRSRQENGEKKYYLTDNLVFDSLYELIDYYRQNPL 94
Score = 62.8 bits (153), Expect = 2e-12
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 2 SSRRWFHPSISG--VEAEVLLLE--RGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQ 57
+ WFH + EAE LLLE G DG+FLVR S + GD+TLS NG+V H +I+
Sbjct: 2 FTEPWFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIR 61
Query: 58 ----NTGDCYDLYGGEKFATLSELVQFYMEN 84
N Y L F +L EL+ +Y +N
Sbjct: 62 SRQENGEKKYYLTDNLVFDSLYELIDYYRQN 92
>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth
factor receptor-bound protein 2 (Grb2) and similar
proteins. The adaptor proteins here include homologs
Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5)
in Caenorhabditis elegans, and Downstream of receptor
kinase (drk) in Drosophila melanogaster. They are
composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk
regulates the Ras pathway by linking the tyrosine
kinases to the Ras guanine nucleotide releasing protein
Sos, which converts Ras to the active GTP-bound state.
The SH2 domain of Grb2/Sem-5/drk binds class II
phosphotyrosyl peptides while its SH3 domain binds to
Sos and Sos-derived, proline-rich peptides. Besides it
function in Ras signaling, Grb2 is also thought to play
a role in apoptosis. Unlike most SH2 structures in
which the peptide binds in an extended conformation
(such that the +3 peptide residue occupies a
hydrophobic pocket in the protein, conferring a modest
degree of selectivity), Grb2 forms several hydrogen
bonds via main chain atoms with the side chain of +2
Asn. In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 95
Score = 74.2 bits (183), Expect = 2e-16
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI-QNTGDCYD 64
WFH IS EAE +L+ + DG+FL+R S S+PGDF+LSV+ +V H K+ ++ Y
Sbjct: 5 WFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 65 LYGGEKFATLSELVQFYMEN 84
L+ KF +L+ELV ++
Sbjct: 65 LW-VVKFNSLNELVDYHRTT 83
Score = 62.7 bits (153), Expect = 2e-12
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 25/104 (24%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG++S EAE+ IL + +G+FL+RES+S PGDF
Sbjct: 5 WFHGKISRAEAEE-ILMNQRP----------------------DGAFLIRESESSPGDFS 41
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDSLTQLIEHYKRNP 214
LSV+ + V H + R A KY + +F+SL +L+++++
Sbjct: 42 LSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNSLNELVDYHRTTS 84
>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the
Src family of non-receptor tyrosine kinases. The Src
family kinases are nonreceptor tyrosine kinases that
have been implicated in pathways regulating
proliferation, angiogenesis, invasion and metastasis,
and bone metabolism. It is thought that transforming
ability of Src is linked to its ability to activate key
signaling molecules in these pathways, rather than
through direct activity. As such blocking Src activation
has been a target for drug companies. Src family members
can be divided into 3 groups based on their expression
pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck,
and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk
Of these, cellular c-Src is the best studied and most
frequently implicated in oncogenesis. The c-Src contains
five distinct regions: a unique N-terminal domain, an
SH3 domain, an SH2 domain, a kinase domain and a
regulatory tail, as do the other members of the family.
Src exists in both active and inactive conformations.
Negative regulation occurs through phosphorylation of
Tyr, resulting in an intramolecular association between
phosphorylated Tyr and the SH2 domain of SRC, which
locks the protein in a closed conformation. Further
stabilization of the inactive state occurs through
interactions between the SH3 domain and a proline-rich
stretch of residues within the kinase domain.
Conversely, dephosphorylation of Tyr allows SRC to
assume an open conformation. Full activity requires
additional autophosphorylation of a Tyr residue within
the catalytic domain. Loss of the negative-regulatory
C-terminal segment has been shown to result in increased
activity and transforming potential. Phosphorylation of
the C-terminal Tyr residue by C-terminal Src kinase
(Csk) and Csk homology kinase results in increased
intramolecular interactions and consequent Src
inactivation. Specific phosphatases, protein tyrosine
phosphatase a (PTPa) and the SH-containing phosphatases
SHP1/SHP2, have also been shown to take a part in Src
activation. Src is also activated by direct binding of
focal adhesion kinase (Fak) and Crk-associated substrate
(Cas) to the SH2 domain. SRC activity can also be
regulated by numerous receptor tyrosine kinases (RTKs),
such as Her2, epidermal growth factor receptor (EGFR),
fibroblast growth factor receptor, platelet-derived
growth factor receptor (PDGFR), and vascular endothelial
growth factor receptor (VEGFR). In general SH2 domains
are involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 73.4 bits (181), Expect = 4e-16
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 36/115 (31%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
E WF G++ K+AE+L+L G G+FL+RES++ PG
Sbjct: 2 AEEWFFGKIKRKDAEKLLLAPG----------------------NPRGTFLIRESETTPG 39
Query: 169 DFVLSVRTDDK-----VTHVMIRCQAEKYDVGGG-----EQFDSLTQLIEHYKRN 213
+ LSVR D V H IR K D GG F +L +L++HY ++
Sbjct: 40 AYSLSVRDGDDARGDTVKHYRIR----KLDNGGYYITTRATFPTLQELVQHYSKD 90
Score = 67.2 bits (165), Expect = 6e-14
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 6 WFHPSISGVEAE-VLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGE-----VTHIKIQNT 59
WF I +AE +LL G+FL+R S + PG ++LSVR + V H +I+
Sbjct: 5 WFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRIRKL 64
Query: 60 GDCYDLYGG------EKFATLSELVQFYMEN 84
+ GG F TL ELVQ Y ++
Sbjct: 65 DN-----GGYYITTRATFPTLQELVQHYSKD 90
>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2
(C-SH2) domain in Phospholipase C gamma. Phospholipase
C gamma is a signaling molecule that is recruited to the
C-terminal tail of the receptor upon autophosphorylation
of a highly conserved tyrosine. PLCgamma is composed of
a Pleckstrin homology (PH) domain followed by an
elongation factor (EF) domain, 2 catalytic regions of
PLC domains that flank 2 tandem SH2 domains (N-SH2,
C-SH2), and ending with a SH3 domain and C2 domain.
N-SH2 SH2 domain-mediated interactions represent a
crucial step in transmembrane signaling by receptor
tyrosine kinases. SH2 domains recognize phosphotyrosine
(pY) in the context of particular sequence motifs in
receptor phosphorylation sites. Both N-SH2 and C-SH2
have a very similar binding affinity to pY. But in
growth factor stimulated cells these domains bind to
different target proteins. N-SH2 binds to pY containing
sites in the C-terminal tails of tyrosine kinases and
other receptors. Recently it has been shown that this
interaction is mediated by phosphorylation-independent
interactions between a secondary binding site found
exclusively on the N-SH2 domain and a region of the
FGFR1 tyrosine kinase domain. This secondary site on the
SH2 cooperates with the canonical pY site to regulate
selectivity in mediating a specific cellular process.
C-SH2 binds to an intramolecular site on PLCgamma itself
which allows it to hydrolyze
phosphatidylinositol-4,5-bisphosphate into
diacylglycerol and inositol triphosphate. These then
activate protein kinase C and release calcium. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 104
Score = 72.3 bits (178), Expect = 1e-15
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 3 SRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC 62
S+ WFH +++ +AE +L+ DG+FLVRPS ++P F +S R G++ H +I+ G
Sbjct: 3 SKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQEGRL 62
Query: 63 YDLYGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPLS 103
+ + G +F +L ELV +Y ++ L ++ I+L+YP++
Sbjct: 63 FVI-GTSQFESLVELVSYYEKH--PLYRK----IKLRYPVN 96
Score = 63.8 bits (156), Expect = 1e-12
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
++ WFH L+ ++AE+++++ V G+FLVR S++ P
Sbjct: 3 SKEWFHANLTREQAEEMLMR--------VPRD---------------GAFLVRPSETDPN 39
Query: 169 DFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 228
F +S R + K+ H I+ + + + G QF+SL +L+ +Y+++P+ + L+ P
Sbjct: 40 SFAISFRAEGKIKHCRIKQEGRLFVI-GTSQFESLVELVSYYEKHPLYRK----IKLRYP 94
Query: 229 FN 230
N
Sbjct: 95 VN 96
>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2)
domain found in SH2 domains, ANK, and kinase domain
(shark) proteins. These non-receptor protein-tyrosine
kinases contain two SH2 domains, five ankyrin (ANK)-like
repeats, and a potential tyrosine phosphorylation site
in the carboxyl-terminal tail which resembles the
phosphorylation site in members of the src family. Like,
mammalian non-receptor protein-tyrosine kinases, ZAP-70
and syk proteins, they do not have SH3 domains. However,
the presence of ANK makes these unique among
protein-tyrosine kinases. Both tyrosine kinases and ANK
repeats have been shown to transduce developmental
signals, and SH2 domains are known to participate
intimately in tyrosine kinase signaling. These tyrosine
kinases are believed to be involved in epithelial cell
polarity. The members of this family include the shark
(SH2 domains, ANK, and kinase domain) gene in Drosophila
and yellow fever mosquitos, as well as the hydra protein
HTK16. Drosophila Shark is proposed to transduce
intracellularly the Crumbs, a protein necessary for
proper organization of ectodermal epithelia,
intercellular signal. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 81
Score = 70.9 bits (174), Expect = 2e-15
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 24/103 (23%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
RW+HG++S + AE L+L++G G++G FLVRES S PGD
Sbjct: 1 LRWYHGKISREVAEALLLREG----------------------GRDGLFLVRESTSAPGD 38
Query: 170 FVLSVRTDDKVTHVMIRCQAEK--YDVGGGEQFDSLTQLIEHY 210
+VLS+ +V H IR E + G F L LIEHY
Sbjct: 39 YVLSLLAQGEVLHYQIRRHGEDAFFSDDGPLIFHGLDTLIEHY 81
Score = 69.7 bits (171), Expect = 5e-15
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 5 RWFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC- 62
RW+H IS AE LLL G DG FLVR S S PGD+ LS+ GEV H +I+ G+
Sbjct: 2 RWYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRRHGEDA 61
Query: 63 -YDLYGGEKFATLSELVQFY 81
+ G F L L++ Y
Sbjct: 62 FFSDDGPLIFHGLDTLIEHY 81
>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the
Nck family. Nck proteins are adaptors that modulate
actin cytoskeleton dynamics by linking proline-rich
effector molecules to tyrosine kinases or
phosphorylated signaling intermediates. There are two
members known in this family: Nck1 (Nckalpha) and Nck2
(Nckbeta and Growth factor receptor-bound protein 4
(Grb4)). They are characterized by having 3 SH3
domains and a C-terminal SH2 domain. Nck1 and Nck2 have
overlapping functions as determined by gene knockouts.
Both bind receptor tyrosine kinases and other
tyrosine-phosphorylated proteins through their SH2
domains. In addition they also bind distinct targets.
Neuronal signaling proteins: EphrinB1, EphrinB2, and
Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And
in the case of PDGFR, Tyr(P)751 binds to Nck1 while
Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in
the infection process of enteropathogenic Escherichia
coli (EPEC). Their SH3 domains are involved in
recruiting and activating the N-WASP/Arp2/3 complex
inducing actin polymerization resulting in the
production of pedestals, dynamic bacteria-presenting
protrusions of the plasma membrane. A similar thing
occurs in the vaccinia virus where motile plasma
membrane projections are formed beneath the virus.
Recently it has been shown that the SH2 domains of both
Nck1 and Nck2 bind the G-protein coupled receptor
kinase-interacting protein 1 (GIT1) in a
phosphorylation-dependent manner. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 93
Score = 70.6 bits (173), Expect = 3e-15
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W++ I+ +AE LL E G++G FL+R S SNPGD+++S++ G H K+Q + Y +
Sbjct: 3 WYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVVDNVYCI 62
Query: 66 YGGEKFATLSELVQFYM 82
G KF T+ ELV+ Y
Sbjct: 63 -GQRKFHTMDELVEHYK 78
Score = 56.4 bits (136), Expect = 3e-10
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 144 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 203
+AE L+ + G G FL+R+S+S PGD+ +S++ + H ++ Y + G +F ++
Sbjct: 12 QAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVVDNVYCI-GQRKFHTM 70
Query: 204 TQLIEHYKRNPM 215
+L+EHYK+ P+
Sbjct: 71 DELVEHYKKAPI 82
>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson
murine lymphosarcoma virus (ABL) proteins. ABL-family
proteins are highly conserved tyrosine kinases. Each ABL
protein contains an SH3-SH2-TK (Src homology 3-Src
homology 2-tyrosine kinase) domain cassette, which
confers autoregulated kinase activity and is common
among nonreceptor tyrosine kinases. Several types of
posttranslational modifications control ABL catalytic
activity, subcellular localization, and stability, with
consequences for both cytoplasmic and nuclear ABL
functions. Binding partners provide additional
regulation of ABL catalytic activity, substrate
specificity, and downstream signaling. By combining this
cassette with actin-binding and -bundling domain, ABL
proteins are capable of connecting phosphoregulation
with actin-filament reorganization. Vertebrate paralogs,
ABL1 and ABL2, have evolved to perform specialized
functions. ABL1 includes nuclear localization signals
and a DNA binding domain which is used to mediate DNA
damage-repair functions, while ABL2 has additional
binding capacity for actin and for microtubules to
enhance its cytoskeletal remodeling functions. SH2 is
involved in several autoinhibitory mechanism that
constrain the enzymatic activity of the ABL-family
kinases. In one mechanism SH2 and SH3 cradle the kinase
domain while a cap sequence stabilizes the inactive
conformation resulting in a locked inactive state.
Another involves phosphatidylinositol 4,5-bisphosphate
(PIP2) which binds the SH2 domain through residues
normally required for phosphotyrosine binding in the
linker segment between the SH2 and kinase domains. The
SH2 domain contributes to ABL catalytic activity and
target site specificity. It is thought that the ABL
catalytic site and SH2 pocket have coevolved to
recognize the same sequences. Recent work now supports a
hierarchical processivity model in which the substrate
target site most compatible with ABL kinase domain
preferences is phosphorylated with greatest efficiency.
If this site is compatible with the ABL SH2 domain
specificity, it will then reposition and dock in the SH2
pocket. This mechanism also explains how ABL kinases
phosphorylates poor targets on the same substrate if
they are properly positioned and how relatively poor
substrate proteins might be recruited to ABL through a
complex with strong substrates that can also dock with
the SH2 pocket. In general SH2 domains are involved in
signal transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 94
Score = 69.0 bits (169), Expect = 1e-14
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 142 SKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQF 200
S+ A + +L G NGSFLVRES+S PG + +S+R D +V H I ++ K V +F
Sbjct: 11 SRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSDGKVYVTQEHRF 70
Query: 201 DSLTQLIEHYKRNP 214
++L +L+ H+ +N
Sbjct: 71 NTLAELVHHHSKNA 84
Score = 66.3 bits (162), Expect = 1e-13
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+H IS AE LL G +GSFLVR S S+PG +++S+R +G V H +I D
Sbjct: 5 WYHGPISRNAAEYLL-SSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSDGKVY 63
Query: 66 YGGE-KFATLSELVQFYMENQGQLKKRNQEVIELKYP 101
E +F TL+ELV + +N L + L+YP
Sbjct: 64 VTQEHRFNTLAELVHHHSKNADGL------ITTLRYP 94
>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain
found in alpha2-chimerin and beta2-chimerin proteins.
Chimerins are a family of phorbol ester- and
diacylglycerol-responsive GTPase-activating proteins.
Alpha1-chimerin (formerly known as n-chimerin) and
alpha2-chimerin are alternatively spliced products of a
single gene, as are beta1- and beta2-chimerin. alpha1-
and beta1-chimerin have a relatively short N-terminal
region that does not encode any recognizable domains,
whereas alpha2- and beta2-chimerin both include a
functional SH2 domain that can bind to phosphotyrosine
motifs within receptors. All of the isoforms contain a
GAP domain with specificity in vitro for Rac1 and a
diacylglycerol (DAG)-binding C1 domain which allows
them to translocate to membranes in response to DAG
signaling and anchors them in close proximity to
activated Rac. Other C1 domain-containing
diacylglycerol receptors including: PKC, Munc-13
proteins, phorbol ester binding scaffolding proteins
involved in Ca2+-stimulated exocytosis, and RasGRPs,
diacylglycerol-activated guanine-nucleotide exchange
factors (GEFs) for Ras and Rap1. In general SH2 domains
are involved in signal transduction. They typically
bind pTyr-containing ligands via two surface pockets, a
pTyr and hydrophobic binding pocket, allowing proteins
with SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 91
Score = 65.5 bits (160), Expect = 2e-13
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 7 FHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLY 66
+H IS EAE LL DGS+L+R S + G +TLS+R NG+V + K+ G + Y
Sbjct: 9 YHGLISREEAEQLLSGAS-DGSYLIRESSRDDGYYTLSLRFNGKVKNYKLYYDGKNHYHY 67
Query: 67 GGEK-FATLSELV-----QFYMEN 84
GEK F T+ +LV YME
Sbjct: 68 VGEKRFDTIHDLVADGLITLYMET 91
Score = 40.8 bits (96), Expect = 8e-05
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 143 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTH 182
+EAEQL+ +GS+L+RES G + LS+R + KV +
Sbjct: 16 EEAEQLLSGAS-DGSYLIRESSRDDGYYTLSLRFNGKVKN 54
>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in
the growth factor receptor bound, subclass 7 (Grb7)
proteins. The Grb family binds to the epidermal growth
factor receptor (EGFR, erbB1) via their SH2 domains.
There are 3 members of the Grb7 family of proteins:
Grb7, Grb10, and Grb14. They are composed of an
N-terminal Proline-rich domain, a Ras Associating-like
(RA) domain, a Pleckstrin Homology (PH) domain, a
phosphotyrosine interaction region (PIR, BPS) and a
C-terminal SH2 domain. The SH2 domains of Grb7, Grb10
and Grb14 preferentially bind to a different RTK. Grb7
binds strongly to the erbB2 receptor, unlike Grb10 and
Grb14 which bind weakly to it. Grb14 binds to
Fibroblast Growth Factor Receptor (FGFR). Grb10 has
been shown to interact with many different proteins,
including the insulin and IGF1 receptors,
platelet-derived growth factor (PDGF) receptor-beta,
Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family
proteins are phosphorylated on serine/threonine as well
as tyrosine residues. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 108
Score = 65.9 bits (161), Expect = 2e-13
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 3 SRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGD 61
S+ WFH IS EA L+ ++G DG FLVR S+SNPG F LS++ ++ H +I D
Sbjct: 4 SQPWFHGGISRDEAARLIRQQGLVDGVFLVRESQSNPGAFVLSLKHGQKIKHYQIIPIED 63
Query: 62 ----CYDLYGGE-KFATLSELVQFYMENQGQL 88
+ L G KF L +LV+FY N G L
Sbjct: 64 EGQWYFTLDDGVTKFYDLLQLVEFYQLNAGSL 95
Score = 62.4 bits (152), Expect = 3e-12
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 27/110 (24%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
++ WFHG +S EA +LI Q+G +G FLVRESQS PG
Sbjct: 4 SQPWFHGGISRDEAARLIRQQG----------------------LVDGVFLVRESQSNPG 41
Query: 169 DFVLSVRTDDKVTHVMIRCQAEKYDV-----GGGEQFDSLTQLIEHYKRN 213
FVLS++ K+ H I ++ G +F L QL+E Y+ N
Sbjct: 42 AFVLSLKHGQKIKHYQIIPIEDEGQWYFTLDDGVTKFYDLLQLVEFYQLN 91
>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast
Cancer Anti-estrogen Resistance protein 3. BCAR3 is
part of a growing family of guanine nucleotide exchange
factors is responsible for activation of Ras-family
GTPases, including Sos1 and 2, GRF1 and 2,
CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2,
PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS,
RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558
21262352 BCAR3 binds to the carboxy-terminus of
BCAR1/p130Cas, a focal adhesion adapter protein. Over
expression of BCAR1 (p130Cas) and BCAR3 induces
estrogen independent growth in normally
estrogen-dependent cell lines. They have been linked to
resistance to anti-estrogens in breast cancer, Rac
activation, and cell motility, though the BCAR3/p130Cas
complex is not required for this activity in BCAR3.
Many BCAR3-mediated signaling events in epithelial and
mesenchymal cells are independent of p130Cas
association. Structurally these proteins contain a
single SH2 domain upstream of their RasGEF domain,
which is responsible for the ability of BCAR3 to
enhance p130Cas over-expression-induced migration. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 136
Score = 65.8 bits (161), Expect = 4e-13
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI------QNT 59
W+H I AE L+ +G FLVR S S+PGD+ L+ R G+ H KI +
Sbjct: 8 WYHGRIPRQVAESLV---QREGDFLVRDSLSSPGDYVLTCRWKGQPLHFKINRVVLRPSE 64
Query: 60 GDCYDLY--GGEKFATLSELVQFYMEN 84
Y E+F ++ LV FY+ N
Sbjct: 65 AYTRVQYQFEDEQFDSIPALVHFYVGN 91
Score = 60.0 bits (146), Expect = 5e-11
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 38/131 (29%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG++ + AE L+ + G FLVR+S S PGD+V
Sbjct: 8 WYHGRIPRQVAESLVQR--------------------------EGDFLVRDSLSSPGDYV 41
Query: 172 LSVRTDDKVTHVMI---RCQAEKYDVG-----GGEQFDSLTQLIEHYKRN--PMVETSGT 221
L+ R + H I + + EQFDS+ L+ Y N P+ + SG
Sbjct: 42 LTCRWKGQPLHFKINRVVLRPSEAYTRVQYQFEDEQFDSIPALVHFYVGNRRPISQASGA 101
Query: 222 VVHLKQPFNAT 232
++ +P N T
Sbjct: 102 IIS--RPVNRT 110
>gnl|CDD|165107 PHA02740, PHA02740, protein tyrosine phosphatase; Provisional.
Length = 298
Score = 69.2 bits (169), Expect = 4e-13
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Query: 276 EGQKLDNRNKNRYKN------ILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYI 329
E K + +N+ K+ I H R+KL + DE V ++A ++ D + +I
Sbjct: 41 EANKACAQAENKAKDENLALHITRLLHRRIKLFN-DEKV-----LDARFVDGYDFEQKFI 94
Query: 330 ATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNM 389
+ F + V++IV+ ++ + K ++W S G V ++
Sbjct: 95 CIINLCEDACDKFLQALSDNKVQIIVLISRHAD--KKCFNQFW-----SLKEGCVITSDK 147
Query: 390 YESVTTDYILREFLV--------SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 441
++ T + I++ G +KI H+ + AWP G DP ++F +
Sbjct: 148 FQIETLEIIIKPHFNLTLLSLTDKFGQA--QKISHFQYTAWPADGFSHDPDAFIDFFCNI 205
Query: 442 NT 443
+
Sbjct: 206 DD 207
>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in
feline sarcoma, Fujinami poultry sarcoma, and
fes-related (Fes/Fps/Fer) proteins. The Fps family
consists of members Fps/Fes and Fer/Flk/Tyk3. They are
cytoplasmic protein-tyrosine kinases implicated in
signaling downstream from cytokines, growth factors and
immune receptors. Fes/Fps/Fer contains three
coiled-coil regions, an SH2 (Src-homology-2) and a TK
(tyrosine kinase catalytic) domain signature. Members
here include: Fps/Fes, Fer, Kin-31, and In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 90
Score = 64.1 bits (157), Expect = 6e-13
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 23/104 (22%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E ++HG L ++AE+L+ +G FLVR+++ K +
Sbjct: 6 EPYYHGLLPREDAEELLK---NDGDFLVRKTEPKGGGKR--------------------K 42
Query: 170 FVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRN 213
VLSVR D K+ H +I G+ F S+++LI +Y++
Sbjct: 43 LVLSVRWDGKIRHFVINRDDGGKYYIEGKSFKSISELINYYQKT 86
Score = 53.3 bits (129), Expect = 3e-09
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVR---PSRSNPGDFTLSVRLNGEVTHIKIQNTGDC 62
++H + +AE LL DG FLVR P LSVR +G++ H I
Sbjct: 8 YYHGLLPREDAEELLKN---DGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVINRDDG- 63
Query: 63 YDLYG--GEKFATLSELVQFYMENQ 85
Y G+ F ++SEL+ +Y + +
Sbjct: 64 -GKYYIEGKSFKSISELINYYQKTK 87
>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck. Nck
proteins are adaptors that modulate actin cytoskeleton
dynamics by linking proline-rich effector molecules to
tyrosine kinases or phosphorylated signaling
intermediates. There are two members known in this
family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth
factor receptor-bound protein 4 (Grb4)). They are
characterized by having 3 SH3 domains and a C-terminal
SH2 domain. Nck1 and Nck2 have overlapping functions as
determined by gene knockouts. Both bind receptor
tyrosine kinases and other tyrosine-phosphorylated
proteins through their SH2 domains. In addition they
also bind distinct targets. Neuronal signaling
proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1)
all bind to Nck-2 exclusively. And in the case of
PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds
to Nck2. Nck1 and Nck2 have a role in the infection
process of enteropathogenic Escherichia coli (EPEC).
Their SH3 domains are involved in recruiting and
activating the N-WASP/Arp2/3 complex inducing actin
polymerization resulting in the production of
pedestals, dynamic bacteria-presenting protrusions of
the plasma membrane. A similar thing occurs in the
vaccinia virus where motile plasma membrane projections
are formed beneath the virus. Recently it has been
shown that the SH2 domains of both Nck1 and Nck2 bind
the G-protein coupled receptor kinase-interacting
protein 1 (GIT1) in a phosphorylation-dependent manner.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 97
Score = 62.4 bits (151), Expect = 3e-12
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W++ ++ +AE+ L ERG +G FL+R S S+P DF++S++ G+ H K+Q +C
Sbjct: 3 WYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQ-LKECVYC 61
Query: 66 YGGEKFATLSELVQFY 81
G KF+++ ELV+ Y
Sbjct: 62 IGQRKFSSMEELVEHY 77
Score = 54.7 bits (131), Expect = 1e-09
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 144 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 203
+AE + ++G G FL+R+S+S P DF +S++ K H ++ + Y + G +F S+
Sbjct: 12 QAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKECVYCI-GQRKFSSM 70
Query: 204 TQLIEHYKRNPM 215
+L+EHYK+ P+
Sbjct: 71 EELVEHYKKAPI 82
>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the
growth factor receptor bound, subclass 14 (Grb14)
proteins. The Grb family binds to the epidermal growth
factor receptor (EGFR, erbB1) via their SH2 domains.
Grb14 is part of the Grb7 family of proteins which also
includes Grb7, and Grb14. They are composed of an
N-terminal Proline-rich domain, a Ras Associating-like
(RA) domain, a Pleckstrin Homology (PH) domain, a
phosphotyrosine interaction region (PIR, BPS) and a
C-terminal SH2 domain. The SH2 domains of Grb7, Grb10
and Grb14 preferentially bind to a different RTK. Grb14
binds to Fibroblast Growth Factor Receptor (FGFR) and
weakly to the erbB2 receptor. In general SH2 domains
are involved in signal transduction. They typically
bind pTyr-containing ligands via two surface pockets, a
pTyr and hydrophobic binding pocket, allowing proteins
with SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 108
Score = 61.9 bits (150), Expect = 5e-12
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 3 SRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGD 61
S+ WFH IS EA+ L++++G DG FLVR S+SNP F LS+ ++ H +I D
Sbjct: 4 SQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPVED 63
Query: 62 CYDLY-----GGEKFATLSELVQFYMENQGQL 88
+L+ G +F L +LV+FY N+G L
Sbjct: 64 DGELFHTLDDGHTRFTDLIQLVEFYQLNKGVL 95
Score = 53.8 bits (129), Expect = 3e-09
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
++ WFH ++S EA++LI+Q+G LV +G FLVR+SQS P
Sbjct: 4 SQPWFHHKISRDEAQRLIIQQG-----LV-----------------DGVFLVRDSQSNPR 41
Query: 169 DFVLSVRTDDKVTHVMIRCQAEKYDV-----GGGEQFDSLTQLIEHYKRN 213
FVLS+ K+ H I + ++ G +F L QL+E Y+ N
Sbjct: 42 TFVLSMSHGQKIKHFQIIPVEDDGELFHTLDDGHTRFTDLIQLVEFYQLN 91
>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck. Nck
proteins are adaptors that modulate actin cytoskeleton
dynamics by linking proline-rich effector molecules to
tyrosine kinases or phosphorylated signaling
intermediates. There are two members known in this
family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth
factor receptor-bound protein 4 (Grb4)). They are
characterized by having 3 SH3 domains and a C-terminal
SH2 domain. Nck1 and Nck2 have overlapping functions as
determined by gene knockouts. Both bind receptor
tyrosine kinases and other tyrosine-phosphorylated
proteins through their SH2 domains. In addition they
also bind distinct targets. Neuronal signaling
proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1)
all bind to Nck-2 exclusively. And in the case of
PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds
to Nck2. Nck1 and Nck2 have a role in the infection
process of enteropathogenic Escherichia coli (EPEC).
Their SH3 domains are involved in recruiting and
activating the N-WASP/Arp2/3 complex inducing actin
polymerization resulting in the production of
pedestals, dynamic bacteria-presenting protrusions of
the plasma membrane. A similar thing occurs in the
vaccinia virus where motile plasma membrane projections
are formed beneath the virus. Recently it has been
shown that the SH2 domains of both Nck1 and Nck2 bind
the G-protein coupled receptor kinase-interacting
protein 1 (GIT1) in a phosphorylation-dependent manner.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 98
Score = 61.2 bits (148), Expect = 7e-12
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W++ +++ +AE L ERG +G FL+R S S+P DF++S++ G+ H K+Q + Y +
Sbjct: 3 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNVYCI 62
Query: 66 YGGEKFATLSELVQFY 81
G +F ++ ELV+ Y
Sbjct: 63 -GQRRFNSMDELVEHY 77
Score = 54.7 bits (131), Expect = 1e-09
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 144 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 203
+AE + ++G G FL+R+S+S P DF +S++ K H ++ Y + G +F+S+
Sbjct: 12 QAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNVYCI-GQRRFNSM 70
Query: 204 TQLIEHYKRNPM 215
+L+EHYK+ P+
Sbjct: 71 DELVEHYKKAPI 82
>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual
adaptor for phosphotyrosine and 3-phosphoinositides (
DAPP1)/B lymphocyte adaptor molecule of 32 kDa
(Bam32)-like proteins. DAPP1/Bam32 contains a putative
myristoylation site at its N-terminus, followed by a SH2
domain, and a pleckstrin homology (PH) domain at its
C-terminus. DAPP1 could potentially be recruited to the
cell membrane by any of these domains. Its putative
myristoylation site could facilitate the interaction of
DAPP1 with the lipid bilayer. Its SH2 domain may also
interact with phosphotyrosine residues on
membrane-associated proteins such as activated tyrosine
kinase receptors. And finally its PH domain exhibits a
high-affinity interaction with the PtdIns(3,4,5)P(3)
PtdIns(3,4)P(2) second messengers produced at the cell
membrane following the activation of PI 3-kinases. DAPP1
is thought to interact with both tyrosine phosphorylated
proteins and 3-phosphoinositides and therefore may play
a role in regulating the location and/or activity of
such proteins(s) in response to agonists that elevate
PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is
likely to play an important role in triggering signal
transduction pathways that lie downstream from receptor
tyrosine kinases and PI 3-kinase. It is likely that
DAPP1 functions as an adaptor to recruit other proteins
to the plasma membrane in response to extracellular
signals. In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 92
Score = 61.0 bits (148), Expect = 8e-12
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 145 AEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLT 204
AE L+L G +GS+L+R S G F LSVR D V H + + G E F SL
Sbjct: 18 AEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYTGYSFKFGFNE-FSSLQ 76
Query: 205 QLIEHYKRNPMVETSG 220
++H+ P++ +
Sbjct: 77 DFVKHFANQPLIGSET 92
Score = 59.0 bits (143), Expect = 3e-11
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTG 60
+ S W+H +++ AE LLL G DGS+L+R S G F+LSVR V H ++ TG
Sbjct: 3 LQSLGWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYTG 62
Query: 61 DCYDLYGGEKFATLSELVQFYMENQG 86
+ +G +F++L + V+ + NQ
Sbjct: 63 YSFK-FGFNEFSSLQDFVKHF-ANQP 86
>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain
found in Ras GTPase-activating protein 1 (GAP). RasGAP
is part of the GAP1 family of GTPase-activating
proteins. The protein is located in the cytoplasm and
stimulates the GTPase activity of normal RAS p21, but
not its oncogenic counterpart. Acting as a suppressor of
RAS function, the protein enhances the weak intrinsic
GTPase activity of RAS proteins resulting in RAS
inactivation, thereby allowing control of cellular
proliferation and differentiation. Mutations leading to
changes in the binding sites of either protein are
associated with basal cell carcinomas. Alternative
splicing results in two isoforms. The shorter isoform
which lacks the N-terminal hydrophobic region, has the
same activity, and is expressed in placental tissues. In
general the longer isoform contains 2 SH2 domains, a SH3
domain, a pleckstrin homology (PH) domain, and a
calcium-dependent phospholipid-binding C2 domain. The
C-terminus contains the catalytic domain of RasGap which
catalyzes the activation of Ras by hydrolyzing GTP-bound
active Ras into an inactive GDP-bound form of Ras. This
model contains the N-terminal SH2 domain. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 103
Score = 61.4 bits (149), Expect = 8e-12
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 26/114 (22%)
Query: 97 ELKYPLSCADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNG 156
E+ PL+ P T +W+HG+L R AE+ + Q GK G
Sbjct: 8 EVAIPLTA--PPTNQWYHGRLD-------------------RTI----AEERLRQAGKLG 42
Query: 157 SFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHY 210
S+L+RES +PG FVLS + V H I Y + GG +F SL+ LI +Y
Sbjct: 43 SYLIRESDRRPGSFVLSFLSRTGVNHFRIIAMCGDYYI-GGRRFSSLSDLIGYY 95
Score = 53.3 bits (128), Expect = 5e-09
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
+W+H + AE L + G GS+L+R S PG F LS V H +I C D
Sbjct: 20 QWYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRI--IAMCGD 77
Query: 65 LY-GGEKFATLSELVQFY 81
Y GG +F++LS+L+ +Y
Sbjct: 78 YYIGGRRFSSLSDLIGYY 95
>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the
Src oncogene at 42A (Src42). Src42 is a member of the
Src non-receptor type tyrosine kinase family of
proteins. The integration of receptor tyrosine
kinase-induced RAS and Src42 signals by Connector
eNhancer of KSR (CNK) as a two-component input is
essential for RAF activation in Drosophila. Src42 is
present in a wide variety of organisms including:
California sea hare, pea aphid, yellow fever mosquito,
honey bee, Panamanian leafcutter ant, and sea urchin.
Src42 has a unique N-terminal domain, an SH3 domain, an
SH2 domain, a kinase domain and a regulatory tail, as do
the other members of the family. Like the other members
of the Src family the SH2 domain in addition to binding
the target, also plays an autoinhibitory role by binding
to its C-terminal tail. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 96
Score = 61.0 bits (148), Expect = 8e-12
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 14/91 (15%)
Query: 144 EAEQ-LILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGG-----G 197
EAE+ L+L + ++G+FL+R+S+S+ D+ LSVR D V H IR + D GG
Sbjct: 14 EAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIR----QLDEGGFFIARR 69
Query: 198 EQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 228
F +L +L+EHY + ++ G V+L++P
Sbjct: 70 TTFRTLQELVEHYSK----DSDGLCVNLRKP 96
Score = 52.1 bits (125), Expect = 1e-08
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 3 SRRWFHPSISGVEAE-VLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI-QNTG 60
+ W+ I +EAE LLL G+FL+R S S D++LSVR V H +I Q
Sbjct: 2 AEPWYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDE 61
Query: 61 DCYDLYGGEKFATLSELVQFY 81
+ + F TL ELV+ Y
Sbjct: 62 GGFFIARRTTFRTLQELVEHY 82
>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1
proteins. Proto-oncogene vav is a member of the Dbl
family of guanine nucleotide exchange factors (GEF) for
the Rho family of GTP binding proteins. All vavs are
activated by tyrosine phosphorylation leading to their
activation. There are three Vav mammalian family
members: Vav1 which is expressed in the hematopoietic
system, and Vav2 and Vav3 are more ubiquitously
expressed. Vav1 plays a role in T-cell and B-cell
development and activation. It has been identified as
the specific binding partner of Nef proteins from
HIV-1, resulting in morphological changes, cytoskeletal
rearrangements, and the JNK/SAPK signaling cascade,
leading to increased levels of viral transcription and
replication. Vav1 has been shown to interact with Ku70,
PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2,
SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ,
Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene
and EZH2. Vav proteins are involved in several
processes that require cytoskeletal reorganization,
such as the formation of the immunological synapse
(IS), phagocytosis, platelet aggregation, spreading,
and transformation. Vavs function as guanine
nucleotide exchange factors (GEFs) for the Rho/Rac
family of GTPases. Vav family members have several
conserved motifs/domains including: a leucine-rich
region, a leucine-zipper, a calponin homology (CH)
domain, an acidic domain, a Dbl-homology (DH) domain, a
pleckstrin homology (PH) domain, a cysteine-rich
domain, 2 SH3 domains, a proline-rich region, and a SH2
domain. Vavs are the only known Rho GEFs that have
both the DH/PH motifs and SH2/SH3 domains in the same
protein. The leucine-rich helix-loop-helix (HLH) domain
is thought to be involved in protein heterodimerization
with other HLH proteins and it may function as a
negative regulator by forming inactive heterodimers.
The CH domain is usually involved in the association
with filamentous actin, but in Vav it controls NFAT
stimulation, Ca2+ mobilization, and its transforming
activity. Acidic domains are involved in
protein-protein interactions and contain regulatory
tyrosines. The DH domain is a GDP-GTP exchange factor
on Rho/Rac GTPases. The PH domain in involved in
interactions with GTP-binding proteins, lipids and/or
phosphorylated serine/threonine residues. The SH3
domain is involved in localization of proteins to
specific sites within the cell interacting with protein
with proline-rich sequences. The SH2 domain mediates a
high affinity interaction with tyrosine phosphorylated
proteins. In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 103
Score = 60.8 bits (147), Expect = 1e-11
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTG 60
+S W+ + AE +L R DG++LVR + +F +S++ N EV HIKI
Sbjct: 2 LSVHLWYAGPMERAGAESILANRS-DGTYLVRQRVKDAAEFAISIKYNVEVKHIKIMTAE 60
Query: 61 DCYDLYGGEKFATLSELVQFYMEN 84
Y + + F L+ELV+FY +N
Sbjct: 61 GLYRITEKKAFRGLTELVEFYQQN 84
Score = 44.2 bits (104), Expect = 7e-06
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 141 QSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQF 200
+ AE IL +G++LVR+ +F +S++ + +V H+ I Y + + F
Sbjct: 13 ERAGAE-SILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEKKAF 71
Query: 201 DSLTQLIEHYKRNPM 215
LT+L+E Y++N +
Sbjct: 72 RGLTELVEFYQQNSL 86
>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2)
domain found in SH2 domains, ANK, and kinase domain
(shark) proteins. These non-receptor protein-tyrosine
kinases contain two SH2 domains, five ankyrin (ANK)-like
repeats, and a potential tyrosine phosphorylation site
in its carboxyl-terminal tail which resembles the
phosphorylation site in members of the src family. Like,
mammalian non-receptor protein-tyrosine kinases, ZAP-70
and syk proteins, they do not have SH3 domains. However,
the presence of ANK makes these unique among
protein-tyrosine kinases. Both tyrosine kinases and ANK
repeats have been shown to transduce developmental
signals, and SH2 domains are known to participate
intimately in tyrosine kinase signaling. These tyrosine
kinases are believed to be involved in epithelial cell
polarity. The members of this family include the shark
(SH2 domains, ANK, and kinase domain) gene in Drosophila
and yellow fever mosquitos, as well as the hydra protein
HTK16. Drosophila Shark is proposed to transduce
intracellularly the Crumbs, a protein necessary for
proper organization of ectodermal epithelia,
intercellular signal. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 86
Score = 59.4 bits (144), Expect = 2e-11
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W HG L EA +++ QK +GSFLVR S+ +PG +V
Sbjct: 2 WLHGALDRNEAVEILKQKADA----------------------DGSFLVRYSRRRPGGYV 39
Query: 172 LSVRTDDKVTHVMIRCQAEK-YDVGGGEQFDSLTQLIEHYKR 212
L++ ++ V H I+ + +K + + G F+SL LIEHY +
Sbjct: 40 LTLVYENHVYHFEIQNRDDKWFYIDDGPYFESLEHLIEHYTQ 81
Score = 55.5 bits (134), Expect = 6e-10
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 6 WFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
W H ++ EA +L ++ DGSFLVR SR PG + L++ V H +IQN D +
Sbjct: 2 WLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQNRDDKW- 60
Query: 65 LY--GGEKFATLSELVQFYM 82
Y G F +L L++ Y
Sbjct: 61 FYIDDGPYFESLEHLIEHYT 80
>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2)
domain found in Zeta-chain-associated protein kinase 70
(ZAP-70) and Spleen tyrosine kinase (Syk) proteins.
ZAP-70 and Syk comprise a family of hematopoietic cell
specific protein tyrosine kinases (PTKs) that are
required for antigen and antibody receptor function.
ZAP-70 is expressed in T and natural killer (NK) cells
and Syk is expressed in B cells, mast cells,
polymorphonuclear leukocytes, platelets, macrophages,
and immature T cells. They are required for the proper
development of T and B cells, immune receptors, and
activating NK cells. They consist of two N-terminal Src
homology 2 (SH2) domains and a C-terminal kinase domain
separated from the SH2 domains by a linker or hinge
region. Phosphorylation of both tyrosine residues within
the Immunoreceptor Tyrosine-based Activation Motifs
(ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the
Src-family PTKs is required for efficient interaction of
ZAP-70 and Syk with the receptor subunits and for
receptor function. ZAP-70 forms two phosphotyrosine
binding pockets, one of which is shared by both SH2
domains. In Syk the two SH2 domains do not form such a
phosphotyrosine-binding site. The SH2 domains here are
believed to function independently. In addition, the two
SH2 domains of Syk display flexibility in their relative
orientation, allowing Syk to accommodate a greater
variety of spacing sequences between the ITAM
phosphotyrosines and singly phosphorylated non-classical
ITAM ligands. This model contains the N-terminus SH2
domains of both Syk and Zap70. In general SH2 domains
are involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 104
Score = 57.8 bits (140), Expect = 1e-10
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 5 RWFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC- 62
+F+ SI+ EAE L G DG FL+R S + G + LSV + H I+ +
Sbjct: 2 PFFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLNGT 61
Query: 63 YDLYGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
Y + GG+ +EL +++ + L V L+ P
Sbjct: 62 YAIAGGKAHCGPAELCEYHSTDLDGL------VCLLRKPC 95
Score = 55.1 bits (133), Expect = 1e-09
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 27/121 (22%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
+F+G ++ +EAE+ + G + G FL+R+S G +
Sbjct: 2 PFFYGSITREEAEEYLKLAGMSD----------------------GLFLLRQSLRSLGGY 39
Query: 171 VLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPF 229
VLSV K H I Q Y + GG+ +L E++ + G V L++P
Sbjct: 40 VLSVCHGRKFHHYTIERQLNGTYAIAGGKAHCGPAELCEYHSTDL----DGLVCLLRKPC 95
Query: 230 N 230
N
Sbjct: 96 N 96
>gnl|CDD|198183 cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) domain found in
B-cell linker (BLNK) protein and SH2 domain-containing
leukocyte protein of 76 kDa (SLP-76). BLNK (also known
as SLP-65 or BASH) is an important adaptor protein
expressed in B-lineage cells. BLNK consists of a
N-terminal sterile alpha motif (SAM) domain and a
C-terminal SH2 domain. BLNK is a cytoplasmic protein,
but a part of it is bound to the plasma membrane through
an N-terminal leucine zipper motif and transiently bound
to a cytoplasmic domain of Iga through its C-terminal
SH2 domain upon B cell antigen receptor
(BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is
necessary for the binding with the BLNK SH2 domain
and/or for normal BLNK function in signaling and B cell
activation. Upon phosphorylation BLNK binds Btk and
PLCgamma2 through their SH2 domains and mediates
PLCgamma2 activation by Btk. BLNK also binds other
signaling molecules such as Vav, Grb2, Syk, and HPK1.
BLNK has been shown to be necessary for BCR-mediated
Ca2+ mobilization, for the activation of
mitogen-activated protein kinases such as ERK, JNK, and
p38 in a chicken B cell line DT40, and for activation of
transcription factors such as NF-AT and NF-kappaB in
human or mouse B cells. BLNK is involved in B cell
development, B cell survival, activation, proliferation,
and T-independent immune responses. BLNK is structurally
homologous to SLP-76. SLP-76 and (linker for activation
of T cells) LAT are adaptor/linker proteins in T cell
antigen receptor activation and T cell development. BLNK
interacts with many downstream signaling proteins that
interact directly with both SLP-76 and LAT. New data
suggest functional complementation of SLP-76 and LAT in
T cell antigen receptor function with BLNK in BCR
function. In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 121
Score = 58.1 bits (141), Expect = 1e-10
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 27/118 (22%)
Query: 105 ADPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQ 164
AD + W+ G + KEAE+ + + K+G+FLVR+S K++ Q
Sbjct: 6 ADLLPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQ----------------- 48
Query: 165 SKPGDFVLSVRTDDKVTHVMIRCQAEK--YDVG----GGEQFDSLTQLIEHYKRNPMV 216
P + L V +DKV ++ IR Y +G G E F S+ ++IEH+++ P++
Sbjct: 49 --P--YTLMVLYNDKVYNIQIRFLENTRQYALGTGLRGEETFSSVAEIIEHHQKTPLL 102
Score = 47.3 bits (113), Expect = 9e-07
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPS----RSNPGDFTLSVRLNGEVTHIKI 56
+ + W+ +I EAE L DG+FLVR S S P +TL V N +V +I+I
Sbjct: 8 LLPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQP--YTLMVLYNDKVYNIQI 65
Query: 57 --QNTGDCY----DLYGGEKFATLSELVQFYMEN 84
Y L G E F++++E+++ + +
Sbjct: 66 RFLENTRQYALGTGLRGEETFSSVAEIIEHHQKT 99
>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in
cancer-related signaling adaptor protein CRK. SH2
domain in the CRK proteins. CRKI (SH2-SH3) and CRKII
(SH2-SH3-SH3) are splicing isoforms of the oncoprotein
CRK. CRKs regulate transcription and cytoskeletal
reorganization for cell growth and motility by linking
tyrosine kinases to small G proteins. The SH2 domain of
CRK associates with tyrosine-phosphorylated receptors or
components of focal adhesions, such as p130Cas and
paxillin. CRK transmits signals to small G proteins
through effectors that bind its SH3 domain, such as C3G,
the guanine-nucleotide exchange factor (GEF) for Rap1
and R-Ras, and DOCK180, the GEF for Rac6. The binding of
p130Cas to the CRK-C3G complex activates Rap1, leading
to regulation of cell adhesion, and activates R-Ras,
leading to JNK-mediated activation of cell
proliferation, whereas the binding of CRK DOCK180
induces Rac1-mediated activation of cellular migration.
The activity of the different splicing isoforms varies
greatly with CRKI displaying substantial transforming
activity, CRKII less so, and phosphorylated CRKII with
no biological activity whatsoever. CRKII has a linker
region with a phosphorylated Tyr and an additional
C-terminal SH3 domain. The phosphorylated Tyr creates a
binding site for its SH2 domain which disrupts the
association between CRK and its SH2 target proteins. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 106
Score = 57.1 bits (138), Expect = 2e-10
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 141 QSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVG---- 195
S++ Q +LQ ++G FLVR+S + PGD+VLSV + +V+H +I +
Sbjct: 14 MSRQEAQELLQGQRHGVFLVRDSSTIPGDYVLSVSENSRVSHYIINSLGQPAPNQSRYRI 73
Query: 196 GGEQFDSLTQLIEHYK 211
G ++FD L L+E YK
Sbjct: 74 GDQEFDDLPALLEFYK 89
Score = 47.5 bits (113), Expect = 6e-07
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 6 WFHPSISGVEA-EVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
W+ +S EA E+L +R G FLVR S + PGD+ LSV N V+H I + G
Sbjct: 9 WYFGPMSRQEAQELLQGQR--HGVFLVRDSSTIPGDYVLSVSENSRVSHYIINSLGQPAP 66
Query: 65 LY-----GGEKFATLSELVQFY 81
G ++F L L++FY
Sbjct: 67 NQSRYRIGDQEFDDLPALLEFY 88
>gnl|CDD|198209 cd10346, SH2_SH2B_family, Src homology 2 (SH2) domain found in SH2B
adapter protein family. The SH2B adapter protein family
has 3 members: SH2B1 (SH2-B, PSM), SH2B2 (APS), and
SH2B3 (Lnk). SH2B family members contain a pleckstrin
homology domain, at least one dimerization domain, and a
C-terminal SH2 domain which binds to phosphorylated
tyrosines in a variety of tyrosine kinases. SH2B1 and
SH2B2 function in signaling pathways found downstream
of growth hormone receptor and receptor tyrosine
kinases, including the insulin, insulin-like growth
factor-I (IGF-I), platelet-derived growth factor (PDGF),
nerve growth factor, hepatocyte growth factor, and
fibroblast growth factor receptors. SH2B2beta, a new
isoform of SH2B2, is an endogenous inhibitor of SH2B1
and/or SH2B2 (SH2B2alpha), negatively regulating insulin
signaling and/or JAK2-mediated cellular responses. SH2B3
negatively regulates lymphopoiesis and early
hematopoiesis. The lnk-deficiency results in enhanced
production of B cells, and expansion as well as enhanced
function of hematopoietic stem cells (HSCs),
demonstrating negative regulatory functions of Sh2b3/Lnk
in cytokine signaling. Sh2b3/Lnk also functions in
responses controlled by cell adhesion and in crosstalk
between integrin- and cytokine-mediated signaling. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 97
Score = 57.0 bits (138), Expect = 2e-10
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 33/115 (28%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG LS +A QL+L G +G +G FLVR+S+++ G+FV
Sbjct: 10 WFHGTLSRSDAAQLVLHSGADG---------------------HGVFLVRQSETRRGEFV 48
Query: 172 LSVRTDDKVTHVMI------RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSG 220
L+ + H+ + +C+ + F S+ ++EH+++NP+ SG
Sbjct: 49 LTFNFQGRAKHLRLTLNEKGQCRVQHL------WFPSIFDMLEHFRQNPIPLESG 97
Score = 45.5 bits (108), Expect = 3e-06
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYD--GSFLVRPSRSNPGDFTLSVRLNGEVTHIKI 56
+S WFH ++S +A L+L G D G FLVR S + G+F L+ G H+++
Sbjct: 5 LSEYPWFHGTLSRSDAAQLVLHSGADGHGVFLVRQSETRRGEFVLTFNFQGRAKHLRL 62
>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in
Tec-like proteins. The Tec protein tyrosine kinase is
the founding member of a family that includes Btk, Itk,
Bmx, and Txk. The members have a PH domain, a
zinc-binding motif, a SH3 domain, a SH2 domain, and a
protein kinase catalytic domain. Btk is involved in
B-cell receptor signaling with mutations in Btk
responsible for X-linked agammaglobulinemia (XLA) in
humans and X-linked immunodeficiency (xid) in mice. Itk
is involved in T-cell receptor signaling. Tec is
expressed in both T and B cells, and is thought to
function in activated and effector T lymphocytes to
induce the expression of genes regulated by NFAT
transcription factors. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 104
Score = 57.0 bits (138), Expect = 3e-10
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSV----RLNGEVTHIKIQNTGD 61
W+ +S AE LL + +G F+VR S S G +T+S+ + V H I+
Sbjct: 8 WYVGDMSRQRAESLLKQEDKEGCFVVRNS-STKGLYTVSLFTKVPGSPHVKHYHIKQNAR 66
Query: 62 CYDLYGGEK--FATLSELVQFYMENQGQLKKRNQEVIELKYPLS 103
+ Y EK F T+ EL+ ++ N G L R LKYP+
Sbjct: 67 S-EFYLAEKHCFETIPELINYHQHNSGGLATR------LKYPVC 103
Score = 47.8 bits (114), Expect = 4e-07
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 33/122 (27%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+ G +S + AE L+ Q+ K G F+VR S S G +
Sbjct: 8 WYVGDMSRQRAESLLKQEDKEGCFVVRNS------------------------STKGLYT 43
Query: 172 LSVRT----DDKVTHVMIRCQAE-KYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLK 226
+S+ T V H I+ A ++ + F+++ +LI +++ N G LK
Sbjct: 44 VSLFTKVPGSPHVKHYHIKQNARSEFYLAEKHCFETIPELINYHQHNS----GGLATRLK 99
Query: 227 QP 228
P
Sbjct: 100 YP 101
>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain
found in Spleen tyrosine kinase (Syk) proteins. ZAP-70
and Syk comprise a family of hematopoietic cell specific
protein tyrosine kinases (PTKs) that are required for
antigen and antibody receptor function. ZAP-70 is
expressed in T and natural killer (NK) cells and Syk is
expressed in B cells, mast cells, polymorphonuclear
leukocytes, platelets, macrophages, and immature T
cells. They are required for the proper development of T
and B cells, immune receptors, and activating NK cells.
They consist of two N-terminal Src homology 2 (SH2)
domains and a C-terminal kinase domain separated from
the SH2 domains by a linker or hinge region.
Phosphorylation of both tyrosine residues within the
Immunoreceptor Tyrosine-based Activation Motifs (ITAM;
consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the
Src-family PTKs is required for efficient interaction of
ZAP-70 and Syk with the receptor subunits and for
receptor function. ZAP-70 forms two phosphotyrosine
binding pockets, one of which is shared by both SH2
domains. In Syk the two SH2 domains do not form such a
phosphotyrosine-binding site. The SH2 domains here are
believed to function independently. In addition, the two
SH2 domains of Syk display flexibility in their relative
orientation, allowing Syk to accommodate a greater
variety of spacing sequences between the ITAM
phosphotyrosines and singly phosphorylated non-classical
ITAM ligands. This model contains the C-terminus SH2
domains of Syk. In general SH2 domains are involved in
signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 99
Score = 56.1 bits (135), Expect = 4e-10
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 24/104 (23%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG++S +E+EQ++L K NG FL+RE + G +
Sbjct: 5 WFHGKISREESEQILLIGSKT----------------------NGKFLIRERDNN-GSYA 41
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDSLTQLIEHYKRNP 214
L + D KV H I + + K + G++FD+L QL+EHY P
Sbjct: 42 LCLLHDGKVLHYRIDKDKTGKLSIPDGKKFDTLWQLVEHYSYKP 85
Score = 42.2 bits (99), Expect = 3e-05
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 6 WFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI--QNTGDC 62
WFH IS E+E +LL +G FL+R +N G + L + +G+V H +I TG
Sbjct: 5 WFHGKISREESEQILLIGSKTNGKFLIRERDNN-GSYALCLLHDGKVLHYRIDKDKTGK- 62
Query: 63 YDLYGGEKFATLSELVQFY 81
+ G+KF TL +LV+ Y
Sbjct: 63 LSIPDGKKFDTLWQLVEHY 81
>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain
found in p85. Phosphoinositide 3-kinases (PI3Ks) are
essential for cell growth, migration, and survival.
p110, the catalytic subunit, is composed of an
adaptor-binding domain, a Ras-binding domain, a C2
domain, a helical domain, and a kinase domain. The
regulatory unit is called p85 and is composed of an SH3
domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain,
a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain.
There are 2 inhibitory interactions between p110alpha
and p85 of P13K: 1) p85 nSH2 domain with the C2,
helical, and kinase domains of p110alpha and 2) p85 iSH2
domain with C2 domain of p110alpha. There are 3
inhibitory interactions between p110beta and p85 of
P13K: 1) p85 nSH2 domain with the C2, helical, and
kinase domains of p110beta, 2) p85 iSH2 domain with C2
domain of p110alpha, and 3) p85 cSH2 domain with the
kinase domain of p110alpha. It is interesting to note
that p110beta is oncogenic as a wild type protein while
p110alpha lacks this ability. One explanation is the
idea that the regulation of p110beta by p85 is unique
because of the addition of inhibitory contacts from the
cSH2 domain and the loss of contacts in the iSH2 domain.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 104
Score = 55.5 bits (134), Expect = 1e-09
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 4 RRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNT---- 59
R W I+ +AE LL + DG+FL+R S S G + SV NGEV H I T
Sbjct: 6 RTWLVGDINRTQAEELLRGKP-DGTFLIRES-STQGCYACSVVCNGEVKHCVIYKTETGY 63
Query: 60 --GDCYDLYGGEKFATLSELVQFYMENQGQLKKRNQEV-IELKYPL 102
+ Y+LY +L ELV Y N L++ N + + L YP+
Sbjct: 64 GFAEPYNLYE-----SLKELVLHYAHN--SLEQHNDSLTVTLAYPV 102
Score = 50.5 bits (121), Expect = 5e-08
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 37/127 (29%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W G ++ +AE+L+ K +G+FL+RES S G +
Sbjct: 8 WLVGDINRTQAEELLRGK-PDGTFLIRES------------------------STQGCYA 42
Query: 172 LSVRTDDKVTHVMIRCQ------AEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTV-VH 224
SV + +V H +I AE Y++ ++SL +L+ HY N + + + ++ V
Sbjct: 43 CSVVCNGEVKHCVIYKTETGYGFAEPYNL-----YESLKELVLHYAHNSLEQHNDSLTVT 97
Query: 225 LKQPFNA 231
L P A
Sbjct: 98 LAYPVLA 104
>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in
SH2-containing inositol-5'-phosphatase (SHIP) and
SLAM-associated protein (SAP). The SH2-containing
inositol-5'-phosphatase, SHIP (also called
SHIP1/SHIP1a), is a hematopoietic-restricted
phosphatidylinositide phosphatase that translocates to
the plasma membrane after extracellular stimulation and
hydrolyzes the phosphatidylinositol-3-kinase
(PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to
PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated
signaling and represses the proliferation,
differentiation, survival, activation, and migration of
hematopoietic cells. PIP3 recruits lipid-binding
pleckstrin homology(PH) domain-containing proteins to
the inner wall of the plasma membrane and activates
them. PH domain-containing downstream effectors include
the survival/proliferation enhancing serine/threonine
kinase, Akt (protein kinase B), the tyrosine kinase,
Btk, the regulator of protein translation, S6K, and the
Rac and cdc42 guanine nucleotide exchange factor, Vav.
SHIP is believed to act as a tumor suppressor during
leukemogenesis and lymphomagenesis, and may play a role
in activating the immune system to combat cancer. SHIP
contains an N-terminal SH2 domain, a centrally located
phosphatase domain that specifically hydrolyzes the
5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5-
tetrakisphosphate (IP4), a C2 domain, that is an
allosteric activating site when bound by SHIP's
enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind
proteins with a phosphotyrosine binding (Shc, Dok 1, Dok
2) or an SH2 (p85a, SHIP2) domain; and a proline-rich
domain consisting of four PxxP motifs that bind a subset
of SH3-containing proteins including Grb2, Src, Lyn,
Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds
to the tyrosine phosphorylated forms of Shc, SHP-2,
Doks, Gabs, CD150, platelet-endothelial cell adhesion
molecule, Cas, c-Cbl, immunoreceptor tyrosine-based
inhibitory motifs (ITIMs), and immunoreceptor
tyrosine-based activation motifs (ITAMs). The X-linked
lymphoproliferative syndrome (XLP) gene encodes SAP
(also called SH2D1A/DSHP) a protein that consists of a 5
residue N-terminus, a single SH2 domain, and a short 25
residue C-terminal tail. XLP is characterized by an
extreme sensitivity to Epstein-Barr virus. Both T and
natural killer (NK) cell dysfunctions have been seen in
XLP patients. SAP binds the cytoplasmic tail of
Signaling lymphocytic activation molecule (SLAM), 2B4,
Ly-9, and CD84. SAP is believed to function as a
signaling inhibitor, by blocking or regulating binding
of other signaling proteins. SAP and the SAP-like
protein EAT-2 recognize the sequence motif TIpYXX(V/I),
which is found in the cytoplasmic domains of a
restricted number of T, B, and NK cell surface receptors
and are proposed to be natural inhibitors or regulators
of the physiological role of a small family of receptors
on the surface of these cells. In general SH2 domains
are involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 55.1 bits (133), Expect = 1e-09
Identities = 39/104 (37%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEV-THIKIQNTGDCYD 64
W+H +I+ +AE LL + G DGSFLVR S S G + L V V T+ + N D
Sbjct: 5 WYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRILPNAEDKLS 64
Query: 65 LYGGE-----KFATLSELVQFYM-ENQGQLKKRNQEVIELKYPL 102
+ E F TL EL++FY EN G V L YP+
Sbjct: 65 VQASEGVPVRFFTTLPELIEFYQKENMGL-------VTHLLYPV 101
Score = 47.8 bits (114), Expect = 4e-07
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 29/121 (23%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKE---AEQLILQKGKNGSFLVRESQSKP- 167
W+HG ++ +AE+L+ + GK+GSFLVR+S+S A ++ Q V + P
Sbjct: 5 WYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQN------CVHTYRILPN 58
Query: 168 GDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQ 227
+ LSV+ + V +R F +L +LIE Y++ E G V HL
Sbjct: 59 AEDKLSVQASEGVP---VRF------------FTTLPELIEFYQK----ENMGLVTHLLY 99
Query: 228 P 228
P
Sbjct: 100 P 100
>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in
Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristoylation sites (srm).
Srm is a nonreceptor protein kinase that has two SH2
domains, a SH3 domain, and a kinase domain with a
tyrosine residue for autophosphorylation. However it
lacks an N-terminal glycine for myristoylation and a
C-terminal tyrosine which suppresses kinase activity
when phosphorylated. Srm is most similar to members of
the Tec family who other members include: Tec, Btk/Emb,
and Itk/Tsk/Emt. However Srm differs in its N-terminal
unique domain it being much smaller than in the Tec
family and is closer to Src. Srm is thought to be a new
family of nonreceptor tyrosine kinases that may be
redundant in function. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 79
Score = 54.2 bits (130), Expect = 1e-09
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVRLNGEVTHIKI--QNTGDC 62
W+ IS +A+ LLL + G+FL+RPS S+ G ++LSVR +V H +I +G
Sbjct: 2 WYFSGISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRICMAPSGSL 61
Query: 63 YDLYGGEKFATLSELVQFY 81
Y L G F L EL+ +Y
Sbjct: 62 Y-LQKGRLFPGLEELLAYY 79
Score = 44.2 bits (104), Expect = 5e-06
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 144 EAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYD--VGGGEQF 200
+A+QL+L + G+FL+R S+S G + LSVR KV H I C A + G F
Sbjct: 11 QAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRI-CMAPSGSLYLQKGRLF 69
Query: 201 DSLTQLIEHY 210
L +L+ +Y
Sbjct: 70 PGLEELLAYY 79
>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in
SH2 domain-containing adapter proteins B, D, E, and F
(SHB, SHD, SHE, SHF). SHB, SHD, SHE, and SHF are SH2
domain-containing proteins that play various roles
throughout the cell. SHB functions in generating
signaling compounds in response to tyrosine kinase
activation. SHB contains proline-rich motifs, a
phosphotyrosine binding (PTB) domain, tyrosine
phosphorylation sites, and a SH2 domain. SHB mediates
certain aspects of platelet-derived growth factor (PDGF)
receptor-, fibroblast growth factor (FGF) receptor-,
neural growth factor (NGF) receptor TRKA-, T cell
receptor-, interleukin-2 (IL-2) receptor- and focal
adhesion kinase- (FAK) signaling. SRC-like FYN-Related
Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB
regulate apoptosis, proliferation and differentiation.
SHB promotes apoptosis and is also required for proper
mitogenicity, spreading and tubular morphogenesis in
endothelial cells. SHB also plays a role in preventing
early cavitation of embryoid bodies and reduces
differentiation to cells expressing albumin, amylase,
insulin and glucagon. SHB is a multifunctional protein
that has difference responses in different cells under
various conditions. SHE is expressed in heart, lung,
brain, and skeletal muscle, while expression of SHD is
restricted to the brain. SHF is mainly expressed in
skeletal muscle, brain, liver, prostate, testis, ovary,
small intestine, and colon. SHD may be a physiological
substrate of c-Abl and may function as an adapter
protein in the central nervous system. It is also
thought to be involved in apoptotic regulation. SHD
contains five YXXP motifs, a substrate sequence
preferred by Abl tyrosine kinases, in addition to a
poly-proline rich region and a C-terminal SH2 domain.
SHE contains two pTry protein binding domains, protein
interaction domain (PID) and a SH2 domain, followed by a
glycine-proline rich region, all of which are N-terminal
to the phosphotyrosine binding (PTB) domain. SHF
contains four putative tyrosine phosphorylation sites
and an SH2 domain. In general SH2 domains are involved
in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 98
Score = 54.4 bits (131), Expect = 2e-09
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 6 WFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
W+H +I+ +EAE LL R +GS+LVR S S D++LS++ H++IQ
Sbjct: 3 WYHGAITRIEAESLL--RPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRNETGQY 60
Query: 65 LYG--GEKFATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
+ G F T+ E+++ Y N +L R E + L P+
Sbjct: 61 ILGQFSRPFETIPEMIRHYCLN--KLPVRGAEHMCLLEPV 98
Score = 52.4 bits (126), Expect = 1e-08
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG ++ EAE L L+ K GS+LVR S+S D+
Sbjct: 3 WYHGAITRIEAESL------------------------LRPCKEGSYLVRNSESTKQDYS 38
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVGGGEQ-FDSLTQLIEHYKRNPM 215
LS+++ H+ I R + +Y +G + F+++ ++I HY N +
Sbjct: 39 LSLKSAKGFMHMRIQRNETGQYILGQFSRPFETIPEMIRHYCLNKL 84
>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the
Vav family. Vav proteins are involved in several
processes that require cytoskeletal reorganization,
such as the formation of the immunological synapse
(IS), phagocytosis, platelet aggregation, spreading,
and transformation. Vavs function as guanine
nucleotide exchange factors (GEFs) for the Rho/Rac
family of GTPases. Vav family members have several
conserved motifs/domains including: a leucine-rich
region, a leucine-zipper, a calponin homology (CH)
domain, an acidic domain, a Dbl-homology (DH) domain, a
pleckstrin homology (PH) domain, a cysteine-rich
domain, 2 SH3 domains, a proline-rich region, and a
SH2 domain. Vavs are the only known Rho GEFs that have
both the DH/PH motifs and SH2/SH3 domains in the same
protein. The leucine-rich helix-loop-helix (HLH) domain
is thought to be involved in protein heterodimerization
with other HLH proteins and it may function as a
negative regulator by forming inactive heterodimers.
The CH domain is usually involved in the association
with filamentous actin, but in Vav it controls NFAT
stimulation, Ca2+ mobilization, and its transforming
activity. Acidic domains are involved in
protein-protein interactions and contain regulatory
tyrosines. The DH domain is a GDP-GTP exchange factor
on Rho/Rac GTPases. The PH domain in involved in
interactions with GTP-binding proteins, lipids and/or
phosphorylated serine/threonine residues. The SH3
domain is involved in localization of proteins to
specific sites within the cell interacting with protein
with proline-rich sequences. The SH2 domain mediates a
high affinity interaction with tyrosine phosphorylated
proteins. There are three Vav mammalian family
members: Vav1 which is expressed in the hematopoietic
system, Vav2 and Vav3 are more ubiquitously expressed.
The members here include insect and amphibian Vavs. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 102
Score = 53.5 bits (129), Expect = 4e-09
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI-QNTGDCY 63
WF + AE L R DG++LVR + LS++ NG+V H+KI Q + Y
Sbjct: 6 LWFVGEMERDTAENRLENRP-DGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGLY 64
Query: 64 DLYGGEKFATLSELVQFYMEN 84
L F +L ELV +Y N
Sbjct: 65 YLSESRHFKSLVELVNYYERN 85
Score = 47.3 bits (113), Expect = 5e-07
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 144 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDS 202
AE L+ +G++LVR + LS++ + V H+ I + Y + F S
Sbjct: 16 TAENR-LENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGLYYLSESRHFKS 74
Query: 203 LTQLIEHYKRNPMVETSGTV-VHLKQPF 229
L +L+ +Y+RN + E + LK P+
Sbjct: 75 LVELVNYYERNSLGENFAGLDTTLKWPY 102
>gnl|CDD|198276 cd10413, SH2_Grb7, Src homology 2 (SH2) domain found in the growth
factor receptor bound, subclass 7 (Grb7) proteins. The
Grb family binds to the epidermal growth factor receptor
(EGFR, erbB1) via their SH2 domains. Grb7 is part of the
Grb7 family of proteins which also includes Grb10, and
Grb14. They are composed of an N-terminal Proline-rich
domain, a Ras Associating-like (RA) domain, a Pleckstrin
Homology (PH) domain, a phosphotyrosine interaction
region (PIR, BPS) and a C-terminal SH2 domain. The SH2
domains of Grb7, Grb10 and Grb14 preferentially bind to
a different RTK. Grb7 binds strongly to the erbB2
receptor, unlike Grb10 and Grb14 which bind weakly to
it. Grb7 family proteins are phosphorylated on
serine/threonine as well as tyrosine residues. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 108
Score = 53.4 bits (128), Expect = 6e-09
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 27/110 (24%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
T+ WFHG++S +E+++LI Q+G LV +G FLVRESQ P
Sbjct: 4 TQPWFHGRISREESQRLIGQQG-----LV-----------------DGVFLVRESQRNPQ 41
Query: 169 DFVLSVRTDDKVTHVMIRCQAEK----YDVGGGE-QFDSLTQLIEHYKRN 213
FVLS+ KV H +I E+ + + G+ +F L QL+E ++ N
Sbjct: 42 GFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 91
Score = 48.4 bits (115), Expect = 3e-07
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 3 SRRWFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGD 61
++ WFH IS E++ L+ ++G DG FLVR S+ NP F LS+ +V H I + +
Sbjct: 4 TQPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEE 63
Query: 62 CYDLY-----GGEKFATLSELVQFYMENQGQL 88
LY G +F L +LV+F+ N+G L
Sbjct: 64 EGRLYFSMDDGQTRFTDLLQLVEFHQLNRGIL 95
>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the
growth factor receptor bound, subclass 10 (Grb10)
proteins. The Grb family binds to the epidermal growth
factor receptor (EGFR, erbB1) via their SH2 domains.
Grb10 is part of the Grb7 family of proteins which also
includes Grb7, and Grb14. They are composed of an
N-terminal Proline-rich domain, a Ras Associating-like
(RA) domain, a Pleckstrin Homology (PH) domain, a
phosphotyrosine interaction region (PIR, BPS) and a
C-terminal SH2 domain. The SH2 domains of Grb7, Grb10
and Grb14 preferentially bind to a different RTK. Grb10
has been shown to interact with many different
proteins, including the insulin and IGF1 receptors,
platelet-derived growth factor (PDGF) receptor-beta,
Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 108
Score = 52.7 bits (126), Expect = 1e-08
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 3 SRRWFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGD 61
++ WFH IS E+ ++ ++G DG FL+R S+SNP F L++ + ++ + +I D
Sbjct: 4 TQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCED 63
Query: 62 CYDLY-----GGEKFATLSELVQFYMENQGQL 88
+ G KF+ L +LV FY N+G L
Sbjct: 64 DGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVL 95
Score = 50.8 bits (121), Expect = 5e-08
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 27/110 (24%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
T+ WFHG++S +E+ ++I Q+G +G FL+R+SQS P
Sbjct: 4 TQHWFHGRISREESHRIIKQQGL----------------------VDGLFLLRDSQSNPK 41
Query: 169 DFVLSVRTDDKVTHVMIRCQAEKYDV-----GGGEQFDSLTQLIEHYKRN 213
FVL++ K+ + I + G +F L QL++ Y+ N
Sbjct: 42 AFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQLN 91
>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the
Fyn-related kinase (Frk). Frk is a member of the Src
non-receptor type tyrosine kinase family of proteins.
The Frk subfamily is composed of Frk/Rak and
Iyk/Bsk/Gst. It is expressed primarily epithelial cells.
Frk is a nuclear protein and may function during G1 and
S phase of the cell cycle and suppress growth. Unlike
the other Src members it lacks a glycine at position 2
of SH4 which is important for addition of a myristic
acid moiety that is involved in targeting Src PTKs to
cellular membranes. FRK and SHB exert similar effects
when overexpressed in rat phaeochromocytoma (PC12) and
beta-cells, where both induce PC12 cell differentiation
and beta-cell proliferation. Under conditions that cause
beta-cell degeneration these proteins augment beta-cell
apoptosis. The FRK-SHB responses involve FAK and insulin
receptor substrates (IRS) -1 and -2. Frk has been
demonstrated to interact with retinoblastoma protein.
Frk regulates PTEN protein stability by phosphorylating
PTEN, which in turn prevents PTEN degradation. Frk also
plays a role in regulation of embryonal pancreatic beta
cell formation. Frk has a unique N-terminal domain, an
SH3 domain, an SH2 domain, a kinase domain and a
regulatory tail, as do the other members of the family.
Like the other members of the Src family the SH2 domain
in addition to binding the target, also plays an
autoinhibitory role by binding to its activation loop.
The tryosine involved is at the same site as the
tyrosine involved in the autophosphorylation of Src. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 96
Score = 52.2 bits (125), Expect = 1e-08
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 27/120 (22%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E WF G + +AE+ QL+ + + G+FL+RES+S+ G+
Sbjct: 3 EPWFFGAIKRADAEK----------------------QLLYSENQTGAFLIRESESQKGE 40
Query: 170 FVLSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 228
F LSV V H I R + + + F +L + + +Y + G V L +P
Sbjct: 41 FSLSVLDGGVVKHYRIRRLDEGGFFLTRRKTFSTLNEFVNYYTTT----SDGLCVKLGKP 96
Score = 48.3 bits (115), Expect = 3e-07
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 6 WFHPSISGVEAE-VLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQN-TGDCY 63
WF +I +AE LL G+FL+R S S G+F+LSV G V H +I+ +
Sbjct: 5 WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRLDEGGF 64
Query: 64 DLYGGEKFATLSELVQFYMENQGQL 88
L + F+TL+E V +Y L
Sbjct: 65 FLTRRKTFSTLNEFVNYYTTTSDGL 89
>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain
found in p85. Phosphoinositide 3-kinases (PI3Ks) are
essential for cell growth, migration, and survival.
p110, the catalytic subunit, is composed of an
adaptor-binding domain, a Ras-binding domain, a C2
domain, a helical domain, and a kinase domain. The
regulatory unit is called p85 and is composed of an SH3
domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain,
an internal SH2 (iSH2) domain, and C-terminal (cSH2)
domain. There are 2 inhibitory interactions between
p110alpha and p85 of P13K: (1) p85 nSH2 domain with the
C2, helical, and kinase domains of p110alpha and (2) p85
iSH2 domain with C2 domain of p110alpha. There are 3
inhibitory interactions between p110beta and p85 of
P13K: (1) p85 nSH2 domain with the C2, helical, and
kinase domains of p110beta, (2) p85 iSH2 domain with C2
domain of p110alpha, and (3) p85 cSH2 domain with the
kinase domain of p110alpha. It is interesting to note
that p110beta is oncogenic as a wild type protein while
p110alpha lacks this ability. One explanation is the
idea that the regulation of p110beta by p85 is unique
because of the addition of inhibitory contacts from the
cSH2 domain and the loss of contacts in the iSH2 domain.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 110
Score = 51.9 bits (125), Expect = 2e-08
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 26 DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFATLSELVQFYMENQ 85
DG+FLVR + + GD+TL++R G IKI + Y F ++ EL+ +Y N
Sbjct: 28 DGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFNSVVELINYYRNN- 86
Query: 86 GQLKKRNQEV-IELKYPLS 103
L + N+++ ++L YP+S
Sbjct: 87 -SLAEYNRKLDVKLLYPVS 104
Score = 50.0 bits (120), Expect = 9e-08
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 142 SKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD 201
S+E ++ +G+FLVR++ + GD+ L++R + I + KY F+
Sbjct: 15 SREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFN 74
Query: 202 SLTQLIEHYKRNPMVE 217
S+ +LI +Y+ N + E
Sbjct: 75 SVVELINYYRNNSLAE 90
>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec
protein, IL2-inducible T-cell kinase (Itk). A member of
the Tec protein tyrosine kinase Itk is expressed thymus,
spleen, lymph node, T lymphocytes, NK and mast cells. It
plays a role in T-cell proliferation and
differentiation, analogous to Tec family kinases Txk.
Itk has been shown to interact with Fyn,
Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1,
Lymphocyte cytosolic protein 2, Linker of activated T
cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl
isomerase A. Most of the Tec family members have a PH
domain (Txk and the short (type 1) splice variant of
Drosophila Btk29A are exceptions), a Tec homology (TH)
domain, a SH3 domain, a SH2 domain, and a protein kinase
catalytic domain. The TH domain consists of a
Zn2+-binding Btk motif and a proline-rich region. The
Btk motif is found in Tec kinases, Ras GAP, and IGBP. It
is crucial for the function of Tec PH domains and it's
lack of presence in Txk is not surprising since it lacks
a PH domain. The type 1 splice form of the Drosophila
homolog also lacks both the PH domain and the Btk motif.
The proline-rich regions are highly conserved for the
most part with the exception of Bmx whose residues
surrounding the PXXP motif are not conserved (TH-like)
and Btk29A which is entirely unique with large numbers
of glycine residues (TH-extended). Tec family members
all lack a C-terminal tyrosine having an autoinhibitory
function in its phosphorylated state. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 108
Score = 51.7 bits (124), Expect = 2e-08
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRL------NGEVTHIKIQNT 59
W++ +I+ +AE LL + G +G F+VR S PG +T+S+ N + H I+ T
Sbjct: 8 WYNKNINRSKAEKLLRDEGKEGGFMVRDSS-QPGLYTVSLYTKAGGEGNPCIRHYHIKET 66
Query: 60 GDC-YDLYGGEK--FATLSELVQFYMENQGQLKKRNQEVIELKYPLSC 104
D Y EK F ++ EL++++ N L R L+YP+S
Sbjct: 67 NDSPKKYYLAEKHVFNSIPELIEYHKHNAAGLVTR------LRYPVSS 108
Score = 37.5 bits (87), Expect = 0.002
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 37/127 (29%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W++ ++ +AE+L+ +GK G F+VR+S S+PG +
Sbjct: 8 WYNKNINRSKAEKLLRDEGKEGGFMVRDS------------------------SQPGLYT 43
Query: 172 LSVRT------DDKVTHVMIR---CQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTV 222
+S+ T + + H I+ +KY + F+S+ +LIE++K N +G V
Sbjct: 44 VSLYTKAGGEGNPCIRHYHIKETNDSPKKYYLAEKHVFNSIPELIEYHKHN----AAGLV 99
Query: 223 VHLKQPF 229
L+ P
Sbjct: 100 TRLRYPV 106
>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2
domain containing protein 4B (SH2D4B). SH2D4B contains
a single SH2 domain. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 51.4 bits (123), Expect = 2e-08
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
WFH IS EAE LL+ +GSFLVR S G +TLS RL H + +GD Y
Sbjct: 9 WFHGIISREEAEALLMNAT-EGSFLVRVSEKIWG-YTLSYRLQSGFKHFLVDASGDFYSF 66
Query: 66 YGGE--KFATLSELVQFYME 83
G + + ATL++L+ F+ E
Sbjct: 67 LGVDPNRHATLTDLIDFHKE 86
Score = 37.2 bits (86), Expect = 0.002
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 28/111 (25%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG +S +EAE L++ + GSFLVR S+ G +
Sbjct: 9 WFHGIISREEAEALLMNATE------------------------GSFLVRVSEKIWG-YT 43
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVGGGEQ--FDSLTQLIEHYKRNPMVETSG 220
LS R H ++ + Y G + +LT LI+ +K ++ TSG
Sbjct: 44 LSYRLQSGFKHFLVDASGDFYSFLGVDPNRHATLTDLIDFHKEE-IITTSG 93
>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte
cell kinase (Lck). Lck is a member of the Src
non-receptor type tyrosine kinase family of proteins. It
is expressed in the brain, T-cells, and NK cells. The
unique domain of Lck mediates its interaction with two
T-cell surface molecules, CD4 and CD8. It associates
with their cytoplasmic tails on CD4 T helper cells and
CD8 cytotoxic T cells to assist signaling from the T
cell receptor (TCR) complex. When the T cell receptor is
engaged by the specific antigen presented by MHC, Lck
phosphorylase the intracellular chains of the CD3 and
zeta-chains of the TCR complex, allowing ZAP-70 to bind
them. Lck then phosphorylates and activates ZAP-70,
which in turn phosphorylates Linker of Activated T cells
(LAT), a transmembrane protein that serves as a docking
site for proteins including: Shc-Grb2-SOS, PI3K, and
phospholipase C (PLC). The tyrosine phosphorylation
cascade culminates in the intracellular mobilization of
a calcium ions and activation of important signaling
cascades within the lymphocyte, including the
Ras-MEK-ERK pathway, which goes on to activate certain
transcription factors such as NFAT, NF-kappaB, and AP-1.
These transcription factors regulate the production
cytokines such as Interleukin-2 that promote long-term
proliferation and differentiation of the activated
lymphocytes. The N-terminal tail of Lck is
myristoylated and palmitoylated and it tethers the
protein to the plasma membrane of the cell. Lck also
contains a SH3 domain, a SH2 domain, and a C-terminal
tyrosine kinase domain. Lck has 2 phosphorylation sites,
the first an autophosphorylation site that is linked to
activation of the protein and the second which is
phosphorylated by Csk, which inhibits it. Lck is also
inhibited by SHP-1 dephosphorylation and by Cbl
ubiquitin ligase, which is part of the
ubiquitin-mediated pathway. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 51.0 bits (122), Expect = 3e-08
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 40/130 (30%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
E WF LS +AE+ QL+ +GSFL+RES++ G
Sbjct: 2 PEPWFFKNLSRNDAER----------------------QLLAPGNTHGSFLIRESETTAG 39
Query: 169 DFVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHYKRNPMVET 218
F LSVR + V H IR D GG F L +L+ HY +
Sbjct: 40 SFSLSVRDFDQNQGEVVKHYKIR----NLDNGGFYISPRITFPGLHELVRHYTN----AS 91
Query: 219 SGTVVHLKQP 228
G L +P
Sbjct: 92 DGLCTRLSRP 101
Score = 46.8 bits (111), Expect = 9e-07
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 6 WFHPSISGVEAEVLLLERG-YDGSFLVRPSRSNPGDFTLSVR----LNGE-VTHIKIQNT 59
WF ++S +AE LL G GSFL+R S + G F+LSVR GE V H KI+N
Sbjct: 5 WFFKNLSRNDAERQLLAPGNTHGSFLIRESETTAGSFSLSVRDFDQNQGEVVKHYKIRNL 64
Query: 60 GDCYDLYGGEK--FATLSELVQFY 81
D Y + F L ELV+ Y
Sbjct: 65 -DNGGFYISPRITFPGLHELVRHY 87
>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in
Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene
homolog, Fgr. Fgr is a member of the Src non-receptor
type tyrosine kinase family of proteins. The protein
contains N-terminal sites for myristoylation and
palmitoylation, a PTK domain, and SH2 and SH3 domains
which are involved in mediating protein-protein
interactions with phosphotyrosine-containing and
proline-rich motifs, respectively. Fgr is expressed in
B-cells and myeloid cells, localizes to plasma membrane
ruffles, and functions as a negative regulator of cell
migration and adhesion triggered by the beta-2 integrin
signal transduction pathway. Multiple alternatively
spliced variants, encoding the same protein, have been
identified Fgr has been shown to interact with
Wiskott-Aldrich syndrome protein. Fgr has a unique
N-terminal domain, an SH3 domain, an SH2 domain, a
kinase domain and a regulatory tail, as do the other
members of the family. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 50.7 bits (121), Expect = 3e-08
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 36/111 (32%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E W+ G++ K+AE+ +L G G+FL+RES++ G
Sbjct: 3 EEWYFGKIGRKDAERQLLSPGN----------------------PRGAFLIRESETTKGA 40
Query: 170 FVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHY 210
+ LS+R D V H IR K D GG QFD++ +L++HY
Sbjct: 41 YSLSIRDWDQNRGDHVKHYKIR----KLDTGGYYITTRAQFDTVQELVQHY 87
Score = 41.8 bits (98), Expect = 6e-05
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 3 SRRWFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVR-----LNGEVTHIKI 56
+ W+ I +AE LL G G+FL+R S + G ++LS+R V H KI
Sbjct: 2 AEEWYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKI 61
Query: 57 Q--NTGDCYDLYGGEKFATLSELVQFYME 83
+ +TG Y + +F T+ ELVQ YME
Sbjct: 62 RKLDTGGYY-ITTRAQFDTVQELVQHYME 89
>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor
protein C (SHC). SHC is involved in a wide variety of
pathways including regulating proliferation,
angiogenesis, invasion and metastasis, and bone
metabolism. An adapter protein, SHC has been implicated
in Ras activation following the stimulation of a number
of different receptors, including growth factors
[insulin, epidermal growth factor (EGF), nerve growth
factor, and platelet derived growth factor (PDGF)],
cytokines [interleukins 2, 3, and 5], erythropoietin,
and granulocyte/macrophage colony-stimulating factor,
and antigens [T-cell and B-cell receptors]. SHC has been
shown to bind to tyrosine-phosphorylated receptors, and
receptor stimulation leads to tyrosine phosphorylation
of SHC. Upon phosphorylation, SHC interacts with another
adapter protein, Grb2, which binds to the Ras GTP/GDP
exchange factor mSOS which leads to Ras activation. SHC
is composed of an N-terminal domain that interacts with
proteins containing phosphorylated tyrosines, a
(glycine/proline)-rich collagen-homology domain that
contains the phosphorylated binding site, and a
C-terminal SH2 domain. SH2 has been shown to interact
with the tyrosine-phosphorylated receptors of EGF and
PDGF and with the tyrosine-phosphorylated C chain of the
T-cell receptor, providing one of the mechanisms of
T-cell-mediated Ras activation. In general SH2 domains
are involved in signal transduction. They typically
bind pTyr-containing ligands via two surface pockets, a
pTyr and hydrophobic binding pocket, allowing proteins
with SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 104
Score = 50.4 bits (121), Expect = 5e-08
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 64/140 (45%)
Query: 108 TTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKP 167
E W+HG++S ++AE L LQ +G FLVRES + P
Sbjct: 5 RGEPWYHGKMSRRDAESL------------------------LQT--DGDFLVRESTTTP 38
Query: 168 GDFVLS------------------VRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEH 209
G +VL+ VRT D+V F+S++ LI +
Sbjct: 39 GQYVLTGMQNGQPKHLLLVDPEGVVRTKDRV-------------------FESISHLINY 79
Query: 210 YKRNPM-VETSGTVVHLKQP 228
+ N + + + G+ +HL++P
Sbjct: 80 HVTNGLPIISEGSELHLRRP 99
Score = 47.3 bits (113), Expect = 6e-07
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHI------KIQNT 59
W+H +S +AE LL DG FLVR S + PG + L+ NG+ H+ + T
Sbjct: 9 WYHGKMSRRDAESLL---QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLLLVDPEGVVRT 65
Query: 60 GDCYDLYGGEKFATLSELVQFYMEN 84
D F ++S L+ +++ N
Sbjct: 66 KD-------RVFESISHLINYHVTN 83
>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3
proteins. Proto-oncogene vav is a member of the Dbl
family of guanine nucleotide exchange factors (GEF) for
the Rho family of GTP binding proteins. All vavs are
activated by tyrosine phosphorylation leading to their
activation. There are three Vav mammalian family
members: Vav1 which is expressed in the hematopoietic
system, and Vav2 and Vav3 are more ubiquitously
expressed. Vav3 preferentially activates RhoA, RhoG
and, to a lesser extent, Rac1. Alternatively spliced
transcript variants encoding different isoforms have
been described for this gene. VAV3 has been shown to
interact with Grb2. Vav proteins are involved in
several processes that require cytoskeletal
reorganization, such as the formation of the
immunological synapse (IS), phagocytosis, platelet
aggregation, spreading, and transformation. Vavs
function as guanine nucleotide exchange factors (GEFs)
for the Rho/Rac family of GTPases. Vav family members
have several conserved motifs/domains including: a
leucine-rich region, a leucine-zipper, a calponin
homology (CH) domain, an acidic domain, a Dbl-homology
(DH) domain, a pleckstrin homology (PH) domain, a
cysteine-rich domain, 2 SH3 domains, a proline-rich
region, and a SH2 domain. Vavs are the only known Rho
GEFs that have both the DH/PH motifs and SH2/SH3
domains in the same protein. The leucine-rich
helix-loop-helix (HLH) domain is thought to be involved
in protein heterodimerization with other HLH proteins
and it may function as a negative regulator by forming
inactive heterodimers. The CH domain is usually
involved in the association with filamentous actin, but
in Vav it controls NFAT stimulation, Ca2+ mobilization,
and its transforming activity. Acidic domains are
involved in protein-protein interactions and contain
regulatory tyrosines. The DH domain is a GDP-GTP
exchange factor on Rho/Rac GTPases. The PH domain in
involved in interactions with GTP-binding proteins,
lipids and/or phosphorylated serine/threonine residues.
The SH3 domain is involved in localization of proteins
to specific sites within the cell interacting with
protein with proline-rich sequences. The SH2 domain
mediates a high affinity interaction with tyrosine
phosphorylated proteins. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 50.4 bits (120), Expect = 5e-08
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGD 61
S + W+ ++ ++AE L+ R + ++LVR G++ +S++ N EV HIKI
Sbjct: 3 SCQPWYAGAMERLQAETELINR-VNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDG 61
Query: 62 CYDLYGGEKFATLSELVQFY 81
+ + KF +L ELV++Y
Sbjct: 62 FFHIAENRKFKSLMELVEYY 81
Score = 38.8 bits (90), Expect = 7e-04
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 155 NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNP 214
N ++LVR + G++ +S++ +++V H+ I + + + +F SL +L+E+YK +
Sbjct: 26 NSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIAENRKFKSLMELVEYYKHHS 85
Query: 215 MVE 217
+ E
Sbjct: 86 LKE 88
>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain
found in Fyn isoform a like proteins. Fyn is a member
of the Src non-receptor type tyrosine kinase family of
proteins. This cd contains the SH2 domain found in Fyn
isoform a type proteins. Fyn is involved in the control
of cell growth and is required in the following
pathways: T and B cell receptor signaling,
integrin-mediated signaling, growth factor and cytokine
receptor signaling, platelet activation, ion channel
function, cell adhesion, axon guidance, fertilization,
entry into mitosis, and differentiation of natural
killer cells, oligodendrocytes and keratinocytes. The
protein associates with the p85 subunit of
phosphatidylinositol 3-kinase and interacts with the
Fyn-binding protein. Alternatively spliced transcript
variants encoding distinct isoforms exist. Fyn is
primarily localized to the cytoplasmic leaflet of the
plasma membrane. Tyrosine phosphorylation of target
proteins by Fyn serves to either regulate target protein
activity, and/or to generate a binding site on the
target protein that recruits other signaling molecules.
FYN has been shown to interact with a number of proteins
including: BCAR1, Cbl, Janus kinase, nephrin, Sky,
tyrosine kinase, Wiskott-Aldrich syndrome protein, and
Zap-70. Fyn has a unique N-terminal domain, an SH3
domain, an SH2 domain, a kinase domain and a regulatory
tail, as do the other members of the family. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 50.0 bits (119), Expect = 7e-08
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 36/111 (32%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E W+ G+L K+AE+ +L G G+FL+RES++ G
Sbjct: 3 EEWYFGKLGRKDAERQLLSFGN----------------------PRGTFLIRESETTKGA 40
Query: 170 FVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHY 210
+ LS+R D V H IR K D GG QF++L QL++HY
Sbjct: 41 YSLSIRDWDDMKGDHVKHYKIR----KLDNGGYYITTRAQFETLQQLVQHY 87
Score = 38.4 bits (89), Expect = 8e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 3 SRRWFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVR----LNGE-VTHIKI 56
+ W+ + +AE LL G G+FL+R S + G ++LS+R + G+ V H KI
Sbjct: 2 AEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKI 61
Query: 57 QNTGD-CYDLYGGEKFATLSELVQFYMENQGQL 88
+ + Y + +F TL +LVQ Y E L
Sbjct: 62 RKLDNGGYYITTRAQFETLQQLVQHYSERAAGL 94
>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec
protein, Bruton's tyrosine kinase (Btk). A member of
the Tec protein tyrosine kinase Btk is expressed in bone
marrow, spleen, all hematopoietic cells except T
lymphocytes and plasma cells where it plays a crucial
role in B cell maturation and mast cell activation. Btk
has been shown to interact with GNAQ, PLCG2, protein
kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A,
and GTF2I. Most of the Tec family members have a PH
domain (Txk and the short (type 1) splice variant of
Drosophila Btk29A are exceptions), a Tec homology (TH)
domain, a SH3 domain, a SH2 domain, and a protein kinase
catalytic domain. Btk is implicated in the primary
immunodeficiency disease X-linked agammaglobulinemia
(Bruton's agammaglobulinemia). The TH domain consists
of a Zn2+-binding Btk motif and a proline-rich region.
The Btk motif is found in Tec kinases, Ras GAP, and
IGBP. It is crucial for the function of Tec PH domains
and it's lack of presence in Txk is not surprising since
it lacks a PH domain. The type 1 splice form of the
Drosophila homolog also lacks both the PH domain and the
Btk motif. The proline-rich regions are highly
conserved for the most part with the exception of Bmx
whose residues surrounding the PXXP motif are not
conserved (TH-like) and Btk29A which is entirely unique
with large numbers of glycine residues (TH-extended).
Tec family members all lack a C-terminal tyrosine having
an autoinhibitory function in its phosphorylated state.
Two tyrosine phosphorylation (pY) sites have been
identified in Btk: one located in the activation loop of
the catalytic domain which regulates the transition
between open (active) and closed (inactive) states and
the other in its SH3 domain. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 106
Score = 49.4 bits (118), Expect = 1e-07
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSV------RLNGEVTHIKIQNT 59
W+ +++ +AE LL + G +G F+VR S S G +T+SV G + H + +T
Sbjct: 8 WYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIRHYVVCST 66
Query: 60 -GDCYDLYGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPLSC 104
Y L F+T+ EL+ ++ N L R LKYP+S
Sbjct: 67 PQSQYYLAEKHLFSTIPELINYHQHNAAGLISR------LKYPVSS 106
Score = 37.5 bits (87), Expect = 0.002
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 35/124 (28%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+ ++ +AEQL+ Q+GK G F+VR+S SK G +
Sbjct: 8 WYSKNMTRSQAEQLLKQEGKEGGFIVRDS------------------------SKAGKYT 43
Query: 172 LSV------RTDDKVTHVMIRC-QAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVH 224
+SV + H ++ +Y + F ++ +LI +++ N +G +
Sbjct: 44 VSVFAKSAGDPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHN----AAGLISR 99
Query: 225 LKQP 228
LK P
Sbjct: 100 LKYP 103
>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes.
Yes is a member of the Src non-receptor type tyrosine
kinase family of proteins. Yes is the cellular homolog
of the Yamaguchi sarcoma virus oncogene. In humans it is
encoded by the YES1 gene which maps to chromosome 18 and
is in close proximity to thymidylate synthase. A
corresponding Yes pseudogene has been found on
chromosome 22. YES1 has been shown to interact with
Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a
unique N-terminal domain, an SH3 domain, an SH2 domain,
a kinase domain and a regulatory tail, as do the other
members of the family. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 49.2 bits (117), Expect = 1e-07
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 36/111 (32%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E W+ G++ K+AE+L+L G + G FLVRES++ G
Sbjct: 3 EEWYFGKMGRKDAERLLLNPGN----------------------QRGIFLVRESETTKGA 40
Query: 170 FVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHY 210
+ LS+R D V H IR K D GG QFD+L +L++HY
Sbjct: 41 YSLSIRDWDEVRGDNVKHYKIR----KLDNGGYYITTRAQFDTLQKLVKHY 87
Score = 37.3 bits (86), Expect = 0.002
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 3 SRRWFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVR----LNGE-VTHIKI 56
+ W+ + +AE LLL G G FLVR S + G ++LS+R + G+ V H KI
Sbjct: 2 AEEWYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKI 61
Query: 57 QNTGD-CYDLYGGEKFATLSELVQFYMENQGQLKKR 91
+ + Y + +F TL +LV+ Y E+ L +
Sbjct: 62 RKLDNGGYYITTRAQFDTLQKLVKHYTEHADGLCHK 97
>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) proteins. SH2
domain found in SOCS proteins. SOCS was first
recognized as a group of cytokine-inducible SH2 (CIS)
domain proteins comprising eight family members in
human (CIS and SOCS1-SOCS7). In addition to the SH2
domain, SOCS proteins have a variable N-terminal domain
and a conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation.
Loss of SOCS activity results in excessive cytokine
signaling associated with a variety of hematopoietic,
autoimmune, and inflammatory diseases and certain
cancers. Members (SOCS4-SOCS7) were identified by their
conserved SOCS box, an adapter motif of 3 helices that
associates substrate binding domains, such as the SOCS
SH2 domain, ankryin, and WD40 with ubiquitin ligase
components. These show limited cytokine induction. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 101
Score = 48.5 bits (116), Expect = 2e-07
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+ +S +AE +L + DGSFLVR S + F+LS R G V H +I+ + L
Sbjct: 12 WYWGPMSWEDAEKVLSNKP-DGSFLVRDSSDDRYIFSLSFRSQGSVHHTRIEQYQGTFSL 70
Query: 66 YGGEKFATLSE-LVQF 80
KF S+ LV+F
Sbjct: 71 GSRNKFVDRSQSLVEF 86
Score = 39.6 bits (93), Expect = 3e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 142 SKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD 201
++AE+++ K +GSFLVR+S F LS R+ V H I + +G +F
Sbjct: 19 WEDAEKVLSNK-PDGSFLVRDSSDDRYIFSLSFRSQGSVHHTRIEQYQGTFSLGSRNKFV 77
Query: 202 ----SLTQLIE 208
SL + IE
Sbjct: 78 DRSQSLVEFIE 88
>gnl|CDD|198219 cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domain found in SH2
domain-bearing protein kinases A and C (ShkA and ShkC).
SH2-bearing genes cloned from Dictyostelium include
two transcription factors, STATa and STATc, and a
signaling factor, SHK1 (shkA). A database search of the
Dictyostelium discoideum genome revealed two additional
putative STAT sequences, dd-STATb and dd-STATd, and
four additional putative SHK genes, dd-SHK2 (shkB),
dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE).
This model contains members of shkA and shkC. All of
the SHK members are most closely related to the protein
kinases found in plants. However these kinases in
plants are not conjugated to any SH2 or SH2-like
sequences. Alignment data indicates that the SHK SH2
domains carry some features of the STAT SH2 domains in
Dictyostelium. When STATc's linker domain was used for
a BLAST search, the sequence between the protein kinase
domain and the SH2 domain (the linker) of SHK was
recovered, suggesting a close relationship among these
molecules within this region. SHK's linker domain is
predicted to contain an alpha-helix which is indeed
homologous to that of STAT. Based on the phylogenetic
alignment, SH2 domains can be grouped into two
categories, STAT-type and Src-type. SHK family members
are in between, but are closer to the STAT-type which
indicates a close relationship between SHK and STAT
families in their SH2 domains and further supports the
notion that SHKs linker-SH2 domain evolved from STAT or
STATL (STAT-like Linker-SH2) domain found in plants. In
SHK, STAT, and SPT6, the linker-SH2 domains all reside
exclusively in the C-terminal regions. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 113
Score = 48.4 bits (115), Expect = 3e-07
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 3 SRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLS-VRLNGEVTHIKIQNTGD 61
WFH IS E+E L + +G+FLVR S S PG +T+S V NG ++H +I G
Sbjct: 9 ECAWFHGDISTSESENRLNGKP-EGTFLVRFSTSEPGAYTISKVSKNGGISHQRIHRPGG 67
Query: 62 CYDLYGGEKFATLSELV 78
+ K+ ++ EL+
Sbjct: 68 KFQ-VNNSKYLSVKELI 83
Score = 34.5 bits (79), Expect = 0.022
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 26/98 (26%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
WFHG +S E+E L G+FLVR S S+PG +
Sbjct: 11 AWFHGDISTSESENR------------------------LNGKPEGTFLVRFSTSEPGAY 46
Query: 171 VLS-VRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLI 207
+S V + ++H I K+ V ++ S+ +LI
Sbjct: 47 TISKVSKNGGISHQRIHRPGGKFQV-NNSKYLSVKELI 83
>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor
proteins. SLAP belongs to the subfamily of adapter
proteins that negatively regulate cellular signaling
initiated by tyrosine kinases. It has a myristylated
N-terminus, SH3 and SH2 domains with high homology to
Src family tyrosine kinases, and a unique C-terminal
tail, which is important for c-Cbl binding. SLAP
negatively regulates platelet-derived growth factor
(PDGF)-induced mitogenesis in fibroblasts and regulates
F-actin assembly for dorsal ruffles formation. c-Cbl
mediated SLAP inhibition towards actin remodeling.
Moreover, SLAP enhanced PDGF-induced c-Cbl
phosphorylation by SFK. In contrast, SLAP mitogenic
inhibition was not mediated by c-Cbl, but it rather
involved a competitive mechanism with SFK for
PDGF-receptor (PDGFR) association and mitogenic
signaling. Accordingly, phosphorylation of the Src
mitogenic substrates Stat3 and Shc were reduced by SLAP.
Thus, we concluded that SLAP regulates PDGFR signaling
by two independent mechanisms: a competitive mechanism
for PDGF-induced Src mitogenic signaling and a
non-competitive mechanism for dorsal ruffles formation
mediated by c-Cbl. SLAP is a hematopoietic adaptor
containing Src homology (SH)3 and SH2 motifs and a
unique carboxy terminus. Unlike c-Src, SLAP lacks a
tyrosine kinase domain. Unlike c-Src, SLAP does not
impact resorptive function of mature osteoclasts but
induces their early apoptosis. SLAP negatively regulates
differentiation of osteoclasts and proliferation of
their precursors. Conversely, SLAP decreases osteoclast
death by inhibiting activation of caspase 3. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 104
Score = 47.9 bits (114), Expect = 4e-07
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 140 SQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMI-RCQAEKYD 193
S+ K E L+L + GSFL+RES+++ G + LSVR + D V H I R +
Sbjct: 18 SREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIFRLDNGWFY 77
Query: 194 VGGGEQFDSLTQLIEHY 210
+ F L ++ HY
Sbjct: 78 ISPRLTFQCLEDMVNHY 94
Score = 45.9 bits (109), Expect = 2e-06
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 5 RWFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVRLNG-----EVTHIKIQN 58
W +S +AE LL+ G GSFL+R S + G ++LSVR G V H +I
Sbjct: 11 GWLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIFR 70
Query: 59 -TGDCYDLYGGEKFATLSELVQFYMENQGQL 88
+ + F L ++V Y E+ L
Sbjct: 71 LDNGWFYISPRLTFQCLEDMVNHYSESADGL 101
>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn.
Fyn is a member of the Src non-receptor type tyrosine
kinase family of proteins. Fyn is involved in the
control of cell growth and is required in the following
pathways: T and B cell receptor signaling,
integrin-mediated signaling, growth factor and cytokine
receptor signaling, platelet activation, ion channel
function, cell adhesion, axon guidance, fertilization,
entry into mitosis, and differentiation of natural
killer cells, oligodendrocytes and keratinocytes. The
protein associates with the p85 subunit of
phosphatidylinositol 3-kinase and interacts with the
Fyn-binding protein. Alternatively spliced transcript
variants encoding distinct isoforms exist. Fyn is
primarily localized to the cytoplasmic leaflet of the
plasma membrane. Tyrosine phosphorylation of target
proteins by Fyn serves to either regulate target protein
activity, and/or to generate a binding site on the
target protein that recruits other signaling molecules.
FYN has been shown to interact with a number of proteins
including: BCAR1, Cbl, Janus kinase, nephrin, Sky,
tyrosine kinase, Wiskott-Aldrich syndrome protein, and
Zap-70. Fyn has a unique N-terminal domain, an SH3
domain, an SH2 domain, a kinase domain and a regulatory
tail, as do the other members of the family. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 47.3 bits (112), Expect = 6e-07
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 36/111 (32%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E W+ G+L K+AE+ +L G G+FL+RES++ G
Sbjct: 3 EEWYFGKLGRKDAERQLLSFGN----------------------PRGTFLIRESETTKGA 40
Query: 170 FVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHY 210
+ LS+R D V H IR K D GG QF++L QL++HY
Sbjct: 41 YSLSIRDWDDMKGDHVKHYKIR----KLDNGGYYITTRAQFETLQQLVQHY 87
Score = 38.9 bits (90), Expect = 5e-04
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 2 SSRRWFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVR----LNGE-VTHIK 55
+ W+ + +AE LL G G+FL+R S + G ++LS+R + G+ V H K
Sbjct: 1 QAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYK 60
Query: 56 IQNTGD-CYDLYGGEKFATLSELVQFYMENQGQLKKR 91
I+ + Y + +F TL +LVQ Y E L K
Sbjct: 61 IRKLDNGGYYITTRAQFETLQQLVQHYSETANGLCKV 97
>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain
containing protein 7 (SH2D7). SH2D7 contains a single
SH2 domain. In general SH2 domains are involved in
signal transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 102
Score = 47.2 bits (112), Expect = 7e-07
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 27/107 (25%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
WFHG ++ K+ EQL+ K GSFL+R S G +
Sbjct: 8 PWFHGFITRKQTEQLLRDKAL------------------------GSFLIRLSDRATG-Y 42
Query: 171 VLSVRTDDKVTHVMI-RCQAEKYDVGGGEQ-FDSLTQLIEHYKRNPM 215
+LS R D+ H +I + + +Y + G +L +L+ HY+ +
Sbjct: 43 ILSYRGSDRCRHFVINQLRNRRYLISGDTSSHSTLAELVRHYQEVQL 89
Score = 44.1 bits (104), Expect = 9e-06
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI-QNTGDCY 63
WFH I+ + E LL ++ GSFL+R S G + LS R + H I Q Y
Sbjct: 8 PWFHGFITRKQTEQLLRDKAL-GSFLIRLSDRATG-YILSYRGSDRCRHFVINQLRNRRY 65
Query: 64 DLYGGEK--FATLSELVQFYMENQ 85
L G+ +TL+ELV+ Y E Q
Sbjct: 66 -LISGDTSSHSTLAELVRHYQEVQ 88
>gnl|CDD|198213 cd10350, SH2_SH2D4A, Src homology 2 domain found in the SH2 domain
containing protein 4A (SH2D4A). SH2D4A contains a
single SH2 domain. In general SH2 domains are involved
in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 46.8 bits (111), Expect = 1e-06
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 27/110 (24%)
Query: 108 TTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKP 167
T WFHG L+ K+A +L L GSFL+R S+
Sbjct: 5 TIAPWFHGILTLKKANEL------------------------LLSTMPGSFLIRVSEKIK 40
Query: 168 GDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD--SLTQLIEHYKRNPM 215
G + LS +++ H +I A+ Y G +Q +L L+E++K P+
Sbjct: 41 G-YALSYLSEEGCKHFLIDASADSYSFLGVDQLQHATLADLVEYHKEEPI 89
>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B
lymphoid kinase (Blk). Blk is a member of the Src
non-receptor type tyrosine kinase family of proteins.
Blk is expressed in the B-cells. Unlike most other Src
members Blk lacks cysteine residues in the SH4 domain
that undergo palmitylation. Blk is required for the
development of IL-17-producing gamma-delta T cells.
Furthermore, Blk is expressed in lymphoid precursors
and, in this capacity, plays a role in regulating thymus
cellularity during ontogeny. Blk has a unique N-terminal
domain, an SH3 domain, an SH2 domain, a kinase domain
and a regulatory tail, as do the other members of the
family. In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 100
Score = 46.2 bits (109), Expect = 1e-06
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 27/108 (25%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E+WF +S K+AE+ QL+ K GSFL+RES+S G
Sbjct: 3 EKWFFRTISRKDAER----------------------QLLAPMNKAGSFLIRESESNKGA 40
Query: 170 FVLSVR----TDDKVTHVMIRCQAE-KYDVGGGEQFDSLTQLIEHYKR 212
F LSV+ + V H IR Y + F +L L++HY +
Sbjct: 41 FSLSVKDVTTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSK 88
Score = 43.5 bits (102), Expect = 1e-05
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 5 RWFHPSISGVEAE-VLLLERGYDGSFLVRPSRSNPGDFTLSVR---LNGEVT-HIKIQNT 59
+WF +IS +AE LL GSFL+R S SN G F+LSV+ GEV H KI++
Sbjct: 4 KWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDVTTQGEVVKHYKIRSL 63
Query: 60 GD-CYDLYGGEKFATLSELVQFYMENQGQLKKR 91
+ Y + F TL LVQ Y + L ++
Sbjct: 64 DNGGYYISPRITFPTLQALVQHYSKKGDGLCQK 96
>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK.
HCK is a member of the Src non-receptor type tyrosine
kinase family of proteins and is expressed in
hemopoietic cells. HCK is proposed to couple the Fc
receptor to the activation of the respiratory burst. It
may also play a role in neutrophil migration and in the
degranulation of neutrophils. It has two different
translational starts that have different subcellular
localization. HCK has been shown to interact with BCR
gene, ELMO1 Cbl gene, RAS p21 protein activator 1,
RASA3, Granulocyte colony-stimulating factor receptor,
ADAM15 and RAPGEF1. Like the other members of the Src
family the SH2 domain in addition to binding the target,
also plays an autoinhibitory role by binding to its
C-terminal tail. In general SH2 domains are involved in
signal transduction. HCK has a unique N-terminal domain,
an SH3 domain, an SH2 domain, a kinase domain and a
regulatory tail, as do the other members of the family.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 104
Score = 46.1 bits (109), Expect = 2e-06
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 36/114 (31%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
TE WF +S K+AE+ +L G GSF++R+S++ G
Sbjct: 2 TEEWFFKGISRKDAERQLLAPGN----------------------MLGSFMIRDSETTKG 39
Query: 169 DFVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHYKR 212
+ LSVR D V H IR D GG F +L +L++HYK+
Sbjct: 40 SYSLSVRDYDPQHGDTVKHYKIR----TLDNGGFYISPRSTFSTLQELVDHYKK 89
Score = 41.1 bits (96), Expect = 8e-05
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 3 SRRWFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVR-----LNGEVTHIKI 56
+ WF IS +AE LL G GSF++R S + G ++LSVR V H KI
Sbjct: 2 TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHYKI 61
Query: 57 QNTGDCYDLYGGEK--FATLSELVQFY 81
+ T D Y + F+TL ELV Y
Sbjct: 62 R-TLDNGGFYISPRSTFSTLQELVDHY 87
>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2
domain containing protein 2A and 7 (SH2D2A and SH2D7).
SH2D2A and SH7 both contain a single SH2 domain. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 77
Score = 45.2 bits (107), Expect = 2e-06
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 27/102 (26%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDF 170
WFHG ++ +EAE+L L+ G +LVR S+S F
Sbjct: 1 AWFHGFITRREAERL------------------------LEPKPQGCYLVRFSESAVT-F 35
Query: 171 VLSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDS-LTQLIEHY 210
VLS R+ H ++ + + ++ V G + + L L+ HY
Sbjct: 36 VLSYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHY 77
Score = 41.0 bits (96), Expect = 6e-05
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 5 RWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYD 64
WFH I+ EAE LL + G +LVR S S F LS R H + D
Sbjct: 1 AWFHGFITRREAERLLEPKPQ-GCYLVRFSESAVT-FVLSYRSRTCCRHFLLAQLRDGRH 58
Query: 65 LYGGEK--FATLSELVQFY 81
+ GE A L +L+ Y
Sbjct: 59 VVLGEDSAHARLQDLLLHY 77
>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B
adapter proteins (SH2B1, SH2B2, SH2B3). SH2B1 (SH2-B,
PSM), like other members of the SH2B adapter protein
family, contains a pleckstrin homology domain, at least
one dimerization domain, and a C-terminal SH2 domain
which binds to phosphorylated tyrosines in a variety of
tyrosine kinases. SH2B1 and SH2B2 function in
signaling pathways found downstream of growth hormone
receptor and receptor tyrosine kinases, including the
insulin, insulin-like growth factor-I (IGF-I),
platelet-derived growth factor (PDGF), nerve growth
factor, hepatocyte growth factor, and fibroblast growth
factor receptors. SH2B2beta, a new isoform of SH2B2, is
an endogenous inhibitor of SH2B1 and/or SH2B2
(SH2B2alpha), negatively regulating insulin signaling
and/or JAK2-mediated cellular responses. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 97
Score = 45.8 bits (108), Expect = 2e-06
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 21/109 (19%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG LS +A QL+L+ G G +G FLVR+S+++ G++V
Sbjct: 10 WFHGMLSRLKAAQLVLEGGT---------------------GSHGVFLVRQSETRRGEYV 48
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSG 220
L+ K H+ + E F S+ ++EH++ +P+ SG
Sbjct: 49 LTFNFQGKAKHLRLSLNEEGQCRVQHLWFQSIFDMLEHFRVHPIPLESG 97
Score = 40.0 bits (93), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYD--GSFLVRPSRSNPGDFTLSVRLNGEVTHIK--I 56
+S WFH +S ++A L+LE G G FLVR S + G++ L+ G+ H++ +
Sbjct: 5 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHLRLSL 64
Query: 57 QNTGDC 62
G C
Sbjct: 65 NEEGQC 70
>gnl|CDD|198252 cd10389, SH2_SHB, Src homology 2 domain found in SH2
domain-containing adapter protein B (SHB). SHB
functions in generating signaling compounds in response
to tyrosine kinase activation. SHB contains proline-rich
motifs, a phosphotyrosine binding (PTB) domain, tyrosine
phosphorylation sites, and a SH2 domain. SHB mediates
certain aspects of platelet-derived growth factor (PDGF)
receptor-, fibroblast growth factor (FGF) receptor-,
neural growth factor (NGF) receptor TRKA-, T cell
receptor-, interleukin-2 (IL-2) receptor- and focal
adhesion kinase- (FAK) signaling. SRC-like FYN-Related
Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB
regulate apoptosis, proliferation and differentiation.
SHB promotes apoptosis and is also required for proper
mitogenicity, spreading and tubular morphogenesis in
endothelial cells. SHB also plays a role in preventing
early cavitation of embryoid bodies and reduces
differentiation to cells expressing albumin, amylase,
insulin and glucagon. SHB is a multifunctional protein
that has difference responses in different cells under
various conditions. In general SH2 domains are involved
in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 97
Score = 45.9 bits (108), Expect = 2e-06
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+H +IS +AE LL + S+LVR S+++ D++LS++ N H+K+ T + Y L
Sbjct: 3 WYHGAISRGDAENLL-RLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTKEKYVL 61
Query: 66 -YGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
F ++ E++ +Y +L + E + L YP+
Sbjct: 62 GQNSPPFDSVPEVIHYYTTR--KLPIKGAEHLSLLYPV 97
Score = 40.8 bits (95), Expect = 1e-04
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 25/100 (25%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG +S +AE L L+ K S+LVR SQ+ D+
Sbjct: 3 WYHGAISRGDAENL------------------------LRLCKECSYLVRNSQTSKHDYS 38
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVG-GGEQFDSLTQLIEHY 210
LS++++ H+ + EKY +G FDS+ ++I +Y
Sbjct: 39 LSLKSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYY 78
>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain
found in Fyn isoform b like proteins. Fyn is a member
of the Src non-receptor type tyrosine kinase family of
proteins. This cd contains the SH2 domain found in Fyn
isoform b type proteins. Fyn is involved in the control
of cell growth and is required in the following
pathways: T and B cell receptor signaling,
integrin-mediated signaling, growth factor and cytokine
receptor signaling, platelet activation, ion channel
function, cell adhesion, axon guidance, fertilization,
entry into mitosis, and differentiation of natural
killer cells, oligodendrocytes and keratinocytes. The
protein associates with the p85 subunit of
phosphatidylinositol 3-kinase and interacts with the
Fyn-binding protein. Alternatively spliced transcript
variants encoding distinct isoforms exist. Fyn is
primarily localized to the cytoplasmic leaflet of the
plasma membrane. Tyrosine phosphorylation of target
proteins by Fyn serves to either regulate target protein
activity, and/or to generate a binding site on the
target protein that recruits other signaling molecules.
FYN has been shown to interact with a number of proteins
including: BCAR1, Cbl, Janus kinase, nephrin, Sky,
tyrosine kinase, Wiskott-Aldrich syndrome protein, and
Zap-70. Fyn has a unique N-terminal domain, an SH3
domain, an SH2 domain, a kinase domain and a regulatory
tail, as do the other members of the family. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 45.8 bits (108), Expect = 2e-06
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 36/111 (32%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E W+ G+L K+AE+ +L G G+FL+RES++ G
Sbjct: 3 EEWYFGKLGRKDAERQLLSFGN----------------------PRGTFLIRESETTKGA 40
Query: 170 FVLSVR-----TDDKVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHY 210
+ LS+R D V H IR K D GG QF++L QL++HY
Sbjct: 41 YSLSIRDWDDMKGDHVKHYKIR----KLDNGGYYITTRAQFETLQQLVQHY 87
Score = 40.0 bits (93), Expect = 2e-04
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 2 SSRRWFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVR----LNGE-VTHIK 55
+ W+ + +AE LL G G+FL+R S + G ++LS+R + G+ V H K
Sbjct: 1 QAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYK 60
Query: 56 IQNTGD-CYDLYGGEKFATLSELVQFYME 83
I+ + Y + +F TL +LVQ Y E
Sbjct: 61 IRKLDNGGYYITTRAQFETLQQLVQHYSE 89
>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine
kinase sarcoma (Src). Src is a member of the Src
non-receptor type tyrosine kinase family of proteins.
Src is thought to play a role in the regulation of
embryonic development and cell growth. Members here
include v-Src and c-Src. v-Src lacks the C-terminal
inhibitory phosphorylation site and is therefore
constitutively active as opposed to normal cellular src
(c-Src) which is only activated under certain
circumstances where it is required (e.g. growth factor
signaling). v-Src is an oncogene whereas c-Src is a
proto-oncogene. c-Src consists of three domains, an
N-terminal SH3 domain, a central SH2 domain and a
tyrosine kinase domain. The SH2 and SH3 domains work
together in the auto-inhibition of the kinase domain.
The phosphorylation of an inhibitory tyrosine near the
c-terminus of the protein produces a binding site for
the SH2 domain which then facilitates binding of the SH3
domain to a polyproline site within the linker between
the SH2 domain and the kinase domain. Binding of the SH3
domain inactivates the enzyme. This allows for multiple
mechanisms for c-Src activation: dephosphorylation of
the C-terminal tyrosine by a protein tyrosine
phosphatase, binding of the SH2 domain by a competitive
phospho-tyrosine residue, or competitive binding of a
polyproline binding site to the SH3 domain. Unlike most
other Src members Src lacks cysteine residues in the SH4
domain that undergo palmitylation. Serine and threonine
phosphorylation sites have also been identified in the
unique domains of Src and are believed to modulate
protein-protein interactions or regulate catalytic
activity. Alternatively spliced forms of Src, which
contain 6- or 11-amino acid insertions in the SH3
domain, are expressed in CNS neurons. c-Src has a unique
N-terminal domain, an SH3 domain, an SH2 domain, a
kinase domain and a regulatory tail, as do the other
members of the family. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 45.8 bits (108), Expect = 2e-06
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 36/114 (31%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGD 169
E W+ G+++ +E+E+L+L + G+FLVRES++ G
Sbjct: 3 EEWYFGKITRRESERLLLN----------------------AENPRGTFLVRESETTKGA 40
Query: 170 FVLSVRTDD-----KVTHVMIRCQAEKYDVGG-----GEQFDSLTQLIEHYKRN 213
+ LSV D V H IR K D GG QF+SL QL+ +Y ++
Sbjct: 41 YCLSVSDFDNAKGLNVKHYKIR----KLDSGGFYITSRTQFNSLQQLVAYYSKH 90
Score = 34.3 bits (78), Expect = 0.022
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 3 SRRWFHPSISGVEAEVLLLE-RGYDGSFLVRPSRSNPGDFTLSVR-------LNGEVTHI 54
+ W+ I+ E+E LLL G+FLVR S + G + LSV LN V H
Sbjct: 2 AEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLN--VKHY 59
Query: 55 KIQ--NTGDCYDLYGGEKFATLSELVQFYMENQGQLKKRNQEV 95
KI+ ++G Y + +F +L +LV +Y ++ L R V
Sbjct: 60 KIRKLDSGGFY-ITSRTQFNSLQQLVAYYSKHADGLCHRLTTV 101
>gnl|CDD|198253 cd10390, SH2_SHD, Src homology 2 domain found in SH2
domain-containing adapter proteins D (SHD). The
expression of SHD is restricted to the brain. SHD may be
a physiological substrate of c-Abl and may function as
an adapter protein in the central nervous system. It is
also thought to be involved in apoptotic regulation. SHD
contains five YXXP motifs, a substrate sequence
preferred by Abl tyrosine kinases, in addition to a
poly-proline rich region and a C-terminal SH2 domain. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 98
Score = 45.5 bits (107), Expect = 3e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
WFH +S +AE LL +GS+LVR S + P D +LS+R + H+K T + +
Sbjct: 3 WFHGPLSRADAENLL-SLCKEGSYLVRLSETRPQDCSLSLRSSQGFLHLKFARTRENQVV 61
Query: 66 YGGEK--FATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
G F ++ ELV Y + L + E + L YP+
Sbjct: 62 LGQHSGPFPSVPELVLHY--SSRPLPVQGAEHLALLYPV 98
Score = 44.7 bits (105), Expect = 4e-06
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 26/106 (24%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG LS +AE L L K GS+LVR S+++P D
Sbjct: 3 WFHGPLSRADAENL------------------------LSLCKEGSYLVRLSETRPQDCS 38
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVGGGEQ--FDSLTQLIEHYKRNPM 215
LS+R+ H+ E V G F S+ +L+ HY P+
Sbjct: 39 LSLRSSQGFLHLKFARTRENQVVLGQHSGPFPSVPELVLHYSSRPL 84
>gnl|CDD|198245 cd10382, SH2_SOCS1, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) proteins. SH2
domain found in SOCS proteins. SOCS was first recognized
as a group of cytokine-inducible SH2 (CIS) domain
proteins comprising eight family members in human (CIS
and SOCS1-SOCS7). In addition to the SH2 domain, SOCS
proteins have a variable N-terminal domain and a
conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation. Loss
of SOCS activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. Members
(SOCS4-SOCS7) were identified by their conserved SOCS
box, an adapter motif of 3 helices that associates
substrate binding domains, such as the SOCS SH2 domain,
ankryin, and WD40 with ubiquitin ligase components.
These show limited cytokine induction. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 98
Score = 45.4 bits (108), Expect = 3e-06
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 150 LQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQ-FDSLTQLIE 208
L++ G+FL+R+S+ K F LSV+ + I +A K+ + G ++ FD L +L+E
Sbjct: 26 LKREPVGTFLIRDSRQKNCFFALSVKMASGPVSIRILFKAGKFSLDGSKESFDCLFKLLE 85
Query: 209 HYKRNP 214
HY +P
Sbjct: 86 HYVASP 91
Score = 38.9 bits (91), Expect = 5e-04
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 13 GVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYG-GEKF 71
VE L+R G+FL+R SR F LSV++ I+I + L G E F
Sbjct: 18 SVEEAHAKLKREPVGTFLIRDSRQKNCFFALSVKMASGPVSIRILFKAGKFSLDGSKESF 77
Query: 72 ATLSELVQFYME 83
L +L++ Y+
Sbjct: 78 DCLFKLLEHYVA 89
>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2
domain-bearing protein kinases D and E (ShkD and ShkE).
SH2-bearing genes cloned from Dictyostelium include
two transcription factors, STATa and STATc, and a
signaling factor, SHK1 (shkA). A database search of the
Dictyostelium discoideum genome revealed two additional
putative STAT sequences, dd-STATb and dd-STATd, and
four additional putative SHK genes, dd-SHK2 (shkB),
dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE).
This model contains members of shkD and shkE. All of
the SHK members are most closely related to the protein
kinases found in plants. However these kinases in
plants are not conjugated to any SH2 or SH2-like
sequences. Alignment data indicates that the SHK SH2
domains carry some features of the STAT SH2 domains in
Dictyostelium. When STATc's linker domain was used for
a BLAST search, the sequence between the protein kinase
domain and the SH2 domain (the linker) of SHK was
recovered, suggesting a close relationship among these
molecules within this region. SHK's linker domain is
predicted to contain an alpha-helix which is indeed
homologous to that of STAT. Based on the phylogenetic
alignment, SH2 domains can be grouped into two
categories, STAT-type and Src-type. SHK family members
are in between, but are closer to the STAT-type which
indicates a close relationship between SHK and STAT
families in their SH2 domains and further supports the
notion that SHKs linker-SH2 domain evolved from STAT or
STATL (STAT-like Linker-SH2) domain found in plants. In
SHK, STAT, and SPT6, the linker-SH2 domains all reside
exclusively in the C-terminal regions. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 87
Score = 44.8 bits (106), Expect = 3e-06
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGD--FTLSVRLNGEVTHIKIQ 57
+ ++ WFH IS EAE L R +G+FL+R S ++P FT+S + + H +I
Sbjct: 7 LLAKSWFHGDISRDEAEKRLRGRP-EGTFLIRLSSTDPKKTPFTISKKKKSKPVHKRIS 64
Score = 27.5 bits (61), Expect = 4.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 111 RWFHGQLSGKEAEQLILQKGKNGSFLVRES 140
WFHG +S EAE+ L+ G+FL+R S
Sbjct: 11 SWFHGDISRDEAEKR-LRGRPEGTFLIRLS 39
>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec
protein, Bmx. A member of the Tec protein tyrosine
kinase Bmx is expressed in the endothelium of large
arteries, fetal endocardium, adult endocardium of the
left ventricle, bone marrow, lung, testis, granulocytes,
myeloid cell lines, and prostate cell lines. Bmx is
involved in the regulation of Rho and serum response
factor (SRF). Bmx has been shown to interact with PAK1,
PTK2, PTPN21, and RUFY1. Most of the Tec family members
have a PH domain (Txk and the short (type 1) splice
variant of Drosophila Btk29A are exceptions), a Tec
homology (TH) domain, a SH3 domain, a SH2 domain, and a
protein kinase catalytic domain. The TH domain consists
of a Zn2+-binding Btk motif and a proline-rich region.
The Btk motif is found in Tec kinases, Ras GAP, and
IGBP. It is crucial for the function of Tec PH domains.
It is not present in Txk and the type 1 splice form of
the Drosophila homolog. The proline-rich regions are
highly conserved for the most part with the exception of
Bmx whose residues surrounding the PXXP motif are not
conserved (TH-like) and Btk29A which is entirely unique
with large numbers of glycine residues (TH-extended).
Tec family members all lack a C-terminal tyrosine having
an autoinhibitory function in its phosphorylated state.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 106
Score = 45.3 bits (107), Expect = 3e-06
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 25/121 (20%)
Query: 110 ERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGK-NGSFLVRESQSKPG 168
WF G +S ++EQL+ QKGK G+F+VR S Q G S + K G
Sbjct: 6 YDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS---------QVGMYTVSLFSKAVNDKKG 56
Query: 169 DFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQ 227
V H + AE K + FDS+ +LI +++ N ++G + L+
Sbjct: 57 ----------TVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHN----SAGMITRLRH 102
Query: 228 P 228
P
Sbjct: 103 P 103
Score = 37.2 bits (86), Expect = 0.003
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSV------RLNGEVTHIKIQ-N 58
WF +IS ++E LL ++G +G+F+VR S S G +T+S+ G V H + N
Sbjct: 8 WFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTN 66
Query: 59 TGDCYDLYGGEKFATLSELVQFYMENQGQLKKRNQEVI 96
+ L F ++ +L+ ++ N + R + +
Sbjct: 67 AENKLYLAENYCFDSIPKLIHYHQHNSAGMITRLRHPV 104
>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain
found in Zeta-chain-associated protein kinase 70
(ZAP-70). ZAP-70 and Syk comprise a family of
hematopoietic cell specific protein tyrosine kinases
(PTKs) that are required for antigen and antibody
receptor function. ZAP-70 is expressed in T and natural
killer (NK) cells and Syk is expressed in B cells,
mast cells, polymorphonuclear leukocytes, platelets,
macrophages, and immature T cells. They are required
for the proper development of T and B cells, immune
receptors, and activating NK cells. They consist of two
N-terminal Src homology 2 (SH2) domains and a
C-terminal kinase domain separated from the SH2 domains
by a linker or hinge region. Phosphorylation of both
tyrosine residues within the Immunoreceptor
Tyrosine-based Activation Motifs (ITAM; consensus
sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs
is required for efficient interaction of ZAP-70 and Syk
with the receptor subunits and for receptor function.
ZAP-70 forms two phosphotyrosine binding pockets, one
of which is shared by both SH2 domains. In Syk the two
SH2 domains do not form such a phosphotyrosine-binding
site. The SH2 domains here are believed to function
independently. In addition, the two SH2 domains of Syk
display flexibility in their relative orientation,
allowing Syk to accommodate a greater variety of
spacing sequences between the ITAM phosphotyrosines and
singly phosphorylated non-classical ITAM ligands. This
model contains the C-terminus SH2 domains of Zap70. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 105
Score = 44.9 bits (106), Expect = 4e-06
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 WFHPSISGVEAEVLLLERGY-DGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI-QNTGDCY 63
W+H SI+ EAE L DG FL+R + + G + LS+ V H +I Q+ Y
Sbjct: 12 WYHGSIARDEAERRLYSGAQPDGKFLLRERKES-GTYALSLVYGKTVYHYRIDQDKSGKY 70
Query: 64 DLYGGEKFATLSELVQF 80
+ G KF TL +LV++
Sbjct: 71 SIPEGTKFDTLWQLVEY 87
Score = 44.5 bits (105), Expect = 6e-06
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 28/118 (23%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG ++ EAE+ +L +G FL+RE + G +
Sbjct: 12 WYHGSIARDEAER----------------------RLYSGAQPDGKFLLRERKES-GTYA 48
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 228
LS+ V H I + ++ KY + G +FD+L QL+E+ K P G + L++
Sbjct: 49 LSLVYGKTVYHYRIDQDKSGKYSIPEGTKFDTLWQLVEYLKLKP----DGLIFVLRES 102
>gnl|CDD|198255 cd10392, SH2_SHF, Src homology 2 domain found in SH2
domain-containing adapter protein F (SHF). SHF is
thought to play a role in PDGF-receptor signaling and
regulation of apoptosis. SHF is mainly expressed in
skeletal muscle, brain, liver, prostate, testis, ovary,
small intestine, and colon. SHF contains four putative
tyrosine phosphorylation sites and an SH2 domain. In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 98
Score = 44.7 bits (105), Expect = 4e-06
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+H +IS +AE LL + S+LVR S ++ DF+LS++ + H+K+ T + +
Sbjct: 3 WYHGAISRTDAENLL-RLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYV 61
Query: 66 YGGEK--FATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
G F+++ E++ Y +L + E + L YP+
Sbjct: 62 LGQNSPPFSSVPEIIHHYASR--KLPIKGAEHMSLLYPV 98
Score = 42.0 bits (98), Expect = 4e-05
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 26/101 (25%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG +S +AE L L+ K S+LVR S++ DF
Sbjct: 3 WYHGAISRTDAENL------------------------LRLCKEASYLVRNSETSKNDFS 38
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVG-GGEQFDSLTQLIEHY 210
LS+++ H+ + R + KY +G F S+ ++I HY
Sbjct: 39 LSLKSSQGFMHMKLSRTKEHKYVLGQNSPPFSSVPEIIHHY 79
>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec
protein, Txk. A member of the Tec protein tyrosine
kinase Txk is expressed in thymus, spleen, lymph node, T
lymphocytes, NK cells, mast cell lines, and myeloid cell
line. Txk plays a role in TCR signal transduction, T
cell development, and selection which is analogous to
the function of Itk. Txk has been shown to interact with
IFN-gamma. Unlike most of the Tec family members Txk
lacks a PH domain. Instead Txk has a unique region
containing a palmitoylated cysteine string which has a
similar membrane tethering function as the PH domain.
Txk also has a zinc-binding motif, a SH3 domain, a SH2
domain, and a protein kinase catalytic domain. The TH
domain consists of a Zn2+-binding Btk motif and a
proline-rich region. The Btk motif is found in Tec
kinases, Ras GAP, and IGBP and crucial to the function
of the PH domain. It is not present in Txk which is not
surprising since it lacks a PH domain. The type 1 splice
form of the Drosophila homolog also lacks both the PH
domain and the Btk motif. The proline-rich regions are
highly conserved for the most part with the exception of
Bmx whose residues surrounding the PXXP motif are not
conserved (TH-like) and Btk29A which is entirely unique
with large numbers of glycine residues (TH-extended).
Tec family members all lack a C-terminal tyrosine having
an autoinhibitory function in its phosphorylated state.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 106
Score = 44.6 bits (105), Expect = 5e-06
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSV------RLNGEVTHIKIQNT 59
W+H +I+ +AE LL + +G+F+VR SR + G +T+SV + H +I+
Sbjct: 8 WYHKNITRNQAERLLRQESKEGAFIVRDSR-HLGSYTISVFTRARRSTEASIKHYQIKKN 66
Query: 60 GDCYDLYGGEK--FATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
D Y E+ F ++ EL+Q++ N L R L+YP+
Sbjct: 67 -DSGQWYVAERHLFQSIPELIQYHQHNAAGLMSR------LRYPV 104
Score = 34.5 bits (79), Expect = 0.019
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 35/127 (27%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
W+H ++ +AE+L+ Q+ K G+F+VR+S G
Sbjct: 5 IYEWYHKNITRNQAERLLRQESKEGAFIVRDS------------------------RHLG 40
Query: 169 DFVLSVRTDDK------VTHVMI-RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGT 221
+ +SV T + + H I + + ++ V F S+ +LI++++ N +G
Sbjct: 41 SYTISVFTRARRSTEASIKHYQIKKNDSGQWYVAERHLFQSIPELIQYHQHN----AAGL 96
Query: 222 VVHLKQP 228
+ L+ P
Sbjct: 97 MSRLRYP 103
>gnl|CDD|198275 cd10412, SH2_SH2B3, Src homology 2 (SH2) domain found in SH2B
adapter proteins (SH2B1, SH2B2, SH2B3). SH2B3 (Lnk),
like other members of the SH2B adapter protein family,
contains a pleckstrin homology domain, at least one
dimerization domain, and a C-terminal SH2 domain which
binds to phosphorylated tyrosines in a variety of
tyrosine kinases. SH2B3 negatively regulates
lymphopoiesis and early hematopoiesis. The
lnk-deficiency results in enhanced production of B
cells, and expansion as well as enhanced function of
hematopoietic stem cells (HSCs), demonstrating negative
regulatory functions of Sh2b3/Lnk in cytokine
signaling. Sh2b3/Lnk also functions in responses
controlled by cell adhesion and in crosstalk between
integrin- and cytokine-mediated signaling. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 97
Score = 43.3 bits (102), Expect = 1e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERGYD--GSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQN 58
+S WFH IS V+A L+ +G D G FLVR S + G++ L+ G H+++
Sbjct: 5 LSCYPWFHGPISRVKAAQLVQLQGPDAHGVFLVRQSETRRGEYVLTFNFQGRAKHLRLSL 64
Query: 59 T--GDC 62
T G C
Sbjct: 65 TERGQC 70
Score = 42.2 bits (99), Expect = 4e-05
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 33/115 (28%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG +S +A QL+ +G + +G FLVR+S+++ G++V
Sbjct: 10 WFHGPISRVKAAQLVQLQGPDA---------------------HGVFLVRQSETRRGEYV 48
Query: 172 LSVRTDDKVTHVMI------RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSG 220
L+ + H+ + +C+ + F S+ ++ H++R+P+ G
Sbjct: 49 LTFNFQGRAKHLRLSLTERGQCRVQHL------HFPSVVDMLHHFQRSPIPLECG 97
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 43.5 bits (103), Expect = 1e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 413 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIHAGN 451
+ HYH+ WPDHGVP P +L L V + +
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESS 39
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 43.5 bits (103), Expect = 1e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 413 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIHAGN 451
+ HYH+ WPDHGVP P +L L V + +
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESS 39
>gnl|CDD|198274 cd10411, SH2_SH2B2, Src homology 2 (SH2) domain found in SH2B
adapter proteins (SH2B1, SH2B2, SH2B3). SH2B2 (APS),
like other members of the SH2B adapter protein family,
contains a pleckstrin homology domain, at least one
dimerization domain, and a C-terminal SH2 domain which
binds to phosphorylated tyrosines in a variety of
tyrosine kinases. SH2B1 and SH2B2 function in
signaling pathways found downstream of growth hormone
receptor and receptor tyrosine kinases, including the
insulin, insulin-like growth factor-I (IGF-I),
platelet-derived growth factor (PDGF), nerve growth
factor, hepatocyte growth factor, and fibroblast growth
factor receptors. SH2B2beta, a new isoform of SH2B2, is
an endogenous inhibitor of SH2B1 and/or SH2B2
(SH2B2alpha), negatively regulating insulin signaling
and/or JAK2-mediated cellular responses. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 97
Score = 42.3 bits (99), Expect = 3e-05
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 1 MSSRRWFHPSISGVEAEVLLLERG--YDGSFLVRPSRSNPGDFTLSVRLNGEVTHIK--I 56
+S WFH ++S V+A L+L G G F++R S + PG++ L+ G+ H++ +
Sbjct: 5 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGEYVLTFNFQGKAKHLRLSL 64
Query: 57 QNTGDCY 63
G C+
Sbjct: 65 NGHGQCH 71
Score = 41.9 bits (98), Expect = 4e-05
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 33/115 (28%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG LS +A QL+L G +G F++R+S+++PG++V
Sbjct: 10 WFHGTLSRVKAAQLVLAGGPR---------------------SHGLFVIRQSETRPGEYV 48
Query: 172 LSVRTDDKVTHVMI------RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSG 220
L+ K H+ + +C + F S+ ++ H+ +P+ SG
Sbjct: 49 LTFNFQGKAKHLRLSLNGHGQCHVQHL------WFQSVFDMLRHFHTHPIPLESG 97
>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2
proteins. Proto-oncogene vav is a member of the Dbl
family of guanine nucleotide exchange factors (GEF) for
the Rho family of GTP binding proteins. All vavs are
activated by tyrosine phosphorylation leading to their
activation. There are three Vav mammalian family
members: Vav1 which is expressed in the hematopoietic
system, and Vav2 and Vav3 are more ubiquitously
expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may
activate Rac1 and Cdc42. Vav2 has been shown to interact
with CD19 and Grb2. Alternatively spliced transcript
variants encoding different isoforms have been found for
Vav2. Vav proteins are involved in several processes
that require cytoskeletal reorganization, such as the
formation of the immunological synapse (IS),
phagocytosis, platelet aggregation, spreading, and
transformation. Vavs function as guanine nucleotide
exchange factors (GEFs) for the Rho/Rac family of
GTPases. Vav family members have several conserved
motifs/domains including: a leucine-rich region, a
leucine-zipper, a calponin homology (CH) domain, an
acidic domain, a Dbl-homology (DH) domain, a pleckstrin
homology (PH) domain, a cysteine-rich domain, 2 SH3
domains, a proline-rich region, and a SH2 domain. Vavs
are the only known Rho GEFs that have both the DH/PH
motifs and SH2/SH3 domains in the same protein. The
leucine-rich helix-loop-helix (HLH) domain is thought to
be involved in protein heterodimerization with other HLH
proteins and it may function as a negative regulator by
forming inactive heterodimers. The CH domain is usually
involved in the association with filamentous actin, but
in Vav it controls NFAT stimulation, Ca2+ mobilization,
and its transforming activity. Acidic domains are
involved in protein-protein interactions and contain
regulatory tyrosines. The DH domain is a GDP-GTP
exchange factor on Rho/Rac GTPases. The PH domain in
involved in interactions with GTP-binding proteins,
lipids and/or phosphorylated serine/threonine residues.
The SH3 domain is involved in localization of proteins
to specific sites within the cell interacting with
protein with proline-rich sequences. The SH2 domain
mediates a high affinity interaction with tyrosine
phosphorylated proteins. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 42.4 bits (99), Expect = 3e-05
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
WF ++ + + LL + G++L+R + F +S++ N EV HIK+ + +
Sbjct: 7 WFAGNMERQQTDNLL-KSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHI 65
Query: 66 YGGEKFATLSELVQFYMENQGQLKKRNQEVIELKYPLS 103
+KF +L ELV++Y + + Q LKYP
Sbjct: 66 TEAKKFESLLELVEYY-QCHSLKESFKQLDTTLKYPYK 102
Score = 39.7 bits (92), Expect = 3e-04
Identities = 17/70 (24%), Positives = 44/70 (62%)
Query: 149 ILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIE 208
+L+ +G++L+RE ++ F +S++ +D+V H+ + + + ++F+SL +L+E
Sbjct: 20 LLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFESLLELVE 79
Query: 209 HYKRNPMVET 218
+Y+ + + E+
Sbjct: 80 YYQCHSLKES 89
>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) family. SH2
domain found in SOCS proteins. SOCS was first recognized
as a group of cytokine-inducible SH2 (CIS) domain
proteins comprising eight family members in human (CIS
and SOCS1-SOCS7). In addition to the SH2 domain, SOCS
proteins have a variable N-terminal domain and a
conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation. Loss
of SOCS activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. Members
(SOCS4-SOCS7) were identified by their conserved SOCS
box, an adapter motif of 3 helices that associates
substrate binding domains, such as the SOCS SH2 domain,
ankryin, and WD40 with ubiquitin ligase components.
These show limited cytokine induction. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 81
Score = 41.4 bits (98), Expect = 4e-05
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 28/104 (26%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+ G ++ EAE+L L G+FLVR+S +L F
Sbjct: 2 WYWGGITRYEAEEL-LAGKPEGTFLVRDSSDSR-------------YL----------FS 37
Query: 172 LSVRTDDKVTHVMIRCQAEKY----DVGGGEQFDSLTQLIEHYK 211
+S RT + H I ++ +F + +LIEHY
Sbjct: 38 VSFRTYGRTLHARIEYSNGRFSFDSSDPSVPRFPCVVELIEHYV 81
Score = 40.3 bits (95), Expect = 1e-04
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+ I+ EAE LL +G+FLVR S + F++S R G H +I+ + +
Sbjct: 2 WYWGGITRYEAEELL-AGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEYSNGRFSF 60
Query: 66 YG----GEKFATLSELVQFYM 82
+F + EL++ Y+
Sbjct: 61 DSSDPSVPRFPCVVELIEHYV 81
>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn.
Lyn is a member of the Src non-receptor type tyrosine
kinase family of proteins and is expressed in the
hematopoietic cells, in neural tissues, liver, and
adipose tissue. There are two alternatively spliced
forms of Lyn. Lyn plays an inhibitory role in myeloid
lineage proliferation. Following engagement of the B
cell receptors, Lyn undergoes rapid phosphorylation and
activation, triggering a cascade of signaling events
mediated by Lyn phosphorylation of tyrosine residues
within the immunoreceptor tyrosine-based activation
motifs (ITAM) of the receptor proteins, and subsequent
recruitment and activation of other kinases including
Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3
kinase. These kinases play critical roles in
proliferation, Ca2+ mobilization and cell
differentiation. Lyn plays an essential role in the
transmission of inhibitory signals through
phosphorylation of tyrosine residues within the
immunoreceptor tyrosine-based inhibitory motifs (ITIM)
in regulatory proteins such as CD22, PIR-B and FC RIIb1.
Their ITIM phosphorylation subsequently leads to
recruitment and activation of phosphatases such as
SHIP-1 and SHP-1 which further down modulate signaling
pathways, attenuate cell activation and can mediate
tolerance. Lyn also plays a role in the insulin
signaling pathway. Activated Lyn phosphorylates insulin
receptor substrate 1 (IRS1) leading to an increase in
translocation of Glut-4 to the cell membrane and
increased glucose utilization. It is the primary Src
family member involved in signaling downstream of the B
cell receptor. Lyn plays an unusual, 2-fold role in B
cell receptor signaling; it is essential for initiation
of signaling but is also later involved in negative
regulation of the signal. Lyn has a unique N-terminal
domain, an SH3 domain, an SH2 domain, a kinase domain
and a regulatory tail, as do the other members of the
family. In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 101
Score = 42.3 bits (99), Expect = 4e-05
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 28/110 (25%)
Query: 109 TERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPG 168
TE WF ++ K+AE+ QL+ G+FL+RES++ G
Sbjct: 2 TEEWFFKDITRKDAER----------------------QLLAPGNSAGAFLIRESETLKG 39
Query: 169 DFVLSVR-----TDDKVTHVMIRC-QAEKYDVGGGEQFDSLTQLIEHYKR 212
+ LSVR D + H IR Y + F ++ +I+HY++
Sbjct: 40 SYSLSVRDYDPQHGDVIKHYKIRSLDNGGYYISPRITFPCISDMIKHYQK 89
Score = 34.2 bits (78), Expect = 0.022
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 3 SRRWFHPSISGVEAEVLLLERGYD-GSFLVRPSRSNPGDFTLSVR----LNGEVT-HIKI 56
+ WF I+ +AE LL G G+FL+R S + G ++LSVR +G+V H KI
Sbjct: 2 TEEWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKI 61
Query: 57 QNTGDCYDLYGGEK--FATLSELVQFYMENQGQLKKR 91
+ + D Y + F +S++++ Y + L +R
Sbjct: 62 R-SLDNGGYYISPRITFPCISDMIKHYQKQSDGLCRR 97
>gnl|CDD|198199 cd09946, SH2_HSH2_like, Src homology 2 domain found in
hematopoietic SH2 (HSH2) protein. HSH2 is thought to
function as an adapter protein involved in tyrosine
kinase signaling. It may also be involved in regulating
cytokine signaling and cytoskeletal reorganization in
hematopoietic cells. HSH2 contains several putative
protein-binding motifs, SH3-binding proline-rich
regions, and phosphotyrosine sites, but lacks enzymatic
motifs. HSH2 was found to interact with
cytokine-regulated tyrosine kinase c-FES and an
activated Cdc42-associated tyrosine kinase ACK1. HSH2
binds c-FES through both its C-terminal region and its
N-terminal region including the SH2 domain and binds
ACK1 via its N-terminal proline-rich region. Both
kinases bound and tyrosine-phosphorylated HSH2 in
mammalian cells. In general SH2 domains are involved
in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 102
Score = 41.8 bits (98), Expect = 6e-05
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
WFH +IS AE +L + GSFL+R S S+ G +TLS + H ++ D +
Sbjct: 9 WFHGAISREAAENMLESQPL-GSFLIRVSHSHVG-YTLSYKAQSSCRHFMVKLLDDGTFM 66
Query: 66 YGGEK--FATLSELVQFY 81
GEK +L LV F+
Sbjct: 67 IPGEKVAHTSLHALVTFH 84
Score = 38.7 bits (90), Expect = 7e-04
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 27/106 (25%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG +S + AE ++ ESQ GSFL+R S S G +
Sbjct: 9 WFHGAISREAAENML------------ESQPL------------GSFLIRVSHSHVG-YT 43
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVGGGEQ--FDSLTQLIEHYKRNPM 215
LS + H M++ + + GE+ SL L+ +++ P+
Sbjct: 44 LSYKAQSSCRHFMVKLLDDGTFMIPGEKVAHTSLHALVTFHQQKPI 89
>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in
SLAM-associated protein (SAP) 1a. The X-linked
lymphoproliferative syndrome (XLP) gene encodes SAP
(also called SH2D1A/DSHP) a protein that consists of a
5 residue N-terminus, a single SH2 domain, and a short
25 residue C-terminal tail. XLP is characterized by an
extreme sensitivity to Epstein-Barr virus. Both T and
natural killer (NK) cell dysfunctions have been seen in
XLP patients. SAP binds the cytoplasmic tail of
Signaling lymphocytic activation molecule (SLAM), 2B4,
Ly-9, and CD84. SAP is believed to function as a
signaling inhibitor, by blocking or regulating binding
of other signaling proteins. SAP and the SAP-like
protein EAT-2 recognize the sequence motif TIpYXX[VI],
which is found in the cytoplasmic domains of a
restricted number of T, B, and NK cell surface
receptors and are proposed to be natural inhibitors or
regulators of the physiological role of a small family
of receptors on the surface of these cells. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 103
Score = 41.8 bits (98), Expect = 6e-05
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 7 FHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTG 60
+H IS E LLL G DGS+L+R S S PG + L V G V ++ T
Sbjct: 6 YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCVLYKGYVYTYRVSQTE 59
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 113 FHGQLSGKEAEQLILQKGKNGSFLVRESQS 142
+HG++S + E+L+L G +GS+L+R+S+S
Sbjct: 6 YHGKISRETGEKLLLAAGLDGSYLLRDSES 35
Score = 36.4 bits (84), Expect = 0.005
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 143 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSV 174
+ E+L+L G +GS+L+R+S+S PG + L V
Sbjct: 13 ETGEKLLLAAGLDGSYLLRDSESVPGVYCLCV 44
>gnl|CDD|198247 cd10384, SH2_SOCS3, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) proteins. SH2
domain found in SOCS proteins. SOCS was first recognized
as a group of cytokine-inducible SH2 (CIS) domain
proteins comprising eight family members in human (CIS
and SOCS1-SOCS7). In addition to the SH2 domain, SOCS
proteins have a variable N-terminal domain and a
conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation. Loss
of SOCS activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. Members
(SOCS4-SOCS7) were identified by their conserved SOCS
box, an adapter motif of 3 helices that associates
substrate binding domains, such as the SOCS SH2 domain,
ankryin, and WD40 with ubiquitin ligase components.
These show limited cytokine induction. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 40.9 bits (96), Expect = 1e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 143 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKY---DVGGGEQ 199
KEA L L G+FL+R+S + F LSV+T+ ++ I+C+ + Q
Sbjct: 20 KEANLL-LSAEPAGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEGGSFSLQTDPRSTQ 78
Query: 200 ----FDSLTQLIEHYKRNP 214
FD + +L+ HY
Sbjct: 79 PVPRFDCVLKLVHHYMPPS 97
Score = 39.0 bits (91), Expect = 5e-04
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 10 SISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGE 69
++SG EA +LL G+FL+R S FTLSV+ +++IQ G + L
Sbjct: 16 TVSGKEANLLLSAEP-AGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEGGSFSLQTDP 74
Query: 70 K-------FATLSELVQFYM 82
+ F + +LV YM
Sbjct: 75 RSTQPVPRFDCVLKLVHHYM 94
>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2
domain-containing adapter protein E (SHE). SHE is
expressed in heart, lung, brain, and skeletal muscle.
SHE contains two pTry protein binding domains, protein
interaction domain (PID) and a SH2 domain, followed by a
glycine-proline rich region, all of which are N-terminal
to the phosphotyrosine binding (PTB) domain. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 98
Score = 40.3 bits (94), Expect = 2e-04
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDC-YD 64
W+H SIS EAE L + + S+LVR S S ++++++ + HI + T D Y
Sbjct: 3 WYHGSISRAEAESRL-QPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYT 61
Query: 65 LYGGEK-FATLSELVQFYMENQGQLKKRNQEVIELKYPL 102
L F ++ E+V +Y + +L + E + L +P+
Sbjct: 62 LNQTSAVFDSIPEVVHYY--SNEKLPFKGAEHMTLLHPV 98
Score = 34.5 bits (79), Expect = 0.020
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 26/101 (25%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+HG +S EAE LQ K S+LVR S+S +
Sbjct: 3 WYHGSISRAEAESR------------------------LQPCKEASYLVRNSESGNSKYS 38
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVGGGEQ-FDSLTQLIEHY 210
++++T H+++ + + KY + FDS+ +++ +Y
Sbjct: 39 IALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYY 79
>gnl|CDD|198246 cd10383, SH2_SOCS2, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) proteins. SH2
domain found in SOCS proteins. SOCS was first recognized
as a group of cytokine-inducible SH2 (CIS) domain
proteins comprising eight family members in human (CIS
and SOCS1-SOCS7). In addition to the SH2 domain, SOCS
proteins have a variable N-terminal domain and a
conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation. Loss
of SOCS activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. Members
(SOCS4-SOCS7) were identified by their conserved SOCS
box, an adapter motif of 3 helices that associates
substrate binding domains, such as the SOCS SH2 domain,
ankryin, and WD40 with ubiquitin ligase components.
These show limited cytokine induction. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 103
Score = 39.9 bits (93), Expect = 3e-04
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 106 DPTTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQS 165
+ + W+ G ++ EA++ LQ G+FLVR+S + I K G +R +
Sbjct: 3 ELSQTGWYWGSMTVNEAKE-KLQDAPEGTFLVRDSSHSDYLLTISVKTSAGPTNLR-IEY 60
Query: 166 KPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHY 210
+ G F L D + V + + QFDS+ LIE+Y
Sbjct: 61 QDGKFRL-----DSIICVKSKLK----------QFDSVVHLIEYY 90
>gnl|CDD|198205 cd10342, SH2_SAP1, Src homology 2 (SH2) domain found in
SLAM-associated protein (SAP)1. The X-linked
lymphoproliferative syndrome (XLP) gene encodes SAP
(also called SH2D1A/DSHP) a protein that consists of a
5 residue N-terminus, a single SH2 domain, and a short
25 residue C-terminal tail. XLP is characterized by an
extreme sensitivity to Epstein-Barr virus. Both T and
natural killer (NK) cell dysfunctions have been seen in
XLP patients. SAP binds the cytoplasmic tail of
Signaling lymphocytic activation molecule (SLAM), 2B4,
Ly-9, and CD84. SAP is believed to function as a
signaling inhibitor, by blocking or regulating binding
of other signaling proteins. SAP and the SAP-like
protein EAT-2 recognize the sequence motif TIpYXX[VI],
which is found in the cytoplasmic domains of a
restricted number of T, B, and NK cell surface
receptors and are proposed to be natural inhibitors or
regulators of the physiological role of a small family
of receptors on the surface of these cells. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 103
Score = 39.2 bits (91), Expect = 4e-04
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI 56
+H IS E LLL G DGS+L+R S S PG + L V +G + ++
Sbjct: 5 VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRV 55
Score = 38.9 bits (90), Expect = 6e-04
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
+HG++S + E+L+L G +GS+L+R+S+S + + R SQ++ G +
Sbjct: 5 VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW- 63
Query: 172 LSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 228
S T V F + LI +++ G V+ L+ P
Sbjct: 64 -SAETAPGVHKRY---------------FRKIKNLISAFQK----PDQGIVIPLQYP 100
>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in
Tensin-like proteins. SH2 domain found in Tensin-like
proteins. The Tensins are a family of intracellular
proteins that interact with receptor tyrosine kinases
(RTKs), integrins, and actin. They are thought act as
signaling bridges between the extracellular space and
the cytoskeleton. There are four homologues: Tensin1,
Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten),
all of which contain a C-terminal tandem SH2-PTB domain
pairing, as well as actin-binding regions that may
localize them to focal adhesions. The isoforms of
Tensin2 and Tensin3 contain N-terminal C1 domains,
which are atypical and not expected to bind to phorbol
esters. Tensins 1-3 contain a phosphatase (PTPase) and
C2 domain pairing which resembles PTEN (phosphatase and
tensin homologue deleted on chromosome 10) protein.
PTEN is a lipid phosphatase that dephosphorylates
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3) to yield phosphatidylinositol
4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is
the product of phosphatidylinositol 3-kinase (PI3K)
activity, PTEN is therefore a key negative regulator of
the PI3K pathway. Because of their PTEN-like domains,
the Tensins may also possess phosphoinositide-binding
or phosphatase capabilities. However, only Tensin2 and
Tensin3 have the potential to be phosphatases since
only their PTPase domains contain a cysteine residue
that is essential for catalytic activity. In general
SH2 domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 116
Score = 39.3 bits (92), Expect = 5e-04
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVR 46
+S+ W+ P+IS +A + LL+ G+FLVR S + G + L+V+
Sbjct: 1 TSKYWYKPNISRDQA-IALLKDKPPGTFLVRDSTTYKGAYGLAVK 44
Score = 36.6 bits (85), Expect = 0.004
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 142 SKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD 201
S++ +L+ G+FLVR+S + G + L+V+ V + D
Sbjct: 11 SRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVKVATPPPGVNPF----------EAKGD 60
Query: 202 SLTQLIEHYKRNPMVETSGTVVHLK 226
++L+ H+ ++E S V LK
Sbjct: 61 PESELVRHF----LIEPSPKGVKLK 81
Score = 30.1 bits (68), Expect = 0.76
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 31/116 (26%)
Query: 108 TTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKP 167
T++ W+ +S +A L L+ G+FLVR+S + KG G V+ + P
Sbjct: 1 TSKYWYKPNISRDQAIAL-LKDKPPGTFLVRDSTT--------YKGAYG-LAVKVATPPP 50
Query: 168 GDFVLSVRTDDK---VTHVMIR----------CQAEKYDVGGGEQFDSLTQLI-EH 209
G + D + V H +I C E F SL+ L+ +H
Sbjct: 51 GVNPFEAKGDPESELVRHFLIEPSPKGVKLKGCPNEPV-------FGSLSALVYQH 99
>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in
cytokine-inducible SH2-containing protein (CIS). CIS
family members are known to be cytokine-inducible
negative regulators of cytokine signaling. The
expression of the CIS gene can be induced by IL2, IL3,
GM-CSF and EPO in hematopoietic cells.
Proteasome-mediated degradation of this protein has
been shown to be involved in the inactivation of the
erythropoietin receptor. Suppressor of cytokine
signalling (SOCS) was first recognized as a group of
cytokine-inducible SH2 (CIS) domain proteins comprising
eight family members in human (CIS and SOCS1-SOCS7).
In addition to the SH2 domain, SOCS proteins have a
variable N-terminal domain and a conserved SOCS box in
the C-terminal domain. SOCS proteins bind to a
substrate via their SH2 domain. The prototypical
members, CIS and SOCS1-SOCS3, have been shown to
regulate growth hormone signaling in vitro and in a
classic negative feedback response compete for binding
at phosphotyrosine sites in JAK kinase and receptor
pathways to displace effector proteins and target bound
receptors for proteasomal degradation. Loss of SOCS
activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 88
Score = 38.2 bits (89), Expect = 7e-04
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+ SI+ EA L + +G+FLVR S TLSV+ T+++I+ + + L
Sbjct: 6 WYWGSITASEAHQALQKAP-EGTFLVRDSSHPSYMLTLSVKTTRGPTNVRIEYSDGSFRL 64
Query: 66 YGG-------EKFATLSELVQFYM 82
F + LVQ Y+
Sbjct: 65 DSSSLARPRLLSFPDVVSLVQHYV 88
Score = 31.3 bits (71), Expect = 0.20
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 140 SQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI 185
S++ +A LQK G+FLVR+S LSV+T T+V I
Sbjct: 14 SEAHQA----LQKAPEGTFLVRDSSHPSYMLTLSVKTTRGPTNVRI 55
Score = 29.7 bits (67), Expect = 0.74
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRES 140
W+ G ++ EA Q LQK G+FLVR+S
Sbjct: 6 WYWGSITASEAHQ-ALQKAPEGTFLVRDS 33
>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in
protein-tyrosine kinase-6 (PTK6) which is also known as
breast tumor kinase (Brk). Human protein-tyrosine
kinase-6 (PTK6, also known as breast tumor kinase (Brk))
is a member of the non-receptor protein-tyrosine kinase
family and is expressed in two-thirds of all breast
tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2
domain, and catalytic domains. For the case of the
non-receptor protein-tyrosine kinases, the SH2 domain is
typically involved in negative regulation of kinase
activity by binding to a phosphorylated tyrosine residue
near to the C terminus. The C-terminal sequence of PTK6
(PTSpYENPT where pY is phosphotyrosine) is thought to be
a self-ligand for the SH2 domain. The structure of the
SH2 domain resembles other SH2 domains except for a
centrally located four-stranded antiparallel beta-sheet
(strands betaA, betaB, betaC, and betaD). There are also
differences in the loop length which might be
responsible for PTK6 ligand specificity. There are two
possible means of regulation of PTK6: autoinhibitory
with the phosphorylation of Tyr playing a role in its
negative regulation and autophosphorylation at this
site, though it has been shown that PTK6 might
phosphorylate signal transduction-associated proteins
Sam68 and signal transducing adaptor family member 2
(STAP/BKS) in vivo. In general SH2 domains are involved
in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 100
Score = 38.2 bits (88), Expect = 0.001
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 140 SQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGE 198
S+S+ +L + G+FL+R S+ D+VLSVR V H I +A + +
Sbjct: 10 SRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAV 69
Query: 199 QFDSLTQLIEHYKRNPM 215
F SL +L+ +++ +
Sbjct: 70 SFLSLPELVNYHRAQSL 86
Score = 37.8 bits (87), Expect = 0.001
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 3 SRRWFHPSISGVEA-EVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKI-QNTG 60
S WF IS EA L E G+FL+R S D+ LSVR V H KI + G
Sbjct: 1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60
Query: 61 DCYDLYGGEKFATLSELVQFY 81
L F +L ELV ++
Sbjct: 61 GRLHLNEAVSFLSLPELVNYH 81
>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) proteins. SH2
domain found in SOCS proteins. SOCS was first
recognized as a group of cytokine-inducible SH2 (CIS)
domain proteins comprising eight family members in
human (CIS and SOCS1-SOCS7). In addition to the SH2
domain, SOCS proteins have a variable N-terminal domain
and a conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation.
Loss of SOCS activity results in excessive cytokine
signaling associated with a variety of hematopoietic,
autoimmune, and inflammatory diseases and certain
cancers. Members (SOCS4-SOCS7) were identified by their
conserved SOCS box, an adapter motif of 3 helices that
associates substrate binding domains, such as the SOCS
SH2 domain, ankryin, and WD40 with ubiquitin ligase
components. These show limited cytokine induction. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 100
Score = 37.9 bits (88), Expect = 0.001
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
W+ I+ EAE L DGSFLVR S + +LS R +G+ H +I+++ +
Sbjct: 12 WYWGPITRWEAEGKLANVP-DGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSF 70
Query: 66 YG---GEKFATLSELVQFYM 82
Y E ++ +L++ +
Sbjct: 71 YEQPDVEGHTSIVDLIEHSI 90
Score = 31.7 bits (72), Expect = 0.15
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 27/101 (26%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
W+ G ++ EAE K A +GSFLVR+S
Sbjct: 12 WYWGPITRWEAEG------------------KLANVP------DGSFLVRDSSDDRYLLS 47
Query: 172 LSVRTDDKVTHVMIRCQAEK---YDVGGGEQFDSLTQLIEH 209
LS R+ K H I + Y+ E S+ LIEH
Sbjct: 48 LSFRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEH 88
>gnl|CDD|198208 cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src homology 2 (SH2)
domain found in Zeta-chain-associated protein kinase 70
(ZAP-70) and Spleen tyrosine kinase (Syk) proteins.
ZAP-70 and Syk comprise a family of hematopoietic cell
specific protein tyrosine kinases (PTKs) that are
required for antigen and antibody receptor function.
ZAP-70 is expressed in T and natural killer (NK) cells
and Syk is expressed in B cells, mast cells,
polymorphonuclear leukocytes, platelets, macrophages,
and immature T cells. They are required for the proper
development of T and B cells, immune receptors, and
activating NK cells. They consist of two N-terminal Src
homology 2 (SH2) domains and a C-terminal kinase domain
separated from the SH2 domains by a linker or hinge
region. Phosphorylation of both tyrosine residues within
the Immunoreceptor Tyrosine-based Activation Motifs
(ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the
Src-family PTKs is required for efficient interaction of
ZAP-70 and Syk with the receptor subunits and for
receptor function. ZAP-70 forms two phosphotyrosine
binding pockets, one of which is shared by both SH2
domains. In Syk the two SH2 domains do not form such a
phosphotyrosine-binding site. The SH2 domains here are
believed to function independently. In addition, the two
SH2 domains of Syk display flexibility in their relative
orientation, allowing Syk to accommodate a greater
variety of spacing sequences between the ITAM
phosphotyrosines and singly phosphorylated non-classical
ITAM ligands. This model contains the C-terminus SH2
domains of both Syk and Zap70. In general SH2 domains
are involved in signal transduction. They typically
bind pTyr-containing ligands via two surface pockets, a
pTyr and hydrophobic binding pocket, allowing proteins
with SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 95
Score = 35.8 bits (82), Expect = 0.006
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 24/101 (23%)
Query: 112 WFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFV 171
WFHG++S +E+EQ++L K NG FL+R + G +
Sbjct: 2 WFHGKISREESEQIVLIGSKT----------------------NGKFLIRARDNN-GSYA 38
Query: 172 LSVRTDDKVTHVMI-RCQAEKYDVGGGEQFDSLTQLIEHYK 211
L + + KV H I + + K + G++FD+L QL+EHY
Sbjct: 39 LCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYS 79
>gnl|CDD|198279 cd10416, SH2_SH2D2A, Src homology 2 domain found in the SH2 domain
containing protein 2A (SH2D2A). SH2D2A contains a
single SH2 domain. In general SH2 domains are involved
in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 102
Score = 35.0 bits (80), Expect = 0.014
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 31/112 (27%)
Query: 108 TTERWFHGQLSGKEAEQLILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKP 167
WFHG ++ +EAE+L L+ G +LVR S+S
Sbjct: 5 AAPAWFHGFITRREAERL-LEPKPQGCYLVRFSESAVT---------------------- 41
Query: 168 GDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDS----LTQLIEHYKRNPM 215
FVL+ R+ H ++ + V GE DS L L+ HY +P+
Sbjct: 42 --FVLTYRSRTCCRHFLLAQLRDGRHVVLGE--DSAHARLQDLLLHYTAHPL 89
Score = 30.8 bits (69), Expect = 0.38
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 6 WFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDL 65
WFH I+ EAE LLE G +LVR S S F L+ R H + D +
Sbjct: 9 WFHGFITRREAE-RLLEPKPQGCYLVRFSESAV-TFVLTYRSRTCCRHFLLAQLRDGRHV 66
Query: 66 YGGEK--FATLSELVQFYME 83
GE A L +L+ Y
Sbjct: 67 VLGEDSAHARLQDLLLHYTA 86
>gnl|CDD|198222 cd10359, SH2_SH3BP2, Src homology 2 domain found in c-Abl SH3
domain-binding protein-2 (SH3BP2). The adaptor protein
3BP2/SH3BP2 plays a regulatory role in signaling from
immunoreceptors. The protein-tyrosine kinase Syk
phosphorylates 3BP2 which results in the activation of
Rac1 through the interaction with the SH2 domain of Vav1
and induces the binding to the SH2 domain of the
upstream protein-tyrosine kinase Lyn and enhances its
kinase activity. 3BP2 has a positive regulatory role in
IgE-mediated mast cell activation. In lymphocytes,
engagement of T cell or B cell receptors triggers
tyrosine phosphorylation of 3BP2. Suppression of the
3BP2 expression by siRNA results in the inhibition of T
cell or B cell receptor-mediated activation of NFAT.
3BP2 is required for the proliferation of B cells and B
cell receptor signaling. Mutations in the 3BP2 gene are
responsible for cherubism resulting in excessive bone
resorption in the jaw. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 33.8 bits (77), Expect = 0.039
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 134 SFLVRESQSKEAEQLILQKG-----KNGSFLVRESQSKPGDFVLSV--RTDDKVTHVMIR 186
S +S+E E+L ++G + +R S S G VL V +KV + I
Sbjct: 1 STFKNTMESREVERLFKATSPKGGPQDGLYCIRNS-STKGGKVLVVWDGGAEKVRNYRIF 59
Query: 187 CQAEKYDVGGGEQFDSLTQLIEHYKR 212
+ K+ + E F SL L+EHY
Sbjct: 60 EKDCKFYLHEREVFSSLGSLVEHYAT 85
>gnl|CDD|198174 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homology 2 (SH2)
domain found in Spt6. N-terminal SH2 domain in Spt6.
Spt6 is an essential transcription elongation factor
and histone chaperone that binds the C-terminal repeat
domain (CTD) of RNA polymerase II. Spt6 contains a
tandem SH2 domain with a novel structure and
CTD-binding mode. The tandem SH2 domain binds to a
serine 2-phosphorylated CTD peptide in vitro, whereas
its N-terminal SH2 subdomain does not. CTD binding
requires a positively charged crevice in the C-terminal
SH2 subdomain, which lacks the canonical
phospho-binding pocket of SH2 domains. The tandem SH2
domain is apparently required for transcription
elongation in vivo as its deletion in cells is lethal
in the presence of 6-azauracil. In general SH2 domains
are involved in signal transduction. They typically
bind pTyr-containing ligands via two surface pockets, a
pTyr and hydrophobic binding pocket, allowing proteins
with SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 85
Score = 32.2 bits (74), Expect = 0.099
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 8 HPS---ISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVRL-NGEVTHIKIQNTGDCY 63
HP ++ +AE L + G ++RPS T++ ++ +G HI I+
Sbjct: 2 HPLFKNVNYKQAEAYLKSKD-VGEVVIRPSSKGVDHLTVTWKVADGVYQHIDIEELNKEN 60
Query: 64 DL-------YGGEKFATLSELV 78
GGE++ L E++
Sbjct: 61 PFSLGKELIIGGEEYEDLDEII 82
Score = 31.1 bits (71), Expect = 0.21
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 142 SKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVT-HVMIRCQAEKYDVG----- 195
K+AE L+ G ++R S ++ + D V H+ I + K +
Sbjct: 10 YKQAEAY-LKSKDVGEVVIRPSSKGVDHLTVTWKVADGVYQHIDIE-ELNKENPFSLGKE 67
Query: 196 ---GGEQFDSLTQLIEHY 210
GGE+++ L ++I +
Sbjct: 68 LIIGGEEYEDLDEIIARF 85
>gnl|CDD|214720 smart00557, IG_FLMN, Filamin-type immunoglobulin domains. These
form a rod-like structure in the actin-binding
cytoskeleton protein, filamin. The C-terminal repeats
of filamin bind beta1-integrin (CD29).
Length = 93
Score = 31.8 bits (73), Expect = 0.16
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 12 SGVEAEVLLLERGYDGSFLVR--PSRSNPGDFTLSVRLNGEVTHIK 55
SG + V + + G DG++ V P+ PGD+T++V+ GE HI
Sbjct: 42 SGKKVPVEVKDNG-DGTYTVSYTPTE--PGDYTVTVKFGGE--HIP 82
>gnl|CDD|241125 cd12681, RRM_SKAR, RNA recognition motif in S6K1 Aly/REF-like
target (SKAR) and similar proteins. This subgroup
corresponds to the RRM of SKAR, also termed polymerase
delta-interacting protein 3 (PDIP3), 46 kDa DNA
polymerase delta interaction protein (PDIP46), belonging
to the Aly/REF family of RNA binding proteins that have
been implicated in coupling transcription with pre-mRNA
splicing and nucleo-cytoplasmic mRNA transport. SKAR is
widely expressed and localizes to the nucleus. It may be
a critical player in the function of S6K1 in cell and
organism growth control by binding the activated,
hyperphosphorylated form of S6K1 but not S6K2.
Furthermore, SKAR functions as a protein partner of the
p50 subunit of DNA polymerase delta. In addition, SKAR
may have particular importance in pancreatic beta cell
size determination and insulin secretion. SKAR contains
a well conserved RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain).
Length = 69
Score = 29.2 bits (66), Expect = 0.75
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 232 TRITVSNIHDRVTE 245
TR+ VSN+H VTE
Sbjct: 1 TRLVVSNLHPSVTE 14
>gnl|CDD|216033 pfam00630, Filamin, Filamin/ABP280 repeat.
Length = 93
Score = 29.2 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 12 SGVEAEVLLLERGYDGSFLVR--PSRSNPGDFTLSVRLNGEVTHIK 55
SG + V +++ G DG++ V P+ PGD+T+SV+ NG+ HI
Sbjct: 48 SGSKVPVEVIDNG-DGTYTVSYTPTE--PGDYTVSVKFNGQ--HIP 88
>gnl|CDD|198175 cd09919, SH2_STAT_family, Src homology 2 (SH2) domain found in
signal transducer and activator of transcription (STAT)
family. STAT proteins mediate the signaling of
cytokines and a number of growth factors from the
receptors of these extracellular signaling molecules to
the cell nucleus. STATs are specifically phosphorylated
by receptor-associated Janus kinases, receptor tyrosine
kinases, or cytoplasmic tyrosine kinases. The
phosphorylated STAT molecules dimerize by reciprocal
binding of their SH2 domains to the phosphotyrosine
residues. These dimeric STATs translocate into the
nucleus, bind to specific DNA sequences, and regulate
the transcription of their target genes. However there
are a number of unphosphorylated STATs that travel
between the cytoplasm and nucleus and some STATs that
exist as dimers in unstimulated cells that can exert
biological functions independent of being activated by a
receptor. There are seven mammalian STAT family members
which have been identified: STAT1, STAT2, STAT3, STAT4,
STAT5 (STAT5A and STAT5B), and STAT6. There are 6
conserved domains in STAT: N-terminal domain (NTD),
coiled-coil domain (CCD), DNA-binding domain (DBD),
alpha-helical linker domain (LD), SH2 domain, and
transactivation domain (TAD). NTD is involved in
dimerization of unphosphorylated STATs monomers and for
the tetramerization between STAT1, STAT3, STAT4 and
STAT5 on promoters with two or more tandem STAT binding
sites. It also plays a role in promoting interactions
with transcriptional co-activators such as CREB binding
protein (CBP)/p300, as well as being important for
nuclear import and deactivation of STATs involving
tyrosine de-phosphorylation. The CCD interacts with
other proteins, such as IFN regulatory protein 9
(IRF-9/p48) with STAT1 and c-JUN with STAT3 and is also
thought to participate in the negative regulation of
these proteins. Distinct genes are bound to STATs via
their DBD domain. This domain is also involved in
nuclear translocation of activated STAT1 and STAT3
phosphorylated dimers upon cytokine stimulation. LD
links the DNA-binding and SH2 domains and is important
for the transcriptional activation of STAT1 in response
to IFN-gamma. It also plays a role in protein-protein
interactions and has also been implicated in the
constitutive nucleocytoplasmic shuttling of
unphosphorylated STATs in resting cells. The SH2 domain
is necessary for receptor association and tyrosine
phosphodimer formation. Residues within this domain may
be particularly important for some cellular functions
mediated by the STATs as well as residues adjacent to
this domain. The TAD interacts with several proteins,
namely minichromosome maintenance complex component 5
(MCM5), breast cancer 1 (BRCA1) and CBP/p300. TAD also
contains a modulatory phosphorylation site that
regulates STAT activity and is necessary for maximal
transcription of a number of target genes. The conserved
tyrosine residue present in the C-terminus is crucial
for dimerization via interaction with the SH2 domain
upon the interaction of the ligand with the receptor.
STAT activation by tyrosine phosphorylation also
determines nuclear import and retention, DNA binding to
specific DNA elements in the promoters of responsive
genes, and transcriptional activation of STAT dimers. In
addition to the SH2 domain there is a coiled-coil
domain, a DNA binding domain, and a transactivation
domain in the STAT proteins. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 115
Score = 29.1 bits (66), Expect = 1.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 142 SKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDD 178
SKE + +L+K G+FL+R S S+ G ++ +D
Sbjct: 27 SKEEAEDLLKKKPPGTFLLRFSDSELGGITIAWVNED 63
>gnl|CDD|198266 cd10403, SH2_STAP1, Src homology 2 domain found in
Signal-transducing adaptor protein 1 (STAP1). STAP1 is
a signal-transducing adaptor protein. It is composed of
a Pleckstrin homology (PH) and SH2 domains along with
several tyrosine phosphorylation sites. STAP-1 is an
ortholog of BRDG1 (BCR downstream signaling 1). STAP1
protein functions as a docking protein acting
downstream of Tec tyrosine kinase in B cell antigen
receptor signaling. The protein is phosphorylated by
Tec and participates in a positive feedback loop,
increasing Tec activity. STAP1 has been shown to
interact with C19orf2, an unconventional prefoldin RPB5
interactor. In general SH2 domains are involved in
signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 94
Score = 28.5 bits (64), Expect = 2.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 7 FHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGDFTLSVR--LNGEV-THIKIQNTGDCY 63
F+ +S EAE LL G+ L+RP S+ +++++ R +N H ++ + G Y
Sbjct: 4 FYK-VSRKEAEELLERNPSCGNMLLRPG-SDSSNYSITTRQEINKPRIKHYRVMSRGQGY 61
>gnl|CDD|198256 cd10393, SH2_RIN1, Src homology 2 (SH2) domain found in Ras and Rab
interactor 1 (RIN1)-like proteins. RIN1, a member of
the RIN (AKA Ras interaction/interference) family, have
multifunctional domains including SH2 and proline-rich
(PR) domains in the N-terminal region, and RIN-family
homology (RH), VPS9 and Ras-association (RA) domains in
the C-terminal region. RIN proteins function as
Rab5-GEFs. Previous studies showed that RIN1 interacts
with EGF receptors via its SH2 domain and regulates
trafficking and degradation of EGF receptors via its
interaction with STAM, indicating a vital role for RIN1
in regulating endosomal trafficking of receptor tyrosine
kinases (RTKs). RIN1 was first identified as a
Ras-binding protein that suppresses the activated RAS2
allele in S. cerevisiae. RIN1 binds to the activated Ras
through its carboxyl-terminal domain and this
Ras-binding domain also binds to 14-3-3 proteins as
Raf-1 does. The SH2 domain of RIN1 are thought to
interact with the phosphotyrosine-containing proteins,
but the physiological partners for this domain are
unknown. The proline-rich domain in RIN1 is similar to
the consensus SH3 binding regions. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 28.3 bits (63), Expect = 2.7
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 116 QLSGKEAEQL-ILQKGKNGSFLVRESQSKEAEQLILQKGKNGSFLVRESQSKPGDFVLSV 174
QL A L +L+ G+FLVR+S +++ + L VR ++ FV S
Sbjct: 14 QLRANAAAALHVLRTEPPGTFLVRKSNTRQCQALC----------VRLPEASGPSFVSS- 62
Query: 175 RTDDKVTHVMIRCQAEKYDVGGGE-QFDSLTQLIEHY 210
I+ + G E F L QLI Y
Sbjct: 63 --------HYIQESPGGVSLEGSELTFPDLVQLICAY 91
>gnl|CDD|233947 TIGR02600, Verru_Chthon_A, Verru_Chthon cassette protein A. In
Verrucomicrobium spinosum and Chthoniobacter flavus, a
four-gene operon that includes proteins with an
N-terminal signal sequence for cleavage and methylation
recurs many times. Each operon is likely to encode a
membrane complex, the function of which is unknown. This
model represents a long protein from this putative
membrame complex, with members averaging about 1300 amino
acids. The N-terminal region includes an apparent signal
sequence. The function is unknown. Most cassettes are
adjacent to an unusually large protein with both an outer
membrane autotransporter region and PEP-CTERM putative
protein-sorting motif [Cell envelope, Surface
structures].
Length = 1265
Score = 29.8 bits (67), Expect = 3.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 232 TRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRH 270
TR V +H RV L+K S+ A W+E L E R
Sbjct: 1182 TRSNVFTVHFRVQSLKKARSTDADEWDEDRDLVTSEYRG 1220
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA
replication, recombination, and repair].
Length = 792
Score = 29.7 bits (67), Expect = 4.2
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 17 EVLLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTGDCYDLYGGEKFA 72
V+ L + F V S P D+ L + ++++ + D Y G +
Sbjct: 22 SVVKLVATFRPYFYVTLDNSRPEDYVLKILNRRLDDVLELEEVENVPDPYLGREVE 77
>gnl|CDD|212501 cd11642, SUMT, Uroporphyrin-III C-methyltransferase
(S-Adenosyl-L-methionine:uroporphyrinogen III
methyltransferase, SUMT). SUMT, an enzyme of the
cobalamin and siroheme biosynthetic pathway, catalyzes
the transformation of uroporphyrinogen III into
precorrin-2. It transfers two methyl groups from
S-adenosyl-L-methionine to the C-2 and C-7 atoms of
uroporphyrinogen III to yield precorrin-2 via the
intermediate formation of precorrin-1. SUMT is the first
enzyme committed to the biosynthesis of siroheme or
cobalamin (vitamin B12), and precorrin-2 is a common
intermediate in the biosynthesis of corrinoids such as
vitamin B12, siroheme and coenzyme F430. In some
organisms, the SUMT domain is fused to the precorrin-2
oxidase/ferrochelatase domain to form siroheme synthase
or to uroporphyrinogen-III synthase to form bifunctional
uroporphyrinogen-III methylase/uroporphyrinogen-III
synthase.
Length = 233
Score = 28.9 bits (66), Expect = 4.4
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 18/56 (32%)
Query: 184 MIRCQAEKYDVG--GGEQFDSLTQ------LIEHYKRNPMVETSGTVVHLKQ--PF 229
+ AE VG G+ SL Q L+E+ + VV LK PF
Sbjct: 42 LAPPDAELIYVGKRPGKH--SLPQEEINELLVEYAREG------KRVVRLKGGDPF 89
>gnl|CDD|198248 cd10385, SH2_SOCS4, Src homology 2 (SH2) domain found in suppressor
of cytokine signaling (SOCS) proteins. SH2 domain found
in SOCS proteins. SOCS was first recognized as a group
of cytokine-inducible SH2 (CIS) domain proteins
comprising eight family members in human (CIS and
SOCS1-SOCS7). In addition to the SH2 domain, SOCS
proteins have a variable N-terminal domain and a
conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation. Loss
of SOCS activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. Members
(SOCS4-SOCS7) were identified by their conserved SOCS
box, an adapter motif of 3 helices that associates
substrate binding domains, such as the SOCS SH2 domain,
ankryin, and WD40 with ubiquitin ligase components.
These show limited cytokine induction. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 27.7 bits (61), Expect = 4.7
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 143 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQ--F 200
K A + +L+ G+FL+R+S + F +S R + H I + + F
Sbjct: 19 KYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVF 78
Query: 201 DS--LTQLIEHYK 211
S +T L+EHYK
Sbjct: 79 HSPDITGLLEHYK 91
>gnl|CDD|198243 cd10380, SH2_Jak3, Src homology 2 (SH2) domain in the Janus kinase
3 (Jak3) proteins. Jak3 is a member of the Janus kinase
(JAK) family of tyrosine kinases involved in cytokine
receptor-mediated intracellular signal transduction. It
is predominantly expressed in immune cells and
transduces a signal in response to its activation via
tyrosine phosphorylation by interleukin receptors.
Mutations in this gene are associated with autosomal
SCID (severe combined immunodeficiency disease). In
general SH2 domains are involved in signal transduction.
They typically bind pTyr-containing ligands via two
surface pockets, a pTyr and hydrophobic binding pocket,
allowing proteins with SH2 domains to localize to
tyrosine phosphorylated sites.
Length = 96
Score = 27.4 bits (61), Expect = 4.9
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 150 LQKG--KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYD-----VGGGEQFDS 202
L+K + GSF++R S F+L+V + C K + G F S
Sbjct: 28 LKKAGSEPGSFVLRRSPQDFDKFLLTVCVQTTLGLDYKDCLIRKNEGHFSLAGVSRSFSS 87
Query: 203 LTQLIEHY 210
L +L+ Y
Sbjct: 88 LKELLVTY 95
>gnl|CDD|147643 pfam05586, Ant_C, Anthrax receptor C-terminus region. This
region is found in the putatively cytoplasmic
C-terminus of the anthrax receptor.
Length = 93
Score = 27.4 bits (61), Expect = 5.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 2 SSRRWFHPSISGVEAEVLLLERGYDGSFLVRPSRSNPGD 40
R+W+ P ++A LL R YD L+RP+ PGD
Sbjct: 46 QQRKWYTPIKGRLDALWALLRRQYDRVSLMRPT---PGD 81
>gnl|CDD|224406 COG1489, SfsA, DNA-binding protein, stimulates sugar fermentation
[General function prediction only].
Length = 235
Score = 28.0 bits (63), Expect = 8.6
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 19 LLLERGYDGSFLVRPSRSNPGDFTLSVRLNGEVTHIKIQNTG 60
L L + + + R +R F V L+GE NTG
Sbjct: 2 LFLPPLQEATLIKRYNR-----FLADVELDGEEVTAHCPNTG 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,475,316
Number of extensions: 2124265
Number of successful extensions: 2134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 209
Length of query: 451
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 351
Effective length of database: 6,502,202
Effective search space: 2282272902
Effective search space used: 2282272902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)