BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8517
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/382 (58%), Positives = 262/382 (68%), Gaps = 57/382 (14%)
Query: 223 DCYDLYGGEKFATLSELVQFYMENQG---------------------------------K 249
D YDLYGGEKFATL+ELVQ+YME+ G K
Sbjct: 61 DYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGK 120
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDD----------KVTHVMIRCQAEKYD 299
EAE+L+ +KGK+GSFLVRESQS PGDFVLSVRT D KVTHVMIRCQ KYD
Sbjct: 121 EAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYD 180
Query: 300 VGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNATRITVSNIHDRVTELQK----E 355
VGGGE+FDSLT L+EHYK+NPMVET GTV+ LKQP N TRI + I RV EL K
Sbjct: 181 VGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKLAETT 240
Query: 356 NSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVP 415
+ K GFWEEFE+LQQQE + L++R+EGQ+ +N+NKNRYKNILPFDHTRV L D D + P
Sbjct: 241 DKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEP 300
Query: 416 GAEYINANYIQSE--------DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEM 467
++YINAN I E KSYIATQGCL +T+NDFW MV+QEN RVIVMTTKE+
Sbjct: 301 VSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEV 360
Query: 468 ERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSKGSE--SPRKIYHYHF 525
ERGK+KC KYWPD++ K YG + V N+ ES DY LRE +SK + + R ++ YHF
Sbjct: 361 ERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHF 420
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
+ WPDHGVPSDPG VL+FL EV
Sbjct: 421 RTWPDHGVPSDPGGVLDFLEEV 442
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 21/100 (21%)
Query: 101 DQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTN 160
+ I GPVVVHCSAGIGRTGTFIVID+++D I++ G+DC+ID+ +TIQ
Sbjct: 447 ESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMV--------- 497
Query: 161 SSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTL 200
SGMVQTEAQY+ +Y+AVQHYI+TL
Sbjct: 498 ------------RSQRSGMVQTEAQYRSIYMAVQHYIETL 525
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ G EAE L+L +G +GSFL R S+S PGD LSVR + VTH+ I+ + YD+
Sbjct: 7 FHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLY 66
Query: 302 GGEQFDSLTQLIEHYKRN--PMVETSGTVVHLKQPFNATRITVSN-IHDRVTELQKEN-- 356
GGE+F +L +L+++Y + + E +G V+ LK P N T H ++ + E
Sbjct: 67 GGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLL 126
Query: 357 --SSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDV 414
K G + ES Q + + R G N + K H ++ +++ DV
Sbjct: 127 TEKGKHGSFLVRES-QSHPGDFVLSVRTGDDKGESNDGKSK----VTHVMIRCQELKYDV 181
Query: 415 PGAEYINA 422
G E ++
Sbjct: 182 GGGERFDS 189
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/404 (47%), Positives = 263/404 (65%), Gaps = 59/404 (14%)
Query: 210 SIQLGREYTNIRC----DCYDLYGGEKFATLSELVQFYMENQG----------------- 248
S+++G + T+IR D YDLYGGEKFATL+ELV++Y + QG
Sbjct: 42 SVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLN 101
Query: 249 ----------------KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDD-------- 284
+AE L+ KG+ +FLVRES S+PGDFVLSV +D
Sbjct: 102 CSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSP 161
Query: 285 -KVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNATRITVS 343
+VTH+ + C+ +Y VGG E FDSLT L+EH+K+ + E SG V+L+QP+ ATR+ +
Sbjct: 162 LRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAA 221
Query: 344 NIHDRVTELQK----ENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
+I +RV EL K E+++KAGFWEEFESLQ+QE ++L R EGQ+ +N+ KNRYKNILP
Sbjct: 222 DIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILP 281
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSE-----DGGKSYIATQGCLPSTMNDFWSMVWQ 454
FDH+RV L+ D ++PG++YINANYI+++ + K+YIA+QGCL +T+NDFW M WQ
Sbjct: 282 FDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQ 341
Query: 455 ENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--K 512
EN RVIVMTT+E+E+G+NKC YWP+ + YG V N E TT+Y LR VS
Sbjct: 342 ENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLD 401
Query: 513 GSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYESV 556
+ R+I+HY + +WPDHGVPS+PG VL+FL + +N ES+
Sbjct: 402 NGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQ--INQRQESL 443
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 28/129 (21%)
Query: 99 ILDQIKKH-------GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHA 151
LDQI + GP++VH SAGIGRTGT IVIDM+++ I GLDC+IDIQ+TIQ
Sbjct: 432 FLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMV 491
Query: 152 WFKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRLIEEQKSI 211
SGMVQTEAQYKF+Y+A+ +I+T ++L Q
Sbjct: 492 ---------------------RAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEVLQSQK 530
Query: 212 QLGREYTNI 220
EY NI
Sbjct: 531 GQESEYGNI 539
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ + G +AE L+ +G +GSFL R S+ GDF LSVR D+VTH+ I+ + YD+
Sbjct: 5 FHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLY 64
Query: 302 GGEQFDSLTQLIEHYKRNPMV--ETSGTVVHLKQPFNATRIT 341
GGE+F +LT+L+E+Y + V + GT++HLK P N + T
Sbjct: 65 GGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPT 106
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/404 (47%), Positives = 263/404 (65%), Gaps = 59/404 (14%)
Query: 210 SIQLGREYTNIRC----DCYDLYGGEKFATLSELVQFYMENQG----------------- 248
S+++G + T+IR D YDLYGGEKFATL+ELV++Y + QG
Sbjct: 42 SVRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLN 101
Query: 249 ----------------KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDD-------- 284
+AE L+ KG+ +FLVRES S+PGDFVLSV +D
Sbjct: 102 CSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSP 161
Query: 285 -KVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNATRITVS 343
+VTH+ + C+ +Y VGG E FDSLT L+EH+K+ + E SG V+L+QP+ ATR+ +
Sbjct: 162 LRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAA 221
Query: 344 NIHDRVTELQK----ENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
+I +RV EL K E+++KAGFWEEFESLQ+QE ++L R EGQ+ +N+ KNRYKNILP
Sbjct: 222 DIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILP 281
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSE-----DGGKSYIATQGCLPSTMNDFWSMVWQ 454
FDH+RV L+ D ++PG++YINANYI+++ + K+YIA+QGCL +T+NDFW M WQ
Sbjct: 282 FDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQ 341
Query: 455 ENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--K 512
EN RVIVMTT+E+E+G+NKC YWP+ + YG V N E TT+Y LR VS
Sbjct: 342 ENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLD 401
Query: 513 GSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYESV 556
+ R+I+HY + +WPDHGVPS+PG VL+FL + +N ES+
Sbjct: 402 NGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQ--INQRQESL 443
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 28/113 (24%)
Query: 99 ILDQIKKH-------GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHA 151
LDQI + GP++VHCSAGIGRTGT IVIDM+++ I GLDC+IDIQ+TIQ
Sbjct: 432 FLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMV 491
Query: 152 WFKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
SGMVQTEAQYKF+Y+A+ +I+T ++L
Sbjct: 492 ---------------------RAQRSGMVQTEAQYKFIYVAIAQFIETTKKKL 523
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ + G +AE L+ +G +GSFL R S+ GDF LSVR D+VTH+ I+ + YD+
Sbjct: 5 FHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLY 64
Query: 302 GGEQFDSLTQLIEHYKRNPMV--ETSGTVVHLKQPFNATRIT 341
GGE+F +LT+L+E+Y + V + GT++HLK P N + T
Sbjct: 65 GGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPT 106
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 148/199 (74%), Gaps = 10/199 (5%)
Query: 359 KAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAE 418
K GFWEEFE+LQQQE + L++R+EGQ+ +N+NKNRYKNILPFDHTRV L D D + P ++
Sbjct: 31 KQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSD 90
Query: 419 YINANYIQSE--------DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERG 470
YINAN I E KSYIATQGCL +T+NDFW MV+QEN RVIVMTTKE+ERG
Sbjct: 91 YINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERG 150
Query: 471 KNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSKGSE--SPRKIYHYHFQAW 528
K+KC KYWPD++ K YG + V N+ ES DY LRE +SK + + R ++ YHF+ W
Sbjct: 151 KSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTW 210
Query: 529 PDHGVPSDPGCVLNFLYEV 547
PDHGVPSDPG VL+FL EV
Sbjct: 211 PDHGVPSDPGGVLDFLEEV 229
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 21/104 (20%)
Query: 101 DQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTN 160
+ I GPVVVHCSAGIGRTGTFIVID+++D I++ G+DC+ID+ +TIQ
Sbjct: 234 ESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMV--------- 284
Query: 161 SSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
SGMVQTEAQY+F+Y+AVQHYI+TL +R+
Sbjct: 285 ------------RSQRSGMVQTEAQYRFIYMAVQHYIETLQRRI 316
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 144/195 (73%), Gaps = 7/195 (3%)
Query: 360 AGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEY 419
+GFWEEFESLQ+QE ++L R EGQ+ +N+ KNRYKNILPFDH+RV L+ D ++PG++Y
Sbjct: 2 SGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDY 61
Query: 420 INANYIQSE-----DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKC 474
INANYI+++ + K+YIA+QGCL +T+NDFW M WQEN RVIVMTT+E+E+G+NKC
Sbjct: 62 INANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKC 121
Query: 475 AKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--KGSESPRKIYHYHFQAWPDHG 532
YWP+ + YG V N E TT+Y LR VS + R+I+HY + +WPDHG
Sbjct: 122 VPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHG 181
Query: 533 VPSDPGCVLNFLYEV 547
VPS+PG VL+FL ++
Sbjct: 182 VPSEPGGVLSFLDQI 196
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 28/112 (25%)
Query: 100 LDQIKKH-------GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAW 152
LDQI + GP++VH SAGIGRTGT IVIDM+++ I GLDC+IDIQ+TIQ
Sbjct: 193 LDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMV- 251
Query: 153 FKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
SGMVQTEAQYKF+Y+A+ +I+T ++L
Sbjct: 252 --------------------RAQRSGMVQTEAQYKFIYVAIAQFIETTKKKL 283
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 144/195 (73%), Gaps = 7/195 (3%)
Query: 360 AGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEY 419
+GFWEEFESLQ+QE ++L R EGQ+ +N+ KNRYKNILPFDH+RV L+ D ++PG++Y
Sbjct: 22 SGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDY 81
Query: 420 INANYIQSE-----DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKC 474
INANYI+++ + K+YIA+QGCL +T+NDFW M WQEN RVIVMTT+E+E+G+NKC
Sbjct: 82 INANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKC 141
Query: 475 AKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--KGSESPRKIYHYHFQAWPDHG 532
YWP+ + YG V N E TT+Y LR VS + R+I+HY + +WPDHG
Sbjct: 142 VPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHG 201
Query: 533 VPSDPGCVLNFLYEV 547
VPS+PG VL+FL ++
Sbjct: 202 VPSEPGGVLSFLDQI 216
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 28/112 (25%)
Query: 100 LDQIKKH-------GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAW 152
LDQI + GP++VHCSAGIGRTGT IVIDM+++ I GLDC+IDIQ+TIQ
Sbjct: 213 LDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMV- 271
Query: 153 FKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
SGMVQTEAQYKF+Y+A+ +I+T ++L
Sbjct: 272 --------------------RAQRSGMVQTEAQYKFIYVAIAQFIETTKKKL 303
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 143/194 (73%), Gaps = 7/194 (3%)
Query: 361 GFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYI 420
GFWEEFESLQ+QE ++L R EGQ+ +N+ KNRYKNILPFDH+RV L+ D ++PG++YI
Sbjct: 1 GFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 60
Query: 421 NANYIQSE-----DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCA 475
NANYI+++ + K+YIA+QGCL +T+NDFW M WQEN RVIVMTT+E+E+G+NKC
Sbjct: 61 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 120
Query: 476 KYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--KGSESPRKIYHYHFQAWPDHGV 533
YWP+ + YG V N E TT+Y LR VS + R+I+HY + +WPDHGV
Sbjct: 121 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 180
Query: 534 PSDPGCVLNFLYEV 547
PS+PG VL+FL ++
Sbjct: 181 PSEPGGVLSFLDQI 194
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 28/112 (25%)
Query: 100 LDQIKKH-------GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAW 152
LDQI + GP++VH SAGIGRTGT IVIDM+++ I GLDC+IDIQ+TIQ
Sbjct: 191 LDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMV- 249
Query: 153 FKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
SGMVQTEAQYKF+Y+A+ +I+T ++L
Sbjct: 250 --------------------RAQRSGMVQTEAQYKFIYVAIAQFIETTKKKL 281
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 143/194 (73%), Gaps = 7/194 (3%)
Query: 361 GFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYI 420
GFWEEFESLQ+QE ++L R EGQ+ +N+ KNRYKNILPFDH+RV L+ D ++PG++YI
Sbjct: 1 GFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYI 60
Query: 421 NANYIQSE-----DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCA 475
NANYI+++ + K+YIA+QGCL +T+NDFW M WQEN RVIVMTT+E+E+G+NKC
Sbjct: 61 NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCV 120
Query: 476 KYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--KGSESPRKIYHYHFQAWPDHGV 533
YWP+ + YG V N E TT+Y LR VS + R+I+HY + +WPDHGV
Sbjct: 121 PYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 180
Query: 534 PSDPGCVLNFLYEV 547
PS+PG VL+FL ++
Sbjct: 181 PSEPGGVLSFLDQI 194
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 72/128 (56%), Gaps = 28/128 (21%)
Query: 100 LDQIKKH-------GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAW 152
LDQI + GP++VHCSAGIGRTGT IVIDM+++ I GLDC+IDIQ+TIQ
Sbjct: 191 LDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMV- 249
Query: 153 FKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRLIEEQKSIQ 212
SGMVQTEAQYKF+Y+A+ +I+T ++L Q
Sbjct: 250 --------------------RAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEVLQSQKG 289
Query: 213 LGREYTNI 220
EY NI
Sbjct: 290 QESEYGNI 297
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 108/181 (59%), Positives = 133/181 (73%), Gaps = 10/181 (5%)
Query: 377 LFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSE-------- 428
L++R+EGQ+ +N+NKNRYKNILPFDHTRV L D D + P ++YINAN I E
Sbjct: 2 LYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNS 61
Query: 429 DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYG 488
KSYIATQGCL +T+NDFW MV+QEN RVIVMTTKE+ERGK+KC KYWPD++ K YG
Sbjct: 62 KPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYG 121
Query: 489 AVCVNNMYESVTTDYILREFLVSKGSE--SPRKIYHYHFQAWPDHGVPSDPGCVLNFLYE 546
+ V N+ ES DY LRE +SK + + R ++ YHF+ WPDHGVPSDPG VL+FL E
Sbjct: 122 VMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEE 181
Query: 547 V 547
V
Sbjct: 182 V 182
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 70/104 (67%), Gaps = 21/104 (20%)
Query: 101 DQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTN 160
+ I GPVVVHCSAGIGRTGTFIVID+++D I++ G+DC+ID+ +TIQ +
Sbjct: 187 ESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR----- 241
Query: 161 SSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
SGMVQTEAQY+F+Y+AVQHYI+TL +RL
Sbjct: 242 ----------------SGMVQTEAQYRFIYMAVQHYIETLQRRL 269
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 9/209 (4%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I V+++ +T++++ GF EE+E+L + ++ T +E + NRNKNRY NI+
Sbjct: 4 IRVADLLQHITQMKR--GQGYGFKEEYEALPEGQTASWDTAKEDE---NRNKNRYGNIIS 58
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRV 459
+DH+RV+L +D D P ++YINANYI + YIATQG + T+ DFW M+WQEN
Sbjct: 59 YDHSRVRLLVLDGD-PHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSAS 117
Query: 460 IVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLV-SKGSESPR 518
IVM T +E G+ KC +YWPDD ++ YG + V + +Y++R F V KG R
Sbjct: 118 IVMVTNLVEVGRVKCVRYWPDD--TEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIR 175
Query: 519 KIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
++ +HF +WPDHGVP +L F+ +V
Sbjct: 176 ELRLFHFTSWPDHGVPCYATGLLGFVRQV 204
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 24/87 (27%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAG GRTG FI ID +LD + G+ +DI F
Sbjct: 213 GPIVVHCSAGAGRTGCFIAIDTMLDMAENEGV---VDI---------------------F 248
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ + +VQTE QY FV+ A+
Sbjct: 249 NCVRELRAQRVNLVQTEEQYVFVHDAI 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
AGP+VVHCSAG GRTG FI ID +LD + G V
Sbjct: 212 AGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVV 245
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 10/186 (5%)
Query: 362 FWEEFESLQQQESRHLFTRREGQKLD---NRNKNRYKNILPFDHTRVKLKDVDEDVPGAE 418
F EEFE L +H+ + D NR KNR+ NILP+DH+R KL+ VD+D G++
Sbjct: 46 FSEEFEEL-----KHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDD-EGSD 99
Query: 419 YINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYW 478
YINANY+ + + +I TQG L ST +DFW M W+ N R IVM T+ E+G+ KC +YW
Sbjct: 100 YINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYW 159
Query: 479 PDDHQSKTYGAVCVNNMYESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPG 538
P+D YG + V + +S D+++ EF++ +GSE R + H+HF WPD GVP+ P
Sbjct: 160 PNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRGSEQ-RILRHFHFTTWPDFGVPNPPQ 218
Query: 539 CVLNFL 544
++ F+
Sbjct: 219 TLVRFV 224
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 24/79 (30%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
P+VVHCSAG+GR+GTFI +D IL QI +T+ +F
Sbjct: 237 PIVVHCSAGVGRSGTFITLDRILQQI------------------------NTSDYVDIFG 272
Query: 168 ITYKPYPNVSGMVQTEAQY 186
I Y MVQTE QY
Sbjct: 273 IVYAMRKERVWMVQTEQQY 291
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 78 PVVVHCSAGIGRTGTFIVIDMILDQI 103
P+VVHCSAG+GR+GTFI +D IL QI
Sbjct: 237 PIVVHCSAGVGRSGTFITLDRILQQI 262
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 387 DNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMN 446
+NR KNRY NILP+D TRVKL +VD+D P ++YINA+YI + + YI TQG LP T +
Sbjct: 66 ENRGKNRYNNILPYDATRVKLSNVDDD-PCSDYINASYIPGNNFRREYIVTQGPLPGTKD 124
Query: 447 DFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILR 506
DFW MVW++NV IVM T+ +E+G+ KC YWP D S YG + + + ESV ++ +R
Sbjct: 125 DFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIR 184
Query: 507 EFLV--SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
EF + + ++ R I H+H+ WPDHGVP ++ F+ V
Sbjct: 185 EFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTV 227
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 26/102 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP VVHCSAG+GRTGTFI +D IL Q+ + S ++
Sbjct: 238 GPTVVHCSAGVGRTGTFIALDRILQQL------------------------DSKDSVDIY 273
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRLIEEQ 208
+ + MVQTE QY +++ V+ ++ +++L EQ
Sbjct: 274 GAVHDLRLHRVHMVQTECQYVYLHQCVRDVLR--ARKLRSEQ 313
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 60 LIYSPRDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
+ + RD N S AGP VVHCSAG+GRTGTFI +D IL Q+ V ++
Sbjct: 223 FVRTVRDYINR--SPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIY 273
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 387 DNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMN 446
+NR KNRY NILP+D TRVKL +VD+D P ++YINA+YI + + YI TQG LP T +
Sbjct: 50 ENRGKNRYNNILPYDATRVKLSNVDDD-PCSDYINASYIPGNNFRREYIVTQGPLPGTKD 108
Query: 447 DFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILR 506
DFW MVW++NV IVM T+ +E+G+ KC YWP D S YG + + + ESV ++ +R
Sbjct: 109 DFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIR 168
Query: 507 EFLV--SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
EF + + ++ R I H+H+ WPDHGVP ++ F+ V
Sbjct: 169 EFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTV 211
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 60 LIYSPRDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
+ + RD N S AGP VVHCSAG+GRTGTFI +D IL Q+ V ++
Sbjct: 207 FVRTVRDYINR--SPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIY 257
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP VVHCSAG+GRTGTFI +D IL Q+ + S ++
Sbjct: 222 GPTVVHCSAGVGRTGTFIALDRILQQL------------------------DSKDSVDIY 257
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQR 203
+ + MVQTE QY +++ V+ ++ R
Sbjct: 258 GAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRARKLR 294
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 7/198 (3%)
Query: 355 ENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDV 414
+ S GF EE+ES + +S ++ Q NR KNRY NI+ +DH+RV L+ V++D
Sbjct: 39 KTSDSYGFKEEYESFFEGQSASWDVAKKDQ---NRAKNRYGNIIAYDHSRVILQPVEDD- 94
Query: 415 PGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKC 474
P ++YINANYI YIATQG + T+ DFW M+WQE IVM T +E G+ KC
Sbjct: 95 PSSDYINANYIDGYQRPSHYIATQGPVHETVYDFWRMIWQEQSACIVMVTNLVEVGRVKC 154
Query: 475 AKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
KYWPDD ++ YG V + +Y++R F L +G R++ +HF WPDHGV
Sbjct: 155 YKYWPDD--TEVYGDFKVTCVEMEPLAEYVVRTFTLERRGYNEIREVKQFHFTGWPDHGV 212
Query: 534 PSDPGCVLNFLYEVCVNN 551
P +L+F+ V ++N
Sbjct: 213 PYHATGLLSFIRRVKLSN 230
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 75 SAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
SAGP+VVHCSAG GRTG +IVID++LD ++ G V ++
Sbjct: 233 SAGPIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIY 270
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 24/87 (27%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAG GRTG +IVID++LD ++ G+ +DI N +L
Sbjct: 235 GPIVVHCSAGAGRTGCYIVIDIMLDMAEREGV---VDIY--------------NCVKALR 277
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
S MVQTE QY F++ A+
Sbjct: 278 S-------RRINMVQTEEQYIFIHDAI 297
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 333 QPFNATRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKN 392
+P + I V N + Q + S GF EE+E L+ + + +NR KN
Sbjct: 19 KPKKSKLIRVENFEAYFKKQQAD--SNCGFAEEYEDLKLIGIS--LPKYAAEIAENRGKN 74
Query: 393 RYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMV 452
RY N+LP+D +RVKL +YINANY+ K +IATQG LP+T+ DFW MV
Sbjct: 75 RYNNVLPYDISRVKLSVQTHST--DDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMV 132
Query: 453 WQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS- 511
W++NV IVM TK +E+G+ KC +YWP Q++ YG + V E V ++ +R+F+V
Sbjct: 133 WEKNVYAIVMLTKCVEQGRTKCEEYWP-SKQAQDYGDITVAMTSEVVLPEWTIRDFVVKN 191
Query: 512 -KGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ SES + +HF +WPDHGVP ++NF Y V
Sbjct: 192 MQSSES-HPLRQFHFTSWPDHGVPDTTDLLINFRYLV 227
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 24/90 (26%)
Query: 100 LDQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPST 159
+ QI P++VHCSAG+GRTGTFI ID ++ QI+
Sbjct: 231 MKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENE----------------------- 267
Query: 160 NSSTSLFSITYKPYPNVSGMVQTEAQYKFV 189
++ ++ I Y + MVQTE QY F+
Sbjct: 268 -NTVDVYGIVYDLRMHRPLMVQTEDQYVFL 296
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 70 MKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
MK P++VHCSAG+GRTGTFI ID ++ QI+ V V+
Sbjct: 231 MKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVY 273
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 102/163 (62%), Gaps = 8/163 (4%)
Query: 387 DNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMN 446
+NR KNRY NILP+D TRVKL G++YINA+YI + + YI TQG LP T +
Sbjct: 52 ENRGKNRYNNILPYDATRVKLSG------GSDYINASYIPGNNFRREYIVTQGPLPGTKD 105
Query: 447 DFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILR 506
DFW MVW++NV IVM T+ +E+G+ KC YWP D S YG + + + ESV ++ +R
Sbjct: 106 DFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIR 165
Query: 507 EFLV--SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
EF + + ++ R I H+H+ WPDHGVP ++ F+ V
Sbjct: 166 EFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTV 208
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 60 LIYSPRDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
+ + RD N S AGP VVHCSAG+GRTGTFI +D IL Q+ V ++
Sbjct: 204 FVRTVRDYINR--SPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIY 254
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP VVHCSAG+GRTGTFI +D IL Q+ + S ++
Sbjct: 219 GPTVVHCSAGVGRTGTFIALDRILQQL------------------------DSKDSVDIY 254
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQR 203
+ + MVQTE QY +++ V+ ++ R
Sbjct: 255 GAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRARKLR 291
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 530 DHGVPSDPGCVLNFLYEVCVNNMYESVTTDYILREFLV--SKGSESPRKIYHYHFQAWPD 587
DH P+D + + ++ + + ESV ++ +REF + + ++ R I H+H+ WPD
Sbjct: 134 DHYWPADQDSL--YYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPD 191
Query: 588 HGVPSDPGCVLNFLYEV 604
HGVP ++ F+ V
Sbjct: 192 HGVPETTQSLIQFVRTV 208
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 118/211 (55%), Gaps = 8/211 (3%)
Query: 342 VSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFD 401
++++ D + L+ + K F +E+ES+ + FT N+ KNRY N++ +D
Sbjct: 2 ITDLADNIERLKANDGLK--FSQEYESIDPGQQ---FTWENSNLEVNKPKNRYANVIAYD 56
Query: 402 HTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIV 461
H+RV L +D VPG++YINANYI +YIATQG LP TM DFW MVW++ +V
Sbjct: 57 HSRVILTSID-GVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVV 115
Query: 462 MTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSK-GSESPRKI 520
M T+ E+ + KC +YWP ++T G + V + Y +R F + K GS R++
Sbjct: 116 MMTRLEEKSRVKCDQYWP-ARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKREL 174
Query: 521 YHYHFQAWPDHGVPSDPGCVLNFLYEVCVNN 551
+ F AWPDHGVP P +L FL V N
Sbjct: 175 RQFQFMAWPDHGVPEYPTPILAFLRRVKACN 205
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 10/239 (4%)
Query: 317 KRNPMVETSGTVVHLKQPF------NATRITVSNIHDRVTELQKENSSKAGFWEEFESLQ 370
+RN MV+T V + + T + N++ + +L + ++ E E
Sbjct: 254 QRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKL 313
Query: 371 QQESRHLFTRREGQKLD-NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSED 429
S+ +R L N+ KNR NI+P++ TRV L+ + V G++YINA+++
Sbjct: 314 LASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPI-RGVEGSDYINASFLDGYR 372
Query: 430 GGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGA 489
K+YIATQG L + DFW M+W+ N +IVM TK E G+ KC +YWP + ++ Y
Sbjct: 373 QQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSAR-YQY 431
Query: 490 VCVNNMYESVTTDYILREFLVSKGSES-PRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
V+ M E YILREF V+ + R I + F WP+ GVP ++F+ +V
Sbjct: 432 FVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQV 490
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 24/97 (24%)
Query: 101 DQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTN 160
+Q + GP+ VHCSAG+GRTG FI + ++L++++ G+ +D+ +T++ L+
Sbjct: 495 EQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGV---VDMFQTVK----TLR---- 543
Query: 161 SSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYI 197
T +P MVQTE QY+ Y A Y+
Sbjct: 544 --------TQRP-----AMVQTEDQYQLCYRAALEYL 567
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 74 ISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
+ AGP+VVHCSAG+GRTG FIVID +L+++K V ++
Sbjct: 207 LDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIY 245
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GP+VVHCSAG+GRTG FIVID +L+++K
Sbjct: 210 GPMVVHCSAGVGRTGCFIVIDAMLERMK 237
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+ VHCSAG+GRTG FI + ++L++++ G V
Sbjct: 501 GPITVHCSAGVGRTGVFITLSIVLERMRYEGVV 533
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 16/238 (6%)
Query: 331 LKQPFNATRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRN 390
L P + I V + EL N + GF E+FE +Q+ + T +N++
Sbjct: 2 LPIPDDMEAIPVKQFVKHIGELYSNN--QHGFSEDFEEVQRCTADMNITAEHSNHPENKH 59
Query: 391 KNRYKNILPFDHTRVKLKDV-DEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFW 449
KNRY NIL +DH+RVKL+ + +D ++YINANY+ + K+YIATQG L ST DFW
Sbjct: 60 KNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFW 119
Query: 450 SMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 509
M+W++N +IVM T +E+G+ KC +YWP ++ S+ YG + V + Y +R F
Sbjct: 120 RMIWEQNTGIIVMITNLVEKGRRKCDQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRRFS 178
Query: 510 V------------SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYES 555
+ KG ++ R + YH+ WPD GVP VL F+ M E+
Sbjct: 179 IRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPET 236
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVV 111
GPV+VHCSAG+GRTGT+IVID +L QIK V V
Sbjct: 236 TGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNV 271
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GPV+VHCSAG+GRTGT+IVID +L QIK
Sbjct: 237 GPVLVHCSAGVGRTGTYIVIDSMLQQIK 264
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 120/213 (56%), Gaps = 14/213 (6%)
Query: 356 NSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDV-DEDV 414
++++ GF E+FE +Q+ + T +N++KNRY NIL +DH+RVKL+ + +D
Sbjct: 24 SNNQHGFSEDFEEVQRSTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 83
Query: 415 PGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKC 474
++YINANY+ + K+YIATQG L ST DFW M+W++N +IVM T +E+G+ KC
Sbjct: 84 KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKC 143
Query: 475 AKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS------------KGSESPRKIYH 522
+YWP ++ ++ YG + V + Y +R F + KG ++ R +
Sbjct: 144 DQYWPTEN-TEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQ 202
Query: 523 YHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYES 555
YH+ WPD GVP VL F+ M E+
Sbjct: 203 YHYTQWPDMGVPEYALPVLTFVRRSSAARMPET 235
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVV 111
GPV+VHCSAG+GRTGT+IVID +L QIK V V
Sbjct: 235 TGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNV 270
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GPV+VHCSAG+GRTGT+IVID +L QIK
Sbjct: 236 GPVLVHCSAGVGRTGTYIVIDSMLQQIK 263
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 8/197 (4%)
Query: 353 QKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDE 412
+++ S GF EE+E L+ + + +NR KNRY N+LP+D +RVKL
Sbjct: 37 KQQADSNCGFAEEYEDLKLVGISQ--PKYAAELAENRGKNRYNNVLPYDISRVKLSVQTH 94
Query: 413 DVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKN 472
+YINANY+ K +IATQG LP+T+ DFW MVW++NV I+M TK +E+G+
Sbjct: 95 ST--DDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQGRT 152
Query: 473 KCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--KGSESPRKIYHYHFQAWPD 530
KC +YWP Q++ YG + V E V ++ +R+F V + SES + +HF +WPD
Sbjct: 153 KCEEYWP-SKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSES-HPLRQFHFTSWPD 210
Query: 531 HGVPSDPGCVLNFLYEV 547
HGVP ++NF Y V
Sbjct: 211 HGVPDTTDLLINFRYLV 227
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 70 MKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
MK S P++VH SAG+GRTGTFI ID ++ QI+ V V+
Sbjct: 231 MKQSPPESPILVHSSAGVGRTGTFIAIDRLIYQIENENTVDVY 273
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 24/90 (26%)
Query: 100 LDQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPST 159
+ Q P++VH SAG+GRTGTFI ID ++ QI+
Sbjct: 231 MKQSPPESPILVHSSAGVGRTGTFIAIDRLIYQIENE----------------------- 267
Query: 160 NSSTSLFSITYKPYPNVSGMVQTEAQYKFV 189
++ ++ I Y + MVQTE QY F+
Sbjct: 268 -NTVDVYGIVYDLRMHRPLMVQTEDQYVFL 296
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I V+++ +T+++ + GF EE+ES + +S + +K +NR KNRY NI+
Sbjct: 2 IRVADLLQHITQMK--CAEGYGFKEEYESFFEGQSAPWDS---AKKDENRMKNRYGNIIA 56
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRV 459
+DH+RV+L+ ++ D ++YIN NYI YIATQG + T+ DFW MVW EN
Sbjct: 57 YDHSRVRLQTIEGDT-NSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTAS 115
Query: 460 IVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSK-GSESPR 518
I+M T +E G+ KC KYWPDD ++ Y + V + + +Y++R F V K G R
Sbjct: 116 IIMVTNLVEVGRVKCCKYWPDD--TEIYKDIKVTLIETELLAEYVIRTFAVEKRGVHEIR 173
Query: 519 KIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+I +HF WPDHGVP +L F+ +V
Sbjct: 174 EIRQFHFTGWPDHGVPYHATGLLGFVRQV 202
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 67 QTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
Q K SAGP+VVHCSAG GRTG FIVID++LD ++ G V ++
Sbjct: 201 QVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIY 246
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 24/87 (27%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAG GRTG FIVID++LD ++ G+ +DI ++ +L+
Sbjct: 211 GPLVVHCSAGAGRTGCFIVIDIMLDMAEREGV---VDIYNCVR----ELRSRR------- 256
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
MVQTE QY F++ A+
Sbjct: 257 ----------VNMVQTEEQYVFIHDAI 273
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 16/229 (6%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I V + EL N + GF E+FE +Q+ + T +N++KNRY NIL
Sbjct: 10 IPVKQFVKHIGELYSNN--QHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILA 67
Query: 400 FDHTRVKLKDV-DEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVR 458
+DH+RVKL+ + +D ++YINANY+ + K+YIATQG L ST DFW M+W++N
Sbjct: 68 YDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTG 127
Query: 459 VIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS------- 511
+IVM T +E+G+ KC +YWP ++ S+ YG + V + Y +R F +
Sbjct: 128 IIVMITNLVEKGRRKCDQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKG 186
Query: 512 -----KGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYES 555
KG ++ R + YH+ WPD GVP VL F+ M E+
Sbjct: 187 QKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPET 235
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVV 111
GPV+VHCSAG+GRTGT+IVID +L QIK V V
Sbjct: 235 TGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNV 270
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GPV+VHCSAG+GRTGT+IVID +L QIK
Sbjct: 236 GPVLVHCSAGVGRTGTYIVIDSMLQQIK 263
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 120/213 (56%), Gaps = 14/213 (6%)
Query: 356 NSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDV-DEDV 414
++++ GF E+FE +Q+ + T +N++KNRY NIL +DH+RVKL+ + +D
Sbjct: 35 SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 94
Query: 415 PGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKC 474
++YINANY+ + K+YIATQG L ST DFW M+W++N +IVM T +E+G+ KC
Sbjct: 95 KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKC 154
Query: 475 AKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS------------KGSESPRKIYH 522
+YWP ++ S+ YG + V + Y +R F + KG ++ R +
Sbjct: 155 DQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQ 213
Query: 523 YHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYES 555
YH+ WPD GVP VL F+ M E+
Sbjct: 214 YHYTQWPDMGVPEYALPVLTFVRRSSAARMPET 246
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVV 111
GPV+VHCSAG+GRTGT+IVID +L QIK V V
Sbjct: 246 TGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNV 281
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GPV+VHCSAG+GRTGT+IVID +L QIK
Sbjct: 247 GPVLVHCSAGVGRTGTYIVIDSMLQQIK 274
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 16/229 (6%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I V + EL N + GF E+FE +Q+ + T +N++KNRY NIL
Sbjct: 3 IPVKQFVKHIGELYSNN--QHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILA 60
Query: 400 FDHTRVKLKDV-DEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVR 458
+DH+RVKL+ + +D ++YINANY+ + K+YIATQG L ST DFW M+W++N
Sbjct: 61 YDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTG 120
Query: 459 VIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLV-------- 510
+IVM T +E+G+ KC +YWP ++ S+ YG + V + Y +R F +
Sbjct: 121 IIVMITNLVEKGRRKCDQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKG 179
Query: 511 ----SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYES 555
KG ++ R + YH+ WPD GVP VL F+ M E+
Sbjct: 180 QKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPET 228
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 383 GQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLP 442
QK N+ KNR +++P + RV L + + G +YINA+YI +I TQ LP
Sbjct: 345 AQKECNKEKNRNSSVVPSERARVGLAPL-PGMKGTDYINASYIMGYYRSNEFIITQHPLP 403
Query: 443 STMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGA----------VCV 492
T DFW M+W N ++IVM +++ YWP +S A +C+
Sbjct: 404 HTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFV-YWPSREESMNCEAFTVTLISKDRLCL 462
Query: 493 NNMYESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVP 534
+N + + D+IL + + ++ H+ WP+ P
Sbjct: 463 SNEEQIIIHDFILE----ATQDDYVLEVRHFQCPKWPNPDAP 500
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKH 136
GPV+VHCSAG+GRTGT+IVID +L QIK V V RT ++ I H
Sbjct: 229 GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH 288
Query: 137 GLDCEIDIQRTIQHAWFKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHY 196
E + + + + +L NS P V G + E Q+K V Y
Sbjct: 289 DALLEAILGKETEVSSNQLHSYVNSIL---------IPGVGGKTRLEKQFKLVTQCNAKY 339
Query: 197 IQTLSQR 203
++ S +
Sbjct: 340 VECFSAQ 346
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 349 VTELQKENSSKAGFWEEFESLQQQESRH----LFTRREGQKLDNRNKNRYKNILPFDHTR 404
+ E Q + +K F EF L++Q +++ + +K N KNRYK+ILP+D++R
Sbjct: 30 LDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSR 89
Query: 405 VKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTT 464
V+L + D + YINAN+I+ G K+YIATQG L +T+ DFW M+W+ +V +IVM
Sbjct: 90 VELSLITSD-EDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMAC 148
Query: 465 KEMERGKNKCAKYWPDDHQSK-TYGAVCVNNMYESVTTDYILREFLVSKGSESPRKIYHY 523
E E GK KC +YW + + + +G V+ E +DYI+R V SE+ R IY +
Sbjct: 149 MEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSET-RTIYQF 207
Query: 524 HFQAWPDHGVPSDPGCVLNFLYEV 547
H++ WPDH VPS +L +++V
Sbjct: 208 HYKNWPDHDVPSSIDPILELIWDV 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 554 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 609
E +DYI+R V SE+ R IY +H++ WPDH VPS +L +++V Q+
Sbjct: 182 EKRKSDYIIRTLKVKFNSET-RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE 236
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPS-TNSSTSLF 166
P+ +H SAG GRTG ID + W LK + S+F
Sbjct: 241 PICIHSSAGCGRTGVICAID----------------------YTWMLLKDGIIPENFSVF 278
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
S+ + +VQT+ QY+ VY AV
Sbjct: 279 SLIREMRTQRPSLVQTQEQYELVYNAV 305
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 78 PVVVHCSAGIGRTGTFIVID 97
P+ +H SAG GRTG ID
Sbjct: 241 PICIHSSAGCGRTGVICAID 260
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 349 VTELQKENSSKAGFWEEFESLQQQESRH----LFTRREGQKLDNRNKNRYKNILPFDHTR 404
+ E Q + +K F EF L++Q +++ + +K N KNRYK+ILP+D++R
Sbjct: 30 LDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSR 89
Query: 405 VKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTT 464
V+L + D + YINAN+I+ G K+YIATQG L +T+ DFW M+W+ +V +IVM
Sbjct: 90 VELSLITSD-EDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMAC 148
Query: 465 KEMERGKNKCAKYWPDDHQSK-TYGAVCVNNMYESVTTDYILREFLVSKGSESPRKIYHY 523
E E GK KC +YW + + + +G V+ E +DYI+R V SE+ R IY +
Sbjct: 149 MEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSET-RTIYQF 207
Query: 524 HFQAWPDHGVPSDPGCVLNFLYEV 547
H++ WPDH VPS +L +++V
Sbjct: 208 HYKNWPDHDVPSSIDPILELIWDV 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 554 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 609
E +DYI+R V SE+ R IY +H++ WPDH VPS +L +++V Q+
Sbjct: 182 EKRKSDYIIRTLKVKFNSET-RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE 236
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 23/87 (26%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPS-TNSSTSLF 166
P+ +HCSAG GRTG ID + W LK + S+F
Sbjct: 241 PICIHCSAGCGRTGVICAID----------------------YTWMLLKDGIIPENFSVF 278
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
S+ + +VQT+ QY+ VY AV
Sbjct: 279 SLIREMRTQRPSLVQTQEQYELVYNAV 305
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 78 PVVVHCSAGIGRTGTFIVID 97
P+ +HCSAG GRTG ID
Sbjct: 241 PICIHCSAGCGRTGVICAID 260
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 349 VTELQKENSSKAGFWEEFESLQQQESRH----LFTRREGQKLDNRNKNRYKNILPFDHTR 404
+ E Q + +K F EF L++Q +++ + +K N KNRYK+ILP+D++R
Sbjct: 11 LDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSR 70
Query: 405 VKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTT 464
V+L + D + YINAN+I+ G K+YIATQG L +T+ DFW M+W+ +V +IVM
Sbjct: 71 VELSLITSD-EDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMAC 129
Query: 465 KEMERGKNKCAKYWPDDHQSK-TYGAVCVNNMYESVTTDYILREFLVSKGSESPRKIYHY 523
E E GK KC +YW + + + +G V+ E +DYI+R V SE+ R IY +
Sbjct: 130 MEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSET-RTIYQF 188
Query: 524 HFQAWPDHGVPSDPGCVLNFLYEV 547
H++ WPDH VPS +L +++V
Sbjct: 189 HYKNWPDHDVPSSIDPILELIWDV 212
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 554 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 609
E +DYI+R V SE+ R IY +H++ WPDH VPS +L +++V Q+
Sbjct: 163 EKRKSDYIIRTLKVKFNSET-RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 23/87 (26%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPS-TNSSTSLF 166
P+ +HCSAG GRTG ID + W LK + S+F
Sbjct: 222 PICIHCSAGCGRTGVICAID----------------------YTWMLLKDGIIPENFSVF 259
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
S+ + +VQT+ QY+ VY AV
Sbjct: 260 SLIREMRTQRPSLVQTQEQYELVYNAV 286
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 78 PVVVHCSAGIGRTGTFIVID 97
P+ +HCSAG GRTG ID
Sbjct: 222 PICIHCSAGCGRTGVICAID 241
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 349 VTELQKENSSKAGFWEEFESLQQQESRH----LFTRREGQKLDNRNKNRYKNILPFDHTR 404
+ E Q + +K F EF L++Q +++ + +K N KNRYK+ILP+D++R
Sbjct: 11 LDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSR 70
Query: 405 VKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTT 464
V+L + D + YINAN+I+ G K+YIATQG L +T+ DFW M+W+ +V +IVM
Sbjct: 71 VELSLITSD-EDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMAC 129
Query: 465 KEMERGKNKCAKYWPDDHQSK-TYGAVCVNNMYESVTTDYILREFLVSKGSESPRKIYHY 523
E E GK KC +YW + + + +G V+ E +DYI+R V SE+ R IY +
Sbjct: 130 MEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSET-RTIYQF 188
Query: 524 HFQAWPDHGVPSDPGCVLNFLYEV 547
H++ WPDH VPS +L +++V
Sbjct: 189 HYKNWPDHDVPSSIDPILELIWDV 212
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 554 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 609
E +DYI+R V SE+ R IY +H++ WPDH VPS +L +++V Q+
Sbjct: 163 EKRKSDYIIRTLKVKFNSET-RTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQE 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 23/87 (26%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPS-TNSSTSLF 166
P+ +HCSAG GRTG ID + W LK + S+F
Sbjct: 222 PICIHCSAGCGRTGVICAID----------------------YTWMLLKDGIIPENFSVF 259
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
S+ + +VQT+ QY+ VY AV
Sbjct: 260 SLIREMRTQRPSLVQTQEQYELVYNAV 286
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 78 PVVVHCSAGIGRTGTFIVID 97
P+ +HCSAG GRTG ID
Sbjct: 222 PICIHCSAGCGRTGVICAID 241
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 117/213 (54%), Gaps = 8/213 (3%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I + + D + L+ ++ K F +E+ES+ + FT N+ KNRY N++
Sbjct: 9 IPILELADHIERLKANDNLK--FSQEYESIDPGQQ---FTWEHSNLEVNKPKNRYANVIA 63
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRV 459
+DH+RV L + E +PG++Y+NANYI +YIATQG LP T DFW M+W++
Sbjct: 64 YDHSRVLLSAI-EGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSAT 122
Query: 460 IVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSK-GSESPR 518
+VM TK ER + KC +YWP ++T+G V V + Y +R F + K GS R
Sbjct: 123 VVMMTKLEERSRVKCDQYWP-SRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKR 181
Query: 519 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNN 551
++ + F AWPDHGVP P L FL V N
Sbjct: 182 EVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCN 214
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRT 120
AGP+VVHCSAG+GRTG FIVID +L++IK V ++ + R
Sbjct: 218 AGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRA 262
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GP+VVHCSAG+GRTG FIVID +L++IK
Sbjct: 219 GPMVVHCSAGVGRTGCFIVIDAMLERIK 246
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 120/213 (56%), Gaps = 14/213 (6%)
Query: 356 NSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDV-DEDV 414
++++ GF E+FE +Q+ + T +N++KNRY NIL +DH+RVKL+ + +D
Sbjct: 24 SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 83
Query: 415 PGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKC 474
++YINANY+ + K+YIATQG L ST DFW M+W++N +I+M T +E+G+ KC
Sbjct: 84 KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKC 143
Query: 475 AKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS------------KGSESPRKIYH 522
+YWP ++ ++ YG + V + Y +R F + KG ++ R +
Sbjct: 144 DQYWPTEN-TEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQ 202
Query: 523 YHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYES 555
YH+ WPD GVP VL F+ M E+
Sbjct: 203 YHYTQWPDMGVPEYALPVLTFVRRSSAARMPET 235
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVV 111
GPV+VHCSAG+GRTGT+IVID +L QIK V V
Sbjct: 235 TGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNV 270
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GPV+VHCSAG+GRTGT+IVID +L QIK
Sbjct: 236 GPVLVHCSAGVGRTGTYIVIDSMLQQIK 263
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 120/204 (58%), Gaps = 7/204 (3%)
Query: 349 VTELQKENSSKAGFWEEFESLQQQESRH----LFTRREGQKLDNRNKNRYKNILPFDHTR 404
+ E Q + +K F EF L++Q +++ + +K N KNRYK+ILP+D++R
Sbjct: 11 LDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSR 70
Query: 405 VKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTT 464
V+L + D + YINAN+I+ G K+YIATQG L +T+ DFW M+W+ +V +IVM
Sbjct: 71 VELSLITSD-EDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMAC 129
Query: 465 KEMERGKNKCAKYWPDDHQSK-TYGAVCVNNMYESVTTDYILREFLVSKGSESPRKIYHY 523
E E GK KC +YW + + + +G V+ E +DYI+R V SE+ R IY +
Sbjct: 130 MEYEMGKKKCERYWAEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSET-RTIYQF 188
Query: 524 HFQAWPDHGVPSDPGCVLNFLYEV 547
H++ WP H VPS +L +++V
Sbjct: 189 HYKNWPAHDVPSSIDPILELIWDV 212
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 554 ESVTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQD 609
E +DYI+R V SE+ R IY +H++ WP H VPS +L +++V Q+
Sbjct: 163 EKRKSDYIIRTLKVKFNSET-RTIYQFHYKNWPAHDVPSSIDPILELIWDVRCYQE 217
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPS-TNSSTSLF 166
P+ +H SAG GRTG ID + W LK + S+F
Sbjct: 222 PICIHSSAGCGRTGVICAID----------------------YTWMLLKDGIIPENFSVF 259
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
S+ + +VQT+ QY+ VY AV
Sbjct: 260 SLIREMRTQRPSLVQTQEQYELVYNAV 286
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 78 PVVVHCSAGIGRTGTFIVID 97
P+ +H SAG GRTG ID
Sbjct: 222 PICIHSSAGCGRTGVICAID 241
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + T Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHSSAGIGRSGTFCLADTCL 232
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + T Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHSSAGIGRSGTFCLADTCL 232
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + T Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 116/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY N+ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + T Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTS 164
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ +
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVL---------------- 250
Query: 165 LFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ + + ++QT Q +F YLAV
Sbjct: 251 ---LDMRKFR--CQLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + T Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 115/197 (58%), Gaps = 8/197 (4%)
Query: 353 QKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDE 412
+++ S GF EE+E L+ + + +NR KNRY N+LP+D +RVKL
Sbjct: 37 KQQADSNCGFAEEYEDLKLVGISQ--PKYAAELAENRGKNRYNNVLPYDISRVKLSVQTH 94
Query: 413 DVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKN 472
+YINANY+ K +IATQG LP+T+ DFW MVW++NV I+M TK +E+G+
Sbjct: 95 ST--DDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTKCVEQGRT 152
Query: 473 KCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVS--KGSESPRKIYHYHFQAWPD 530
KC +YWP Q++ YG + V E V ++ +R+F V + SES + +HF + PD
Sbjct: 153 KCEEYWP-SKQAQDYGDITVAMTSEIVLPEWTIRDFTVKNIQTSES-HPLRQFHFTSAPD 210
Query: 531 HGVPSDPGCVLNFLYEV 547
HGVP ++NF Y V
Sbjct: 211 HGVPDTTDLLINFRYLV 227
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 70 MKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
MK S P++VHCSAG+GRTGTFI ID ++ QI+ V V+
Sbjct: 231 MKQSPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVY 273
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 24/90 (26%)
Query: 100 LDQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPST 159
+ Q P++VHCSAG+GRTGTFI ID ++ QI+
Sbjct: 231 MKQSPPESPILVHCSAGVGRTGTFIAIDRLIYQIENE----------------------- 267
Query: 160 NSSTSLFSITYKPYPNVSGMVQTEAQYKFV 189
++ ++ I Y + MVQTE QY F+
Sbjct: 268 -NTVDVYGIVYDLRMHRPLMVQTEDQYVFL 296
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 116/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY N+ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + T Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 16/227 (7%)
Query: 331 LKQPFNATRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRN 390
L P + I V + EL N + GF E+FE +Q+ + T +N++
Sbjct: 2 LPIPDDXEAIPVKQFVKHIGELYSNN--QHGFSEDFEEVQRCTADXNITAEHSNHPENKH 59
Query: 391 KNRYKNILPFDHTRVKLKDV-DEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFW 449
KNRY NIL +DH+RVKL+ + +D ++YINANY+ + K+YIATQG L ST DFW
Sbjct: 60 KNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFW 119
Query: 450 SMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 509
+W++N +IV T +E+G+ KC +YWP ++ S+ YG + V + Y +R F
Sbjct: 120 RXIWEQNTGIIVXITNLVEKGRRKCDQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRRFS 178
Query: 510 V------------SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFL 544
+ KG ++ R + YH+ WPD GVP VL F+
Sbjct: 179 IRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDXGVPEYALPVLTFV 225
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 27/36 (75%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVV 111
GPV+VHCSAG+GRTGT+IVID L QIK V V
Sbjct: 236 TGPVLVHCSAGVGRTGTYIVIDSXLQQIKDKSTVNV 271
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GPV+VHCSAG+GRTGT+IVID L QIK
Sbjct: 237 GPVLVHCSAGVGRTGTYIVIDSXLQQIK 264
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 38 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 95
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 96 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 150
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 151 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 210
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 211 TTWPDFGVPESPASFLNFLFKV 232
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 241 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 292
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 293 --------------GLIQTADQLRFSYLAV 308
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 243 GPVVVHCSAGIGRSGTFCLADTCL 266
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH +AGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHAAAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH +AGIGR+GTF + D L
Sbjct: 209 GPVVVHAAAGIGRSGTFCLADTCL 232
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHASAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHASAGIGRSGTFCLADTCL 232
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I ++++ + + L+ +S K +E+ES+ + FT N+ KNRY N++
Sbjct: 14 IPITDMAEHMERLKANDSLKLS--QEYESIDPGQQ---FTWEHSNLEANKPKNRYANVIA 68
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRV 459
+DH+RV L+ + E + G++YINANY+ +YIATQG LP T DFW MVW++
Sbjct: 69 YDHSRVILQPL-EGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSAT 127
Query: 460 IVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSK-GSESPR 518
+VM T+ E+ + KC +YWP + ++TYG + V + + +R F + K GS R
Sbjct: 128 VVMMTRLEEKSRIKCDQYWP-NRGTETYGFIQVTLLDTMELATFCVRTFSLHKNGSSEKR 186
Query: 519 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNN 551
++ H+ F AWPDHGVP P L FL V N
Sbjct: 187 EVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCN 219
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 447
N+ KNR NILP++ +RV L+ + V G++YINA++I K+YIATQG L T D
Sbjct: 346 NKFKNRLVNILPYESSRVCLQPI-RGVEGSDYINASFIDGYRQQKAYIATQGPLAETTED 404
Query: 448 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILRE 507
FW +W+ N ++VM TK E G+ KC +YWP + ++ Y V+ M E YILRE
Sbjct: 405 FWRALWENNSTIVVMLTKLREMGREKCHQYWPAERSAR-YQYFVVDPMAEYNMPQYILRE 463
Query: 508 FLVSKGSES-PRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
F V+ + R + + F WP+ G P ++F+ +V
Sbjct: 464 FKVTDARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFIGQV 504
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 24/97 (24%)
Query: 101 DQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTN 160
+Q + GP+ VHCSAG+GRTG FI + ++L++++ G+ +DI +T++
Sbjct: 509 EQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGV---VDIFQTVK----------- 554
Query: 161 SSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYI 197
T +P MVQTE +Y+F + A Y+
Sbjct: 555 -----VLRTQRP-----AMVQTEDEYQFCFQAALEYL 581
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRT 120
AGP+VVHCSAG+GRTG FIVID +L++IK V V+ + R+
Sbjct: 223 AGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRS 267
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 24/87 (27%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAG+GRTG FIVID +L++IK T + ++
Sbjct: 224 GPIVVHCSAGVGRTGCFIVIDAMLERIK------------------------TEKTVDVY 259
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ MVQTE QY F++ A+
Sbjct: 260 GHVTLMRSQRNYMVQTEDQYGFIHEAL 286
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRT 120
GP+ VHCSAG+GRTG FI + ++L++++ G V + + + RT
Sbjct: 515 GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRT 558
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHSSAGIGRSGTFCLADTCL 232
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHSSAGIGRSGTFCLADTCL 232
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTAEQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 10 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 67
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 68 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 122
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 123 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 182
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 183 TTWPDFGVPESPASFLNFLFKV 204
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 213 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 264
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 265 --------------GLIQTADQLRFSYLAV 280
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 215 GPVVVHCSAGIGRSGTFCLADTCL 238
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHXSAGIGRSGTFCLADTCL 232
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 6 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 63
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 64 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 118
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 119 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 178
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 179 TTWPDFGVPESPASFLNFLFKV 200
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 209 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 260
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 261 --------------GLIQTADQLRFSYLAV 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 211 GPVVVHCSAGIGRSGTFCLADTCL 234
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 10 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 67
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 68 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 122
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 123 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 182
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 183 TTWPDFGVPESPASFLNFLFKV 204
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 213 EHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 264
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 265 --------------GLIQTADQLRFSYLAV 280
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 215 GPVVVHXSAGIGRSGTFCLADTCL 238
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTAEQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 10 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 67
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 68 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 122
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 123 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 182
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 183 TTWPDFGVPESPASFLNFLFKV 204
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 213 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 264
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 265 --------------GLIQTADQLRFSYLAV 280
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 215 GPVVVHCSAGIGRSGTFCLADTCL 238
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 3 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 60
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 61 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 115
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 116 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 175
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 176 TTWPDFGVPESPASFLNFLFKV 197
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 206 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 257
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 258 --------------GLIQTADQLRFSYLAV 273
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 208 GPVVVHCSAGIGRSGTFCLADTCL 231
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 19 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 72
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 73 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQY 131
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 132 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 191
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 192 PESPASFLNFLFKV 205
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 214 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 265
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 266 --------------GLIQTADQLRFSYLAV 281
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 216 GPVVVHCSAGIGRSGTFCLADTCL 239
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY ++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPSRVAKLPKNKNRNRYCDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T+ FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 177 TTWPDFGVPESPASFLNFLFKV 198
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRT-IQHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + F++
Sbjct: 207 EHGPVVVHXSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLDMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++ T Q +F YLAV
Sbjct: 259 --------------GLIATAEQLRFSYLAV 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 209 GPVVVHXSAGIGRSGTFCLADTCL 232
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 16 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 69
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 70 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQY 128
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 129 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 188
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 189 PESPASFLNFLFKV 202
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 211 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 262
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 263 --------------GLIQTADQLRFSYLAV 278
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 213 GPVVVHCSAGIGRSGTFCLADTCL 236
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 24 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 77
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 78 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQY 136
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 137 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 196
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 197 PESPASFLNFLFKV 210
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 219 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 270
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 271 --------------GLIQTADQLRFSYLAV 286
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 221 GPVVVHCSAGIGRSGTFCLADTCL 244
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 24 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 77
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 78 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQY 136
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 137 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 196
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 197 PESPASFLNFLFKV 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 219 EHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 270
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 271 --------------GLIQTADQLRFSYLAV 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 221 GPVVVHSSAGIGRSGTFCLADTCL 244
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 24 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 77
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 78 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSVKCAQY 136
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 137 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 196
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 197 PESPASFLNFLFKV 210
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 219 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 270
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 271 --------------GLIQTADQLRFSYLAV 286
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 221 GPVVVHCSAGIGRSGTFCLADTCL 244
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 24 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 77
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 78 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQY 136
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 137 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 196
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 197 PESPASFLNFLFKV 210
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 219 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 270
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 271 --------------GLIQTADQLRFSYLAV 286
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 221 GPVVVHCSAGIGRSGTFCLADTCL 244
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 359 KAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGA 417
K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL D D
Sbjct: 24 KSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDND---- 77
Query: 418 EYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKY 477
YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+G KCA+Y
Sbjct: 78 -YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQY 136
Query: 478 WPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGV 533
WP + + + + + E + + Y +R+ L + ++ R+I H+H+ WPD GV
Sbjct: 137 WPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGV 196
Query: 534 PSDPGCVLNFLYEV 547
P P LNFL++V
Sbjct: 197 PESPASFLNFLFKV 210
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVH SAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 219 EHGPVVVHDSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 270
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 271 --------------GLIQTADQLRFSYLAV 286
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVH SAGIGR+GTF + D L
Sbjct: 221 GPVVVHDSAGIGRSGTFCLADTCL 244
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 110/191 (57%), Gaps = 9/191 (4%)
Query: 362 FWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYIN 421
F EEF +L + T K +N+ KNRY NILP+DH+RV L V E VP ++YIN
Sbjct: 31 FREEFNALPACPIQA--TCEAASKEENKEKNRYVNILPYDHSRVHLTPV-EGVPDSDYIN 87
Query: 422 ANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDD 481
A++I +IA QG T+NDFW M+W++N IVM T ER + KCA+YWP D
Sbjct: 88 ASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWP-D 146
Query: 482 HQSKTYGAVCVNNMYESVTTDYILREFLVSK-GSESPRK----IYHYHFQAWPDHGVPSD 536
TYG V V+ +V DY +R+F + + G + RK I +HF +WPD GVP
Sbjct: 147 QGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFT 206
Query: 537 PGCVLNFLYEV 547
P +L FL +V
Sbjct: 207 PIGMLKFLKKV 217
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 25/92 (27%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
G +VVHCSAG+GRTGTF+VID +LD + + ++
Sbjct: 226 GAIVVHCSAGVGRTGTFVVIDAMLDMM------------------------HSERKVDVY 261
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLA-VQHYI 197
+ MVQT+ QY F+Y A ++HY+
Sbjct: 262 GFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL 293
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
AG +VVHCSAG+GRTGTF+VID +LD + V V+
Sbjct: 225 AGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVY 261
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 362 FWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYIN 421
F EEF SL + F K +NR KNRY NILP DH+RV L +D +P ++YIN
Sbjct: 30 FREEFNSLPSGHIQGTFEL--ANKEENREKNRYPNILPNDHSRVILSQLD-GIPCSDYIN 86
Query: 422 ANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDD 481
A+YI +IA QG T+NDFW MVW++ IVM T ER + KC +YWP D
Sbjct: 87 ASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWP-D 145
Query: 482 HQSKTYG--AVCVNNMYESVTTDYILREFLVS----KGSESPRKIYHYHFQAWPDHGVPS 535
TYG VCV + V DY +R+F + G ++PR + HF +WPD GVP
Sbjct: 146 QGCWTYGNIRVCVEDCV--VLVDYTIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPF 203
Query: 536 DPGCVLNFLYEV 547
P +L FL +V
Sbjct: 204 TPIGMLKFLKKV 215
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 11/221 (4%)
Query: 335 FNATRITVSNIHDRVTELQKENS--SKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKN 392
+ T + VS++ + + + K G EEF L R G N K
Sbjct: 292 YGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKE-NMRTGNLPANMKKA 350
Query: 393 RYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMV 452
R I+P+D RV L + +YINA++I +IATQG L T+ DFW M+
Sbjct: 351 RVIQIIPYDFNRVIL-SMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMI 409
Query: 453 WQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLV-- 510
W+ IVM T+ ER ++KC +YWP + S T+G + + ++++ +R+FLV
Sbjct: 410 WEWKSHTIVMLTEVQEREQDKCYQYWPTEG-SVTHGEITIEIKNDTLSEAISIRDFLVTL 468
Query: 511 ----SKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
++ E R + +HF WP+ G+P++ +++ + V
Sbjct: 469 NQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAV 509
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 24/90 (26%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAG+GRTGTFIVID ++ + HA +F
Sbjct: 224 GPIVVHCSAGVGRTGTFIVIDAMM----------------AMMHA--------EQKVDVF 259
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHY 196
+ MVQT+ QY F+Y A+ Y
Sbjct: 260 EFVSRIRNQRPQMVQTDMQYTFIYQALLEY 289
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 26/113 (23%)
Query: 91 GTFIVIDMILDQIKKHG--PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI 148
G +I + Q ++ G P+ VHCSAG GRTGTFI + IL+++K GL +D+ + +
Sbjct: 501 GMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGL---LDVFQAV 557
Query: 149 QHAWFKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLS 201
+ + +P+ MVQT QY+F Y VQ +I S
Sbjct: 558 KSLRLQ----------------RPH-----MVQTLEQYEFCYKVVQDFIDIFS 589
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 25/27 (92%)
Query: 74 ISAGPVVVHCSAGIGRTGTFIVIDMIL 100
+ AGP+VVHCSAG+GRTGTFIVID ++
Sbjct: 221 VHAGPIVVHCSAGVGRTGTFIVIDAMM 247
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 54 GLADLFLIYSPRDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHG 107
G+ DL + Q + P+ VHCSAG GRTGTFI + IL+++K G
Sbjct: 501 GMIDLIAAVQKQQQQTGNH-----PITVHCSAGAGRTGTFIALSNILERVKAEG 549
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 447
NR KNRY NILP+D +RV+L ++E+ G++YINANYI + + YIATQG LP T ND
Sbjct: 58 NRCKNRYTNILPYDFSRVRLVSMNEE-EGSDYINANYIPGYNSPQEYIATQGPLPETRND 116
Query: 448 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILRE 507
FW MV Q+ ++IVM T+ E+ + KC YWP YG + V + E TD++ R
Sbjct: 117 FWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEDPIAYGDITVEMLSEEEHTDWVYRN 176
Query: 508 FLVSKGSESPRKIYHYHFQAWPDHGVPS 535
F +S E + + H+++ AWPDHGVP+
Sbjct: 177 FRISYADEV-QDVMHFNYTAWPDHGVPT 203
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 24/102 (23%)
Query: 103 IKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSS 162
+K GP+++HCSAG+GRTGTFI +D +L I+ H +DI + S
Sbjct: 222 VKSKGPMIIHCSAGVGRTGTFIALDWLLQHIRDHEF---VDILGLV------------SD 266
Query: 163 TSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
+ ++ MVQTE QY F++ VQ Q Q+
Sbjct: 267 MRSYRMS---------MVQTEEQYIFIHQCVQLMWQKKKQQF 299
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 75 SAGPVVVHCSAGIGRTGTFIVIDMILDQIKKH 106
S GP+++HCSAG+GRTGTFI +D +L I+ H
Sbjct: 224 SKGPMIIHCSAGVGRTGTFIALDWLLQHIRDH 255
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 383 GQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLP 442
G + +N KNRYK++LP+D TRV L + E+ ++YIN N+I+ DG +YIATQG LP
Sbjct: 55 GSRPENVRKNRYKDVLPYDQTRVILSLLQEE-GHSDYINGNFIRGVDGSLAYIATQGPLP 113
Query: 443 STMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYES-VTT 501
T+ DFW +VW+ V+VI+M +E+E G+ +C +YW + + G C+ + E +
Sbjct: 114 HTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLNE 173
Query: 502 DYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
D +LR V+ ES R +Y + +WPD GVPS P +L + E
Sbjct: 174 DIMLRTLKVTFQKES-RSVYQLQYMSWPDRGVPSSPDHMLAMVEEA 218
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
P+ VHCSAG GRTG +D + + L SLF
Sbjct: 228 PLCVHCSAGCGRTGVLCTVDYVRQLL---------------------LTQMIPPDFSLFD 266
Query: 168 ITYKPYPNVSGMVQTEAQYKFVYLAV-QHYIQTL 200
+ K VQTE QY+F+Y V Q + TL
Sbjct: 267 VVLKMRKQRPAAVQTEEQYRFLYHTVAQMFCSTL 300
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 548 CVNNMYES-VTTDYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNT 606
C+ + E + D +LR V+ ES R +Y + +WPD GVPS P +L + E
Sbjct: 162 CITLIKEKWLNEDIMLRTLKVTFQKES-RSVYQLQYMSWPDRGVPSSPDHMLAMVEEARR 220
Query: 607 RQ 608
Q
Sbjct: 221 LQ 222
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 78 PVVVHCSAGIGRTGTFIVIDMI 99
P+ VHCSAG GRTG +D +
Sbjct: 228 PLCVHCSAGCGRTGVLCTVDYV 249
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 340 ITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILP 399
I ++++ + L+ +S K +E+ES+ + FT N+ KNRY N++
Sbjct: 12 IPIADMAEHTERLKANDSLKLS--QEYESIDPGQQ---FTWEHSNLEVNKPKNRYANVIA 66
Query: 400 FDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRV 459
+DH+RV L+ + E + G++YINANY+ +YIATQG LP T DFW MVW++
Sbjct: 67 YDHSRVILQPI-EGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSAT 125
Query: 460 IVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFLVSK-GSESPR 518
IVM T+ E+ + KC +YWP + ++TYG + V + + +R F + K GS R
Sbjct: 126 IVMMTRLEEKSRIKCDQYWP-NRGTETYGFIQVTLLDTIELATFCVRTFSLHKNGSSEKR 184
Query: 519 KIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNN 551
++ + F AWPDHGVP P L FL V N
Sbjct: 185 EVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCN 217
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 447
N+ KNR NI+P++ TRV L+ + V G++YINA++I K+YIATQG L T D
Sbjct: 344 NKFKNRLVNIMPYESTRVCLQPI-RGVEGSDYINASFIDGYRQQKAYIATQGPLAETTED 402
Query: 448 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILRE 507
FW M+W+ N ++VM TK E G+ KC +YWP + ++ Y V+ M E YILRE
Sbjct: 403 FWRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSAR-YQYFVVDPMAEYNMPQYILRE 461
Query: 508 FLVSKGSES-PRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
F V+ + R + + F WP+ GVP ++F+ +V
Sbjct: 462 FKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQV 502
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 24/106 (22%)
Query: 101 DQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTN 160
+Q + GP+ VHCSAG+GRTG FI + ++L++++ G+ +DI +T++
Sbjct: 507 EQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGV---VDIFQTVK----------- 552
Query: 161 SSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRLIE 206
T +P MVQTE +Y+F Y A Y+ + E
Sbjct: 553 -----MLRTQRP-----AMVQTEDEYQFCYQAALEYLGSFDHYATE 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRT 120
AGP+VVHCSAG+GRTG FIVID +L++IK V V+ + R+
Sbjct: 221 AGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRS 265
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIK 134
GP+VVHCSAG+GRTG FIVID +L++IK
Sbjct: 222 GPIVVHCSAGVGRTGCFIVIDAMLERIK 249
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRT 120
GP+ VHCSAG+GRTG FI + ++L++++ G V + + + RT
Sbjct: 513 GPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRT 556
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 8/182 (4%)
Query: 369 LQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSE 428
L+ + H + R + +NRN+NRY+++ P+DH+RVKL++ + D YINA+ + E
Sbjct: 23 LEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAEND-----YINASLVDIE 77
Query: 429 DGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYG 488
+ +SYI TQG LP+T FW MVWQ+ + +VM + +E+ KCA+YWP D Q +
Sbjct: 78 EAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFK 137
Query: 489 --AVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLY 545
V + E V + Y + L + S R I H+H+ WPD GVP P LNFL+
Sbjct: 138 ETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLF 197
Query: 546 EV 547
+V
Sbjct: 198 KV 199
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 24/88 (27%)
Query: 106 HGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSL 165
HGP V+HCSAGIGR+GTF ++D L ++K +I+I++ +
Sbjct: 209 HGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGD---DINIKQVL----------------- 248
Query: 166 FSITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ + Y G++QT Q +F Y+A+
Sbjct: 249 --LNMRKY--RMGLIQTPDQLRFSYMAI 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKK 105
GP V+HCSAGIGR+GTF ++D L ++K
Sbjct: 210 GPAVIHCSAGIGRSGTFSLVDTCLVLMEK 238
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 4 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 61
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 62 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 116
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G KCA+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 117 GSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 176
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
+PD GVP P LNFL++V
Sbjct: 177 TTFPDFGVPESPASFLNFLFKV 198
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 207 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 259 --------------GLIQTADQLRFSYLAV 274
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 209 GPVVVHCSAGIGRSGTFCLADTCL 232
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 447
NR KNRY NILP+D +RV+L ++E+ GA+YINANYI + + YIATQG LP T ND
Sbjct: 49 NRCKNRYTNILPYDFSRVRLVSMNEE-EGADYINANYIPGYNSPQEYIATQGPLPETRND 107
Query: 448 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILRE 507
FW MV Q+ ++IVM T+ E+ + KC YWP + YG + V + E D+ R
Sbjct: 108 FWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRH 167
Query: 508 FLVSKGSESPRKIYHYHFQAWPDHGVPSDPGC--VLNFLYEV 547
F ++ E + + H+++ AWPDHGVP+ +L F++ V
Sbjct: 168 FRINYADEM-QDVMHFNYTAWPDHGVPTANAAESILQFVHMV 208
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 24/91 (26%)
Query: 104 KKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSST 163
K GP+++HCSAG+GRTGTFI +D +L I+ H +DI + S
Sbjct: 214 KSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEF---VDILGLV------------SEM 258
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAVQ 194
+ ++ MVQTE QY F++ VQ
Sbjct: 259 RSYRMS---------MVQTEEQYIFIHQCVQ 280
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 75 SAGPVVVHCSAGIGRTGTFIVIDMILDQIKKH 106
S GP+++HCSAG+GRTGTFI +D +L I+ H
Sbjct: 215 SKGPMIIHCSAGVGRTGTFIALDRLLQHIRDH 246
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 4/162 (2%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 447
NR KNRY NILP+D +RV+L ++E+ GA+YINANYI + + YIATQG LP T ND
Sbjct: 51 NRCKNRYTNILPYDFSRVRLVSMNEE-EGADYINANYIPGYNSPQEYIATQGPLPETRND 109
Query: 448 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILRE 507
FW MV Q+ ++IVM T+ E+ + KC YWP + YG + V + E D+ R
Sbjct: 110 FWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRH 169
Query: 508 FLVSKGSESPRKIYHYHFQAWPDHGVPSDPGC--VLNFLYEV 547
F ++ E + + H+++ AWPDHGVP+ +L F++ V
Sbjct: 170 FRINYADEM-QDVMHFNYTAWPDHGVPTANAAESILQFVHMV 210
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 24/91 (26%)
Query: 104 KKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSST 163
K GP+++HCSAG+GRTGTFI +D +L I+ H +DI + S
Sbjct: 216 KSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEF---VDILGLV------------SEM 260
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAVQ 194
+ ++ MVQTE QY F++ VQ
Sbjct: 261 RSYRMS---------MVQTEEQYIFIHQCVQ 282
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 75 SAGPVVVHCSAGIGRTGTFIVIDMILDQIKKH 106
S GP+++HCSAG+GRTGTFI +D +L I+ H
Sbjct: 217 SKGPMIIHCSAGVGRTGTFIALDRLLQHIRDH 248
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 116/202 (57%), Gaps = 12/202 (5%)
Query: 351 ELQKENSSKAGFWEE-FESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKD 409
E + E K+G W ++ ++ + S F R + N+N+NRY+++ PFDH+R+KL
Sbjct: 10 EKEFEQIDKSGSWAAIYQDIRHEASD--FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ 67
Query: 410 VDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMER 469
D D YINA+ I+ E+ +SYI TQG LP+T FW MVW++ R +VM + ME+
Sbjct: 68 EDND-----YINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK 122
Query: 470 GKNKCAKYWPDDHQSKTY---GAVCVNNMYESVTTDYILREF-LVSKGSESPRKIYHYHF 525
G K A+YWP + + + + + E + + Y +R+ L + ++ R+I H+H+
Sbjct: 123 GSLKWAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHY 182
Query: 526 QAWPDHGVPSDPGCVLNFLYEV 547
WPD GVP P LNFL++V
Sbjct: 183 TTWPDFGVPESPASFLNFLFKV 204
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 23/90 (25%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI-QHAWFKLKPSTNSST 163
+HGPVVVHCSAGIGR+GTF + D L + K +DI++ + + F++
Sbjct: 213 EHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRM-------- 264
Query: 164 SLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
G++QT Q +F YLAV
Sbjct: 265 --------------GLIQTADQLRFSYLAV 280
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMIL 100
GPVVVHCSAGIGR+GTF + D L
Sbjct: 215 GPVVVHCSAGIGRSGTFCLADTCL 238
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 9/213 (4%)
Query: 341 TVSNIH-DRVTELQKENSSKAG--FWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNI 397
V IH D + E K + G F EF+S+ + S+ F +E +K N+NKNRY +I
Sbjct: 6 NVEPIHADILLETYKRKIADEGRPFLAEFQSIPRVFSK--FPIKEARKPFNQNKNRYVDI 63
Query: 398 LPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENV 457
LP+D+ RV+L +++ D G+ YINA+YI + YIA QG T++DFW +W++
Sbjct: 64 LPYDYNRVELSEINGDA-GSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRXIWEQKA 122
Query: 458 RVIVMTTKEMERGKNKCAKYWPDDHQ-SKTYGAVCVNNMYESVTTDYILREFLV--SKGS 514
VIV T+ E +NKCA+YWP + ++ +G V V DYI+++ + K
Sbjct: 123 TVIVXVTRCEEGNRNKCAEYWPSXEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEK 182
Query: 515 ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ R++ H F +WPDHGVP DP +L V
Sbjct: 183 ATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRV 215
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 335 FNATRITVSNIHDRVTELQKEN--SSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKN 392
F T + +S +H + +K + S + EF+ L R T+ G + +N++KN
Sbjct: 292 FGETEVNLSELHPYLHNXKKRDPPSEPSPLEAEFQRLPS--YRSWRTQHIGNQEENKSKN 349
Query: 393 RYKNILPFDHTRVKLKDVDE------------------DVPGAEYINANYIQSEDGGKSY 434
R N++P+D+ RV LK E ++YINA++I S +
Sbjct: 350 RNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFIXSYWKPEVX 409
Query: 435 IATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNN 494
IA QG L T+ DFW ++Q V+VIV T+ + CA+YW + Q TYG + V+
Sbjct: 410 IAAQGPLKETIGDFWQXIFQRKVKVIVXLTELKHGDQEICAQYWGEGKQ--TYGDIEVDL 467
Query: 495 MYESVTTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFL 544
++ Y LR F L + R +Y Y + W +P++P +++ +
Sbjct: 468 KDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPKELISXI 518
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 57 DLFLIYSPRDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVH 112
D L+ R + N + +GP+VVH SAG+GRTGT+I ID L+ ++ V V+
Sbjct: 204 DPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAXLEGLEAENKVDVY 259
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 559 DYILREFLVSKGSESP--RKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIHAG 613
DYI+++ + E R++ H F +WPDHGVP DP +L VN + +G
Sbjct: 168 DYIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSG 224
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 24/92 (26%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVH SAG+GRTGT+I ID L+ GL+ E + ++
Sbjct: 224 GPIVVHSSAGVGRTGTYIGIDAXLE-----GLEAE-------------------NKVDVY 259
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQ 198
K VQ EAQY ++ A+ Y Q
Sbjct: 260 GYVVKLRRQRCLXVQVEAQYILIHQALVEYNQ 291
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKS----YIATQGCLPS 443
N +KNRY++I P+D TRV LK +ED YINANYI E S YIA QG LP
Sbjct: 71 NISKNRYRDISPYDATRVILKG-NED-----YINANYINMEIPSSSIINQYIACQGPLPH 124
Query: 444 TMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDY 503
T DFW M W++ ++VM T ++ERG+ KC +YWP+ S +YG V E T Y
Sbjct: 125 TCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPTGSSSYGCYQVTCHSEEGNTAY 184
Query: 504 ILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
I R+ L ++ R + + AWPDHGVP D L+F+ V
Sbjct: 185 IFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHV 229
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 24/89 (26%)
Query: 105 KHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTS 164
K PVVVHCSAGIGRTG I ++ + I+ + +DI RT++
Sbjct: 236 KEEPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRD-------------- 281
Query: 165 LFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ M+QT +QY+FV A+
Sbjct: 282 ----------QRAMMIQTPSQYRFVCEAI 300
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 78 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
PVVVHCSAGIGRTG I ++ + I+ + PV
Sbjct: 239 PVVVHCSAGIGRTGVLITMETAMCLIECNQPV 270
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 7/160 (4%)
Query: 388 NRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMND 447
N +KNRYK++LP+D TRV L+ +ED A Y+N I + + YIATQG LP T
Sbjct: 44 NLDKNRYKDVLPYDTTRVLLQG-NEDYINASYVNME-IPAANLVNKYIATQGPLPHTCAQ 101
Query: 448 FWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILRE 507
FW +VW + + +IVM T ERG+ KC +YWPD +G + E T Y+ RE
Sbjct: 102 FWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPPDVMNHGGFHIQCQSEDCTIAYVSRE 161
Query: 508 FLVSK---GSESPRKIYHYHFQAWPDHGVPSDPGCVLNFL 544
LV+ G E + H + AWPDHGVP D L F+
Sbjct: 162 MLVTNTQTGEE--HTVTHLQYVAWPDHGVPDDSSDFLEFV 199
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 24/86 (27%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
PV+VHCSAGIGRTG + ++ + +++ +DI R ++
Sbjct: 211 PVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRD----------------- 253
Query: 168 ITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ MVQT +QYKFV A+
Sbjct: 254 -------QRAMMVQTSSQYKFVCEAI 272
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 74 ISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
+ + PV+VHCSAGIGRTG + ++ + +++ P+
Sbjct: 207 VDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPI 242
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 103/189 (54%), Gaps = 19/189 (10%)
Query: 364 EEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINAN 423
+E E+LQ E + L GQ +NR KNRYKNILP+D TRV L D YINA+
Sbjct: 53 KELENLQ--ELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLGD------EGGYINAS 104
Query: 424 YIQSEDGGKS--YIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDD 481
+I+ G + YIA QG LP+T+ DFW M+W++ VI M T+E+E K KC +YWP+
Sbjct: 105 FIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNI 164
Query: 482 HQSKTYGAVCVNNMYESVTTDYILREFLVSK------GSESPRKIYHYHFQAWPDHGVPS 535
T + N + ++ L+ F+V + R I H +F AWPDH PS
Sbjct: 165 LGKTT---MVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPS 221
Query: 536 DPGCVLNFL 544
P +L F+
Sbjct: 222 QPDDLLTFI 230
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 26/109 (23%)
Query: 100 LDQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPST 159
+ I + GP++ HCSAGIGR+GT I ID++L I + D + DI ++ +
Sbjct: 233 MRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQ---DLDFDISDLVRCMRLQRH--- 286
Query: 160 NSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRLIEEQ 208
GMVQTE QY F Y + + + L EEQ
Sbjct: 287 ------------------GMVQTEDQYIFCYQVILYVLTRLQAE--EEQ 315
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 70 MKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKK 105
M++ +GP++ HCSAGIGR+GT I ID++L I +
Sbjct: 233 MRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQ 268
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 575 RKIYHYHFQAWPDHGVPSDPGCVLNFL 601
R I H +F AWPDH PS P +L F+
Sbjct: 204 RHISHLNFTAWPDHDTPSQPDDLLTFI 230
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK+ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 69 SKDRYKDILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 127
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE V +IVM T ++ GK KC YWP + + TYG + +Y +R+
Sbjct: 128 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKECPEYTVRQL 184
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ E R + H F AWPDH P G +L + EV
Sbjct: 185 TIQYQEER-RSVKHILFSAWPDHQTPESAGPLLRLVAEV 222
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVH SAGIGRTG FI + Q+K G E+DI
Sbjct: 233 GPIVVHSSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 268
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 269 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 304
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVH SAGIGRTG FI + Q+K G V
Sbjct: 233 GPIVVHSSAGIGRTGCFIATRIGCQQLKARGEV 265
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 70 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 128
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE V +IVM T ++ GK KC YWP + + TYG + +Y +R+
Sbjct: 129 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKECPEYTVRQL 185
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ E R + H F AWPDH P G +L + EV
Sbjct: 186 TIQYQEER-RSVKHILFSAWPDHQTPESAGPLLRLVAEV 223
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVH SAGIGRTG FI + Q+K G E+DI
Sbjct: 234 GPIVVHSSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 270 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 305
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVH SAGIGRTG FI + Q+K G V
Sbjct: 234 GPIVVHSSAGIGRTGCFIATRIGCQQLKARGEV 266
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 70 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 128
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE V +IVM T ++ GK KC YWP + + TYG + +Y +R+
Sbjct: 129 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKECPEYTVRQL 185
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ E R + H F AWPDH P G +L + EV
Sbjct: 186 TIQYQEER-RSVKHILFSAWPDHQTPESAGPLLRLVAEV 223
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAGIGRTG FI + Q+K G E+DI
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 270 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 305
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVHCSAGIGRTG FI + Q+K G V
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARGEV 266
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 59 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 117
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE V +IVM T ++ GK KC YWP + + TYG + +Y +R+
Sbjct: 118 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKECPEYTVRQL 174
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ E R + H F AWPDH P G +L + EV
Sbjct: 175 TIQYQEER-RSVKHILFSAWPDHQTPESAGPLLRLVAEV 212
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAGIGRTG FI + Q+K G E+DI
Sbjct: 223 GPIVVHCSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 258
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 259 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 294
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVHCSAGIGRTG FI + Q+K G V
Sbjct: 223 GPIVVHCSAGIGRTGCFIATRIGCQQLKARGEV 255
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 69 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 127
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE V +IVM T ++ GK KC YWP + + TYG + +Y +R+
Sbjct: 128 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKECPEYTVRQL 184
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ E R + H F AWPDH P G +L + EV
Sbjct: 185 TIQYQEER-RSVKHILFSAWPDHQTPESAGPLLRLVAEV 222
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAGIGRTG FI + Q+K G E+DI
Sbjct: 233 GPIVVHCSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 268
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 269 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 304
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVHCSAGIGRTG FI + Q+K G V
Sbjct: 233 GPIVVHCSAGIGRTGCFIATRIGCQQLKARGEV 265
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 70 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 128
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE V +IVM T ++ GK KC YWP + + TYG + +Y +R+
Sbjct: 129 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKECPEYTVRQL 185
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ E R + H F AWPDH P G +L + EV
Sbjct: 186 TIQYQEER-RDVKHILFSAWPDHQTPESAGPLLRLVAEV 223
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAGIGRTG FI + Q+K G E+DI
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 270 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 305
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVHCSAGIGRTG FI + Q+K G V
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARGEV 266
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 391 KNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDFW 449
KNRYK ILP H+RV L D D P + YINANYI+ G K YIATQG + ST+ DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 450 SMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 509
MVWQE+ +IVM T +E KC +YWP++ + Y V + T DY LR
Sbjct: 127 RMVWQEHTPIIVMITN-IEEMNEKCTEYWPEEQVA--YDGVEITVQKVIHTEDYRLRLIS 183
Query: 510 VSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ G+E R + HY F +WPD P +L+ + EV
Sbjct: 184 LKSGTEE-RGLKHYWFTSWPDQKTPDRAPPLLHLVREV 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
P++VH SAGIGRTG FI + Q+++ G+ +DI +T
Sbjct: 232 APIIVHSSAGIGRTGCFIATSICCQQLRQEGV---VDILKT------------------- 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQR 203
T + + GM+QT QY+FV+ + Y + LS +
Sbjct: 270 --TCQLRQDRGGMIQTCEQYQFVHHVMSLYEKQLSHQ 304
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
P++VH SAGIGRTG FI + Q+++ G V
Sbjct: 231 CAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVV 264
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 391 KNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDFW 449
KNRYK ILP H+RV L D D P + YINANYI+ G K YIATQG + ST+ DFW
Sbjct: 46 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 105
Query: 450 SMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 509
MVWQE+ +IVM T +E KC +YWP++ + Y V + T DY LR
Sbjct: 106 RMVWQEHTPIIVMITN-IEEMNEKCTEYWPEEQVA--YDGVEITVQKVIHTEDYRLRLIS 162
Query: 510 VSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ G+E R + HY F +WPD P +L+ + EV
Sbjct: 163 LKSGTEE-RGLKHYWFTSWPDQKTPDRAPPLLHLVREV 199
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 24/95 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
P++VH SAGIGRTG FI + Q+++ G+ +DI +T
Sbjct: 211 APIIVHXSAGIGRTGCFIATSICCQQLRQEGV---VDILKT------------------- 248
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLS 201
T + + GM+QT QY+FV+ + Y + LS
Sbjct: 249 --TCQLRQDRGGMIQTCEQYQFVHHVMSLYEKQLS 281
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
P++VH SAGIGRTG FI + Q+++ G V
Sbjct: 210 CAPIIVHXSAGIGRTGCFIATSICCQQLRQEGVV 243
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 391 KNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDFW 449
KNRYK ILP H+RV L D D P + YINANYI+ G K YIATQG + ST+ DFW
Sbjct: 67 KNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFW 126
Query: 450 SMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 509
MVWQE+ +IVM T +E KC +YWP++ + Y V + T DY LR
Sbjct: 127 RMVWQEHTPIIVMITN-IEEMNEKCTEYWPEEQVA--YDGVEITVQKVIHTEDYRLRLIS 183
Query: 510 VSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ G+E R + HY F +WPD P +L+ + EV
Sbjct: 184 LKSGTEE-RGLKHYWFTSWPDQKTPDRAPPLLHLVREV 220
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 24/97 (24%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
P++VHCSAGIGRTG FI + Q+++ G+ +DI +T
Sbjct: 232 APIIVHCSAGIGRTGCFIATSICCQQLRQEGV---VDILKT------------------- 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQR 203
T + + GM+QT QY+FV+ + Y + LS +
Sbjct: 270 --TCQLRQDRGGMIQTCEQYQFVHHVMSLYEKQLSHQ 304
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 76 AGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
P++VHCSAGIGRTG FI + Q+++ G V
Sbjct: 231 CAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVV 264
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 70 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 128
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGA--VCVNNMYESVTTDYILR 506
W MVWQE V +IVM T ++ GK KC YWP + + TYG + + +M E +Y +R
Sbjct: 129 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKEC--PEYTVR 183
Query: 507 EFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ + E R + H F AWP H P G +L + EV
Sbjct: 184 QLTIQYQEER-RSVKHILFSAWPAHQTPESAGPLLRLVAEV 223
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVH SAGIGRTG FI + Q+K G E+DI
Sbjct: 234 GPIVVHSSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+ T QY+F++ + Y L +
Sbjct: 270 GIVCQLRLDRGGMIATAEQYQFLHHTLALYAGQLPE 305
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVH SAGIGRTG FI + Q+K G V
Sbjct: 234 GPIVVHSSAGIGRTGCFIATRIGCQQLKARGEV 266
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
+K+RYK ILP +RV L G +YINANYI+ DG K YIATQG +P+T++DF
Sbjct: 70 SKDRYKTILPNPQSRVCLGRAQSQEDG-DYINANYIRGYDGKEKVYIATQGPMPNTVSDF 128
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGA--VCVNNMYESVTTDYILR 506
W MVWQE V +IVM T ++ GK KC YWP + + TYG + + +M E +Y +R
Sbjct: 129 WEMVWQEEVSLIVMLT-QLREGKEKCVHYWPTEEE--TYGPFQIRIQDMKEC--PEYTVR 183
Query: 507 EFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ + E R + H F AWP H P G +L + EV
Sbjct: 184 QLTIQYQEER-RSVKHILFSAWPAHQTPESAGPLLRLVAEV 223
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GP+VVHCSAGIGRTG FI + Q+K G E+DI
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARG---EVDI---------------------L 269
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQ 202
I + + GM+QT QY+F++ + Y L +
Sbjct: 270 GIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 305
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV 109
GP+VVHCSAGIGRTG FI + Q+K G V
Sbjct: 234 GPIVVHCSAGIGRTGCFIATRIGCQQLKARGEV 266
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 22/222 (9%)
Query: 336 NATRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYK 395
+ATR+ + +R L+K+ F E+E + ++++ +F+ +N ++R +
Sbjct: 25 DATRVPMD---ERFRTLKKKLEEGMVF-TEYEQIPKKKANGIFS--TAALPENAERSRIR 78
Query: 396 NILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKS--YIATQGCLPSTMNDFWSMVW 453
++P++ RV+L E+ G YINA++I+ GG YIATQG LP T +DFW MVW
Sbjct: 79 EVVPYEENRVELIPTKENNTG--YINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVW 136
Query: 454 QENVRVIVMTTKEMERGKNKCAKYWP---DDHQSKTYGAVCVNNMYES-----VTTDYIL 505
++ V VI M T E E G+ K +YWP H S TYG V + + TT +
Sbjct: 137 EQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKV 196
Query: 506 REFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ L S R ++H + WPDHG P D L++L E+
Sbjct: 197 KHLL----SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEI 234
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 26/109 (23%)
Query: 97 DMILDQIKKHGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLK 156
M+ +H P+VVHCSAG+GRTG I+ ++++ + +H E+ + +
Sbjct: 243 SMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCL-EHNEKVEVPMMLRLLR------ 295
Query: 157 PSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRLI 205
+F M+QT AQYKFVY + ++Q + RLI
Sbjct: 296 -----EQRMF------------MIQTIAQYKFVYQVLIQFLQ--NSRLI 325
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 78 PVVVHCSAGIGRTGTFIVIDMIL 100
P+VVHCSAG+GRTG I+ ++++
Sbjct: 254 PIVVHCSAGVGRTGVLILSELMI 276
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 13/218 (5%)
Query: 329 VHLKQPFNATRITVSNIHDRVTELQKENSSKAGFWEEFESLQQQESRHLFTRREGQKLDN 388
VH+ P +T+ + D V QK+ G +EE+E ++++ F N
Sbjct: 3 VHVPGPHA---MTIQELVDYVNARQKQ-----GIYEEYEDIRRENPVGTF--HCSMSPGN 52
Query: 389 RNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGCLPSTMNDF 448
KNRY ++ D TRVKL +YINA+++ +YI TQG L +T DF
Sbjct: 53 LEKNRYGDVPCLDQTRVKLTKRSGHTQ-TDYINASFMDGYKQKNAYIGTQGPLENTYRDF 111
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKT-YGAVCVNNMYESVTTDYILRE 507
W MVW++ V VIVMTT+ E G+ KC +YWP + S+ +G + V N+ Y
Sbjct: 112 WLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTT 171
Query: 508 FLVSKGSE-SPRKIYHYHFQAWPDHGVPSDPGCVLNFL 544
+ E R++ H+ F +WPD+GVPS +++FL
Sbjct: 172 LEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFL 209
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 78 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRT 120
P+VVHCSAGIGRTGTF +D+ L Q+++ G + V + RT
Sbjct: 235 PIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRT 277
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 24/91 (26%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
P+VVHCSAGIGRTGTF +D+ L Q+++ G +++ +T+ S + FS
Sbjct: 235 PIVVHCSAGIGRTGTFCSLDICLAQLEELGT---LNVFQTV---------SRMRTQRAFS 282
Query: 168 ITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQ 198
I QT QY F Y A+ + +
Sbjct: 283 I------------QTPEQYYFCYKAILEFAE 301
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 575 RKIYHYHFQAWPDHGVPSDPGCVLNFLYEVNTRQDIHAGN 614
R++ H+ F +WPD+GVPS +++FL V +Q + N
Sbjct: 183 RQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSN 222
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 3/168 (1%)
Query: 381 REGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGGKSYIATQGC 440
R G N KNR I+P++ RV + V +Y+NA++I SYIA+QG
Sbjct: 2 RTGNLPANMKKNRVLQIIPYEFNRVIIP-VKRGEENTDYVNASFIDGYRQKDSYIASQGP 60
Query: 441 LPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVT 500
L T+ DFW M+W+ IVM T+ ERG+ KCA+YWP D +YG + V E
Sbjct: 61 LLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGLV-SYGDITVELKKEEEC 119
Query: 501 TDYILREFLVSKGSES-PRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
Y +R+ LV+ E+ R+I +HF WP+ G+PSD ++N + V
Sbjct: 120 ESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAV 167
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 26/113 (23%)
Query: 91 GTFIVIDMILDQIKKHG--PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTI 148
G +I + Q ++ G P+ VHCSAG GRTGTF + +L+++K G+ +D+ +T+
Sbjct: 159 GMINIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGI---LDVFQTV 215
Query: 149 QHAWFKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLS 201
+ +L+ +P+ MVQT QY+F Y VQ YI S
Sbjct: 216 KS--LRLQ--------------RPH-----MVQTLEQYEFCYKVVQEYIDAFS 247
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 78 PVVVHCSAGIGRTGTFIVIDMILDQIKKHG 107
P+ VHCSAG GRTGTF + +L+++K G
Sbjct: 178 PITVHCSAGAGRTGTFCALSTVLERVKAEG 207
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 9/191 (4%)
Query: 360 AGFWEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEY 419
A W+ + Q + + + EG N KNR+ + LP+DH R+KLK V+ ++Y
Sbjct: 32 AKEWQALCAYQAEPNTCATAQGEG----NIKKNRHPDFLPYDHARIKLK-VESSPSRSDY 86
Query: 420 INANYIQSEDGG-KSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYW 478
INA+ I D +YIATQG L T+ DFW MVW+ VIVM T +E G +C +YW
Sbjct: 87 INASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYW 146
Query: 479 PDDHQSKTYGAVCVNNMYESV-TTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSD 536
PD+ S Y VN + E + D+++R F L + ++ R + +HF +WP G P+
Sbjct: 147 PDEGAS-LYHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQETRTLTQFHFLSWPAEGTPAS 205
Query: 537 PGCVLNFLYEV 547
+L+F +V
Sbjct: 206 TRPLLDFRRKV 216
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 23/97 (23%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
P++VHCS G GRTGT+I+IDM+L+++ K G+ EIDI T++H + +P
Sbjct: 226 PIIVHCSDGAGRTGTYILIDMVLNRMAK-GVK-EIDIAATLEHVRDQ-RP---------- 272
Query: 168 ITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLSQRL 204
G+V+++ Q++F AV + + + L
Sbjct: 273 ----------GLVRSKDQFEFALTAVAEEVNAILKAL 299
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 65 RDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKK 105
R + N Y + P++VHCS G GRTGT+I+IDM+L+++ K
Sbjct: 213 RRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAK 253
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Query: 390 NKNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDF 448
KNRYK ILP +RV L+ + + YINANYI+ G K++IATQG + +T+NDF
Sbjct: 58 TKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGPMINTVNDF 117
Query: 449 WSMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREF 508
W MVWQE+ VIVM TK E+ + KC YWP+ + YG V V + +Y +R
Sbjct: 118 WQMVWQEDSPVIVMITKLKEKNE-KCVLYWPE--KRGIYGKVEVLVTGVTECDNYTIRNL 174
Query: 509 LVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
++ +GS + + + HY + +WPDH P +L + +V
Sbjct: 175 VLKQGSHT-QHVKHYWYTSWPDHKTPDSAQPLLQLMLDV 212
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 26/110 (23%)
Query: 94 IVIDMILDQIKK--HGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHA 151
+++D+ D++ GPVVVHCSAGIGRTG FI + Q+K+ G+
Sbjct: 208 LMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGV------------- 254
Query: 152 WFKLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLS 201
SI + + GMVQT QY+FV+ A+ + LS
Sbjct: 255 -----------VDALSIVCQLRVDRGGMVQTSEQYEFVHHALCLFESRLS 293
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV---VVHCSAGIGRTG 121
GPVVVHCSAGIGRTG FI + Q+K+ G V + C + R G
Sbjct: 223 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGG 270
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 9/188 (4%)
Query: 363 WEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINA 422
WE + Q + + +RE +N KNR +L +DH+RV LK + ++YINA
Sbjct: 36 WEALCAYQAEPNSSFVAQRE----ENVPKNRSLAVLTYDHSRVLLK-AENSHSHSDYINA 90
Query: 423 NYIQSEDG-GKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPDD 481
+ I D +YIATQG LP+T+ DFW MVW+ VIVM T E G +C YWPD+
Sbjct: 91 SPIMDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDE 150
Query: 482 HQSKTYGAVCVNNMYESV-TTDYILREF-LVSKGSESPRKIYHYHFQAWPDHGVPSDPGC 539
S Y VN + E + D+++R F L + + R + +HF +W D GVPS
Sbjct: 151 -GSNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRS 209
Query: 540 VLNFLYEV 547
+L+F +V
Sbjct: 210 LLDFRRKV 217
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 23/93 (24%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
P++VHCS G GR+GT+++IDM+L+++ K EIDI T++H L+
Sbjct: 227 PIIVHCSDGAGRSGTYVLIDMVLNKMAKGAK--EIDIAATLEH----LRDQ--------- 271
Query: 168 ITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTL 200
+P GMVQT+ Q++F AV + +
Sbjct: 272 ---RP-----GMVQTKEQFEFALTAVAEEVNAI 296
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 65 RDQTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKK 105
R + N Y + P++VHCS G GR+GT+++IDM+L+++ K
Sbjct: 214 RRKVNKCYRGRSCPIIVHCSDGAGRSGTYVLIDMVLNKMAK 254
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 391 KNRYKNILPFDHTRVKLKDVDEDVPGAEYINANYIQSEDGG-KSYIATQGCLPSTMNDFW 449
KNRYK ILP +RV L+ + + YINANYI+ G K++IATQG + +T++DFW
Sbjct: 46 KNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFW 105
Query: 450 SMVWQENVRVIVMTTKEMERGKNKCAKYWPDDHQSKTYGAVCVNNMYESVTTDYILREFL 509
MVWQE+ VIVM TK E+ + KC YWP+ + YG V V + + +Y +R +
Sbjct: 106 QMVWQEDSPVIVMITKLKEKNE-KCVLYWPE--KRGIYGKVEVLVISVNECDNYTIRNLV 162
Query: 510 VSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 547
+ +GS + + + HY + +WPDH P +L + +V
Sbjct: 163 LKQGSHT-QHVKHYWYTSWPDHKTPDSAQPLLQLMLDV 199
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 107 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLF 166
GPVVVHCSAGIGRTG FI + Q+K+ G+
Sbjct: 210 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGV------------------------VDAL 245
Query: 167 SITYKPYPNVSGMVQTEAQYKFVYLAVQHYIQTLS 201
SI + + GMVQT QY+FV+ A+ Y LS
Sbjct: 246 SIVCQLRMDRGGMVQTSEQYEFVHHALCLYESRLS 280
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 77 GPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPV---VVHCSAGIGRTG 121
GPVVVHCSAGIGRTG FI + Q+K+ G V + C + R G
Sbjct: 210 GPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGG 257
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 559 DYILREFLVSKGSESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEV 604
+Y +R ++ +GS + + + HY + +WPDH P +L + +V
Sbjct: 155 NYTIRNLVLKQGSHT-QHVKHYWYTSWPDHKTPDSAQPLLQLMLDV 199
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 9/97 (9%)
Query: 248 GKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDD---------KVTHVMIRCQAEKY 298
G +AE L+ KG+ +FLVRES S+PGDFVLSV +D +VTH+ + C+ +Y
Sbjct: 15 GGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRY 74
Query: 299 DVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPF 335
VGG E FDSLT L+EH+K+ + E SG V+L+QP+
Sbjct: 75 TVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPY 111
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr
Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex With
Rvipyfvplnr Peptide
Length = 109
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ G EAE L+L +G +GSFL R S+S PGDF LSVR + VTH+ I+ + YD+
Sbjct: 10 FHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLY 69
Query: 302 GGEQFDSLTQLIEHY--KRNPMVETSGTVVHLKQPFN 336
GGE+F +L +L+++Y + E +G V+ LK P N
Sbjct: 70 GGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 106
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 223 DCYDLYGGEKFATLSELVQFYMENQGKEAEQ 253
D YDLYGGEKFATL+ELVQ+YME+ G+ E+
Sbjct: 64 DYYDLYGGEKFATLAELVQYYMEHHGQLKEK 94
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ G EAE L+L +G +GSFL R S+S PGDF LSVR + VTH+ I+ + YD+
Sbjct: 5 FHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLY 64
Query: 302 GGEQFDSLTQLIEHY--KRNPMVETSGTVVHLKQPFN 336
GGE+F +L +L+++Y + E +G V+ LK P N
Sbjct: 65 GGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLN 101
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 223 DCYDLYGGEKFATLSELVQFYMENQGKEAEQ 253
D YDLYGGEKFATL+ELVQ+YME+ G+ E+
Sbjct: 59 DYYDLYGGEKFATLAELVQYYMEHHGQLKEK 89
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 358 SKAGFWEEFESLQQQESRHLFTRREGQK-------LDNRNKNRYKNILPFDHTRVKLKDV 410
+K ++E +Q++ S L R+E + L NR+KNRY +IL + T L
Sbjct: 10 TKLSVQAQYERVQREFS--LLLRQEDPRSISFATSLKNRHKNRYLDILANEAT---LYPQ 64
Query: 411 DEDVPGAE---YINANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEM 467
D PGA YIN N I D ++A Q + + DF +M++++ + +++M TK
Sbjct: 65 VTDAPGASTPYYINGNLIDL-DLPHKFVACQAPVVQGIPDFLAMLYEKKISLVIMVTKLE 123
Query: 468 ERGKNKCAKYWPDDHQSKTYGAVCVNN------------MYESVTTDYILREFLV-SKGS 514
E G K +YWP++ S G++ V+ YE I R +L+ +
Sbjct: 124 EGGFVKADRYWPEERGS---GSIAVSGNCGLTISEDPGKAYEVEDELKITRRYLILQRAD 180
Query: 515 ESPRKIYHYHFQAWPDHGVPSDPGCVLNFLYEVCVNNMYESVTT 558
E P K + WPDHG+P + E + N+ S TT
Sbjct: 181 EPPHKFTQVQYTGWPDHGIPQSATSL-----EALLTNVKNSPTT 219
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 68 TNMKYSISAGPVVVHCSAGIGRTGTFI 94
TN+K S + PVVVHCSAGIGRTGT I
Sbjct: 211 TNVKNSPTTVPVVVHCSAGIGRTGTLI 237
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 22/86 (25%)
Query: 108 PVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWFKLKPSTNSSTSLFS 167
PVVVHCSAGIGRTGT I L +++ T + T+++
Sbjct: 221 PVVVHCSAGIGRTGTLIGAYAALTHLER----------------------GTLTDTTVYD 258
Query: 168 ITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ GMVQ QY +YL +
Sbjct: 259 VVSAMRRQRFGMVQRMEQYFVIYLTL 284
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 365 EFESLQQQES-RHL-FTRREGQKLDNRNKNRYKNILPFDHTRVK--LKDVDEDVPGAEYI 420
EF LQ+QE+ R++ FT L NR+KNRY +IL + T LK V YI
Sbjct: 24 EFVQLQRQENPRNINFT----TSLKNRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYI 79
Query: 421 NANYIQSEDGGKSYIATQGCLPSTMNDFWSMVWQENVRVIVMTTKEMERGKNKCAKYWPD 480
N N I D +++A Q +P + DF + ++ V ++VM TK E G K +YWP+
Sbjct: 80 NGNLIDL-DLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPE 138
Query: 481 DHQSKT------YGAVCVNNMYES-----VTTDYILREFLVSKGSESPRKIYHYHFQAWP 529
+ + + A+ V E+ D + R ++ + ++ + WP
Sbjct: 139 EEEDSLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWP 198
Query: 530 DHGVPSDPGCVLNFLYEVCVNNMYESVTTDYIL 562
DHGVP ++ ++ + VTT IL
Sbjct: 199 DHGVPESAAS-----FDELLSVIKNCVTTSPIL 226
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 97 DMILDQIKK---HGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGLDCEIDIQRTIQHAWF 153
D +L IK P++VHCSAGIGRTGT I L I++ L
Sbjct: 210 DELLSVIKNCVTTSPILVHCSAGIGRTGTLIGAYAALLHIERGIL--------------- 254
Query: 154 KLKPSTNSSTSLFSITYKPYPNVSGMVQTEAQYKFVYLAV 193
+ ++++SI GMVQ QY +Y+ V
Sbjct: 255 -------TDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTV 287
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 70 MKYSISAGPVVVHCSAGIGRTGTFI 94
+K ++ P++VHCSAGIGRTGT I
Sbjct: 216 IKNCVTTSPILVHCSAGIGRTGTLI 240
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 237 SELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE 296
S+ +YM ++ Q LQ ++G FLVR+S + PGD+VLSV + +V+H +I
Sbjct: 9 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68
Query: 297 KYDVGGGEQFDSLTQLIEHYK 317
+ G ++FD L L+E YK
Sbjct: 69 RRFKIGDQEFDHLPALLEFYK 89
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 237 SELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE 296
S+ +YM ++ Q LQ ++G FLVR+S + PGD+VLSV + +V+H +I
Sbjct: 9 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68
Query: 297 KYDVGGGEQFDSLTQLIEHYK 317
+ G ++FD L L+E YK
Sbjct: 69 RRFKIGDQEFDHLPALLEFYK 89
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 237 SELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE 296
S+ +YM ++ Q LQ ++G FLVR+S + PGD+VLSV + +V+H +I
Sbjct: 16 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 75
Query: 297 KYDVGGGEQFDSLTQLIEHYK 317
+ G ++FD L L+E YK
Sbjct: 76 RRFKIGDQEFDHLPALLEFYK 96
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE + ++G G FL+R+S+S P DF +S++ K H ++ + Y + G +F ++
Sbjct: 12 QAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI-GQRKFSTM 70
Query: 310 TQLIEHYKRNPM 321
+L+EHYK+ P+
Sbjct: 71 EELVEHYKKAPI 82
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE + ++G G FL+R+S+S P DF +S++ K H ++ + Y + G +F ++
Sbjct: 16 QAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI-GQRKFSTM 74
Query: 310 TQLIEHYKRNPM 321
+L+EHYK+ P+
Sbjct: 75 EELVEHYKKAPI 86
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 236 LSELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 295
LS + F+ + ++AE+L L + G FLVRES + PGD+ L V +D KV H I A
Sbjct: 5 LSLMPWFHGKITREQAERL-LYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA 63
Query: 296 EKYDVGGGEQFDSLTQLIEHYKRN 319
K + F++L QL+EHY +
Sbjct: 64 SKLSIDEEVYFENLMQLVEHYTSD 87
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 236 LSELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 295
LS + F+ + ++AE+L L + G FLVRES + PGD+ L V D KV H I A
Sbjct: 5 LSLMPWFHGKITREQAERL-LYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHA 63
Query: 296 EKYDVGGGEQFDSLTQLIEHYKRN 319
K + F++L QL+EHY +
Sbjct: 64 SKLSIDEEVYFENLMQLVEHYTSD 87
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 230 GEKFATLSELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV 289
G K T L+ ++ +E + +L + G FLVRES + PGD+ L V + KV H
Sbjct: 70 GVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHY 129
Query: 290 MIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
I A K + F++L QL+EHY + G L +P
Sbjct: 130 RIMYHASKLSIDEEVYFENLMQLVEHY----TTDADGLCTRLIKP 170
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE + ++G G FL+R+S+S P DF +S++ K H ++ Y + G +F ++
Sbjct: 16 QAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCI-GQRRFHTM 74
Query: 310 TQLIEHYKRNPM 321
+L+EHYK+ P+
Sbjct: 75 DELVEHYKKAPI 86
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE + ++G G FL+R+S+S P DF +S++ K H ++ Y + G +F ++
Sbjct: 12 QAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCI-GQRRFHTM 70
Query: 310 TQLIEHYKRNPM 321
+L+EHYK+ P+
Sbjct: 71 DELVEHYKKAPI 82
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 114 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 173
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 174 TLAELVHHH 182
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 111 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 170
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 171 TLAELVHHH 179
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 153 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 212
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 213 TLAELVHHH 221
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 79 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 138
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 139 TLAELVHHH 147
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 18 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 77
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 78 TLAELVHHH 86
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
EA++L+ K G FLVRES KPG++VLSV +D + H +I+ Y G F ++
Sbjct: 28 EAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRF-EGTGFSNI 83
Query: 310 TQLIEHYKRNPMVETSGTVVHLKQPF 335
QLI+H+ V T + V L P
Sbjct: 84 PQLIDHHYTTKQVITKKSGVVLLNPI 109
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE ++++ ++G+FLVR+ +++P + +S R + K+ H ++ + + +G E FDSL
Sbjct: 20 QAEHMLMRVPRDGAFLVRK-RNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSE-FDSL 77
Query: 310 TQLIEHYKRNPMVETSGTVVHLKQPFN 336
LI +Y+++P+ + L+ P N
Sbjct: 78 VDLISYYEKHPLYRK----MKLRYPIN 100
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 25 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 84
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 85 TLAELVHHH 93
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L G NGSFLVRES+S PG +S+R + +V H I ++ K V +F+
Sbjct: 14 RNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFN 73
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 74 TLAELVHHH 82
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDS 308
+EA L++ G+ SFLVR S + PGD+ L RT++ + I + GG ++S
Sbjct: 26 QEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNS 85
Query: 309 LTQLIEHYKRNPMVETSGTVVHLKQP 334
+ +I+HY++ +VE +LK+P
Sbjct: 86 IGDIIDHYRKEQIVEG----YYLKEP 107
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE ++++ ++G+FLVR+ +++P + +S R + K+ H ++ + + +G E FDSL
Sbjct: 133 QAEHMLMRVPRDGAFLVRK-RNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSE-FDSL 190
Query: 310 TQLIEHYKRNPMVETSGTVVHLKQPFN 336
LI +Y+++P+ + L+ P N
Sbjct: 191 VDLISYYEKHPLYRK----MKLRYPIN 213
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 252 EQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE----KYDVGGGEQFD 307
E I +GSFLVRES++ GD+ LS + KV H I + + K+ + FD
Sbjct: 27 EYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFD 86
Query: 308 SLTQLIEHYKRNPM 321
SL LI HY++ P+
Sbjct: 87 SLYDLITHYQQVPL 100
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE ++++ ++G+FLVR+ +++P + +S R + K+ H ++ + + +G E FDSL
Sbjct: 133 QAEHMLMRVPRDGAFLVRK-RNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSE-FDSL 190
Query: 310 TQLIEHYKRNPMVETSGTVVHLKQPFN 336
LI +Y+++P+ + L+ P N
Sbjct: 191 VDLISYYEKHPLYRK----MKLRYPIN 213
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 252 EQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE----KYDVGGGEQFD 307
E I +GSFLVRES++ GD+ LS + KV H I + + K+ + FD
Sbjct: 27 EYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFD 86
Query: 308 SLTQLIEHYKRNPM 321
SL LI HY++ P+
Sbjct: 87 SLYDLITHYQQVPL 100
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
+AE ++++ ++G+FLVR+ +++P + +S R + K+ H ++ + + +G E FDSL
Sbjct: 133 QAEHMLMRVPRDGAFLVRK-RNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSE-FDSL 190
Query: 310 TQLIEHYKRNPMVETSGTVVHLKQPFN 336
LI +Y+++P+ + L+ P N
Sbjct: 191 VDLISYYEKHPLYRK----MKLRYPIN 213
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 252 EQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE----KYDVGGGEQFD 307
E I +GSFLVRES++ GD+ LS + KV H I + + K+ + FD
Sbjct: 27 EYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFD 86
Query: 308 SLTQLIEHYKRNPM 321
SL LI HY++ P+
Sbjct: 87 SLYDLITHYQQVPL 100
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly
Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 14 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 72
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 73 LNELVDYHR 81
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 22 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 80
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 81 LNELVDYHR 89
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 23 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 81
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 82 LNELVDYHR 90
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 24 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 82
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 83 LNELVDYHR 91
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 18 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 76
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 77 LNELVDYHR 85
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain
Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
Length = 98
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 15 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 73
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 74 LNELVDYHR 82
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 13 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 71
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 72 LNELVDYHR 80
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 17 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 75
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 76 LNELVDYHR 84
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 17 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 75
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 76 LNELVDYHR 84
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQFD 307
+ A + +L NGSFLVRES+S PG +S+R + +V H I A+ K V +F
Sbjct: 25 RSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFS 84
Query: 308 SLTQLIEHY 316
+L +L+ H+
Sbjct: 85 TLAELVHHH 93
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 18 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 76
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 77 LNELVDYHR 85
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 69 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 127
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 128 LNELVDYHR 136
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 17 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 75
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 76 LNELVDYHR 84
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 18 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 76
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 77 LNELVDYHR 85
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 15 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 73
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 74 LNELVDYHR 82
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 14 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 72
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 73 LNELVDYHR 81
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 12 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 70
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 71 LNELVDYHR 79
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV-MIRCQAEKYDVGGGEQFDS 308
+AE+++ ++ +G+FL+RES+S PGDF LSV+ + V H ++R A KY + +F+S
Sbjct: 14 KAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNS 72
Query: 309 LTQLIEHYK 317
L +L+++++
Sbjct: 73 LNELVDYHR 81
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of Tyrosine
Phosphorylated Sites In The Linker For Activation Of T
Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 250 EAEQLILQKGKN-GSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDS 308
+AE L++ GK+ G F++R SQS PGDF +SVR +D V H + + E+F S
Sbjct: 20 QAENLLM--GKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPS 77
Query: 309 LTQLIEHYK 317
L +L+++Y+
Sbjct: 78 LNKLVDYYR 86
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 17/93 (18%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
+Y ++ +LQ ++G FLVR+S + PGD+VLSV + +V+H +I + V
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61
Query: 302 -----------------GGEQFDSLTQLIEHYK 317
G ++FDSL L+E YK
Sbjct: 62 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYK 94
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 226 DLYGGEKFATLSELVQFYMENQGKEAEQLILQK------GKNGSFLVRESQSKPGDFVLS 279
+L+ GEK+ F+ + + + + + +LQ+ K+G+FLVRES++ P D+ LS
Sbjct: 17 ELHFGEKW--------FHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLS 68
Query: 280 VRTDDKVTHVMIRCQAE----KYDVGGGEQFDSLTQLIEHYK 317
+V H IR E KY + F+S+ LI+HY+
Sbjct: 69 FWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYR 110
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDV 300
F+ + EA++LI+Q+G +G FLVR+SQS P FVLS+ K+ H I + ++
Sbjct: 29 FHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEM 88
Query: 301 -----GGGEQFDSLTQLIEHYKRNPMV 322
G +F L QL+E Y+ N V
Sbjct: 89 FHTLDDGHTRFTDLIQLVEFYQLNKGV 115
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 238 ELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEK 297
E +Y ++ +LQ ++G FLVR+S + PGD+VLSV + +V+H +I +
Sbjct: 9 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPR 68
Query: 298 YDVG-----------------GGEQFDSLTQLIEHYK 317
V G ++FDSL L+E YK
Sbjct: 69 PPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYK 105
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 238 ELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEK 297
E +Y ++ +LQ ++G FLVR+S + PGD+VLSV + +V+H +I +
Sbjct: 8 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPR 67
Query: 298 YDVG-----------------GGEQFDSLTQLIEHYK 317
V G ++FDSL L+E YK
Sbjct: 68 PPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYK 104
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 252 EQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGG-----GEQF 306
+QL+ + + G+FL+RES+S+ GDF LSV + V H IR + D GG + F
Sbjct: 30 KQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIR----RLDEGGFFLTRRKVF 85
Query: 307 DSLTQLIEHYKRNPMVETSGTVVHLKQP 334
+L + + +Y + G V L++P
Sbjct: 86 STLNEFVNYY----TTTSDGLCVKLEKP 109
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKV-THVMIRCQAEKYDVGGGEQ--- 305
+AE+L+ + GK+GSFLVR S+S + L V + V T+ ++ + +K+ V E
Sbjct: 21 KAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSM 80
Query: 306 --FDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
F L QLIE YK+ M G V HL+ P
Sbjct: 81 RFFTKLDQLIEFYKKENM----GLVTHLQYP 107
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 238 ELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEK 297
E +Y ++ +LQ ++G FLVR+S + PGD+VLSV + +V+H +I +
Sbjct: 11 ERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPR 70
Query: 298 YDVG-----------------GGEQFDSLTQLIEHYK 317
V G ++FDSL L+E YK
Sbjct: 71 PPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYK 107
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 17/80 (21%)
Query: 255 ILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG------------- 301
+LQ ++G FLVR+S + PGD+VLSV + +V+H +I + V
Sbjct: 26 LLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPS 85
Query: 302 ----GGEQFDSLTQLIEHYK 317
G ++FDSL L+E YK
Sbjct: 86 RLRIGDQEFDSLPALLEFYK 105
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 249 KEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRCQAEKYDVGG 302
K+AE+ +L G G+FL+RES++ G + LS+R D V H IR K D GG
Sbjct: 15 KDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR----KLDNGG 70
Query: 303 -----GEQFDSLTQLIEHYKRNPMVETSGTVV 329
QF++L QL++HY +S VV
Sbjct: 71 YYITTRAQFETLQQLVQHYSERAAGLSSRLVV 102
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 249 KEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRCQAEKYDVGG 302
K+AE+ +L G G+FL+RES++ G + LS+R D V H IR K D GG
Sbjct: 76 KDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR----KLDNGG 131
Query: 303 -----GEQFDSLTQLIEHYKRNPMVETSGTVV 329
QF++L QL++HY +S VV
Sbjct: 132 YYITTRAQFETLQQLVQHYSERAAGLSSRLVV 163
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 244 MENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGG 303
ME G E+ IL +G+FLVR+ +F +S++ + +V H+ I Y +
Sbjct: 16 MERAGAES---ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK 72
Query: 304 EQFDSLTQLIEHYKRNPM 321
+ F LT+L+E Y++N +
Sbjct: 73 KAFRGLTELVEFYQQNSL 90
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 236 LSELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 295
LS + F+ + G+EA Q LQ ++G FLVRES PGD+VL V V H + +
Sbjct: 1 LSLMPWFHGKISGQEAVQQ-LQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD 59
Query: 296 EKYDVGGGEQFDSLTQLIEHYKRN 319
+ F +L ++EHY ++
Sbjct: 60 GHLTIDEAVFFCNLMDMVEHYSKD 83
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 15/79 (18%)
Query: 249 KEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRCQAEKYDVGG 302
K+AE+ +L G G+FL+RES++ G + LS+R D V H IR K D GG
Sbjct: 77 KDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIR----KLDNGG 132
Query: 303 -----GEQFDSLTQLIEHY 316
QF++L QL++HY
Sbjct: 133 YYITTRAQFETLQQLVQHY 151
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
++ N ++ +L+ +G++L+RE ++ F +S++ +D+V H+ + + +
Sbjct: 24 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 83
Query: 302 GGEQFDSLTQLIEHYKRNPMVETSGTV-VHLKQPFNA 337
++FDSL +L+E+Y+ + + E+ + LK P+ +
Sbjct: 84 EAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYKS 120
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 244 MENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGG 303
ME G E+ IL +G+FLVR+ +F +S++ + +V H+ I Y +
Sbjct: 33 MERAGAES---ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK 89
Query: 304 EQFDSLTQLIEHYKRNPM 321
+ F LT+L+E Y++N +
Sbjct: 90 KAFRGLTELVEFYQQNSL 107
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
++ N ++ +L+ +G++L+RE ++ F +S++ +D+V H+ + + +
Sbjct: 18 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 77
Query: 302 GGEQFDSLTQLIEHYKRNPMVETSGTV-VHLKQPFNA 337
++FDSL +L+E+Y+ + + E+ + LK P++
Sbjct: 78 EAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEK----YDVGGG 303
+E+++LI Q+G +G FLVRESQ P FVLS+ KV H +I E+ + + G
Sbjct: 27 EESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDG 86
Query: 304 E-QFDSLTQLIEHYKRN 319
+ +F L QL+E ++ N
Sbjct: 87 QTRFTDLLQLVEFHQLN 103
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEK----YDVGGG 303
+E+++LI Q+G +G FLVRESQ P FVLS+ KV H +I E+ + + G
Sbjct: 24 EESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDG 83
Query: 304 E-QFDSLTQLIEHYKRN 319
+ +F L QL+E ++ N
Sbjct: 84 QTRFTDLLQLVEFHQLN 100
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 15/83 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H +IR K D GG
Sbjct: 19 RESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIR----KLDSGG 74
Query: 303 -----GEQFDSLTQLIEHYKRNP 320
QF+SL QL+ +Y ++
Sbjct: 75 FYITSRTQFNSLQQLVAYYSKHA 97
>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain
pdb|2DCR|A Chain A, Fully Automated Solution Structure Determination Of The
Fes Sh2 Domain
Length = 114
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 230 GEKFATLSELVQFYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHV 289
GE L E + ++ E +L++ +G FLVRESQ K ++VLSV D H
Sbjct: 7 GEVQKPLHEQLWYHGAIPRAEVAELLVH---SGDFLVRESQGKQ-EYVLSVLWDGLPRHF 62
Query: 290 MIRCQAEKYDVGGGEQFDSLTQLIEHY--KRNPMVETSGTVVHLKQP 334
+I+ Y + GE F S+ LI+H + P+ + SG V+H P
Sbjct: 63 IIQSLDNLYRL-EGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVP 108
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 249 KEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVGGGEQF 306
+E+EQ++L K NG FL+R ++ G + L + + KV H I + + K + G++F
Sbjct: 176 EESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKF 234
Query: 307 DSLTQLIEHY 316
D+L QL+EHY
Sbjct: 235 DTLWQLVEHY 244
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAE-KYDVGGGEQF 306
+EAE ++Q G +G +L+R+S++ G F LSV K H I + Y + GG
Sbjct: 23 EEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTH 82
Query: 307 DSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
S L ++ + E+ G V LK+PFN
Sbjct: 83 ASPADLCHYHSQ----ESDGLVCLLKKPFN 108
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 249 KEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVGGGEQF 306
+E+EQ++L K NG FL+R ++ G + L + + KV H I + + K + G++F
Sbjct: 177 EESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKF 235
Query: 307 DSLTQLIEHY 316
D+L QL+EHY
Sbjct: 236 DTLWQLVEHY 245
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVGGGEQF 306
+EAE ++Q G +G +L+R+S++ G F LSV K H I R Y + GG
Sbjct: 24 EEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTH 83
Query: 307 DSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
S L ++ + E+ G V LK+PFN
Sbjct: 84 ASPADLCHYHSQ----ESDGLVCLLKKPFN 109
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 261 NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHY--KR 318
+G FLVRESQ K ++VLSV D H +I+ Y + GE F S+ LI+H +
Sbjct: 32 SGDFLVRESQGK-QEYVLSVLWDGLPRHFIIQSLDNLYRL-EGEGFPSIPLLIDHLLSTQ 89
Query: 319 NPMVETSGTVVHLKQP 334
P+ + SG V+H P
Sbjct: 90 QPLTKKSGVVLHRAVP 105
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 261 NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIEHY--KR 318
+G FLVRESQ K ++VLSV D H +I+ Y + GE F S+ LI+H +
Sbjct: 32 SGDFLVRESQGK-QEYVLSVLWDGLPRHFIIQSLDNLYRL-EGEGFPSIPLLIDHLLSTQ 89
Query: 319 NPMVETSGTVVHLKQP 334
P+ + SG V+H P
Sbjct: 90 QPLTKKSGVVLHRAVP 105
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 6 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIR--- 62
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 63 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 101
>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
pdb|1CSZ|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A
Phosphopeptidefrom The Gamma Chain Of The High Affinity
Immunoglobin G Receptor, Nmr
Length = 112
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYD 299
F+ + +E+EQ++L K NG FL+R ++ G + L + + KV H I + + K
Sbjct: 16 FHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKLS 74
Query: 300 VGGGEQFDSLTQLIEHY 316
+ G++FD+L QL+EHY
Sbjct: 75 IPEGKKFDTLWQLVEHY 91
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 15 RESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 70
Query: 303 -----GEQFDSLTQLIEHYKRNP 320
QF+SL QL+ +Y ++
Sbjct: 71 FYITSRTQFNSLQQLVAYYSKHA 93
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYD 299
F+ + +E+EQ++L K NG FL+R ++ G + L + + KV H I + + K
Sbjct: 161 FHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKLS 219
Query: 300 VGGGEQFDSLTQLIEHY 316
+ G++FD+L QL+EHY
Sbjct: 220 IPEGKKFDTLWQLVEHY 236
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVGGGEQF 306
+EAE ++Q G +G +L+R+S++ G F LSV K H I R Y + GG
Sbjct: 15 EEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTH 74
Query: 307 DSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
S L ++ + E+ G V LK+PFN
Sbjct: 75 ASPADLCHYHSQ----ESDGLVCLLKKPFN 100
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 6 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIR--- 62
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 63 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 101
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 17 RESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 72
Query: 303 -----GEQFDSLTQLIEHYKRNP 320
QF+SL QL+ +Y ++
Sbjct: 73 FYITSRTQFNSLQQLVAYYSKHA 95
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ + G+EA Q LQ ++G FLVRES PGD+VL V V H + + +
Sbjct: 8 FHGKISGQEAVQQ-LQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 302 GGEQFDSLTQLIEHYKRN 319
F +L +EHY ++
Sbjct: 67 EAVFFCNLXDXVEHYSKD 84
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 11 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 67
Query: 296 EKYDVGG-----GEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 68 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 106
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 75 RESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 130
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF+SL QL+ +Y ++
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKH 152
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 75 RESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 130
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF+SL QL+ +Y ++
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKH 152
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 77 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 133
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 134 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 172
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 10 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 66
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 67 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 105
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 75 RESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 130
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF+SL QL+ +Y ++
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKH 152
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 15 RESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKIR----KLDSGG 70
Query: 303 -----GEQFDSLTQLIEHYKRNP 320
QF+SL QL+ +Y ++
Sbjct: 71 FYITSRTQFNSLQQLVAYYSKHA 93
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 7 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 63
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 64 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 102
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide
Length = 98
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 4 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 60
Query: 296 EKYDVGGGE-----QFDSLTQLIEHY 316
D GG F L +L+ HY
Sbjct: 61 -NLDNGGFYISPRITFPGLHELVRHY 85
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 5 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 61
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 62 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 100
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 6 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 62
Query: 296 EKYDVGGGE-----QFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 63 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 101
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 158 RESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 213
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF+SL QL+ +Y ++
Sbjct: 214 FYITSRTQFNSLQQLVAYYSKH 235
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 17 RESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKIR----KLDSGG 72
Query: 303 -----GEQFDSLTQLIEHYKRNP 320
QF+SL QL+ +Y ++
Sbjct: 73 FYITSRTQFNSLQQLVAYYSKHA 95
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide
S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 13 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 68
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 69 FYIWSRTQFSSLQQLVAYYSKH 90
>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain
Length = 110
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSV---RTDDK---VTHVMIRCQAE-KYDVGG 302
++EQL+ QKGK G+F+VR S S+ G + +S+ +DK V H + AE K +
Sbjct: 22 QSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAE 80
Query: 303 GEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
FDS+ +LI +++ N ++G + L+ P
Sbjct: 81 NYCFDSIPKLIHYHQHN----SAGMITRLRHP 108
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 12 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 67
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 68 FYITSRTQFSSLQQLVAYYSKH 89
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 13 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 68
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 69 FYITSRTQFSSLQQLVAYYSKH 90
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 13 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 68
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 69 FYITSRTQFSSLQQLVAYYSKH 90
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 12 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 67
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 68 FYITSRTQFSSLQQLVAYYSKH 89
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 14 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 69
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 70 FYITSRTQFSSLQQLVAYYSKH 91
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 77 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 133
Query: 296 EKYDVGG-----GEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 134 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 172
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal Structure
At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD-- 307
+AE L+ K ++G+FLVRES SK G + SV D +V H +I A Y G E ++
Sbjct: 21 KAENLLRGK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGY--GFAEPYNLY 76
Query: 308 -SLTQLIEHYKRNPMVE 323
SL +L+ HY+ +V+
Sbjct: 77 SSLKELVLHYQHTSLVQ 93
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 76 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 131
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 132 FYITSRTQFSSLQQLVAYYSKH 153
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 242 FYMENQGKEAEQLILQKGK-NGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRCQA 295
F+ K+AE+ +L G +GSFL+RES+S G F LSVR D+ V H IR
Sbjct: 69 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR--- 125
Query: 296 EKYDVGG-----GEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
D GG F L +L+ HY + G L +P
Sbjct: 126 -NLDNGGFYISPRITFPGLHELVRHYTN----ASDGLCTRLSRP 164
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B In
Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 250 EAEQLILQ--KGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD 307
+A QL+L+ G +G FLVR+S+++ G+ VL+ K H+ + A F
Sbjct: 20 KAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQ 79
Query: 308 SLTQLIEHYKRNPMVETSG 326
S+ ++EH++ +P+ SG
Sbjct: 80 SIFDMLEHFRVHPIPLESG 98
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD-- 307
+AE L+ K ++G+FLVRES SK G + SV D +V H +I A Y G E ++
Sbjct: 21 KAENLLRGK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGY--GFAEPYNLY 76
Query: 308 -SLTQLIEHYKRNPMVETSGTV-VHLKQPFNA 337
SL +L+ HY+ +V+ + ++ V L P A
Sbjct: 77 SSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD-- 307
+AE L+ K ++G+FLVRES SK G + SV D +V H +I A Y G E ++
Sbjct: 20 KAENLLRGK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGY--GFAEPYNLY 75
Query: 308 -SLTQLIEHYKRNPMVETSGTV-VHLKQPFNA 337
SL +L+ HY+ +V+ + ++ V L P A
Sbjct: 76 SSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 107
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 14 RESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 69
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 70 FYITSRTQFSSLQQLVAYYSKH 91
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRTDD-----KVTHVMIRCQAEKYDVGG 302
+E+E L+L + G+FLVRES++ G + LSV D V H IR K D GG
Sbjct: 14 RESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIR----KLDSGG 69
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 70 FYITSRTQFSSLQQLVAYYSKH 91
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 242 FYMENQGKEAEQLILQKGKN-GSFLVRESQSKPGDFVLSV-----RTDDKVTHVMIRCQA 295
F+ K+AE+ +L G GSF++R+S++ G + LSV R D V H IR
Sbjct: 73 FFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT-- 130
Query: 296 EKYDVGG-----GEQFDSLTQLIEHYKRN 319
D GG F +L +L++HYK+
Sbjct: 131 --LDNGGFYISPRSTFSTLQELVDHYKKG 157
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 242 FYMENQGKEAEQLILQKGKN-GSFLVRESQSKPGDFVLSV-----RTDDKVTHVMIRCQA 295
F+ K+AE+ +L G GSF++R+S++ G + LSV R D V H IR
Sbjct: 67 FFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT-- 124
Query: 296 EKYDVGG-----GEQFDSLTQLIEHYKRN 319
D GG F +L +L++HYK+
Sbjct: 125 --LDNGGFYISPRSTFSTLQELVDHYKKG 151
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRT------DDKVTHVMIR---CQAEKYDV 300
+AE+L+L GK G+F+VR+S++ PG + +SV T + + H I+ ++Y V
Sbjct: 18 KAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYV 76
Query: 301 GGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
FDS+ LI++++ N G V L+ P
Sbjct: 77 AEKYVFDSIPLLIQYHQYN----GGGLVTRLRYP 106
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain
Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound To
A Phosphopeptide
Length = 109
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRT------DDKVTHVMIR---CQAEKYDV 300
+AE+L+L GK G+F+VR+S++ PG + +SV T + + H I+ ++Y V
Sbjct: 18 KAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYV 76
Query: 301 GGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
FDS+ LI++++ N G V L+ P
Sbjct: 77 AEKYVFDSIPLLIQYHQYN----GGGLVTRLRYP 106
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 237 SELVQFYMENQGKEAEQ-LILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 295
+ L FY EAE+ L L +G FL+R+ G +VLS+ D + H I Q
Sbjct: 4 AHLPFFYGSISRAEAEEHLKLAGXADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL 63
Query: 296 E-KYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
Y + GG+ +L E Y R+P G +L++P N
Sbjct: 64 NGTYAIAGGKAHCGPAELCEFYSRDP----DGLPCNLRKPCN 101
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 235 TLSELVQFYMENQGKEAEQLILQKGK--NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI- 291
T E +Y + +E + L G +G FL+R + + G + LS+ V H +I
Sbjct: 154 TAHERXPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLIS 212
Query: 292 RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQ 333
+ +A KY + G +FD+L QL+E+ K ++ G + LK+
Sbjct: 213 QDKAGKYCIPEGTKFDTLWQLVEYLK----LKADGLIYCLKE 250
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRT------DDKVTHVMIR---CQAEKYDV 300
+AE+L+L GK G+F+VR+S++ PG + +SV T + + H I+ ++Y V
Sbjct: 19 KAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYV 77
Query: 301 GGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
FDS+ LI++++ N G V L+ P
Sbjct: 78 AEKYVFDSIPLLIQYHQYN----GGGLVTRLRYP 107
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 242 FYMENQGKEAE-QLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDV 300
F+ K+AE QL+ K GSFL+RES+S G F LSV+ V+ + D
Sbjct: 15 FFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDN 74
Query: 301 GG-----GEQFDSLTQLIEHYKR 318
GG F +L L++HY +
Sbjct: 75 GGYYISPRITFPTLQALVQHYSK 97
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRT------DDKVTHVMIR---CQAEKYDV 300
+AE+L+L GK G+F+VR+S++ PG + +SV T + + H I+ ++Y V
Sbjct: 20 KAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYV 78
Query: 301 GGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
FDS+ LI++++ N G V L+ P
Sbjct: 79 AEKYVFDSIPLLIQYHQYN----GGGLVTRLRYP 108
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQKGKN-GSFLVRESQSKPGDFVLSVRT-----DDKVTHVMIRCQAEKYDVGG 302
K+AE+ +L G GSF++R+S++ G + LSVR D V H IR D GG
Sbjct: 81 KDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT----LDNGG 136
Query: 303 -----GEQFDSLTQLIEHYKRN 319
F +L +L++HYK+
Sbjct: 137 FYISPRSTFSTLQELVDHYKKG 158
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQKGKN-GSFLVRESQSKPGDFVLSVRT-----DDKVTHVMIRCQAEKYDVGG 302
K+AE+ +L G GSF++R+S++ G + LSVR D V H IR D GG
Sbjct: 14 KDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT----LDNGG 69
Query: 303 -----GEQFDSLTQLIEHYKRN 319
F +L +L++HYK+
Sbjct: 70 FYISPRSTFSTLQELVDHYKKG 91
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 237 SELVQFYMENQGKEAEQ-LILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 295
+ L FY EAE+ L L +G FL+R+ G +VLS+ D + H I Q
Sbjct: 9 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL 68
Query: 296 E-KYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
Y + GG+ +L E Y R+P G +L++P N
Sbjct: 69 NGTYAIAGGKAHCGPAELCEFYSRDP----DGLPCNLRKPCN 106
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 235 TLSELVQFYMENQGKEAEQLILQKGK--NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI- 291
T E + +Y + +E + L G +G FL+R + + G + LS+ V H +I
Sbjct: 159 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLIS 217
Query: 292 RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQ 333
+ +A KY + G +FD+L QL+E+ K ++ G + LK+
Sbjct: 218 QDKAGKYCIPEGTKFDTLWQLVEYLK----LKADGLIYCLKE 255
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 249 KEAEQLILQ-KGKNGSFLVRESQSKPGDFVLSVRT-----DDKVTHVMIRCQAEKYDVGG 302
+E+E+L+L + G+FLVRES++ G + LSV V H IR K D GG
Sbjct: 12 RESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIR----KLDSGG 67
Query: 303 -----GEQFDSLTQLIEHYKRN 319
QF SL QL+ +Y ++
Sbjct: 68 FYITSRTQFSSLQQLVAYYSKH 89
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSL 309
EAE ++++ ++G+FL+R+ + + ++ R KV H I + +G F+SL
Sbjct: 30 EAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESL 88
Query: 310 TQLIEHYKRNPM 321
+L+ +Y+++ +
Sbjct: 89 VELVSYYEKHAL 100
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ + +EAE L+ NG FLVRES + PG +VL+ + H+++ E
Sbjct: 10 FHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLL-VDPEGVVRT 65
Query: 302 GGEQFDSLTQLIEHYKRNPM-VETSGTVVHLKQP 334
+F+S++ LI ++ N + + ++G+ + L+QP
Sbjct: 66 KDHRFESVSHLISYHMDNHLPIISAGSELCLQQP 99
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 237 SELVQFYMENQGKEAEQ-LILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQA 295
+ L FY EAE+ L L +G FL+R+ G +VLS+ D + H I Q
Sbjct: 6 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL 65
Query: 296 E-KYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
Y + GG+ +L E Y R+P G +L++P N
Sbjct: 66 NGTYAIAGGKAHCGPAELCEFYSRDP----DGLPCNLRKPCN 103
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 235 TLSELVQFYMENQGKEAEQLILQKGK--NGSFLVRESQSKPGDFVLSVRTDDKVTHVMI- 291
T E + +Y + +E + L G +G FL+R + + G + LS+ V H +I
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLIS 214
Query: 292 RCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQ 333
+ +A KY + G +FD+L QL+E+ K ++ G + LK+
Sbjct: 215 QDKAGKYCIPEGTKFDTLWQLVEYLK----LKADGLIYCLKE 252
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 242 FYMENQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVG 301
F+ + +EAE L+ NG FLVRES + PG +VL+ + H+++ E
Sbjct: 10 FHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDPEGVVRT 65
Query: 302 GGEQFDSLTQLIEHYKRNPM-VETSGTVVHLKQP 334
+F+S++ LI ++ N + + ++G+ + L+QP
Sbjct: 66 KDHRFESVSHLISYHMDNHLPIISAGSELCLQQP 99
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 238 ELVQFYMENQGK-EAEQLILQKGKNGSFLVRESQSKPGDFVLSV---RTDDK---VTH-V 289
E+ ++Y ++ + +AEQL+ Q+GK G F+VR+S SK G + +SV T D + H V
Sbjct: 9 EMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYV 67
Query: 290 MIRCQAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFN 336
+ +Y + F ++ +LI +++ N ++G + LK P +
Sbjct: 68 VCSTPQSQYYLAEKHLFSTIPELINYHQHN----SAGLISRLKYPVS 110
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide
Length = 103
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKV-THVMIRCQAEKYDVGGGEQ-- 305
+E E L+L+ G +G+FL+R+S+S PG L V V ++ + R + Y +
Sbjct: 13 RECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTP 72
Query: 306 ---FDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
F +L +L+ Y + G VVHL P
Sbjct: 73 RTIFPNLQELVSKYGK----PGQGLVVHLSNP 100
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 240 VQFYMENQGKEAEQLILQKGKNGSFLVRESQSK-PGDFVLSVRTDDKVTHVMIRCQAEKY 298
++Y + +E L+ +G+FLVR++ +K GD+ L++R + I + KY
Sbjct: 11 AEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKY 70
Query: 299 DVGGGEQFDSLTQLIEHYKRNPMVE 323
F+S+ +LI HY+ + +
Sbjct: 71 GFSDSLTFNSVVELINHYRNESLAQ 95
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 240 VQFYMENQGKEAEQLILQKGKNGSFLVRESQSK-PGDFVLSVRTDDKVTHVMIRCQAEKY 298
++Y + +E L+ +G+FLVR++ +K GD+ L++R + I + KY
Sbjct: 11 AEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKY 70
Query: 299 DVGGGEQFDSLTQLIEHYKRNPMVE 323
F+S+ +LI HY+ + +
Sbjct: 71 GFSDPLTFNSVVELINHYRNESLAQ 95
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDV----GG 302
+E+ ++I Q+G +G FL+R+SQS P FVL++ K+ + I C+ + G
Sbjct: 15 EESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDG 74
Query: 303 GEQFDSLTQLIEHYKRNPMV 322
+F L QL++ Y+ N V
Sbjct: 75 NTKFSDLIQLVDFYQLNKGV 94
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 240 VQFYMENQGKEAEQLILQKGKNGSFLVRESQSK-PGDFVLSVRTDDKVTHVMIRCQAEKY 298
++Y + +E L+ +G+FLVR++ +K GD+ L++R + I + KY
Sbjct: 4 AEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKY 63
Query: 299 DVGGGEQFDSLTQLIEHYKRNPMVE 323
F+S+ +LI HY+ + +
Sbjct: 64 GFSDPLTFNSVVELINHYRNESLAQ 88
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 249 KEAEQLILQKG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDV----GG 302
+E+ ++I Q+G +G FL+R+SQS P FVL++ K+ + I C+ + G
Sbjct: 15 EESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDG 74
Query: 303 GEQFDSLTQLIEHYKRNPMV 322
+F L QL++ Y+ N V
Sbjct: 75 NTKFSDLIQLVDFYQLNKGV 94
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 248 GKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGG---- 303
G EA L+L G+FL+R+S + F LSV+T ++ I+C+ + +
Sbjct: 32 GGEA-NLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRST 90
Query: 304 ---EQFDSLTQLIEHYKRNP 320
+FD + +L+ HY P
Sbjct: 91 QPVPRFDCVLKLVHHYMPPP 110
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 230 GEKFATLSELVQFYMENQGK-EAEQLILQKGKNGSFLVRESQSKPGDFVLSV------RT 282
G K L E+ ++Y N + +AE L+ Q+ K G+F+VR+S+ G + +SV T
Sbjct: 7 GNKITNL-EIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMGARRST 64
Query: 283 DDKVTHVMIRCQ-AEKYDVGGGEQFDSLTQLIEHYKRNPMVETSGTVVHLKQP 334
+ + H I+ + ++ V F S+ +LI +++ N +G + L+ P
Sbjct: 65 EAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHN----AAGLMTRLRYP 113
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 236 LSELVQFYMENQGKEAEQLILQKG--KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRC 293
LS+ F+ +A QL+L G +G F++R+S+++PG+ VL+ K H+ +
Sbjct: 8 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL 67
Query: 294 QAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSG 326
F S+ ++ H+ +P+ SG
Sbjct: 68 NGHGQCHVQHLWFQSVFDMLRHFHTHPIPLESG 100
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 240 VQFYMENQGKEAEQLILQKGKNGSFLVRESQSK-PGDFVLSVRTDDKVTHVMIRCQAEKY 298
++Y + +E L+ +G+FLVR++ +K GD+ L++R + I + KY
Sbjct: 11 AEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKY 70
Query: 299 DVGGGEQFDSLTQLIEHYKRNPMVE 323
F S+ +LI HY+ + +
Sbjct: 71 GFSDPLTFSSVVELINHYRNESLAQ 95
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 238 ELVQFYMENQGKEAEQLILQKGKN--GSFLVRESQSKPGDFVLSVRTDDK---VTHVMIR 292
E FY +E +L + + G+FL+R+S S+PG++ L+VR D+ V H +I
Sbjct: 10 EWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIE 68
Query: 293 CQAEKYD--VGGG-----EQFDSLTQLIEHYKRNPMVETSGTVVHLKQPFNATRITVSNI 345
K D G + F + L+ H+K + E S + K T
Sbjct: 69 RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFT 128
Query: 346 HDRVTELQKENSSK 359
+R T+L E +
Sbjct: 129 GERETDLPFEQGER 142
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 88 GRTGTFIVIDMILDQIKK-HGPVVVHCSAGIGRTGTFIV 125
G T T ++ LD + G + VHC AG+GRTGT I
Sbjct: 250 GSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIA 288
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 75 SAGPVVVHCSAGIGRTGTFIV 95
+ G + VHC AG+GRTGT I
Sbjct: 268 AEGAIAVHCKAGLGRTGTLIA 288
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 227 LYGGEKFATLS----ELVQFYMENQGKEAEQLILQKGKN--GSFLVRESQSKPGDFVLSV 280
+ GG++ T E FY +E +L + + G+FL+R+S S+PG++ L+V
Sbjct: 24 MTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTV 82
Query: 281 RTDDK---VTHVMIRCQAEKYD--VGGG-----EQFDSLTQLIEHYKRNPMVETSGTVVH 330
R D+ V H +I K D G + F + L+ H+K + E S +
Sbjct: 83 READEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAY 142
Query: 331 LKQPFNATRITVSNIHDRVTELQKENSSK 359
K T +R T+L E +
Sbjct: 143 KKPIIEVVVGTFKFTGERETDLPFEQGER 171
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 246 NQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGG--- 302
N+ KE L++ G+FL+R+S +SV+T T++ I Q K+ +
Sbjct: 27 NEAKEK----LKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIIC 82
Query: 303 ----GEQFDSLTQLIEHY-------KRNPMVETSGTV-VHLKQPF 335
+QFDS+ LI++Y + P +GTV ++L +P
Sbjct: 83 VKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPL 127
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 236 LSELVQFYMENQGKEAEQLILQKG--KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRC 293
LS+ F+ +A QL+L G +G F++R+S+++PG+ VL+ K H+ +
Sbjct: 8 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL 67
Query: 294 QAEKYDVGGGEQFDSLTQLIEHYKRNPMVETSG 326
F S+ + H+ +P+ SG
Sbjct: 68 NGHGQCHVQHLWFQSVFDXLRHFHTHPIPLESG 100
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGD--FVLSVRTDDKVTHVMIRC--QAEKYDVG--- 301
K AE+ + + K+GSFL+R+S + L + +V ++ +R ++Y +G
Sbjct: 33 KSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKK 92
Query: 302 -GGEQFDSLTQLIEHYKRNPMV 322
G E F S+ +++ ++ NP+V
Sbjct: 93 NGEEYFGSVVEIVNSHQHNPLV 114
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 256 LQKGKNGSFLVRESQSK-PGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIE 314
L+ +G+FLVR++ +K GD+ L++R + I + KY F S+ +LI
Sbjct: 26 LRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVELIN 85
Query: 315 HYKRNPMVE 323
HY+ + +
Sbjct: 86 HYRNESLAQ 94
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 255 ILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIE 314
+L+ ++G+FLVRES SK G + SV D +V H +I A Y G E ++ + L E
Sbjct: 316 LLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGY--GFAEPYNLYSSLKE 372
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 246 NQGKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RCQAEKYDVGGGE 304
++ + +L + G+FL+R S+ D+VLSVR V H I R + +
Sbjct: 10 SRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAV 69
Query: 305 QFDSLTQLIEHYK 317
F SL +L+ +++
Sbjct: 70 SFLSLPELVNYHR 82
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 256 LQKGKNGSFLVRESQSK-PGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLTQLIE 314
L+ +G+FLVR++ +K GD+ L++R + I + KY F S+ +LI
Sbjct: 26 LRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVVELIN 85
Query: 315 HYKRNPMVE 323
HY+ + +
Sbjct: 86 HYRNESLAQ 94
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 250 EAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFD-- 307
+AE+++ K ++G+FL+RES S+ G + SV D H +I A + G E ++
Sbjct: 205 QAEEMLSGK-RDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGF--GFAEPYNLY 260
Query: 308 -SLTQLIEHYKRNPMVE-TSGTVVHLKQPFNA 337
SL +L+ HY+ +V+ V L P A
Sbjct: 261 GSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With A
Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 251 AEQLILQKGKNGSFLVRESQSKPGDFVLSV 280
E+L+L G +GS+L+R+S+S PG + L V
Sbjct: 16 GEKLLLATGLDGSYLLRDSESVPGVYCLCV 45
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 251 AEQLILQKGKNGSFLVRESQSKPGDFVLSV 280
E+L+L G +GS+L+R+S+S PG + L V
Sbjct: 16 GEKLLLATGLDGSYLLRDSESVPGVYCLCV 45
>pdb|1OFW|A Chain A, Three Dimensional Structure Of The Oxidized Form Of Nine
Heme Cytochrome C At Ph 7.5
pdb|1OFW|B Chain B, Three Dimensional Structure Of The Oxidized Form Of Nine
Heme Cytochrome C At Ph 7.5
pdb|1OFY|A Chain A, Three Dimensional Structure Of The Reduced Form Of
Nine-Heme Cytochrome C At Ph 7.5
pdb|1OFY|B Chain B, Three Dimensional Structure Of The Reduced Form Of
Nine-Heme Cytochrome C At Ph 7.5
Length = 296
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 256 LQKGKNGSFLVRESQSKPGDFVLSVRTDDKVT------HVMIRCQAEKYDVGGGEQFDSL 309
+QKG NG+ L ++++ + VL+ +T + V+ V+I A+KY+ L
Sbjct: 142 MQKGINGTLLPGDNEALAAETVLAQKTVEPVSPMLAPYKVVIDALADKYEPSNFTHRRHL 201
Query: 310 TQLIEHYKRNPMV-------ETSGTVVHLKQPFNATRITVSNIHDRVTELQKENSSKAGF 362
T L+E K + + E H + P + T + H + E+ K N +
Sbjct: 202 TSLMERIKDDKLAQAFHNKPEILCATCHHRSPLSLTPPKCGSCHTK--EIDKANPGRPNL 259
Query: 363 WEEF 366
+
Sbjct: 260 MAAY 263
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 95 VIDMILDQIKKHGPVVVHCSAGIGRTGTFIV 125
V D I +KHG +VHC+AG+ R+ T +
Sbjct: 92 VADKIHSVSRKHGATLVHCAAGVSRSATLCI 122
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 82 HCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRTGTFIVIDM--ILDQIKKHGLD 139
HC AG+GRT F+V+ IL K V I R ++D+ I D+ K +G
Sbjct: 238 HCYAGMGRTTIFMVMHDILKNAKD-----VSFDDIIQRQKLIGIVDLSEIPDKKKNYGRK 292
Query: 140 CEIDIQRTIQH 150
I+ + +QH
Sbjct: 293 AYIERYQFVQH 303
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 67 QTNMKYSISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHCSAGIGRTGTFIVI 126
Q M + A P +V ++G G F ++ I D ++HG + +H A G +
Sbjct: 249 QIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHG-LWLHVDAAWGGS------ 301
Query: 127 DMILDQIKKHGLDCEIDIQRTIQHAW 152
++L Q +H LD IQR AW
Sbjct: 302 -VLLSQTHRHLLD---GIQRADSVAW 323
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 251 AEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDSLT 310
A+QL++ GS+L+RESQ +PG + L++R + + + + + G ++F+S+
Sbjct: 63 ADQLLIVA--EGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYDGKHF--VGEKRFESIH 118
Query: 311 QLI 313
L+
Sbjct: 119 DLV 121
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 248 GKEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGG---- 303
G EA L+L G+FL+R+S + F LSV+T ++ I+ + + +
Sbjct: 43 GGEA-NLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRST 101
Query: 304 ---EQFDSLTQLIEHY 316
+FD + +L+ HY
Sbjct: 102 QPVPRFDXVLKLVHHY 117
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 GRTGTFIVIDMILDQIKK-HGPVVVHCSAGIGRTGTFIV 125
G T T ++ LD + G + VH AG+GRTGT I
Sbjct: 250 GSTPTDAIVKEFLDICENAEGAIAVHSKAGLGRTGTLIA 288
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 110 VVHCSAGIGRTGTFIVIDMILDQIKKHGLDCE--IDIQRTIQ 149
+VHC GIGRTGT + +IL + GL+ E ID R ++
Sbjct: 93 LVHCVGGIGRTGTILASYLILTE----GLEVESAIDEVRLVR 130
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 80 VVHCSAGIGRTGTFIVIDMILDQ 102
+VHC GIGRTGT + +IL +
Sbjct: 93 LVHCVGGIGRTGTILASYLILTE 115
>pdb|2PTG|A Chain A, Crystal Structure Of Eimeria Tenella Enoyl Reductase
pdb|2PTG|B Chain B, Crystal Structure Of Eimeria Tenella Enoyl Reductase
Length = 319
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 74 ISAGPVVVHCSAGIGRTGTFIVIDMILDQIKKHGPVVVHC-SAGIGRTGTFIV 125
ISAGP+ ++ IG+ G ID+ +D + + P+ S +GR F++
Sbjct: 235 ISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLL 287
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 249 KEAEQLILQKGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGGGEQFDS 308
++A++L+ G G++++RESQ +PG + L++R ++ + + + + G ++F+S
Sbjct: 65 EQADELL--GGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDGKHF--VGEKRFES 120
Query: 309 LTQLI 313
+ L+
Sbjct: 121 IHDLV 125
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 104 KKHGPVVVHCSAGIGRTGTFIV 125
+++ PV+VHC+AG+ R+G I+
Sbjct: 123 QRNEPVLVHCAAGVNRSGAXIL 144
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 78 PVVVHCSAGIGRTGTFIV 95
PV+VHC+AG+ R+G I+
Sbjct: 127 PVLVHCAAGVNRSGAXIL 144
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 99 ILDQIKKHGPVV-VHCSAGIGRTGTFIVIDMILDQIKKHGL 138
I+D+ G V VHC+ G GRTGT + + +K+ GL
Sbjct: 80 IVDEANARGEAVGVHCALGFGRTGTMLACYL----VKERGL 116
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 99 ILDQIKKHGPVV-VHCSAGIGRTGTFIVIDMILDQIKKHGL 138
I+D+ G V VHC+ G GRTGT + + +K+ GL
Sbjct: 81 IVDEANARGEAVGVHCALGFGRTGTXLACYL----VKERGL 117
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 256 LQKGKNG-SFLVRESQSKPGDFVLSVRTDDKVTHVMIRCQAEKYDVGG 302
++KG +G F + +SKPG F+ SV D +R Q +V G
Sbjct: 15 MKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNG 62
>pdb|2CKZ|A Chain A, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25.
pdb|2CKZ|C Chain C, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 161
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 363 WEEFESLQQQESRHLFTRREGQKLDNRNKNRYKNILPFDHTRVKLKDVDEDVPGAEYINA 422
+E + L E +HL+ ++ L +++++ K P++H +L+ + +V IN
Sbjct: 14 YEVLKFLTDLEKKHLWDQKSLAAL-KKSRSKGKQNRPYNHP--ELQGITRNVVNYLSINK 70
Query: 423 NYIQSEDGGK 432
N+I ED G+
Sbjct: 71 NFINQEDEGE 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,171,468
Number of Sequences: 62578
Number of extensions: 823873
Number of successful extensions: 2960
Number of sequences better than 100.0: 262
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1947
Number of HSP's gapped (non-prelim): 701
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)