BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy852
(891 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 255 bits (652), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 130/299 (43%), Positives = 181/299 (60%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + + +L+ P + +G +L KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
V+LK + D K ++R + L++ +++D+ G IPFFV TLGTTSC
Sbjct: 204 VKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE V +DPRFE+ +V LGLVCFRL+ + L N LLE IN++ ++H+VP
Sbjct: 384 LSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVP 437
Score = 243 bits (620), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 158/250 (63%), Gaps = 16/250 (6%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQ 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131
LPE FL Q + ++ + + R +
Sbjct: 128 LPEAFLAGEAGEGGGVI----------------QGSASEATLVALLAARTKVVRRLQAAS 171
Query: 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET 191
P + +G +L KL+AY S +AHS VE+A ++ V+LK + D K ++R + L++ +++D+
Sbjct: 172 PGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKA 231
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
G IPFFV TLGTTSCCSFDNL E+GP+ E D+WLHVD AYAGS+FICPEFR +NG
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 252 TSFDNLHLSP 261
D+ + +P
Sbjct: 292 EFADSFNFNP 301
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 143/259 (55%), Gaps = 58/259 (22%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYR 327
SASE V +L+AR + + +L+ P + +G +L KL+AY S +AHS VE G I +
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 328 ----------------------------------------------DAIFDV-------- 333
D + +V
Sbjct: 206 LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265
Query: 334 -WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
WLHVD AYAGS+FICPEFR +NG+E+ADSFN N +KWLL FD S +WV R LT A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA 325
Query: 393 LVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
+DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +L+
Sbjct: 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 450 KLFEGKVRRDPRFEISNDV 468
FE V +DPRFE+ +V
Sbjct: 386 HEFEAFVLQDPRFEVCAEV 404
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 778 LQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASFELQ 822
+ LGLVCFRL+ + + N LLE IN++ ++H+VP Q
Sbjct: 404 VTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVPCRLRGQ 443
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 178/299 (59%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + I +L+ P + + ++ KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
V+LK + D ++R + L++ +++D+ G IPFF+ TLGTT+C
Sbjct: 204 VKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNK 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE VR+DPRFEI +V LGLVCFRL+ N + N LL+ IN++ ++H+VP
Sbjct: 384 LSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKV-----NEALLQRINSAKKIHLVP 437
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 163/260 (62%), Gaps = 36/260 (13%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLE 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN----IIVLTRGQ 127
LP+ FL N+ GGGVIQ + + +L
Sbjct: 128 LPKAFL--------------------------NEKAGEGGGVIQGSASEATLVALLAART 161
Query: 128 KKIH------PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K IH P + + ++ KL+AY S +AHS VE+A ++ V+LK + D ++R +
Sbjct: 162 KVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFF+ TLGTT+CCSFDNL E+GP+ + D+WLHVD AYAGS+FIC
Sbjct: 222 LQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 153/293 (52%), Gaps = 69/293 (23%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYR 327
SASE V +L+AR + I +L+ P + + ++ KL+AY S +AHS VE G I +
Sbjct: 146 GSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVK 205
Query: 328 ----------------------------------------------DAIFDV-------- 333
D + +V
Sbjct: 206 LKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKED 265
Query: 334 -WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
WLHVD AYAGS+FICPEFR +NG+E+ADSFN N +KWLL FD S +WV R LT A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGA 325
Query: 393 LVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
+DP YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H +L+
Sbjct: 326 FRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 450 KLFEGKVRRDPRFEISNDV-------RSSASECIFVCMLAARAQAISKLKKIH 495
FE VR+DPRFEI +V R S + +L Q I+ KKIH
Sbjct: 386 HEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALL----QRINSAKKIH 434
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 780 LGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVP 816
LGLVCFRL+ N V N LL+ IN++ ++H+VP
Sbjct: 406 LGLVCFRLKGSNKV-----NEALLQRINSAKKIHLVP 437
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 246 bits (629), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 177/299 (59%), Gaps = 44/299 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ SASE V +LAAR + I +L+ P + + ++ KL+AY S +AHS VE+A ++
Sbjct: 144 IQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC--------------- 572
V+LK + D ++R + L++ +++D+ G IPFF+ TLGTT+C
Sbjct: 204 VKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNK 263
Query: 573 ----------YRKS-----------QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
Y S G+E+ADSFN N + WLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMWVKKRTDLT 323
Query: 612 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668
A +DP YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
L+ FE VR+DPRFEI +V LGLVCFRL+ N + N LL+ IN++ ++H+VP
Sbjct: 384 LSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKV-----NEALLQRINSAKKIHLVP 437
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 163/260 (62%), Gaps = 36/260 (13%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET+++DWLGK +
Sbjct: 68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLE 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN----IIVLTRGQ 127
LP+ FL N+ GGGVIQ + + +L
Sbjct: 128 LPKAFL--------------------------NEKAGEGGGVIQGSASEATLVALLAART 161
Query: 128 KKIH------PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
K IH P + + ++ KL+AY S +AHS VE+A ++ V+LK + D ++R +
Sbjct: 162 KVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASA 221
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G IPFF+ TLGTT+CCSFDNL E+GP+ + D+WLHVD AYAGS+FIC
Sbjct: 222 LQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFIC 281
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR +NG D+ + +P
Sbjct: 282 PEFRHLLNGVEFADSFNFNP 301
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 152/293 (51%), Gaps = 69/293 (23%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYR 327
SASE V +L+AR + I +L+ P + + ++ KL+AY S +AHS VE G I +
Sbjct: 146 GSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVK 205
Query: 328 ----------------------------------------------DAIFDV-------- 333
D + +V
Sbjct: 206 LKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKED 265
Query: 334 -WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
WLHVD AYAGS+FICPEFR +NG+E+ADSFN N + WLL FD S +WV R LT A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGA 325
Query: 393 LVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
+DP YL+H H+ + DYRHW IPL RRFRSLK+WFV R YG+ GLQ YIR+H +L+
Sbjct: 326 FRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 450 KLFEGKVRRDPRFEISNDV-------RSSASECIFVCMLAARAQAISKLKKIH 495
FE VR+DPRFEI +V R S + +L Q I+ KKIH
Sbjct: 386 HEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALL----QRINSAKKIH 434
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 780 LGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVP 816
LGLVCFRL+ N V N LL+ IN++ ++H+VP
Sbjct: 406 LGLVCFRLKGSNKV-----NEALLQRINSAKKIHLVP 437
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 235 bits (599), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 176/298 (59%), Gaps = 43/298 (14%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ +ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE+A ++
Sbjct: 144 IQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG 203
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT-SC-------------- 572
V+L+ ++ ++ + +RGA L + ++QD G IPF+ TLGTT SC
Sbjct: 204 VKLRSVQSEN-HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 262
Query: 573 --------------------YRK-SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 611
YR +GIE ADSFN N + W+L FD S +W+ D +
Sbjct: 263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVV 322
Query: 612 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
+A VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC A
Sbjct: 323 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFA 382
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
K F D RFE++ ++ +GLVCFRL+ N + N LL+ IN G +H+VPA
Sbjct: 383 KQFGDLCVADSRFELAAEINMGLVCFRLKGSN-----ERNEALLKRINGRGHIHLVPA 435
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 159/250 (63%), Gaps = 17/250 (6%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHW P+FHAYFP+ NSYP+++ADMLS AI CIGF+W ASP+CTELE +++DWLGK +
Sbjct: 68 VTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLE 127
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131
LP +FL A + I+ + + LG + + K++H
Sbjct: 128 LPAEFL--------ACSGGKGGGVIQGTASESTLVALLGAKAKK--------LKEVKELH 171
Query: 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET 191
P DE +L KL+ YCS +AHS VE+A ++ V+L+ ++ ++ + +RGA L + ++QD
Sbjct: 172 PEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDVA 230
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
G IPF+ TLGTT+ C+FD L E GPV + ++W+HVD AYAGS+FICPE+R M G
Sbjct: 231 EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGI 290
Query: 252 TSFDNLHLSP 261
S D+ + +P
Sbjct: 291 ESADSFNFNP 300
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 138/256 (53%), Gaps = 55/256 (21%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----------- 316
+ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK 205
Query: 317 ---VETRGH---------------------------IQSYRDAIFD-------------V 333
V++ H + + FD +
Sbjct: 206 LRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL 265
Query: 334 WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393
W+HVD AYAGS+FICPE+R M GIE ADSFN N + W+L FD S +W+ D + +A
Sbjct: 266 WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAF 325
Query: 394 VVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 452
VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC AK F
Sbjct: 326 NVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQF 385
Query: 453 EGKVRRDPRFEISNDV 468
D RFE++ ++
Sbjct: 386 GDLCVADSRFELAAEI 401
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 18/71 (25%)
Query: 755 FVRMLGLVC-----FRLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINAS 809
F + G +C F L +E N+ GLVCFRL+ N + N LL+ IN
Sbjct: 381 FAKQFGDLCVADSRFELAAEINM--------GLVCFRLKGSN-----ERNEALLKRINGR 427
Query: 810 GRLHMVPASFE 820
G +H+VPA +
Sbjct: 428 GHIHLVPAKIK 438
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 182/322 (56%), Gaps = 45/322 (13%)
Query: 448 LAKLF---EGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLL 504
LAK+ E + P + ++S+ SE + +LAAR I ++K P DE L
Sbjct: 127 LAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLN 186
Query: 505 SKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS 564
++L+AY S +AHS VEKA +++ V++K L DD SLRG L++ +++D+ G +P FV
Sbjct: 187 ARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVC 246
Query: 565 TTLGTTS-------------CYRKS-----------------------QGIEYADSFNVN 588
TLGTT C R+ +GIEYADSF N
Sbjct: 247 ATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFN 306
Query: 589 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKL 647
+KW++ FD + WV D+YKL V+P+YL+H + G A D+ HW IPLSRRFRS+KL
Sbjct: 307 PSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKL 366
Query: 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD 707
WFVIR++G+ LQ ++R E+AK FE VR DP FEI LGLV FRL+ N+L
Sbjct: 367 WFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSL--- 423
Query: 708 QNNRKLLEDINASGRLHMVPAS 729
+L++I +GRL ++PA+
Sbjct: 424 --TENVLKEIAKAGRLFLIPAT 443
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 158/260 (60%), Gaps = 35/260 (13%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+WA+SP+CTELE V+DWL K +G
Sbjct: 73 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLG 132
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN----IIVLTRGQ 127
LPE FL + P S GGGV+QS + I +L +
Sbjct: 133 LPEHFLHH-------------------------HPSSQGGGVLQSTVSESTLIALLAARK 167
Query: 128 KKI------HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGAT 181
KI P DE L ++L+AY S +AHS VEKA +++ V++K L DD SLRG
Sbjct: 168 NKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEA 227
Query: 182 LRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241
L++ +++D+ G +P FV TLGTT C+FD L+E+GP+ +WLH+D AYAG++F+C
Sbjct: 228 LQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLC 287
Query: 242 PEFRPFMNGKTSFDNLHLSP 261
PEFR F+ G D+ +P
Sbjct: 288 PEFRGFLKGIEYADSFTFNP 307
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 139/253 (54%), Gaps = 56/253 (22%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHI---- 323
S+ SE + +L+AR I ++K P DE L ++L+AY S +AHS VE G I
Sbjct: 152 STVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVK 211
Query: 324 --------------QSYRDAI------------------------FD------------- 332
++ + AI FD
Sbjct: 212 MKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREG 271
Query: 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
+WLH+D AYAG++F+CPEFR F+ GIEYADSF N +KW++ FD + WV D+YKL
Sbjct: 272 LWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQT 331
Query: 393 LVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 451
V+P+YL+H + G A D+ HW IPLSRRFRS+KLWFVIR++G+ LQ ++R E+AK
Sbjct: 332 FSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKY 391
Query: 452 FEGKVRRDPRFEI 464
FE VR DP FEI
Sbjct: 392 FESLVRNDPSFEI 404
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 779 QLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASFE 820
LGLV FRL+ N++ +L++I +GRL ++PA+ +
Sbjct: 409 HLGLVVFRLKGPNSL-----TENVLKEIAKAGRLFLIPATIQ 445
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 37/250 (14%)
Query: 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKF 76
HPRF SG ++ ++++++ +++ +P +E VL L +G
Sbjct: 108 HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD 167
Query: 77 LMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDE 136
++ P G + N +N+ Y + Q RG + + P
Sbjct: 168 GIFCPGG---SISNMYAVNLARYQRYPDCKQ-----------------RGLRTLPP---- 203
Query: 137 GVLLSKLMAYCSKEAHSCVEKAAMMAFVRL-----KILEPDDKNSLRGATLRQVMQQDET 191
L + SKE H ++K A AF+ L ++++ D++ + L + + E
Sbjct: 204 ------LALFTSKECHYSIQKGA--AFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEA 255
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
G +PF VS T GTT +FD L I V + +WLHVD A+ GS + R ++G
Sbjct: 256 EGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315
Query: 252 TSFDNLHLSP 261
D++ +P
Sbjct: 316 QRADSVAWNP 325
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 328 DAIFDV------WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCL 381
+AI DV WLHVD A+ GS + R ++GI+ ADS N +K L S L
Sbjct: 279 EAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSAL 338
Query: 382 WVADRYKLTS---ALVVDPLYLQHG-HEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 437
+ D L L+ Q ++ A+D + RR LKLW + + G G
Sbjct: 339 LLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQG 398
Query: 438 LQKYIRRHCELAKLFEGKVRRDPRFEI 464
L++ I + LA+ ++++ FE+
Sbjct: 399 LERRIDQAFVLARYLVEEMKKREGFEL 425
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 47/238 (19%)
Query: 504 LSKLMAYCSKEAHSCVEKAAMMAFVRL-----KILEPDDKNSLRGATLRQVMQQDETMGY 558
L L + SKE H ++K A AF+ L ++++ D++ + L + + E G
Sbjct: 201 LPPLALFTSKECHYSIQKGA--AFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGA 258
Query: 559 IPFFVSTTLGTTS-------------CYRKS-----------------------QGIEYA 582
+PF VS T GTT C R GI+ A
Sbjct: 259 VPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRA 318
Query: 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTS---ALVVDPLYLQHG-HEGAIDYRHWGIPL 638
DS N +K L S L + D L L+ Q ++ A+D +
Sbjct: 319 DSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC 378
Query: 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF 696
RR LKLW + + G GL++ I + LA+ ++++ FE+ + VCF
Sbjct: 379 GRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF 436
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 110/250 (44%), Gaps = 35/250 (14%)
Query: 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKF 76
HPR+ +G + AD L+ F++ +P LE + L + + IG P
Sbjct: 88 HPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWPGG- 146
Query: 77 LMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDE 136
G +P GG I N+ + + K+ P V E
Sbjct: 147 -----SGDGIFSP---------------------GGAIS---NMYAMMIARFKMFPEVKE 177
Query: 137 GVL--LSKLMAYCSKEAHSCVEKAAMMAFV---RLKILEPDDKNSLRGATLRQVMQQDET 191
+ L +L+A+ S+ +H ++K A + + +++ D++ + + L + + + +
Sbjct: 178 KGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQ 237
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
G++PF VS T GTT +FD L + + K++ +W+HVD A+ G + + + ++G
Sbjct: 238 KGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGV 297
Query: 252 TSFDNLHLSP 261
+++ +P
Sbjct: 298 ERANSVTWNP 307
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 14/191 (7%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+ +W+HVD A+ G + + + ++G+E A+S N + + S L V + +
Sbjct: 270 YKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQ 329
Query: 391 SALVVDPLYL--QHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
+ + YL Q H + + D + R KLW + R G +G + ++ + E
Sbjct: 330 NCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLE 389
Query: 448 LAKLFEGKVRRDPRFEISNDVRSSASECIF------VCMLAARAQAISKLKKIHPFVDEG 501
LA+ ++ +E+ D + + F + L + +S+L K+ P
Sbjct: 390 LAEYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERMSRLSKVAP----- 444
Query: 502 VLLSKLMAYCS 512
V+ +++M Y +
Sbjct: 445 VIKARMMEYGT 455
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 99/247 (40%), Gaps = 43/247 (17%)
Query: 485 AQAISKLKKIHPFVDEGVL-LSKLMAYCSKEAHSCVEKAAMMAFV---RLKILEPDDKNS 540
A I++ K ++G+ L +L+A+ S+ +H ++K A + + +++ D++
Sbjct: 163 AMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGK 222
Query: 541 LRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------------- 574
+ + L + + + + G++PF VS T GTT C +
Sbjct: 223 MIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGG 282
Query: 575 ----------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL--Q 622
K G+E A+S N + + S L V + + + + YL Q
Sbjct: 283 GLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQ 342
Query: 623 HGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP 681
H + + D + R KLW + R G +G + ++ + ELA+ ++
Sbjct: 343 DKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNRE 402
Query: 682 RFEISND 688
+E+ D
Sbjct: 403 GYEMVFD 409
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 35/250 (14%)
Query: 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKF 76
HPRF +G + + L+ F++ +P +E I L + + +G K
Sbjct: 95 HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK- 153
Query: 77 LMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDE 136
G +P GG I ++ +I+ + K P V
Sbjct: 154 -----DGDGIFSP---------------------GGAISNMYSIMA---ARYKYFPEVKT 184
Query: 137 GVL--LSKLMAYCSKEAHSCVEKA-AMMAFV--RLKILEPDDKNSLRGATLRQVMQQDET 191
+ + KL+ + S+++H ++KA A + F + +++ +++ + A + + +
Sbjct: 185 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQ 244
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
GY+PF+V+ T GTT +FD + EI + +++++WLHVD A+ G + + R +NG
Sbjct: 245 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI 304
Query: 252 TSFDNLHLSP 261
+++ +P
Sbjct: 305 ERANSVTWNP 314
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+++WLHVD A+ G + + R +NGIE A+S N + + S + V ++ L
Sbjct: 277 YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQ 336
Query: 391 SALVVDPLYL--QHGH-EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
+ YL Q H + + D I R K W + + G G + I + E
Sbjct: 337 GCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 396
Query: 448 LAKLFEGKVRRDPRFE-ISNDVRSSASECIFVCMLAARA-----QAISKLKKIHP 496
LA+ K++ FE + N + C + + R Q KL K+ P
Sbjct: 397 LAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAP 451
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 42/224 (18%)
Query: 504 LSKLMAYCSKEAHSCVEKA-AMMAFV--RLKILEPDDKNSLRGATLRQVMQQDETMGYIP 560
+ KL+ + S+++H ++KA A + F + +++ +++ + A + + + GY+P
Sbjct: 190 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVP 249
Query: 561 FFVSTTLGTTS-------------CYR-----------------------KSQGIEYADS 584
F+V+ T GTT C + K GIE A+S
Sbjct: 250 FYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANS 309
Query: 585 FNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL--QHGH-EGAIDYRHWGIPLSRR 641
N + + S + V ++ L + YL Q H + + D I R
Sbjct: 310 VTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH 369
Query: 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEI 685
K W + + G G + I + ELA+ K++ FE+
Sbjct: 370 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM 413
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 35/250 (14%)
Query: 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKF 76
HPRF +G + + L+ F++ +P +E I L + + +G K
Sbjct: 92 HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK- 150
Query: 77 LMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDE 136
G +P GG I ++ +I+ + K P V
Sbjct: 151 -----DGDGIFSP---------------------GGAISNMYSIMA---ARYKYFPEVKT 181
Query: 137 GVL--LSKLMAYCSKEAHSCVEKA-AMMAFV--RLKILEPDDKNSLRGATLRQVMQQDET 191
+ + KL+ + S+++H ++KA A + F + +++ +++ + A + + +
Sbjct: 182 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQ 241
Query: 192 MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251
GY+PF+V+ T GTT +FD + EI + +++++WLHVD A+ G + + R +NG
Sbjct: 242 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI 301
Query: 252 TSFDNLHLSP 261
+++ +P
Sbjct: 302 ERANSVTWNP 311
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 9/175 (5%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+++WLHVD A+ G + + R +NGIE A+S N + + S + V ++ L
Sbjct: 274 YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQ 333
Query: 391 SALVVDPLYL---QHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
+ YL ++ + D I R K W + + G G + I + E
Sbjct: 334 GCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 393
Query: 448 LAKLFEGKVRRDPRFE-ISNDVRSSASECIFVCMLAARA-----QAISKLKKIHP 496
LA+ K++ FE + N + C + + R Q KL K+ P
Sbjct: 394 LAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAP 448
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 42/224 (18%)
Query: 504 LSKLMAYCSKEAHSCVEKA-AMMAFV--RLKILEPDDKNSLRGATLRQVMQQDETMGYIP 560
+ KL+ + S+++H ++KA A + F + +++ +++ + A + + + GY+P
Sbjct: 187 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVP 246
Query: 561 FFVSTTLGTTS-------------CYR-----------------------KSQGIEYADS 584
F+V+ T GTT C + K GIE A+S
Sbjct: 247 FYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANS 306
Query: 585 FNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL---QHGHEGAIDYRHWGIPLSRR 641
N + + S + V ++ L + YL ++ + D I R
Sbjct: 307 VTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRH 366
Query: 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEI 685
K W + + G G + I + ELA+ K++ FE+
Sbjct: 367 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM 410
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 94/225 (41%), Gaps = 26/225 (11%)
Query: 16 QHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEK 75
QHP A+ + P+V A+ A+ SW + S T +E V++WL L EK
Sbjct: 99 QHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSATYVEQKVVNWLCDKYDLSEK 158
Query: 76 FLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD 135
G + + + D++ L G IQ + + + D
Sbjct: 159 ADGIFTSGGTQSNQXGLXL-ARDWIA-----DKLSGHSIQKL-----------GLPDYAD 201
Query: 136 EGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN---SLRGATLRQVMQQDETM 192
KL CSK++H V+K+A + K + D N + L +V+ Q +
Sbjct: 202 ------KLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAE 255
Query: 193 GYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237
G IPF + T GTT + D+L I A + D W HVDGAY G+
Sbjct: 256 GLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGGA 300
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Query: 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS 391
D W HVDGAY G + I + + G+E A S +V+ +K L V D+
Sbjct: 288 DXWXHVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-K 345
Query: 392 ALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 451
L+ YL H+ + I ++RF +LK++ + G L
Sbjct: 346 FLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLE 405
Query: 452 FEGKVRRDPRFEI 464
+R + +FE+
Sbjct: 406 VADXIRTNDQFEL 418
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN---SLRGATLRQVMQQDETMGYIPFF 562
KL CSK++H V+K+A + K + D N + L +V+ Q + G IPF
Sbjct: 202 KLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFA 261
Query: 563 VSTTLGTT-----------------------------------SCYRKSQGIEYADSFNV 587
+ T GTT S + +G+E A S +V
Sbjct: 262 IVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGGALILSSHKSRLKGVERAHSISV 321
Query: 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647
+ +K L V D+ L+ YL H+ + I ++RF +LK+
Sbjct: 322 DFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDELPNLVDKSIATTKRFDALKV 380
Query: 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD 707
+ + G L +R + +FE+ + L V FR E + +
Sbjct: 381 FXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFELLAEPSLSTVLFRATHETADLDE 440
Query: 708 QNNRKLLE 715
N LE
Sbjct: 441 LNKALRLE 448
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 181 TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFI 240
T+ + +D Y + GTT + DN+ E+ +AKE ++++HVD A+ G
Sbjct: 157 TIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVI- 215
Query: 241 CPEFRPFMNGK 251
PF++ K
Sbjct: 216 -----PFLDDK 221
>pdb|3UJH|A Chain A, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
Isomerase From Toxoplasma Gondii
pdb|3UJH|B Chain B, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
Isomerase From Toxoplasma Gondii
Length = 567
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 382 WVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 426
WV RY +TSA+ + PL LQ+G++ A ++ + + F++ +L
Sbjct: 277 WVGGRYSVTSAVGILPLALQYGYDVAQEFLNGAHAMDVHFKTAEL 321
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 603 WVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647
WV RY +TSA+ + PL LQ+G++ A ++ + + F++ +L
Sbjct: 277 WVGGRYSVTSAVGILPLALQYGYDVAQEFLNGAHAMDVHFKTAEL 321
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 766 LRSENNLIADHPLQLGLV-CFRLRSENNVIADQNNRKLLEDINASGRLHMVPASFELQER 824
L + N + HP LV C L S N V AD N ++ + G +V + ++QE+
Sbjct: 182 LGTATNYVRAHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEK 241
Query: 825 KRKDDLAYKRSF 836
+ + SF
Sbjct: 242 LEPGKVVVRSSF 253
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 766 LRSENNLIADHPLQLGLV-CFRLRSENNVIADQNNRKLLEDINASGRLHMVPASFELQER 824
L + N + HP LV C L S N V AD N ++ + G +V + ++QE+
Sbjct: 182 LGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEK 241
Query: 825 KRKDDLAYKRSF 836
+ + SF
Sbjct: 242 LEPGKVVVRSSF 253
>pdb|3VE1|A Chain A, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|C Chain C, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE2|A Chain A, The 2.1 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis
pdb|3VE2|B Chain B, The 2.1 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis
Length = 658
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA----TTPNDIDMNIEDYMTPA 103
+W +E++ DW +A GLP K P + K+ T D D+ Y+TP+
Sbjct: 18 NWYPGAEESEVKLNESDW--EATGLPTKPKELPKRQKSVIEKVETDGDSDIYSSPYLTPS 75
Query: 104 N-QPQSLGGGVIQ 115
N Q S G GV Q
Sbjct: 76 NHQNGSAGNGVNQ 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,679,139
Number of Sequences: 62578
Number of extensions: 1042505
Number of successful extensions: 2561
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2468
Number of HSP's gapped (non-prelim): 62
length of query: 891
length of database: 14,973,337
effective HSP length: 107
effective length of query: 784
effective length of database: 8,277,491
effective search space: 6489552944
effective search space used: 6489552944
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)