Query psy852
Match_columns 891
No_of_seqs 390 out of 3349
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:02:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0628|consensus 100.0 4E-69 8.6E-74 589.4 30.1 404 4-765 60-475 (511)
2 PLN02590 probable tyrosine dec 100.0 5.2E-68 1.1E-72 618.3 41.2 405 4-760 117-531 (539)
3 PLN02880 tyrosine decarboxylas 100.0 4.4E-63 9.6E-68 575.7 38.2 406 3-760 68-483 (490)
4 PF00282 Pyridoxal_deC: Pyrido 100.0 9.5E-61 2.1E-65 539.3 29.0 335 3-469 25-364 (373)
5 TIGR03799 NOD_PanD_pyr putativ 100.0 1.6E-57 3.6E-62 530.6 38.4 399 3-755 75-519 (522)
6 TIGR03811 tyr_de_CO2_Ent tyros 100.0 2.7E-56 5.8E-61 524.5 29.7 364 3-481 68-500 (608)
7 KOG0629|consensus 100.0 2.4E-54 5.3E-59 468.2 17.6 342 5-487 89-438 (510)
8 PLN02263 serine decarboxylase 100.0 2.8E-48 6E-53 443.1 29.2 307 3-481 81-397 (470)
9 COG0076 GadB Glutamate decarbo 100.0 1.9E-47 4E-52 439.3 29.1 327 7-482 51-379 (460)
10 TIGR01788 Glu-decarb-GAD gluta 100.0 9.2E-45 2E-49 415.7 34.8 377 12-760 37-428 (431)
11 PLN03032 serine decarboxylase; 100.0 4.1E-42 8.9E-47 386.7 26.2 291 16-467 22-321 (374)
12 PRK02769 histidine decarboxyla 100.0 3E-40 6.6E-45 373.4 29.1 299 16-480 20-326 (380)
13 PF00282 Pyridoxal_deC: Pyrido 100.0 2.8E-39 6.1E-44 364.9 23.0 255 439-699 75-373 (373)
14 KOG0629|consensus 100.0 2.2E-35 4.9E-40 320.9 17.8 286 468-759 164-507 (510)
15 TIGR03811 tyr_de_CO2_Ent tyros 100.0 7.7E-34 1.7E-38 334.8 31.2 272 443-718 123-524 (608)
16 PLN02263 serine decarboxylase 100.0 9.7E-34 2.1E-38 323.8 27.0 265 444-759 134-441 (470)
17 COG0076 GadB Glutamate decarbo 100.0 4.9E-34 1.1E-38 328.5 23.4 246 440-701 98-382 (460)
18 cd06450 DOPA_deC_like DOPA dec 100.0 6E-33 1.3E-37 308.5 31.4 187 20-236 1-189 (345)
19 COG1104 NifS Cysteine sulfinat 100.0 4.2E-31 9.2E-36 292.3 29.2 173 18-234 2-180 (386)
20 PLN03032 serine decarboxylase; 100.0 5.5E-31 1.2E-35 296.7 25.3 261 446-757 69-372 (374)
21 KOG0628|consensus 100.0 3.9E-31 8.5E-36 291.0 17.1 292 441-842 121-448 (511)
22 PRK02769 histidine decarboxyla 100.0 5.7E-29 1.2E-33 281.7 26.8 263 445-759 67-370 (380)
23 PLN02590 probable tyrosine dec 100.0 4.1E-29 9E-34 292.2 19.5 290 445-841 172-508 (539)
24 PLN02880 tyrosine decarboxylas 99.9 2E-26 4.3E-31 268.9 20.2 290 444-841 123-460 (490)
25 KOG1383|consensus 99.9 1E-25 2.2E-30 249.3 22.9 282 36-469 98-383 (491)
26 COG0520 csdA Selenocysteine ly 99.9 4.8E-24 1E-28 243.0 33.7 168 19-234 24-201 (405)
27 PRK05367 glycine dehydrogenase 99.9 2.4E-22 5.1E-27 248.5 48.7 242 506-762 590-876 (954)
28 TIGR03799 NOD_PanD_pyr putativ 99.9 4E-24 8.7E-29 250.5 25.2 260 465-816 161-482 (522)
29 PRK13520 L-tyrosine decarboxyl 99.9 1.4E-22 2.9E-27 227.8 34.2 172 19-238 23-194 (371)
30 TIGR03812 tyr_de_CO2_Arch tyro 99.9 1.4E-21 3E-26 219.9 36.3 186 7-238 11-196 (373)
31 TIGR00461 gcvP glycine dehydro 99.9 3.5E-21 7.5E-26 234.6 35.5 164 30-234 498-667 (939)
32 KOG1383|consensus 99.9 1.3E-21 2.9E-26 216.9 26.1 289 443-771 120-452 (491)
33 PLN02414 glycine dehydrogenase 99.9 1.4E-17 3E-22 205.7 49.0 244 507-762 617-908 (993)
34 TIGR03402 FeS_nifS cysteine de 99.8 1.6E-18 3.4E-23 196.2 34.5 168 20-234 2-175 (379)
35 PRK09295 bifunctional cysteine 99.8 3.4E-18 7.5E-23 195.5 33.3 170 19-234 25-203 (406)
36 PRK05367 glycine dehydrogenase 99.8 9.6E-19 2.1E-23 216.6 28.6 279 17-459 500-793 (954)
37 TIGR01788 Glu-decarb-GAD gluta 99.8 5.1E-19 1.1E-23 203.5 24.1 159 447-617 84-287 (431)
38 KOG1549|consensus 99.8 3.3E-19 7.1E-24 198.8 20.6 177 13-234 39-220 (428)
39 PLN02651 cysteine desulfurase 99.8 1.5E-18 3.2E-23 195.7 25.0 277 20-467 2-287 (364)
40 PRK10874 cysteine sulfinate de 99.8 2E-17 4.3E-22 188.8 34.4 171 18-234 20-199 (401)
41 TIGR01979 sufS cysteine desulf 99.8 3.2E-17 6.9E-22 187.0 34.9 170 19-234 20-198 (403)
42 cd06453 SufS_like Cysteine des 99.8 2.2E-17 4.8E-22 186.0 32.9 170 20-235 2-179 (373)
43 TIGR03392 FeS_syn_CsdA cystein 99.8 2.3E-17 5.1E-22 188.0 32.9 172 18-235 17-197 (398)
44 TIGR03403 nifS_epsilon cystein 99.8 7.4E-17 1.6E-21 182.9 36.1 172 20-235 2-180 (382)
45 TIGR03531 selenium_SpcS O-phos 99.8 3.1E-18 6.7E-23 196.8 22.8 240 51-459 99-344 (444)
46 PLN02855 Bifunctional selenocy 99.8 1.1E-16 2.4E-21 184.2 32.2 171 18-234 33-212 (424)
47 TIGR02006 IscS cysteine desulf 99.7 1.5E-16 3.3E-21 181.9 24.6 278 18-467 4-290 (402)
48 PRK04366 glycine dehydrogenase 99.7 2.8E-16 6.1E-21 183.9 25.2 281 19-459 71-368 (481)
49 PRK02948 cysteine desulfurase; 99.7 3.3E-15 7.3E-20 169.2 33.2 170 19-234 2-177 (381)
50 PF00266 Aminotran_5: Aminotra 99.7 2.8E-16 6.1E-21 177.4 24.2 287 20-467 2-302 (371)
51 TIGR03235 DNA_S_dndA cysteine 99.7 3.9E-16 8.4E-21 175.1 24.5 278 20-467 1-287 (353)
52 TIGR01814 kynureninase kynuren 99.7 3.9E-15 8.4E-20 170.6 32.3 89 144-235 115-211 (406)
53 PLN02724 Molybdenum cofactor s 99.7 1.7E-15 3.8E-20 187.2 30.9 164 18-223 35-220 (805)
54 TIGR01977 am_tr_V_EF2568 cyste 99.7 1.2E-15 2.5E-20 172.2 25.6 204 144-467 88-297 (376)
55 TIGR01976 am_tr_V_VC1184 cyste 99.7 2.8E-14 6.1E-19 162.4 33.4 169 19-234 19-195 (397)
56 PRK14012 cysteine desulfurase; 99.7 8.3E-15 1.8E-19 167.7 24.5 172 18-235 4-184 (404)
57 PLN02651 cysteine desulfurase 99.7 1.1E-14 2.5E-19 164.2 25.2 264 443-749 42-364 (364)
58 cd06451 AGAT_like Alanine-glyo 99.7 9.5E-14 2.1E-18 155.6 30.9 136 51-234 26-163 (356)
59 PLN02414 glycine dehydrogenase 99.6 1.1E-14 2.4E-19 180.3 25.1 248 55-459 566-825 (993)
60 TIGR01977 am_tr_V_EF2568 cyste 99.6 5.4E-14 1.2E-18 158.6 28.7 277 448-757 49-375 (376)
61 TIGR02006 IscS cysteine desulf 99.6 5.1E-14 1.1E-18 161.2 26.6 274 444-763 47-379 (402)
62 PRK04366 glycine dehydrogenase 99.6 4.6E-14 1E-18 165.4 25.8 268 470-760 136-447 (481)
63 PRK09331 Sep-tRNA:Cys-tRNA syn 99.6 1.2E-13 2.6E-18 157.5 25.9 273 26-467 29-307 (387)
64 KOG1549|consensus 99.6 3.1E-14 6.8E-19 159.3 17.8 289 437-760 78-417 (428)
65 KOG0630|consensus 99.6 3.4E-13 7.3E-18 149.6 25.3 318 504-847 229-681 (838)
66 PF00266 Aminotran_5: Aminotra 99.6 1.8E-13 4E-18 154.6 23.8 272 451-751 51-371 (371)
67 PRK00451 glycine dehydrogenase 99.6 1.2E-13 2.7E-18 160.1 22.4 162 15-230 67-238 (447)
68 cd00613 GDC-P Glycine cleavage 99.5 1.2E-12 2.6E-17 148.9 24.9 169 19-235 23-199 (398)
69 PTZ00094 serine hydroxymethylt 99.5 7.7E-13 1.7E-17 154.0 22.8 272 21-466 37-328 (452)
70 KOG0630|consensus 99.5 4.4E-12 9.5E-17 140.9 26.5 200 140-466 229-440 (838)
71 cd06452 SepCysS Sep-tRNA:Cys-t 99.5 3.8E-12 8.2E-17 143.5 25.8 92 144-235 85-179 (361)
72 TIGR03531 selenium_SpcS O-phos 99.5 1.8E-12 3.9E-17 149.4 22.2 251 468-758 128-443 (444)
73 PRK12566 glycine dehydrogenase 99.5 4.9E-12 1.1E-16 154.5 24.4 282 460-763 556-878 (954)
74 TIGR02326 transamin_PhnW 2-ami 99.4 5.8E-12 1.3E-16 141.9 21.8 252 53-466 31-289 (363)
75 PRK14012 cysteine desulfurase; 99.4 1.9E-11 4.2E-16 140.0 26.2 265 451-761 57-379 (404)
76 PRK03080 phosphoserine aminotr 99.4 1.9E-11 4.2E-16 139.1 25.8 109 648-760 258-372 (378)
77 PLN02409 serine--glyoxylate am 99.4 4.6E-12 1E-16 145.2 19.8 254 51-467 36-299 (401)
78 cd00613 GDC-P Glycine cleavage 99.4 1.6E-11 3.4E-16 139.9 22.6 235 508-755 110-398 (398)
79 COG2008 GLY1 Threonine aldolas 99.4 1.5E-11 3.3E-16 134.9 19.8 258 448-759 40-341 (342)
80 PTZ00094 serine hydroxymethylt 99.4 2.2E-11 4.7E-16 141.9 22.0 268 451-761 88-408 (452)
81 PRK12566 glycine dehydrogenase 99.4 2.4E-11 5.1E-16 148.6 22.7 198 142-465 591-798 (954)
82 PRK00451 glycine dehydrogenase 99.4 6.1E-11 1.3E-15 137.7 24.2 236 508-759 156-446 (447)
83 TIGR02326 transamin_PhnW 2-ami 99.4 1.8E-10 3.8E-15 129.9 26.6 278 451-759 43-360 (363)
84 PRK07179 hypothetical protein; 99.3 6.7E-10 1.5E-14 127.5 29.9 159 13-235 57-221 (407)
85 PRK09331 Sep-tRNA:Cys-tRNA syn 99.3 3.8E-10 8.3E-15 128.8 27.2 273 451-760 71-380 (387)
86 TIGR03301 PhnW-AepZ 2-aminoeth 99.3 1E-10 2.2E-15 130.5 21.8 254 53-467 27-285 (355)
87 PLN02721 threonine aldolase 99.3 2.4E-10 5.1E-15 127.7 23.9 246 468-759 60-350 (353)
88 TIGR03235 DNA_S_dndA cysteine 99.3 1.8E-10 4E-15 129.3 23.1 242 448-729 47-323 (353)
89 TIGR00461 gcvP glycine dehydro 99.3 1.6E-09 3.5E-14 133.4 32.6 246 506-763 578-869 (939)
90 KOG1368|consensus 99.3 6.6E-11 1.4E-15 125.7 16.7 257 448-758 61-365 (384)
91 TIGR03301 PhnW-AepZ 2-aminoeth 99.3 3.2E-10 6.8E-15 126.5 23.3 283 447-758 35-354 (355)
92 cd06450 DOPA_deC_like DOPA dec 99.3 3E-11 6.6E-16 134.6 12.7 264 446-757 41-344 (345)
93 cd00615 Orn_deC_like Ornithine 99.3 2.3E-10 5E-15 125.8 19.0 90 144-238 101-196 (294)
94 TIGR02539 SepCysS Sep-tRNA:Cys 99.2 1.7E-09 3.7E-14 122.7 26.5 92 144-235 92-186 (370)
95 PRK13479 2-aminoethylphosphona 99.2 3.8E-10 8.3E-15 127.3 20.9 252 52-466 32-290 (368)
96 cd06452 SepCysS Sep-tRNA:Cys-t 99.2 3.2E-09 6.9E-14 119.8 27.9 270 450-759 51-360 (361)
97 PRK13479 2-aminoethylphosphona 99.2 1.7E-09 3.8E-14 122.0 25.0 283 446-759 40-361 (368)
98 PLN02409 serine--glyoxylate am 99.2 2.7E-09 6E-14 122.4 26.5 279 451-759 50-370 (401)
99 cd06502 TA_like Low-specificit 99.2 1.1E-09 2.5E-14 121.5 20.0 257 447-757 36-337 (338)
100 COG1003 GcvP Glycine cleavage 99.2 5.2E-09 1.1E-13 116.6 24.5 299 442-761 104-447 (496)
101 cd00609 AAT_like Aspartate ami 99.2 2.9E-09 6.3E-14 117.6 22.9 161 30-238 13-178 (350)
102 PRK05937 8-amino-7-oxononanoat 99.2 1.6E-09 3.5E-14 122.9 21.2 174 11-235 5-183 (370)
103 PLN03226 serine hydroxymethylt 99.2 2.3E-09 4.9E-14 125.6 22.4 274 30-467 47-340 (475)
104 PLN02721 threonine aldolase 99.2 1.6E-09 3.4E-14 121.1 19.9 91 144-234 82-180 (353)
105 cd00616 AHBA_syn 3-amino-5-hyd 99.1 4.1E-09 8.8E-14 117.7 22.9 271 448-756 23-352 (352)
106 cd00611 PSAT_like Phosphoserin 99.1 1.9E-09 4.2E-14 121.7 20.4 271 451-758 52-353 (355)
107 cd06502 TA_like Low-specificit 99.1 6.7E-10 1.5E-14 123.3 16.3 89 144-234 73-168 (338)
108 cd00611 PSAT_like Phosphoserin 99.1 3.9E-10 8.5E-15 127.3 14.3 259 31-462 12-281 (355)
109 PRK00011 glyA serine hydroxyme 99.1 3.5E-09 7.6E-14 121.8 21.9 154 29-234 37-202 (416)
110 cd00616 AHBA_syn 3-amino-5-hyd 99.1 4.1E-09 9E-14 117.7 20.6 82 144-234 60-142 (352)
111 PRK13580 serine hydroxymethylt 99.1 2.1E-08 4.6E-13 116.5 26.4 64 164-234 193-257 (493)
112 PLN02271 serine hydroxymethylt 99.1 1E-08 2.3E-13 119.7 23.3 280 30-477 161-467 (586)
113 COG0520 csdA Selenocysteine ly 99.1 6.6E-09 1.4E-13 119.3 20.9 264 435-730 57-365 (405)
114 COG1104 NifS Cysteine sulfinat 99.1 1.6E-09 3.5E-14 121.3 15.1 286 435-760 35-376 (386)
115 PF01212 Beta_elim_lyase: Beta 99.1 2.6E-09 5.7E-14 117.4 16.2 157 26-234 4-167 (290)
116 PF01276 OKR_DC_1: Orn/Lys/Arg 99.1 3.1E-09 6.7E-14 121.3 17.2 135 60-241 69-213 (417)
117 cd01494 AAT_I Aspartate aminot 99.1 2.3E-09 5E-14 105.6 14.0 89 145-238 44-135 (170)
118 cd00378 SHMT Serine-glycine hy 99.0 1.3E-08 2.7E-13 116.4 21.6 163 20-234 21-198 (402)
119 TIGR02539 SepCysS Sep-tRNA:Cys 99.0 7.5E-08 1.6E-12 109.3 27.0 256 468-759 71-366 (370)
120 TIGR01437 selA_rel uncharacter 99.0 2.1E-08 4.6E-13 113.7 21.6 83 145-235 102-189 (363)
121 COG2008 GLY1 Threonine aldolas 99.0 2.1E-09 4.5E-14 118.2 12.8 148 36-234 15-172 (342)
122 COG1003 GcvP Glycine cleavage 99.0 2.9E-08 6.3E-13 110.8 21.2 248 55-465 107-368 (496)
123 TIGR01822 2am3keto_CoA 2-amino 99.0 4.5E-08 9.7E-13 111.5 23.0 87 144-235 124-210 (393)
124 cd06454 KBL_like KBL_like; thi 99.0 6.2E-08 1.4E-12 108.0 22.5 86 144-235 87-172 (349)
125 PRK08134 O-acetylhomoserine am 98.9 7E-08 1.5E-12 112.0 22.5 80 144-234 105-188 (433)
126 PRK13393 5-aminolevulinate syn 98.9 6.8E-07 1.5E-11 102.8 30.3 85 144-235 133-217 (406)
127 TIGR01437 selA_rel uncharacter 98.9 2.1E-07 4.6E-12 105.6 24.7 273 448-758 50-362 (363)
128 TIGR01821 5aminolev_synth 5-am 98.9 1.1E-06 2.4E-11 100.8 30.0 85 144-235 133-217 (402)
129 PRK05613 O-acetylhomoserine am 98.9 7.9E-08 1.7E-12 111.6 20.3 82 144-235 110-195 (437)
130 PRK05355 3-phosphoserine/phosp 98.9 2.8E-08 6.1E-13 112.7 16.1 234 506-759 94-356 (360)
131 TIGR02618 tyr_phenol_ly tyrosi 98.9 1.5E-07 3.2E-12 108.3 21.7 158 20-234 40-213 (450)
132 TIGR01364 serC_1 phosphoserine 98.9 8.4E-08 1.8E-12 108.4 19.5 279 438-759 35-346 (349)
133 PRK13520 L-tyrosine decarboxyl 98.9 2.3E-08 5E-13 112.6 14.3 268 447-759 63-369 (371)
134 PRK15029 arginine decarboxylas 98.8 1.1E-07 2.4E-12 115.8 19.9 100 144-244 247-360 (755)
135 COG0075 Serine-pyruvate aminot 98.8 2.3E-07 4.9E-12 104.8 20.6 252 50-466 31-290 (383)
136 PRK13034 serine hydroxymethylt 98.8 2.3E-07 4.9E-12 107.3 20.9 163 21-235 31-206 (416)
137 PLN03226 serine hydroxymethylt 98.8 5.9E-07 1.3E-11 105.5 24.3 254 470-761 107-419 (475)
138 PRK13238 tnaA tryptophanase/L- 98.8 2.5E-07 5.3E-12 108.3 21.1 87 145-234 119-220 (460)
139 TIGR03588 PseC UDP-4-keto-6-de 98.8 1.7E-06 3.6E-11 98.6 27.1 86 144-234 71-157 (380)
140 cd00609 AAT_like Aspartate ami 98.8 2E-07 4.3E-12 103.0 18.4 245 463-756 61-349 (350)
141 PRK08133 O-succinylhomoserine 98.8 2.5E-07 5.4E-12 106.1 19.5 79 145-234 103-185 (390)
142 PRK15399 lysine decarboxylase 98.8 6.8E-07 1.5E-11 108.1 23.8 96 144-244 237-343 (713)
143 PRK11658 UDP-4-amino-4-deoxy-L 98.8 1E-06 2.2E-11 100.6 24.2 83 144-235 75-158 (379)
144 TIGR01364 serC_1 phosphoserine 98.8 8.4E-08 1.8E-12 108.3 14.8 239 52-465 32-276 (349)
145 PRK13578 ornithine decarboxyla 98.8 1.7E-07 3.7E-12 113.3 17.9 99 144-244 216-330 (720)
146 PRK13237 tyrosine phenol-lyase 98.8 4E-07 8.6E-12 105.0 20.1 85 148-234 121-220 (460)
147 TIGR01366 serC_3 phosphoserine 98.8 1.5E-07 3.2E-12 106.8 16.5 262 29-466 14-287 (361)
148 PRK08361 aspartate aminotransf 98.8 5.9E-07 1.3E-11 102.6 21.4 158 32-237 49-211 (391)
149 TIGR01329 cysta_beta_ly_E cyst 98.7 1.7E-07 3.6E-12 107.0 16.5 81 144-235 87-171 (378)
150 PRK05355 3-phosphoserine/phosp 98.7 8.9E-08 1.9E-12 108.6 13.4 258 29-461 14-283 (360)
151 cd00614 CGS_like CGS_like: Cys 98.7 3E-07 6.5E-12 104.5 17.5 81 144-235 81-165 (369)
152 PRK07504 O-succinylhomoserine 98.7 7.3E-07 1.6E-11 102.5 20.7 79 145-234 107-189 (398)
153 PRK13580 serine hydroxymethylt 98.7 2.1E-06 4.5E-11 100.2 24.2 204 529-760 194-444 (493)
154 COG1103 Archaea-specific pyrid 98.7 3.5E-07 7.7E-12 96.6 15.0 93 142-234 100-195 (382)
155 TIGR03812 tyr_de_CO2_Arch tyro 98.7 2.2E-07 4.9E-12 104.8 14.8 271 447-757 63-372 (373)
156 PRK05958 8-amino-7-oxononanoat 98.7 2.2E-06 4.8E-11 96.8 22.4 84 144-235 125-208 (385)
157 TIGR01822 2am3keto_CoA 2-amino 98.7 4.9E-06 1.1E-10 94.8 25.2 254 450-760 90-388 (393)
158 PLN02509 cystathionine beta-ly 98.7 5.5E-07 1.2E-11 105.2 17.5 177 144-465 173-355 (464)
159 TIGR01325 O_suc_HS_sulf O-succ 98.7 1.2E-06 2.6E-11 100.1 19.7 80 145-235 96-179 (380)
160 TIGR01328 met_gam_lyase methio 98.7 8.4E-07 1.8E-11 101.8 18.5 79 145-234 101-183 (391)
161 TIGR03402 FeS_nifS cysteine de 98.6 5.1E-07 1.1E-11 102.5 16.4 271 448-761 47-372 (379)
162 PRK15400 lysine decarboxylase 98.6 8.7E-07 1.9E-11 107.2 19.1 97 144-244 237-343 (714)
163 TIGR01366 serC_3 phosphoserine 98.6 2.3E-06 5.1E-11 97.1 20.9 173 580-759 174-358 (361)
164 PRK06767 methionine gamma-lyas 98.6 2.2E-06 4.9E-11 98.1 20.9 80 144-234 102-185 (386)
165 PRK08776 cystathionine gamma-s 98.6 2E-06 4.3E-11 99.2 20.1 175 145-464 102-282 (405)
166 TIGR03588 PseC UDP-4-keto-6-de 98.6 6E-06 1.3E-10 94.1 23.7 263 469-758 50-379 (380)
167 PRK08064 cystathionine beta-ly 98.6 8.8E-07 1.9E-11 101.6 16.9 80 145-235 95-178 (390)
168 PRK06939 2-amino-3-ketobutyrat 98.6 3.7E-06 7.9E-11 95.6 21.7 87 144-235 128-214 (397)
169 cd06454 KBL_like KBL_like; thi 98.6 6.9E-06 1.5E-10 91.6 23.6 219 508-758 87-348 (349)
170 PRK07812 O-acetylhomoserine am 98.6 1.5E-06 3.2E-11 101.1 18.7 81 145-235 111-195 (436)
171 cd00378 SHMT Serine-glycine hy 98.6 3.8E-06 8.3E-11 96.1 21.9 246 471-759 89-383 (402)
172 PF00464 SHMT: Serine hydroxym 98.6 9.9E-07 2.1E-11 100.6 16.8 281 23-466 25-325 (399)
173 KOG1368|consensus 98.6 9.1E-08 2E-12 102.2 7.8 90 145-234 99-197 (384)
174 TIGR00474 selA seryl-tRNA(sec) 98.6 1E-06 2.2E-11 102.7 17.3 83 145-235 163-255 (454)
175 PRK08574 cystathionine gamma-s 98.6 1.5E-06 3.2E-11 99.6 18.1 81 144-235 94-177 (385)
176 COG0112 GlyA Glycine/serine hy 98.6 3.5E-06 7.5E-11 93.9 19.9 262 31-475 40-314 (413)
177 PLN02483 serine palmitoyltrans 98.6 7.9E-06 1.7E-10 96.5 24.4 87 144-235 187-280 (489)
178 PRK07811 cystathionine gamma-s 98.6 2.6E-06 5.6E-11 97.7 19.7 80 145-235 103-186 (388)
179 PRK13392 5-aminolevulinate syn 98.6 4.8E-06 1E-10 95.9 21.7 85 144-235 134-218 (410)
180 PRK08861 cystathionine gamma-s 98.6 2E-06 4.4E-11 98.5 18.5 81 144-235 94-178 (388)
181 PRK05968 hypothetical protein; 98.6 3.2E-06 7E-11 96.9 20.0 79 145-235 105-187 (389)
182 PRK08114 cystathionine beta-ly 98.6 1.5E-06 3.3E-11 99.6 17.1 81 144-235 103-189 (395)
183 PRK09064 5-aminolevulinate syn 98.5 7.8E-06 1.7E-10 93.9 22.6 86 143-235 133-218 (407)
184 PRK08249 cystathionine gamma-s 98.5 2.7E-06 5.9E-11 97.8 18.3 81 144-235 105-189 (398)
185 PRK05939 hypothetical protein; 98.5 3.4E-06 7.3E-11 97.1 18.9 80 145-235 89-171 (397)
186 PRK07810 O-succinylhomoserine 98.5 5.1E-06 1.1E-10 95.8 20.2 80 144-234 111-194 (403)
187 PRK13034 serine hydroxymethylt 98.5 7.4E-06 1.6E-10 94.8 21.4 245 469-759 96-390 (416)
188 PRK07503 methionine gamma-lyas 98.5 3.8E-06 8.2E-11 96.8 18.9 80 145-235 107-190 (403)
189 TIGR03403 nifS_epsilon cystein 98.5 4.1E-06 8.8E-11 95.3 19.0 273 451-761 50-375 (382)
190 PRK09028 cystathionine beta-ly 98.5 4.9E-06 1.1E-10 95.5 19.7 80 145-235 103-186 (394)
191 TIGR01324 cysta_beta_ly_B cyst 98.5 3.8E-06 8.2E-11 96.0 18.7 80 145-235 92-175 (377)
192 PRK07050 cystathionine beta-ly 98.5 2.8E-06 6.2E-11 97.6 17.7 80 144-234 106-189 (394)
193 PRK00011 glyA serine hydroxyme 98.5 1.5E-05 3.2E-10 91.9 23.5 227 508-759 113-387 (416)
194 PRK06108 aspartate aminotransf 98.5 7.8E-06 1.7E-10 92.7 20.7 87 145-237 111-203 (382)
195 cd00617 Tnase_like Tryptophana 98.5 6.9E-06 1.5E-10 95.3 20.4 84 149-234 97-195 (431)
196 PRK05764 aspartate aminotransf 98.5 1.3E-05 2.7E-10 91.6 22.4 87 144-236 117-208 (393)
197 PRK08248 O-acetylhomoserine am 98.5 1.1E-05 2.4E-10 93.8 21.6 81 144-235 105-189 (431)
198 PRK04311 selenocysteine syntha 98.5 3.1E-06 6.8E-11 98.9 16.7 83 145-235 168-260 (464)
199 PRK05994 O-acetylhomoserine am 98.5 9.4E-06 2E-10 94.3 20.4 80 145-235 105-188 (427)
200 PRK07671 cystathionine beta-ly 98.4 5.7E-06 1.2E-10 94.6 18.1 80 145-235 91-174 (377)
201 PRK10534 L-threonine aldolase; 98.4 7.4E-06 1.6E-10 91.3 17.9 88 145-234 76-169 (333)
202 PRK06176 cystathionine gamma-s 98.4 5.7E-06 1.2E-10 94.6 17.0 80 145-235 91-174 (380)
203 PRK08045 cystathionine gamma-s 98.4 8.3E-06 1.8E-10 93.5 18.3 177 144-465 93-275 (386)
204 PRK05937 8-amino-7-oxononanoat 98.4 5.5E-05 1.2E-09 86.0 24.7 216 507-760 96-349 (370)
205 TIGR01825 gly_Cac_T_rel pyrido 98.4 3.4E-05 7.4E-10 87.6 22.7 85 144-235 119-203 (385)
206 PRK08247 cystathionine gamma-s 98.4 1.9E-05 4.2E-10 89.8 20.2 80 145-235 93-176 (366)
207 PF01212 Beta_elim_lyase: Beta 98.4 3.9E-07 8.5E-12 100.3 6.2 208 446-693 32-282 (290)
208 TIGR01141 hisC histidinol-phos 98.4 1.7E-05 3.6E-10 88.9 19.3 85 145-235 98-184 (346)
209 TIGR01141 hisC histidinol-phos 98.4 1.7E-05 3.6E-10 88.9 19.3 249 449-756 60-346 (346)
210 PLN03227 serine palmitoyltrans 98.4 5.3E-05 1.2E-09 87.0 23.5 87 144-235 84-178 (392)
211 PRK05958 8-amino-7-oxononanoat 98.4 6.9E-05 1.5E-09 84.8 23.9 216 508-758 125-384 (385)
212 PLN02822 serine palmitoyltrans 98.3 5.9E-05 1.3E-09 89.0 23.8 87 144-235 195-285 (481)
213 PRK06939 2-amino-3-ketobutyrat 98.3 0.00012 2.5E-09 83.3 25.6 221 507-760 127-392 (397)
214 PLN02271 serine hydroxymethylt 98.3 6.8E-05 1.5E-09 88.4 23.6 290 435-761 189-540 (586)
215 PRK11658 UDP-4-amino-4-deoxy-L 98.3 8E-05 1.7E-09 85.2 23.9 281 446-759 36-377 (379)
216 TIGR02617 tnaA_trp_ase tryptop 98.3 5.3E-06 1.1E-10 95.0 13.8 83 150-234 129-226 (467)
217 KOG2862|consensus 98.3 1.6E-05 3.5E-10 85.9 16.5 150 36-233 30-181 (385)
218 TIGR02080 O_succ_thio_ly O-suc 98.3 1.4E-05 3.1E-10 91.5 17.4 178 144-466 92-275 (382)
219 PRK06234 methionine gamma-lyas 98.3 2.4E-05 5.2E-10 90.1 19.4 79 145-234 106-190 (400)
220 COG1103 Archaea-specific pyrid 98.3 6.5E-05 1.4E-09 79.9 20.6 260 468-759 81-378 (382)
221 PLN02822 serine palmitoyltrans 98.3 0.00017 3.7E-09 85.1 26.8 272 443-762 154-478 (481)
222 PRK10534 L-threonine aldolase; 98.3 2.2E-05 4.7E-10 87.5 18.4 238 468-759 54-331 (333)
223 PLN02242 methionine gamma-lyas 98.3 2.1E-05 4.6E-10 91.1 18.7 80 145-234 118-202 (418)
224 PRK05957 aspartate aminotransf 98.3 9.6E-05 2.1E-09 84.6 24.0 88 144-237 115-205 (389)
225 TIGR00858 bioF 8-amino-7-oxono 98.3 8.6E-05 1.9E-09 83.0 23.1 215 508-756 102-360 (360)
226 KOG2040|consensus 98.3 8E-05 1.7E-09 86.7 21.5 288 436-759 578-916 (1001)
227 TIGR01326 OAH_OAS_sulfhy OAH/O 98.3 9.4E-05 2E-09 85.8 22.7 80 145-235 99-182 (418)
228 PRK09064 5-aminolevulinate syn 98.3 0.00024 5.1E-09 81.7 25.6 262 445-760 93-396 (407)
229 TIGR00858 bioF 8-amino-7-oxono 98.3 0.0001 2.2E-09 82.3 22.1 85 144-235 102-186 (360)
230 COG3844 Kynureninase [Amino ac 98.2 4.8E-05 1E-09 82.8 18.0 270 444-760 77-401 (407)
231 PRK06084 O-acetylhomoserine am 98.2 0.00011 2.4E-09 85.3 22.6 80 145-235 100-183 (425)
232 PRK08363 alanine aminotransfer 98.2 0.0001 2.2E-09 84.5 21.9 87 144-236 119-210 (398)
233 PRK13392 5-aminolevulinate syn 98.2 0.00024 5.3E-09 81.8 24.7 262 445-759 93-395 (410)
234 PRK07269 cystathionine gamma-s 98.2 1.6E-05 3.5E-10 90.4 14.6 229 177-552 124-360 (364)
235 PLN02483 serine palmitoyltrans 98.2 0.0005 1.1E-08 81.4 27.5 223 508-760 187-465 (489)
236 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.2 0.00015 3.3E-09 82.7 22.4 83 144-235 73-156 (375)
237 PRK06460 hypothetical protein; 98.2 5.2E-05 1.1E-09 86.6 18.5 68 157-235 103-170 (376)
238 KOG2040|consensus 98.2 4.7E-05 1E-09 88.5 17.6 90 141-234 629-719 (1001)
239 PRK15407 lipopolysaccharide bi 98.2 0.00021 4.5E-09 83.5 23.4 83 143-234 112-195 (438)
240 cd00610 OAT_like Acetyl ornith 98.2 0.00014 2.9E-09 83.5 21.6 163 29-237 53-237 (413)
241 cd00610 OAT_like Acetyl ornith 98.2 0.00022 4.7E-09 81.8 23.1 271 444-758 80-412 (413)
242 COG0399 WecE Predicted pyridox 98.2 0.00018 3.8E-09 81.8 21.7 82 144-234 76-158 (374)
243 PRK06434 cystathionine gamma-l 98.2 4.1E-05 8.8E-10 87.8 16.7 158 160-465 125-284 (384)
244 PF01041 DegT_DnrJ_EryC1: DegT 98.2 9.9E-05 2.2E-09 83.8 19.7 82 144-234 67-149 (363)
245 PRK09295 bifunctional cysteine 98.2 7.7E-06 1.7E-10 94.0 10.8 279 448-759 72-402 (406)
246 TIGR01825 gly_Cac_T_rel pyrido 98.2 0.00028 6.1E-09 80.1 23.3 219 508-759 119-379 (385)
247 PRK02948 cysteine desulfurase; 98.2 9E-05 2E-09 84.3 19.2 272 446-760 45-373 (381)
248 PRK08912 hypothetical protein; 98.2 0.00041 8.9E-09 79.2 24.5 87 144-236 113-203 (387)
249 PLN02452 phosphoserine transam 98.1 4.3E-05 9.2E-10 87.0 16.0 264 21-462 9-288 (365)
250 PRK07582 cystathionine gamma-l 98.1 6.4E-05 1.4E-09 85.6 17.1 77 144-234 91-171 (366)
251 PF02347 GDC-P: Glycine cleava 98.1 0.00018 3.9E-09 82.9 20.1 218 508-755 156-429 (429)
252 PLN03227 serine palmitoyltrans 98.1 0.00092 2E-08 76.9 26.2 231 507-761 83-382 (392)
253 PRK06207 aspartate aminotransf 98.1 0.0012 2.6E-08 76.2 26.8 160 29-235 54-221 (405)
254 cd06453 SufS_like Cysteine des 98.1 1.4E-05 3E-10 90.4 10.6 274 447-755 47-373 (373)
255 PRK06108 aspartate aminotransf 98.1 0.00046 9.9E-09 78.3 23.0 245 463-759 86-380 (382)
256 PRK13238 tnaA tryptophanase/L- 98.1 0.0008 1.7E-08 79.0 25.2 250 468-759 98-431 (460)
257 PRK07777 aminotransferase; Val 98.1 0.00066 1.4E-08 77.5 23.7 143 48-237 56-204 (387)
258 PRK09082 methionine aminotrans 98.1 5.6E-05 1.2E-09 86.4 15.0 142 49-237 63-208 (386)
259 TIGR01814 kynureninase kynuren 98.1 8.1E-05 1.8E-09 85.7 16.4 273 454-759 80-405 (406)
260 TIGR01979 sufS cysteine desulf 98.1 2.4E-05 5.1E-10 89.6 11.8 277 450-760 69-400 (403)
261 PRK05968 hypothetical protein; 98.0 0.0003 6.6E-09 80.8 20.8 178 508-721 104-326 (389)
262 TIGR03392 FeS_syn_CsdA cystein 98.0 2.2E-05 4.8E-10 89.9 11.3 284 445-760 61-394 (398)
263 PLN02656 tyrosine transaminase 98.0 8.8E-05 1.9E-09 85.5 16.3 89 144-238 122-215 (409)
264 PRK06225 aspartate aminotransf 98.0 0.00056 1.2E-08 77.9 22.5 255 454-760 77-375 (380)
265 COG0156 BioF 7-keto-8-aminopel 98.0 0.00037 8.1E-09 79.6 20.5 171 10-235 39-211 (388)
266 PRK08134 O-acetylhomoserine am 98.0 0.00043 9.3E-09 80.7 21.5 216 468-719 84-365 (433)
267 PRK08361 aspartate aminotransf 98.0 0.00021 4.5E-09 81.8 18.7 245 463-759 95-388 (391)
268 PF01041 DegT_DnrJ_EryC1: DegT 98.0 0.00021 4.5E-09 81.2 18.3 258 468-756 45-363 (363)
269 PLN02955 8-amino-7-oxononanoat 98.0 0.0072 1.6E-07 70.9 31.0 89 142-238 200-292 (476)
270 PF00155 Aminotran_1_2: Aminot 98.0 0.00053 1.1E-08 77.1 21.3 170 29-238 19-194 (363)
271 PRK00950 histidinol-phosphate 98.0 8.2E-05 1.8E-09 83.8 14.8 87 145-237 114-200 (361)
272 PLN00145 tyrosine/nicotianamin 98.0 0.0001 2.2E-09 85.8 15.8 87 145-237 144-235 (430)
273 PRK05764 aspartate aminotransf 98.0 0.00098 2.1E-08 76.1 23.7 250 463-759 93-389 (393)
274 PRK06702 O-acetylhomoserine am 98.0 0.00036 7.8E-09 81.2 20.1 82 144-235 102-187 (432)
275 PRK03244 argD acetylornithine 98.0 0.0011 2.3E-08 76.2 23.6 146 582-760 245-393 (398)
276 TIGR02379 ECA_wecE TDP-4-keto- 98.0 0.00014 3E-09 83.2 16.1 83 144-235 73-156 (376)
277 PLN02724 Molybdenum cofactor s 98.0 1.2E-05 2.6E-10 100.4 8.0 292 442-759 76-486 (805)
278 PF00464 SHMT: Serine hydroxym 98.0 0.00043 9.4E-09 79.3 19.8 242 470-755 93-399 (399)
279 TIGR01265 tyr_nico_aTase tyros 98.0 0.00014 2.9E-09 83.8 16.1 88 145-238 123-215 (403)
280 PRK08960 hypothetical protein; 98.0 0.00012 2.7E-09 83.5 15.4 88 144-237 118-210 (387)
281 PRK07505 hypothetical protein; 98.0 0.00091 2E-08 76.9 22.6 80 144-234 137-218 (402)
282 cd06451 AGAT_like Alanine-glyo 98.0 3.5E-05 7.6E-10 86.6 10.7 276 449-759 38-355 (356)
283 PRK04870 histidinol-phosphate 98.0 0.00067 1.5E-08 76.5 21.1 247 452-758 72-355 (356)
284 PRK07582 cystathionine gamma-l 97.9 0.00071 1.5E-08 77.1 21.1 148 581-757 183-365 (366)
285 PRK05387 histidinol-phosphate 97.9 0.0021 4.6E-08 72.2 24.7 238 463-759 79-351 (353)
286 PRK01688 histidinol-phosphate 97.9 0.00013 2.8E-09 82.5 14.6 247 451-756 65-351 (351)
287 PF02347 GDC-P: Glycine cleava 97.9 0.0015 3.2E-08 75.5 23.2 72 144-230 156-231 (429)
288 cd00614 CGS_like CGS_like: Cys 97.9 0.0004 8.6E-09 79.1 18.5 198 468-718 60-307 (369)
289 COG0399 WecE Predicted pyridox 97.9 0.0011 2.3E-08 75.4 21.6 264 468-759 54-371 (374)
290 PRK10874 cysteine sulfinate de 97.9 7.7E-05 1.7E-09 85.5 12.6 283 443-760 62-397 (401)
291 PRK07682 hypothetical protein; 97.9 0.001 2.3E-08 75.6 21.7 87 144-236 107-198 (378)
292 PRK15407 lipopolysaccharide bi 97.9 0.0018 3.9E-08 75.7 23.9 289 447-759 67-434 (438)
293 PRK05967 cystathionine beta-ly 97.9 0.00082 1.8E-08 77.4 20.7 82 144-236 105-190 (395)
294 PRK11706 TDP-4-oxo-6-deoxy-D-g 97.9 0.002 4.3E-08 73.6 23.8 259 468-759 51-374 (375)
295 PRK05964 adenosylmethionine--8 97.9 0.0014 3.1E-08 76.0 22.8 156 582-760 262-421 (423)
296 PRK07568 aspartate aminotransf 97.9 0.0023 5.1E-08 73.1 24.2 87 145-237 115-207 (397)
297 TIGR03540 DapC_direct LL-diami 97.9 0.004 8.7E-08 70.9 25.4 87 144-236 117-208 (383)
298 PLN02855 Bifunctional selenocy 97.9 7.7E-05 1.7E-09 86.3 11.4 281 449-761 82-418 (424)
299 PRK05613 O-acetylhomoserine am 97.8 0.0007 1.5E-08 79.0 19.1 196 508-719 110-374 (437)
300 PRK07550 hypothetical protein; 97.8 0.00038 8.3E-09 79.4 16.6 87 145-237 117-208 (386)
301 PRK14807 histidinol-phosphate 97.8 0.0034 7.4E-08 70.8 24.0 238 463-758 78-349 (351)
302 TIGR01140 L_thr_O3P_dcar L-thr 97.8 0.00063 1.4E-08 76.2 17.9 79 145-237 89-170 (330)
303 PRK02731 histidinol-phosphate 97.8 0.0018 3.9E-08 73.2 21.8 215 508-759 110-364 (367)
304 PRK12414 putative aminotransfe 97.8 0.00019 4.2E-09 82.0 13.9 85 145-235 117-205 (384)
305 PRK07309 aromatic amino acid a 97.8 0.00048 1E-08 79.0 17.1 90 145-237 118-211 (391)
306 COG0075 Serine-pyruvate aminot 97.8 0.0045 9.8E-08 70.5 24.3 230 519-760 95-362 (383)
307 TIGR02379 ECA_wecE TDP-4-keto- 97.8 0.0029 6.2E-08 72.5 23.1 276 447-759 35-375 (376)
308 PRK08064 cystathionine beta-ly 97.8 0.0015 3.2E-08 75.2 20.9 215 509-758 95-383 (390)
309 PRK07337 aminotransferase; Val 97.8 0.00034 7.4E-09 79.9 15.6 87 144-236 116-207 (388)
310 PF05889 SLA_LP_auto_ag: Solub 97.8 0.0013 2.8E-08 74.5 19.6 245 474-759 86-388 (389)
311 PRK00950 histidinol-phosphate 97.8 0.0019 4.1E-08 72.8 20.8 212 508-759 113-360 (361)
312 PF05889 SLA_LP_auto_ag: Solub 97.8 0.00025 5.4E-09 80.1 13.2 87 145-234 104-194 (389)
313 PRK14807 histidinol-phosphate 97.8 0.0045 9.9E-08 69.8 23.7 87 145-236 103-189 (351)
314 TIGR01885 Orn_aminotrans ornit 97.8 0.0071 1.5E-07 69.6 25.6 265 444-759 80-400 (401)
315 PRK06225 aspartate aminotransf 97.8 0.00023 4.9E-09 81.1 13.2 86 145-236 110-201 (380)
316 PLN00175 aminotransferase fami 97.8 0.00062 1.3E-08 78.8 16.9 87 145-237 142-232 (413)
317 TIGR01365 serC_2 phosphoserine 97.8 0.00055 1.2E-08 78.2 16.1 259 29-466 14-289 (374)
318 PRK08861 cystathionine gamma-s 97.8 0.0016 3.4E-08 75.0 19.8 185 468-700 73-307 (388)
319 PRK00854 rocD ornithine--oxo-a 97.7 0.0064 1.4E-07 69.8 24.8 89 662-759 309-399 (401)
320 PLN02452 phosphoserine transam 97.7 0.00021 4.5E-09 81.5 12.3 163 583-759 192-361 (365)
321 PRK07681 aspartate aminotransf 97.7 0.0076 1.6E-07 69.3 25.3 87 144-236 119-210 (399)
322 PLN03026 histidinol-phosphate 97.7 0.0045 9.8E-08 70.8 23.3 252 451-758 94-379 (380)
323 PRK07908 hypothetical protein; 97.7 0.002 4.3E-08 72.6 20.0 233 463-759 77-345 (349)
324 COG2873 MET17 O-acetylhomoseri 97.7 0.0014 3.1E-08 73.0 17.9 71 156-237 119-189 (426)
325 PF01053 Cys_Met_Meta_PP: Cys/ 97.7 0.0015 3.2E-08 75.1 18.9 175 145-463 97-278 (386)
326 PRK05942 aspartate aminotransf 97.7 0.00059 1.3E-08 78.2 15.8 88 144-237 123-215 (394)
327 PRK15399 lysine decarboxylase 97.7 0.0053 1.2E-07 75.0 24.5 253 469-759 217-557 (713)
328 PRK08056 threonine-phosphate d 97.7 0.0026 5.6E-08 71.9 20.8 75 155-236 107-186 (356)
329 PLN02187 rooty/superroot1 97.7 0.007 1.5E-07 71.3 24.9 86 145-236 158-248 (462)
330 PRK04635 histidinol-phosphate 97.7 0.0018 3.9E-08 73.2 19.3 235 463-757 79-351 (354)
331 cd00615 Orn_deC_like Ornithine 97.7 0.00024 5.2E-09 78.3 11.6 118 469-607 81-236 (294)
332 PF00155 Aminotran_1_2: Aminot 97.7 0.0044 9.4E-08 69.7 22.0 217 508-755 95-363 (363)
333 PRK08114 cystathionine beta-ly 97.7 0.0015 3.2E-08 75.3 18.2 165 508-700 103-317 (395)
334 PRK07682 hypothetical protein; 97.7 0.0028 6E-08 72.1 20.4 244 463-759 83-374 (378)
335 PRK07777 aminotransferase; Val 97.7 0.0023 5.1E-08 73.0 19.8 246 463-759 87-384 (387)
336 PRK15029 arginine decarboxylas 97.7 0.0042 9E-08 76.6 22.9 120 469-607 227-402 (755)
337 PRK03244 argD acetylornithine 97.7 0.0051 1.1E-07 70.6 22.5 55 178-238 172-230 (398)
338 PRK07324 transaminase; Validat 97.7 0.00039 8.5E-09 79.2 13.2 87 145-237 107-198 (373)
339 TIGR01365 serC_2 phosphoserine 97.6 0.0036 7.9E-08 71.6 20.5 290 435-756 34-368 (374)
340 PTZ00377 alanine aminotransfer 97.6 0.0013 2.7E-08 77.8 17.3 93 144-236 165-262 (481)
341 PRK06836 aspartate aminotransf 97.6 0.00085 1.8E-08 77.0 15.4 88 144-237 122-219 (394)
342 TIGR01329 cysta_beta_ly_E cyst 97.6 0.0044 9.6E-08 71.0 21.0 180 508-722 87-316 (378)
343 TIGR03537 DapC succinyldiamino 97.6 0.0011 2.3E-08 74.9 15.7 86 144-235 89-179 (350)
344 PRK13355 bifunctional HTH-doma 97.6 0.006 1.3E-07 72.7 22.4 86 144-235 234-324 (517)
345 PTZ00433 tyrosine aminotransfe 97.6 0.0011 2.3E-08 76.7 15.5 88 144-237 130-222 (412)
346 PRK06767 methionine gamma-lyas 97.6 0.0031 6.7E-08 72.4 19.1 118 580-722 196-326 (386)
347 PRK08776 cystathionine gamma-s 97.6 0.0078 1.7E-07 69.7 22.5 177 509-719 102-328 (405)
348 PRK04073 rocD ornithine--oxo-a 97.6 0.0058 1.3E-07 70.2 21.3 141 582-759 248-395 (396)
349 COG0403 GcvP Glycine cleavage 97.6 0.015 3.3E-07 66.0 23.7 224 507-758 165-447 (450)
350 PRK07683 aminotransferase A; V 97.6 0.0013 2.7E-08 75.4 15.8 156 33-236 45-205 (387)
351 PRK13578 ornithine decarboxyla 97.6 0.0072 1.6E-07 74.0 22.8 257 469-759 196-563 (720)
352 TIGR03246 arg_catab_astC succi 97.6 0.02 4.3E-07 66.0 25.6 149 582-759 241-393 (397)
353 PRK05166 histidinol-phosphate 97.6 0.012 2.6E-07 66.9 23.6 239 463-759 90-369 (371)
354 PRK07504 O-succinylhomoserine 97.6 0.0028 6E-08 73.2 18.2 165 508-700 106-319 (398)
355 COG1982 LdcC Arginine/lysine/o 97.6 0.002 4.3E-08 76.0 16.9 204 142-469 110-322 (557)
356 PRK06107 aspartate aminotransf 97.6 0.0079 1.7E-07 69.2 21.8 86 144-235 119-210 (402)
357 PTZ00125 ornithine aminotransf 97.5 0.028 6.1E-07 64.4 26.2 149 582-760 240-394 (400)
358 PRK08153 histidinol-phosphate 97.5 0.0083 1.8E-07 68.3 21.6 251 451-759 75-363 (369)
359 COG3033 TnaA Tryptophanase [Am 97.5 0.00061 1.3E-08 75.2 11.6 205 150-467 131-353 (471)
360 PRK08045 cystathionine gamma-s 97.5 0.0084 1.8E-07 69.0 21.6 199 468-719 72-320 (386)
361 TIGR02618 tyr_phenol_ly tyrosi 97.5 0.0054 1.2E-07 71.2 19.8 233 512-760 114-425 (450)
362 PRK08175 aminotransferase; Val 97.5 0.0023 4.9E-08 73.4 16.9 89 144-236 117-208 (395)
363 COG0112 GlyA Glycine/serine hy 97.5 0.0029 6.3E-08 71.2 16.8 205 528-759 139-388 (413)
364 PRK07324 transaminase; Validat 97.5 0.013 2.9E-07 66.7 22.9 245 463-759 82-368 (373)
365 PRK04311 selenocysteine syntha 97.5 0.0068 1.5E-07 71.3 20.9 217 508-759 167-462 (464)
366 PRK06207 aspartate aminotransf 97.5 0.024 5.1E-07 65.5 25.1 246 463-759 104-400 (405)
367 COG0156 BioF 7-keto-8-aminopel 97.5 0.0095 2.1E-07 68.3 21.4 222 506-758 123-387 (388)
368 cd01494 AAT_I Aspartate aminot 97.5 0.00066 1.4E-08 66.7 10.7 131 447-605 4-170 (170)
369 PRK05994 O-acetylhomoserine am 97.5 0.0053 1.2E-07 71.5 19.7 214 468-718 83-363 (427)
370 TIGR03576 pyridox_MJ0158 pyrid 97.5 0.0043 9.4E-08 70.3 18.4 122 56-236 53-179 (346)
371 PRK04870 histidinol-phosphate 97.5 0.0028 6E-08 71.5 16.8 87 145-236 108-194 (356)
372 cd00617 Tnase_like Tryptophana 97.5 0.023 4.9E-07 66.4 24.5 254 468-760 73-407 (431)
373 TIGR01328 met_gam_lyase methio 97.5 0.0077 1.7E-07 69.4 20.6 178 509-718 101-327 (391)
374 PRK03158 histidinol-phosphate 97.5 0.015 3.2E-07 65.7 22.5 235 463-758 83-358 (359)
375 PRK15400 lysine decarboxylase 97.5 0.0093 2E-07 73.0 21.7 253 469-759 217-557 (714)
376 PRK07505 hypothetical protein; 97.5 0.022 4.7E-07 65.6 24.0 260 444-759 92-397 (402)
377 PRK08363 alanine aminotransfer 97.5 0.021 4.6E-07 65.5 23.7 251 463-760 95-393 (398)
378 PRK06434 cystathionine gamma-l 97.5 0.0033 7.2E-08 72.2 16.9 130 561-718 179-321 (384)
379 TIGR00474 selA seryl-tRNA(sec) 97.5 0.009 1.9E-07 70.1 20.7 212 508-755 162-453 (454)
380 PRK09105 putative aminotransfe 97.5 0.014 3.1E-07 66.5 22.0 244 453-759 88-368 (370)
381 PRK05957 aspartate aminotransf 97.5 0.028 6E-07 64.5 24.4 246 463-759 91-383 (389)
382 PRK08248 O-acetylhomoserine am 97.4 0.0083 1.8E-07 70.0 20.3 214 468-718 84-364 (431)
383 PRK08133 O-succinylhomoserine 97.4 0.0084 1.8E-07 69.0 20.2 200 448-700 66-314 (390)
384 PLN00175 aminotransferase fami 97.4 0.025 5.3E-07 65.6 23.9 246 463-759 117-411 (413)
385 PRK06348 aspartate aminotransf 97.4 0.0035 7.6E-08 71.6 16.7 89 144-238 115-208 (384)
386 PRK09082 methionine aminotrans 97.4 0.01 2.2E-07 67.9 20.4 243 463-757 93-385 (386)
387 COG0436 Aspartate/tyrosine/aro 97.4 0.018 3.9E-07 66.4 22.4 251 458-759 86-389 (393)
388 PLN02368 alanine transaminase 97.4 0.0032 6.9E-08 72.9 16.2 93 145-237 158-255 (407)
389 PRK07812 O-acetylhomoserine am 97.4 0.014 3E-07 68.3 21.4 218 468-719 89-369 (436)
390 PRK12462 phosphoserine aminotr 97.4 0.0029 6.3E-08 72.0 15.4 272 17-462 2-287 (364)
391 COG0436 Aspartate/tyrosine/aro 97.4 0.0026 5.6E-08 73.3 15.3 161 29-238 41-209 (393)
392 PRK08068 transaminase; Reviewe 97.4 0.0033 7.1E-08 71.9 15.9 87 144-236 120-211 (389)
393 TIGR01265 tyr_nico_aTase tyros 97.4 0.025 5.4E-07 65.2 23.2 255 463-759 98-399 (403)
394 PRK09265 aminotransferase AlaT 97.4 0.0024 5.3E-08 73.4 14.9 88 144-237 121-213 (404)
395 PRK05387 histidinol-phosphate 97.4 0.0091 2E-07 67.1 19.2 80 145-234 104-184 (353)
396 COG3844 Kynureninase [Amino ac 97.4 0.0033 7.3E-08 68.9 14.7 175 171-467 148-336 (407)
397 PLN02760 4-aminobutyrate:pyruv 97.4 0.041 8.9E-07 65.6 25.4 164 582-764 322-494 (504)
398 PRK07811 cystathionine gamma-s 97.4 0.017 3.7E-07 66.5 21.5 178 508-719 102-329 (388)
399 PRK08574 cystathionine gamma-s 97.4 0.0078 1.7E-07 69.2 18.6 197 468-719 73-322 (385)
400 PRK07050 cystathionine beta-ly 97.4 0.005 1.1E-07 71.0 17.1 203 468-721 85-337 (394)
401 TIGR00707 argD acetylornithine 97.4 0.03 6.5E-07 63.5 23.2 143 583-758 233-378 (379)
402 PRK09276 LL-diaminopimelate am 97.4 0.0046 9.9E-08 70.5 16.5 88 144-237 119-211 (385)
403 PRK01278 argD acetylornithine 97.3 0.049 1.1E-06 62.3 24.8 46 710-759 340-386 (389)
404 PRK08912 hypothetical protein; 97.3 0.02 4.2E-07 65.5 21.4 246 463-759 89-384 (387)
405 PRK04073 rocD ornithine--oxo-a 97.3 0.017 3.6E-07 66.5 20.9 113 109-237 103-232 (396)
406 PLN00143 tyrosine/nicotianamin 97.3 0.0038 8.1E-08 72.2 15.6 87 145-237 124-215 (409)
407 PRK15481 transcriptional regul 97.3 0.014 3.1E-07 67.7 20.4 241 463-759 143-429 (431)
408 TIGR01324 cysta_beta_ly_B cyst 97.3 0.0056 1.2E-07 70.2 16.6 115 581-720 186-319 (377)
409 PRK02627 acetylornithine amino 97.3 0.03 6.5E-07 64.0 22.7 86 662-760 303-393 (396)
410 TIGR01264 tyr_amTase_E tyrosin 97.3 0.0039 8.6E-08 71.6 15.5 88 145-238 122-214 (401)
411 TIGR01325 O_suc_HS_sulf O-succ 97.3 0.01 2.3E-07 68.0 18.8 184 468-699 74-306 (380)
412 TIGR02617 tnaA_trp_ase tryptop 97.3 0.0053 1.1E-07 71.0 16.1 301 424-760 57-440 (467)
413 PRK07568 aspartate aminotransf 97.3 0.034 7.3E-07 63.6 22.6 244 463-759 90-390 (397)
414 PLN02376 1-aminocyclopropane-1 97.3 0.031 6.7E-07 66.5 22.8 94 144-237 145-244 (496)
415 TIGR01976 am_tr_V_VC1184 cyste 97.3 0.0015 3.2E-08 74.7 11.3 268 448-755 65-397 (397)
416 PLN02231 alanine transaminase 97.3 0.0048 1E-07 73.9 16.0 92 145-236 219-315 (534)
417 PRK04260 acetylornithine amino 97.3 0.026 5.7E-07 64.3 21.3 142 588-758 231-374 (375)
418 KOG2467|consensus 97.3 0.0033 7.2E-08 69.7 13.2 175 170-465 168-345 (477)
419 PRK09148 aminotransferase; Val 97.3 0.0058 1.3E-07 70.5 16.1 89 145-237 119-210 (405)
420 PRK08249 cystathionine gamma-s 97.3 0.023 5.1E-07 65.6 20.9 177 508-718 105-330 (398)
421 PRK00854 rocD ornithine--oxo-a 97.2 0.028 6.1E-07 64.5 21.5 55 177-237 175-233 (401)
422 PRK07550 hypothetical protein; 97.2 0.053 1.2E-06 61.9 23.6 245 463-758 92-384 (386)
423 PRK03715 argD acetylornithine 97.2 0.07 1.5E-06 61.6 24.7 145 582-760 241-392 (395)
424 PRK03321 putative aminotransfe 97.2 0.0021 4.5E-08 72.4 11.9 88 145-238 101-190 (352)
425 PTZ00433 tyrosine aminotransfe 97.2 0.058 1.3E-06 62.4 24.1 250 463-759 106-406 (412)
426 PRK03715 argD acetylornithine 97.2 0.021 4.5E-07 65.9 20.2 118 108-238 98-226 (395)
427 TIGR03537 DapC succinyldiamino 97.2 0.021 4.6E-07 64.3 20.0 246 460-757 59-349 (350)
428 TIGR01140 L_thr_O3P_dcar L-thr 97.2 0.023 4.9E-07 63.7 19.7 202 509-755 89-329 (330)
429 PTZ00125 ornithine aminotransf 97.2 0.027 5.9E-07 64.5 20.9 55 178-237 166-224 (400)
430 PRK12381 bifunctional succinyl 97.2 0.065 1.4E-06 62.0 24.0 150 582-760 245-398 (406)
431 TIGR02080 O_succ_thio_ly O-suc 97.2 0.027 5.8E-07 64.8 20.5 185 468-700 71-305 (382)
432 PRK03317 histidinol-phosphate 97.2 0.036 7.7E-07 62.9 21.4 235 463-759 90-362 (368)
433 PRK04635 histidinol-phosphate 97.2 0.0073 1.6E-07 68.3 15.7 82 145-234 105-187 (354)
434 TIGR01885 Orn_aminotrans ornit 97.2 0.037 8E-07 63.7 21.7 115 109-236 100-231 (401)
435 PRK02610 histidinol-phosphate 97.2 0.11 2.3E-06 59.4 25.2 258 447-763 70-373 (374)
436 PLN00145 tyrosine/nicotianamin 97.2 0.036 7.9E-07 64.6 21.7 256 463-759 119-422 (430)
437 PRK08636 aspartate aminotransf 97.2 0.011 2.5E-07 67.9 17.3 94 144-237 121-220 (403)
438 PRK02936 argD acetylornithine 97.2 0.03 6.4E-07 63.7 20.5 86 661-758 287-376 (377)
439 PRK03967 histidinol-phosphate 97.2 0.0053 1.2E-07 69.0 14.2 84 145-236 97-180 (337)
440 PRK02936 argD acetylornithine 97.2 0.034 7.3E-07 63.3 20.8 54 178-237 156-213 (377)
441 PRK04781 histidinol-phosphate 97.2 0.064 1.4E-06 61.0 23.0 90 658-759 270-361 (364)
442 PRK02731 histidinol-phosphate 97.2 0.0053 1.2E-07 69.4 14.2 86 145-237 111-198 (367)
443 PF01276 OKR_DC_1: Orn/Lys/Arg 97.2 0.0063 1.4E-07 70.2 14.7 120 469-608 88-257 (417)
444 PRK08056 threonine-phosphate d 97.2 0.05 1.1E-06 61.6 22.0 237 463-759 74-353 (356)
445 TIGR00707 argD acetylornithine 97.2 0.042 9.1E-07 62.3 21.3 54 178-237 159-216 (379)
446 TIGR03538 DapC_gpp succinyldia 97.1 0.0081 1.8E-07 68.8 15.6 86 145-236 119-209 (393)
447 COG0403 GcvP Glycine cleavage 97.1 0.082 1.8E-06 60.3 22.8 74 143-227 165-242 (450)
448 PRK06176 cystathionine gamma-s 97.1 0.019 4.2E-07 65.9 18.4 113 581-719 185-316 (380)
449 PRK06358 threonine-phosphate d 97.1 0.1 2.2E-06 59.1 24.1 102 645-759 248-353 (354)
450 PRK07309 aromatic amino acid a 97.1 0.086 1.9E-06 60.5 23.8 249 463-759 93-386 (391)
451 COG0161 BioA Adenosylmethionin 97.1 0.056 1.2E-06 62.8 21.9 306 419-760 45-442 (449)
452 PRK06084 O-acetylhomoserine am 97.1 0.057 1.2E-06 63.0 22.5 68 644-718 274-359 (425)
453 PRK06290 aspartate aminotransf 97.1 0.057 1.2E-06 62.6 22.4 251 463-760 108-404 (410)
454 PRK07681 aspartate aminotransf 97.1 0.09 2E-06 60.4 23.8 243 463-758 95-385 (399)
455 PRK07503 methionine gamma-lyas 97.1 0.04 8.8E-07 63.7 20.9 165 508-700 106-320 (403)
456 PLN02509 cystathionine beta-ly 97.1 0.023 5.1E-07 66.9 19.1 176 508-718 173-398 (464)
457 PRK07049 methionine gamma-lyas 97.1 0.031 6.7E-07 65.2 20.0 85 145-234 125-219 (427)
458 PRK06290 aspartate aminotransf 97.1 0.012 2.6E-07 68.1 16.5 87 145-237 133-224 (410)
459 PRK03317 histidinol-phosphate 97.1 0.013 2.8E-07 66.5 16.4 88 145-237 115-202 (368)
460 PRK06836 aspartate aminotransf 97.1 0.036 7.8E-07 63.7 20.2 247 463-759 98-389 (394)
461 PRK09265 aminotransferase AlaT 97.1 0.064 1.4E-06 61.7 22.2 255 463-759 97-399 (404)
462 PRK07908 hypothetical protein; 97.1 0.09 1.9E-06 59.2 22.9 68 156-234 110-177 (349)
463 PRK05166 histidinol-phosphate 97.1 0.0039 8.4E-08 70.9 12.0 86 145-236 115-202 (371)
464 PRK05769 4-aminobutyrate amino 97.1 0.19 4.1E-06 58.9 26.2 152 582-760 283-438 (441)
465 PRK08247 cystathionine gamma-s 97.1 0.045 9.8E-07 62.4 20.5 162 509-699 93-288 (366)
466 PRK01688 histidinol-phosphate 97.0 0.004 8.7E-08 70.4 11.7 85 144-235 101-187 (351)
467 PRK06234 methionine gamma-lyas 97.0 0.03 6.6E-07 64.7 19.1 200 468-720 84-336 (400)
468 PRK05942 aspartate aminotransf 97.0 0.13 2.7E-06 59.2 23.8 236 468-758 102-386 (394)
469 PRK06358 threonine-phosphate d 97.0 0.028 6.1E-07 63.6 18.1 84 145-235 96-184 (354)
470 PRK12414 putative aminotransfe 97.0 0.071 1.5E-06 61.0 21.6 243 463-757 92-383 (384)
471 PRK11522 putrescine--2-oxoglut 97.0 0.27 5.7E-06 58.1 26.6 154 582-762 293-452 (459)
472 PRK06348 aspartate aminotransf 97.0 0.071 1.5E-06 61.0 21.3 243 463-758 91-382 (384)
473 TIGR03540 DapC_direct LL-diami 97.0 0.14 3.1E-06 58.3 23.7 238 468-756 96-381 (383)
474 PLN02624 ornithine-delta-amino 97.0 0.19 4.1E-06 59.5 25.3 151 582-760 286-443 (474)
475 PRK03158 histidinol-phosphate 97.0 0.0058 1.3E-07 69.0 11.9 86 145-237 108-195 (359)
476 PRK08960 hypothetical protein; 97.0 0.072 1.6E-06 60.9 21.0 244 463-758 94-384 (387)
477 PRK13355 bifunctional HTH-doma 96.9 0.14 3E-06 61.3 24.0 253 463-759 210-512 (517)
478 COG1168 MalY Bifunctional PLP- 96.9 0.094 2E-06 59.1 20.5 82 150-236 115-207 (388)
479 PTZ00377 alanine aminotransfer 96.9 0.47 1E-05 56.2 27.9 256 463-760 140-474 (481)
480 PLN03026 histidinol-phosphate 96.9 0.0073 1.6E-07 69.1 12.3 85 145-235 130-214 (380)
481 COG0001 HemL Glutamate-1-semia 96.9 0.036 7.7E-07 63.8 17.5 265 443-760 93-427 (432)
482 PRK09276 LL-diaminopimelate am 96.9 0.1 2.2E-06 59.6 21.5 238 468-756 98-383 (385)
483 PRK08068 transaminase; Reviewe 96.9 0.17 3.6E-06 58.0 23.4 237 468-757 99-385 (389)
484 PRK07810 O-succinylhomoserine 96.9 0.054 1.2E-06 62.7 19.4 185 468-700 90-324 (403)
485 PRK09148 aminotransferase; Val 96.9 0.13 2.9E-06 59.3 22.7 258 463-768 94-397 (405)
486 COG2873 MET17 O-acetylhomoseri 96.9 0.036 7.9E-07 62.1 16.8 182 523-719 122-363 (426)
487 COG4992 ArgD Ornithine/acetylo 96.9 0.078 1.7E-06 60.5 19.8 148 582-760 246-397 (404)
488 TIGR01264 tyr_amTase_E tyrosin 96.9 0.13 2.9E-06 59.0 22.4 253 463-759 97-397 (401)
489 PLN02656 tyrosine transaminase 96.9 0.14 3.1E-06 59.1 22.7 251 463-759 98-401 (409)
490 PLN02450 1-aminocyclopropane-1 96.9 0.017 3.7E-07 68.1 15.2 94 145-238 138-237 (468)
491 PRK04260 acetylornithine amino 96.9 0.06 1.3E-06 61.4 19.2 112 108-237 89-211 (375)
492 PRK09105 putative aminotransfe 96.8 0.015 3.1E-07 66.5 14.0 84 145-235 122-207 (370)
493 PRK09147 succinyldiaminopimela 96.8 0.02 4.3E-07 65.7 15.0 86 145-236 120-210 (396)
494 PLN02624 ornithine-delta-amino 96.8 0.12 2.5E-06 61.3 21.7 57 178-237 210-270 (474)
495 PLN00143 tyrosine/nicotianamin 96.8 0.098 2.1E-06 60.5 20.7 257 463-759 99-402 (409)
496 PLN02187 rooty/superroot1 96.8 0.26 5.6E-06 58.2 24.4 253 463-759 133-436 (462)
497 TIGR02407 ectoine_ectB diamino 96.8 0.51 1.1E-05 54.8 26.4 147 582-759 256-410 (412)
498 PRK07482 hypothetical protein; 96.8 0.49 1.1E-05 55.9 26.5 164 582-762 282-455 (461)
499 PRK05093 argD bifunctional N-s 96.8 0.37 7.9E-06 55.6 25.0 92 661-760 304-399 (403)
500 TIGR01326 OAH_OAS_sulfhy OAH/O 96.8 0.095 2.1E-06 61.0 20.3 210 468-719 77-357 (418)
No 1
>KOG0628|consensus
Probab=100.00 E-value=4e-69 Score=589.40 Aligned_cols=404 Identities=55% Similarity=0.967 Sum_probs=366.6
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
+-..|+||++||+||+||+|+|+++++|+++|+||+..+++.|++|..||++|+||..+++||++|+|+|+.|+...
T Consensus 60 ~ekiI~PGitHw~hP~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~--- 136 (511)
T KOG0628|consen 60 LEKIIMPGITHWQHPHFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLG--- 136 (511)
T ss_pred HHHHccCCCcccCCCceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccC---
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999987522
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHH-----HHHHhc-----cccCCccccccccCCeEEEecCCCCh
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNII-----VLTRGQ-----KKIHPFVDEGVLLSKLMAYCSKEAHS 153 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~-----~~ar~~-----~~~~~~~~~g~~~~~~~v~~S~~~H~ 153 (891)
.+-+||++|+..+.. ..||.+ +..+|.+.+...+.++++|+|+++|.
T Consensus 137 -----------------------~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahs 193 (511)
T KOG0628|consen 137 -----------------------LGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHS 193 (511)
T ss_pred -----------------------CCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccc
Confidence 223566666544322 225655 23568888888999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecc
Q psy852 154 CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGA 233 (891)
Q Consensus 154 Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA 233 (891)
|++|||.+++++++.+++|++..|+.+.|+++|++|.++|.+|++|++|.|||.++++|+|.+|..+|+++
T Consensus 194 sveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~--------- 264 (511)
T KOG0628|consen 194 SVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREE--------- 264 (511)
T ss_pred hHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccc
Q psy852 234 YAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 313 (891)
Q Consensus 234 ~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (891)
T Consensus 265 -------------------------------------------------------------------------------- 264 (511)
T KOG0628|consen 265 -------------------------------------------------------------------------------- 264 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhc
Q psy852 314 HSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393 (891)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~ 393 (891)
++|||||+||||++++||+++.+++||++|||+++|+|||+.+.++|+.+|+||+..+..++
T Consensus 265 ------------------glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~ 326 (511)
T KOG0628|consen 265 ------------------GLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAF 326 (511)
T ss_pred ------------------CEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeee
Confidence 58999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcc
Q psy852 394 VVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSAS 473 (891)
Q Consensus 394 ~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggs 473 (891)
.++|.||.+...+
T Consensus 327 ~vdp~yL~h~~~~------------------------------------------------------------------- 339 (511)
T KOG0628|consen 327 NVDPLYLKHAYQG------------------------------------------------------------------- 339 (511)
T ss_pred ecChHhhcchhhc-------------------------------------------------------------------
Confidence 9999999765210
Q ss_pred hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhh
Q psy852 474 ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQD 553 (891)
Q Consensus 474 ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d 553 (891)
T Consensus 340 -------------------------------------------------------------------------------- 339 (511)
T KOG0628|consen 340 -------------------------------------------------------------------------------- 339 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 554 ETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 554 ~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
..++++.
T Consensus 340 -------------------------------------------------------------------------~~~Dyrh 346 (511)
T KOG0628|consen 340 -------------------------------------------------------------------------SAPDYRH 346 (511)
T ss_pred -------------------------------------------------------------------------cCCCccc
Confidence 0124567
Q ss_pred CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHH
Q psy852 634 WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKL 713 (891)
Q Consensus 634 ~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L 713 (891)
|.++++||||+||+|++++.+|.+++++.+++..+||+.|.+.+.+.+.||+.++..+++||||.++. |++|++|
T Consensus 347 wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~-----N~~ne~L 421 (511)
T KOG0628|consen 347 WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGD-----NEINEAL 421 (511)
T ss_pred cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCC-----cHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred HHHHHhCCcEEEeeccccCCeEE-EEec-CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy852 714 LEDINASGRLHMVPASQEQNDEV-FELQ-ERKRKDDLAYKRSFFVRMLGLVCFR 765 (891)
Q Consensus 714 ~~~L~~~G~~~~s~s~~~g~~~l-~sv~-~~tT~edId~li~~L~ei~~~~~~~ 765 (891)
+++++.+|.++++++.+.|++++ ++++ +.|+++||+..++.|.+.++.+.+.
T Consensus 422 l~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 422 LNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred HHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999 8865 4899999999999999998765543
No 2
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=5.2e-68 Score=618.27 Aligned_cols=405 Identities=37% Similarity=0.720 Sum_probs=346.2
Q ss_pred hhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy852 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQG 83 (891)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~ 83 (891)
+.+.|+|+++||+||||++|+++++++++++|+++++++|+++++|..||++++||++|++||++|+|+|+.++. ...+
T Consensus 117 ~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~-~~~~ 195 (539)
T PLN02590 117 VSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLS-TGNG 195 (539)
T ss_pred HHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCccccc-CCCC
Confidence 567799999999999999999999999999999999999999999999999999999999999999999987541 0012
Q ss_pred CCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcccccc-ccCCeEEEecCCCChHHHHHHHHc
Q psy852 84 KNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMMA 162 (891)
Q Consensus 84 ~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~-~~~~~~v~~S~~~H~Sv~kaa~~~ 162 (891)
. |.+++|||+ +|+..+..||++.... .|. ..++++||+|+++|||+.|++++.
T Consensus 196 g---------------------G~~~sGgSe-Anl~al~aAR~~~~~~----~g~~~~~~~vvy~S~~aH~Sv~KAa~il 249 (539)
T PLN02590 196 G---------------------GVIQGTGCE-AVLVVVLAARDRILKK----VGKTLLPQLVVYGSDQTHSSFRKACLIG 249 (539)
T ss_pred c---------------------eEEcCchHH-HHHHHHHHHHHHHHhh----hcccCCCCEEEEecCCchHHHHHHHHHc
Confidence 2 234688885 5677777899864211 121 247889999999999999999875
Q ss_pred CC---eEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCC
Q psy852 163 FV---RLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 163 ~~---~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|. +++.||+|+ +++||+++|+++|+++.++|.+|++|++|+|||.+|+||||.+|+++|++||+|+||||||||+
T Consensus 250 Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~ 329 (539)
T PLN02590 250 GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGN 329 (539)
T ss_pred CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhh
Confidence 54 799999994 6899999999999999999999999999999999999999999999999997666666666555
Q ss_pred ccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccc
Q psy852 238 SFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 317 (891)
Q Consensus 238 ~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (891)
.+
T Consensus 330 al------------------------------------------------------------------------------ 331 (539)
T PLN02590 330 AC------------------------------------------------------------------------------ 331 (539)
T ss_pred hh------------------------------------------------------------------------------
Confidence 54
Q ss_pred ccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc
Q psy852 318 ETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~ 397 (891)
++|+++++++|++.||||++|+|||+++||+||++++|++..+..++..++
T Consensus 332 -----------------------------~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~ 382 (539)
T PLN02590 332 -----------------------------ICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNP 382 (539)
T ss_pred -----------------------------cChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCH
Confidence 455556677899999999999999999999999999999877777676677
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
+|+....+.
T Consensus 383 ~YL~~~~~~----------------------------------------------------------------------- 391 (539)
T PLN02590 383 EYLEFKVSK----------------------------------------------------------------------- 391 (539)
T ss_pred HHhCCcccc-----------------------------------------------------------------------
Confidence 776432000
Q ss_pred HHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC
Q psy852 478 VCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG 557 (891)
Q Consensus 478 ~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g 557 (891)
T Consensus 392 -------------------------------------------------------------------------------- 391 (539)
T PLN02590 392 -------------------------------------------------------------------------------- 391 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc
Q psy852 558 YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP 637 (891)
Q Consensus 558 ~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~ 637 (891)
.+..+++.+++++
T Consensus 392 -------------------------------------------------------------------~~~~~d~~d~~i~ 404 (539)
T PLN02590 392 -------------------------------------------------------------------KDTVVNYKDWQIS 404 (539)
T ss_pred -------------------------------------------------------------------cccCCCccccCCC
Confidence 0011245678999
Q ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc--chhhhhhHHHHHH
Q psy852 638 LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN--NLIADQNNRKLLE 715 (891)
Q Consensus 638 ~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~--~~~~d~ln~~L~~ 715 (891)
+|||+++|++|++|+.+|.+||++++++++++|++|.+.|++.++||++.+|.+++||||+.|.. .++.|++|++|.+
T Consensus 405 lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~ 484 (539)
T PLN02590 405 LSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLA 484 (539)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998752 3457899999999
Q ss_pred HHHhCCcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHH
Q psy852 716 DINASGRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 716 ~L~~~G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~ 760 (891)
+|+++|.+|++++.+++++++ +++ ++.|+++||+.+++.|.+.+.
T Consensus 485 ~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~ 531 (539)
T PLN02590 485 AVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS 531 (539)
T ss_pred HHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 875 668999999999999998763
No 3
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=4.4e-63 Score=575.68 Aligned_cols=406 Identities=39% Similarity=0.697 Sum_probs=340.8
Q ss_pred hhhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQ 82 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~ 82 (891)
.+.+.|+|+++||+||+|++|+++++++++++|+++++.+|+|+.+|+.||++++||+++++||++|+|+|+.+... -.
T Consensus 68 ~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~-~~ 146 (490)
T PLN02880 68 DVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLST-GN 146 (490)
T ss_pred HHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcC-CC
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999875310 00
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccc-cccCCeEEEecCCCChHHHHHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEG-VLLSKLMAYCSKEAHSCVEKAAMM 161 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g-~~~~~~~v~~S~~~H~Sv~kaa~~ 161 (891)
+. |.+++|||+ +|+..+.+||++.... .| ...++++||+|+++|||+.|++.+
T Consensus 147 ~g---------------------G~~tsggs~-anl~al~~AR~~~~~~----~g~~~~~~~vv~~S~~aH~Sv~Kaa~~ 200 (490)
T PLN02880 147 GG---------------------GVIQGTASE-AVLVVLLAARDRVLRK----VGKNALEKLVVYASDQTHSALQKACQI 200 (490)
T ss_pred Cc---------------------eEEcCccHH-HHHHHHHHHHHHHHHH----hcccccCCeEEEEcCCchHHHHHHHHH
Confidence 11 234678875 6777788899864211 11 124678999999999999999976
Q ss_pred cCC---eEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccC
Q psy852 162 AFV---RLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 162 ~~~---~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.|. +++.||+|+ +++||+++|+++|+++.++|.+|++|++|+|||.+|++|||++|+++|+++|+|+||||||||
T Consensus 201 lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg 280 (490)
T PLN02880 201 AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280 (490)
T ss_pred cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHH
Confidence 554 689999985 679999999999999999999999999999999999999999999999999766666666655
Q ss_pred CccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccc
Q psy852 237 SSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC 316 (891)
Q Consensus 237 ~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (891)
+.
T Consensus 281 ~~------------------------------------------------------------------------------ 282 (490)
T PLN02880 281 SA------------------------------------------------------------------------------ 282 (490)
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred cccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccC
Q psy852 317 VETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 396 (891)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~ 396 (891)
+++|+++..++|++.|||+++|+|||+++|++||++++|++..+...+..+
T Consensus 283 -----------------------------~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~ 333 (490)
T PLN02880 283 -----------------------------CICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTN 333 (490)
T ss_pred -----------------------------HhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccC
Confidence 445555667788889999999999999999999999999876665555556
Q ss_pred ccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhH
Q psy852 397 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECI 476 (891)
Q Consensus 397 ~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean 476 (891)
+.|+.+..+.
T Consensus 334 ~~Yl~~~~~~---------------------------------------------------------------------- 343 (490)
T PLN02880 334 PEFLKNKASQ---------------------------------------------------------------------- 343 (490)
T ss_pred HHHhcCcccc----------------------------------------------------------------------
Confidence 6665432100
Q ss_pred HHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc
Q psy852 477 FVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM 556 (891)
Q Consensus 477 ~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~ 556 (891)
T Consensus 344 -------------------------------------------------------------------------------- 343 (490)
T PLN02880 344 -------------------------------------------------------------------------------- 343 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 557 GYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 557 g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
....+++.++++
T Consensus 344 --------------------------------------------------------------------~~~~~~~~~~~i 355 (490)
T PLN02880 344 --------------------------------------------------------------------ANSVVDYKDWQI 355 (490)
T ss_pred --------------------------------------------------------------------ccCCCChhccCc
Confidence 001123446778
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc--chhhhhhHHHHH
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN--NLIADQNNRKLL 714 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~--~~~~d~ln~~L~ 714 (891)
++|||+++|++|++|+.+|.+||++++++++++|+++.+.|++.++|+++.++++++||||+.|.. .+..|.+|+++.
T Consensus 356 ~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~ 435 (490)
T PLN02880 356 PLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLL 435 (490)
T ss_pred CCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999998642 356788999999
Q ss_pred HHHHhCCcEEEeeccccCCeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQEQNDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~~g~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
++|+++|.++++.+.++++.++ +|+++ .||++||+.+++.|++++.
T Consensus 436 ~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~ 483 (490)
T PLN02880 436 DAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS 483 (490)
T ss_pred HHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 98765 6788999999999998874
No 4
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=9.5e-61 Score=539.26 Aligned_cols=335 Identities=36% Similarity=0.661 Sum_probs=278.1
Q ss_pred hhhhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQ 82 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~ 82 (891)
.+.+.|.|++.+|+||+|++|++++++++++++++++.++|+|+..|+.+|++++||.++++|+++|+|+|..+.... .
T Consensus 25 ~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~-~ 103 (373)
T PF00282_consen 25 DLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSK-D 103 (373)
T ss_dssp HHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTT-T
T ss_pred HHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccC-C
Confidence 356789999999999999999999999999999999999999999999999999999999999999999997654211 1
Q ss_pred CCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-cccc-cCCeEEEecCCCChHHHHHHH
Q psy852 83 GKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGVL-LSKLMAYCSKEAHSCVEKAAM 160 (891)
Q Consensus 83 ~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~~-~~~~~v~~S~~~H~Sv~kaa~ 160 (891)
++|+ +|+|||+ +|+..+..||++.. +..+ +|.. .+++++|+|+++|||+.|++.
T Consensus 104 ~~G~---------------------~t~Ggt~-anl~al~aAR~~~~--~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~ 159 (373)
T PF00282_consen 104 AGGV---------------------FTSGGTE-ANLYALLAARERAL--PRSKAKGVEEIPKPVIYVSEQAHYSIEKAAR 159 (373)
T ss_dssp SEEE---------------------EESSHHH-HHHHHHHHHHHHHH--HHHHHHTTTHCSSEEEEEETTS-THHHHHHH
T ss_pred Ccee---------------------EeccchH-HHHHHHHHHHHHHh--hhhhhcccccccccccccccccccHHHHhcc
Confidence 2232 4578875 57777778888642 1111 1211 568999999999999999999
Q ss_pred HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccc
Q psy852 161 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFI 240 (891)
Q Consensus 161 ~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~ 240 (891)
+.|..++.||+|++|+||+++|+++|+++.++|++|++|++|+|||.+|++|||.+|+++|+++++|+||||||||
T Consensus 160 ~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg---- 235 (373)
T PF00282_consen 160 ILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGG---- 235 (373)
T ss_dssp HTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGG----
T ss_pred eeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccc----
Confidence 8888899999999999999999999999999999999999999999999999999999999999655555555555
Q ss_pred cCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccc
Q psy852 241 CPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETR 320 (891)
Q Consensus 241 ~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (891)
T Consensus 236 -------------------------------------------------------------------------------- 235 (373)
T PF00282_consen 236 -------------------------------------------------------------------------------- 235 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCcccc
Q psy852 321 GHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL 400 (891)
Q Consensus 321 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~ 400 (891)
+.+++|++++++.|++.||||++|+|||+++||+||++++|++..+...+..++.|+
T Consensus 236 -----------------------~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl 292 (373)
T PF00282_consen 236 -----------------------SALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYL 292 (373)
T ss_dssp -----------------------GGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCT
T ss_pred -----------------------cccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhh
Confidence 444555666778899999999999999999999999999999998888888899999
Q ss_pred CCCC---CCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC
Q psy852 401 QHGH---EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR 469 (891)
Q Consensus 401 ~~~~---~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it 469 (891)
.+.. +...++.+++++|||++++|++|++||.+|.+||++++++.+++|++|+++|++.++|++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~ 364 (373)
T PF00282_consen 293 GNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPD 364 (373)
T ss_dssp T-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTS
T ss_pred cccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 8653 24577899999999999999999999999999999999999999999999999999999998643
No 5
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=1.6e-57 Score=530.63 Aligned_cols=399 Identities=21% Similarity=0.266 Sum_probs=318.2
Q ss_pred hhhhHhhccCCCCCCccccccCCCC-CCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCC-CCC----
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSG-NSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLP-EKF---- 76 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~---- 76 (891)
.+.+.++|+++||+||+|++||+++ +.+...+++ +...+|+|++.|+.||++++||++|++||++|+|.+ +.+
T Consensus 75 ~~~~~~~~~~~~~~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~ 153 (522)
T TIGR03799 75 FLLDKLVAHSVHTASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKW 153 (522)
T ss_pred HHHHHHHcCCCCCCCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhc
Confidence 3567899999999999999999996 333344777 566899999999999999999999999999999643 222
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC----Cccc-cccc-------cCCeE
Q psy852 77 LMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH----PFVD-EGVL-------LSKLM 144 (891)
Q Consensus 77 ~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~----~~~~-~g~~-------~~~~~ 144 (891)
++....++ |.+++|||+ +|+..+.+||++.... ..+. +|.. .++++
T Consensus 154 ~~~~~~~~---------------------G~~tsGGS~-ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 211 (522)
T TIGR03799 154 MHSADHSL---------------------GAFCSGGTV-ANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLA 211 (522)
T ss_pred ccCCCCCC---------------------eEEcCchHH-HHHHHHHHHHHHhccccccccccccccchhhhhhccCCceE
Confidence 11100111 335689985 5777788899874211 1121 2322 35789
Q ss_pred EEecCCCChHHHHHHHHcCC---eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~---~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
||+|+.+|||+.|++.+.+. +++.||+|++|+||+++|+++|+++.++|.+|++|++|+|||++|++|||++|+++|
T Consensus 212 v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~ 291 (522)
T TIGR03799 212 ILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIA 291 (522)
T ss_pred EEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHH
Confidence 99999999999999976544 899999999999999999999999998999999999999999999999999999999
Q ss_pred HHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhH
Q psy852 222 KEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVL 301 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (891)
+++|+|+||||||||..+
T Consensus 292 ~~~g~~lHVDaA~gg~~~-------------------------------------------------------------- 309 (522)
T TIGR03799 292 QELGCHFHVDAAWGGATL-------------------------------------------------------------- 309 (522)
T ss_pred HHcCCeEEEEchhhhHHH--------------------------------------------------------------
Confidence 999777777777765443
Q ss_pred HHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEE
Q psy852 302 LSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCL 381 (891)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~ 381 (891)
++++++.+++|++.|||+++|+|||+++|++||++
T Consensus 310 ---------------------------------------------~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~l 344 (522)
T TIGR03799 310 ---------------------------------------------LSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMV 344 (522)
T ss_pred ---------------------------------------------hCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEE
Confidence 34455566788888999999999999999999999
Q ss_pred EEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCc
Q psy852 382 WVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPR 461 (891)
Q Consensus 382 ~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~ 461 (891)
++|++..+ ..+...++|+...
T Consensus 345 lvr~~~~~-~~~~~~~~Yl~~~---------------------------------------------------------- 365 (522)
T TIGR03799 345 LFKDPALM-SAIEHHAEYILRK---------------------------------------------------------- 365 (522)
T ss_pred EEeCHHHH-HHhccCcchhcCC----------------------------------------------------------
Confidence 99987432 2233333333110
Q ss_pred cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCc
Q psy852 462 FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSL 541 (891)
Q Consensus 462 ~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~m 541 (891)
T Consensus 366 -------------------------------------------------------------------------------- 365 (522)
T TIGR03799 366 -------------------------------------------------------------------------------- 365 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHhhhhcCCccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCcc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYL 621 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl 621 (891)
T Consensus 366 -------------------------------------------------------------------------------- 365 (522)
T TIGR03799 366 -------------------------------------------------------------------------------- 365 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCC
Q psy852 622 QHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSE 701 (891)
Q Consensus 622 ~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~ 701 (891)
...+++.+++++||+++++++|++|+.+|.+||+++++++++++++|.+.|++.|+|+++++|++++||||+.|.
T Consensus 366 -----~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~ 440 (522)
T TIGR03799 366 -----GSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPE 440 (522)
T ss_pred -----CCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeCh
Confidence 000122456778999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c----------------chhhhhhHHHHHHHHHhCCcEEEeecccc-------CCeEE-EEe-cCCCCHHHHHHHHHHH
Q psy852 702 N----------------NLIADQNNRKLLEDINASGRLHMVPASQE-------QNDEV-FEL-QERKRKDDLAYKRSFF 755 (891)
Q Consensus 702 ~----------------~~~~d~ln~~L~~~L~~~G~~~~s~s~~~-------g~~~l-~sv-~~~tT~edId~li~~L 755 (891)
. .+..|++|+++.++++++|.+|++.+.++ +..++ +++ ++.||.+||+.+++.=
T Consensus 441 ~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~ 519 (522)
T TIGR03799 441 EVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQ 519 (522)
T ss_pred hhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHh
Confidence 2 23468899999999999999999988765 34567 775 6689999999987653
No 6
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=2.7e-56 Score=524.51 Aligned_cols=364 Identities=17% Similarity=0.194 Sum_probs=289.3
Q ss_pred hhhhHhhccCCCCCCc-cccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHP-RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPP 81 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~ 81 (891)
.|.+.+.+++++|+|| ||++||++++++|+++|+++++++|+|+++|+.||++++||+++++|||+|+||+..
T Consensus 68 ~l~~~l~~~sv~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~------ 141 (608)
T TIGR03811 68 ELSSRLRTESVPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG------ 141 (608)
T ss_pred HHHHHHhcCCCCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC------
Confidence 3567788999999999 999999999999999999999999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC--------cc-------------------
Q psy852 82 QGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP--------FV------------------- 134 (891)
Q Consensus 82 ~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~--------~~------------------- 134 (891)
||+| |+|||+ +|+..+.+||+.+. +| ..
T Consensus 142 --~G~~---------------------TsGGT~-ANl~aL~~AR~~k~-~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~ 196 (608)
T TIGR03811 142 --WGHI---------------------VADGSL-ANLEGLWYARNIKS-LPFAMKEVKPELVAGKSDWELLNMPTKEIMD 196 (608)
T ss_pred --CeEE---------------------eCChHH-HHHHHHHHHHHhhh-ccchhhhccccccccccchhhcccccccccc
Confidence 4554 579985 67888888998641 11 00
Q ss_pred ------------c-----cccccCCe-EEEecCCCChHHHHHHHHcC---CeEEEEecCCCCcccHHHHHHHHHhhhhcC
Q psy852 135 ------------D-----EGVLLSKL-MAYCSKEAHSCVEKAAMMAF---VRLKILEPDDKNSLRGATLRQVMQQDETMG 193 (891)
Q Consensus 135 ------------~-----~g~~~~~~-~v~~S~~~H~Sv~kaa~~~~---~~v~~V~~d~~g~id~~~L~~~l~~~~~~g 193 (891)
+ .|....++ ++++|+.+|||+.|++.+.| .+++.||+|++++||+++|+++|+++.++|
T Consensus 197 l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g 276 (608)
T TIGR03811 197 LLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEK 276 (608)
T ss_pred cccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcC
Confidence 0 01112334 79999999999999997644 389999999999999999999999999999
Q ss_pred CcceEEEeecccCccccccCHHHHHHHH---HHcCC--ceeeeccccCCc--cccCCCCccCCCCcccccCCCCcccccC
Q psy852 194 YIPFFVSTTLGTTSCCSFDNLAEIGPVA---KEFDV--WLHVDGAYAGSS--FICPEFRPFMNGKTSFDNLHLSPIWYER 266 (891)
Q Consensus 194 ~~p~~V~~t~Gtt~~GavDpl~~I~~i~---~~~~~--~lHvDaA~GG~~--~~~~~~~~~~~g~~~~d~~~~s~~~~~~ 266 (891)
.+|++||+|+|||++|+||||++|+++| +++|+ |+||||||||++ +++++..
T Consensus 277 ~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~--------------------- 335 (608)
T TIGR03811 277 TPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDD--------------------- 335 (608)
T ss_pred CCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccc---------------------
Confidence 9999999999999999999999999999 66887 699999999986 3433211
Q ss_pred CCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeecccc-Ccc
Q psy852 267 PSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYA-GSS 345 (891)
Q Consensus 267 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 345 (891)
...||.+.. .. ++ -.+.+. ...
T Consensus 336 ------------------------~~~p~~~~~---~~---------------------~~---------~~~~f~~~~~ 358 (608)
T TIGR03811 336 ------------------------NFIPYDDLQ---EV---------------------HA---------EYGVFTEKKE 358 (608)
T ss_pred ------------------------cccccchhh---cc---------------------cc---------cccccccccc
Confidence 011222111 00 00 000000 011
Q ss_pred ccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCC-cccccccccCCCCC-hhH
Q psy852 346 FICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG-AIDYRHWGIPLSRR-FRS 423 (891)
Q Consensus 346 ~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~sr~-~~~ 423 (891)
.++++.++.++||+.|||||+|||||+++||+||++++||+. +...+...++|+...... ....+.++++|||+ +++
T Consensus 359 ~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~A 437 (608)
T TIGR03811 359 YISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATA 437 (608)
T ss_pred cccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecCCccHHH
Confidence 256788889999999999999999999999999999999985 666788899999764332 22567899999996 679
Q ss_pred HHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHhhcc------CCcccc--ccCCCCCcchhHHHHHH
Q psy852 424 LKLWFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR------DPRFEI--SNDVRSSASECIFVCML 481 (891)
Q Consensus 424 l~~w~~l~~~--g~~G~~~ii~~~lelAr~l~~~L~~------~~~~eV--v~~itsggsean~~al~ 481 (891)
+++|+++|.+ |.+||++++++++++|+++++.|++ .+.|++ +.+ ++.|++|+.
T Consensus 438 lklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~-----pdlniV~Fr 500 (608)
T TIGR03811 438 ASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTK-----PDFNMVDYV 500 (608)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCC-----CCcceEEEE
Confidence 9999999998 9999999999999999999999988 455665 332 455555543
No 7
>KOG0629|consensus
Probab=100.00 E-value=2.4e-54 Score=468.23 Aligned_cols=342 Identities=24% Similarity=0.377 Sum_probs=304.7
Q ss_pred hhHhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy852 5 FHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGK 84 (891)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~ 84 (891)
-+..+..++...||||++...++..+.++.|.+++++.|+|.++|+.+|.++.+|.+|+..+.+++||+.+ ||
T Consensus 89 cr~tl~y~vKTgHprffNQl~~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~-------~D 161 (510)
T KOG0629|consen 89 CRDTLKYSVKTGHPRFFNQLSSGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG-------GD 161 (510)
T ss_pred HHHHHHhhhccCCCcchhhhccCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC-------CC
Confidence 34567888999999999999999999999999999999999999999999999999999999999999975 57
Q ss_pred CCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcccc-cc-ccCCeEEEecCCCChHHHHHHHHc
Q psy852 85 NATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDE-GV-LLSKLMAYCSKEAHSCVEKAAMMA 162 (891)
Q Consensus 85 g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~-g~-~~~~~~v~~S~~~H~Sv~kaa~~~ 162 (891)
|||+| ||++ +|++++++||.+ .+|++++ |. ..+.+++|+|+++|||+.|++.+.
T Consensus 162 gIf~p---------------------ggsi-sn~Ya~~~Aryk--~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l 217 (510)
T KOG0629|consen 162 GIFAP---------------------GGSI-SNMYAMNCARYK--NFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL 217 (510)
T ss_pred ceecC---------------------Cchh-HHHHHHHHHHhh--cCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh
Confidence 88876 7776 578889999987 4888775 44 578999999999999999999643
Q ss_pred ---CCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCcc
Q psy852 163 ---FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 163 ---~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
.++++.|++|+.|.|++++||+.|.+++++|..|++|++|+|||+.|+||||..|+++|++|++|+||||||||.++
T Consensus 218 g~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglL 297 (510)
T KOG0629|consen 218 GLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLL 297 (510)
T ss_pred ccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999877777777777666
Q ss_pred ccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccc
Q psy852 240 ICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET 319 (891)
Q Consensus 240 ~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (891)
+++.
T Consensus 298 mS~k---------------------------------------------------------------------------- 301 (510)
T KOG0629|consen 298 MSRK---------------------------------------------------------------------------- 301 (510)
T ss_pred cChh----------------------------------------------------------------------------
Confidence 5544
Q ss_pred ccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccc
Q psy852 320 RGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY 399 (891)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y 399 (891)
.|.++.|+++|||++.||||++++|..||++++|+..-|.......+.|
T Consensus 302 -------------------------------~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~Y 350 (510)
T KOG0629|consen 302 -------------------------------HRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIY 350 (510)
T ss_pred -------------------------------hHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhh
Confidence 4456678888999999999999999999999999888777777788999
Q ss_pred cCCCCC---CcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhH
Q psy852 400 LQHGHE---GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECI 476 (891)
Q Consensus 400 ~~~~~~---~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean 476 (891)
+..+.. ..+|.++.+++|+|+...+|+|..+|+-|..||++.+.+++++|+|+.++|++.++++.+.. +.+|..
T Consensus 351 LFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~---~~pe~~ 427 (510)
T KOG0629|consen 351 LFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFE---LEPEHV 427 (510)
T ss_pred hhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhc---CCCceE
Confidence 987643 66889999999999999999999999999999999999999999999999999999888865 457889
Q ss_pred HHHHHHHHHHH
Q psy852 477 FVCMLAARAQA 487 (891)
Q Consensus 477 ~~al~aAR~~~ 487 (891)
++|+|......
T Consensus 428 nv~fw~vp~~l 438 (510)
T KOG0629|consen 428 NVCFWYVPPSL 438 (510)
T ss_pred EEeeccCchHh
Confidence 99998865443
No 8
>PLN02263 serine decarboxylase
Probab=100.00 E-value=2.8e-48 Score=443.06 Aligned_cols=307 Identities=19% Similarity=0.219 Sum_probs=254.6
Q ss_pred hhhhHhhccCCCCCCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccCh---hHHHHHHHHHHHHHHHcCCCCCCCC
Q psy852 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASP---SCTELETIVLDWLGKAIGLPEKFLM 78 (891)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p---~~~~~E~~~~~~l~~l~g~~~~~~~ 78 (891)
.+.+.++|+.+| |+|| |...++ ++.+++++...+|+.|+.|..+| .++++|++|++|+++|+|+|+..
T Consensus 81 ~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~-- 152 (470)
T PLN02263 81 RYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNE-- 152 (470)
T ss_pred HHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCC--
Confidence 356677777777 8999 777777 89999999999999999999999 79999999999999999998642
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH
Q psy852 79 YPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 158 (891)
Q Consensus 79 ~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka 158 (891)
.|||+ |+|||+ +|+..+..||+.. ++.++|+|+++|||+.||
T Consensus 153 -----------------~~G~v--------tsGGTE-aNL~Al~aARe~~------------~~~vvy~S~~aH~Sv~KA 194 (470)
T PLN02263 153 -----------------YWGYI--------TNCGTE-GNLHGILVGREVF------------PDGILYASRESHYSVFKA 194 (470)
T ss_pred -----------------CeEEE--------eCcHHH-HHHHHHHHHHhhc------------CCcEEEEcCCccHHHHHH
Confidence 13343 578974 6788888899963 234799999999999999
Q ss_pred HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCC-----ceeeecc
Q psy852 159 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDV-----WLHVDGA 233 (891)
Q Consensus 159 a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~-----~lHvDaA 233 (891)
+++.+.+++.||+|++|+||+++|+++|+++. .+|++|++|+|||.+|+||||++|+++|+++|+ |+|||||
T Consensus 195 a~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA 271 (470)
T PLN02263 195 ARMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGA 271 (470)
T ss_pred HHhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEecc
Confidence 99888899999999999999999999998764 469999999999999999999999999999985 6666666
Q ss_pred ccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccc
Q psy852 234 YAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 313 (891)
Q Consensus 234 ~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (891)
|||+++.+.
T Consensus 272 ~GG~~lPf~----------------------------------------------------------------------- 280 (470)
T PLN02263 272 LFGLMMPFV----------------------------------------------------------------------- 280 (470)
T ss_pred chhhHhhhc-----------------------------------------------------------------------
Confidence 666543211
Q ss_pred ccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhc
Q psy852 314 HSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393 (891)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~ 393 (891)
+..+.+++...+|||++|+|||+++|++||++++|+.. ...+
T Consensus 281 ------------------------------------~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~--~~~~ 322 (470)
T PLN02263 281 ------------------------------------KRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVL 322 (470)
T ss_pred ------------------------------------ccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh--Hhhh
Confidence 11122344455999999999999999999999999753 3567
Q ss_pred ccCccccCCCCCCcccccccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCc
Q psy852 394 VVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSA 472 (891)
Q Consensus 394 ~~~~~y~~~~~~~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsgg 472 (891)
..++.|+... +.+++|||++. ++++|++|+++|.+||++++++++++|+++.++|++. +++++.+
T Consensus 323 ~~~~~Yl~~~--------d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~----- 388 (470)
T PLN02263 323 SSNVEYLASR--------DATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLN----- 388 (470)
T ss_pred ccChHhhCCC--------CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeC-----
Confidence 7899999764 45899999984 8999999999999999999999999999999999987 6666644
Q ss_pred chhHHHHHH
Q psy852 473 SECIFVCML 481 (891)
Q Consensus 473 sean~~al~ 481 (891)
++++.++|.
T Consensus 389 p~s~~V~f~ 397 (470)
T PLN02263 389 ELSSTVVFE 397 (470)
T ss_pred CCceEEEEe
Confidence 445555553
No 9
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=439.31 Aligned_cols=327 Identities=25% Similarity=0.328 Sum_probs=280.7
Q ss_pred HhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q psy852 7 FLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA 86 (891)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~ 86 (891)
.+.+...++.||+++.|......++.+++..+.+.+|+|...|..+|.++++|+++++|+++|+|+|+.. .
T Consensus 51 ~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~-------~-- 121 (460)
T COG0076 51 LIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA-------S-- 121 (460)
T ss_pred hhcccccccCCcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCC-------c--
Confidence 3667778888999999999999999999999999999999999999999999999999999999999553 2
Q ss_pred CCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE
Q psy852 87 TTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 166 (891)
Q Consensus 87 ~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v 166 (891)
|.+|+|||+ +|+..+.+||++.........+.....+.|++|+.+|+|+.|++.+.|..+
T Consensus 122 -------------------G~~t~GgTe-an~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~ 181 (460)
T COG0076 122 -------------------GTFTSGGTE-ANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGL 181 (460)
T ss_pred -------------------eEEEcChHH-HHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCc
Confidence 345789985 566677777776431111111222345589999999999999999888899
Q ss_pred EEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCC
Q psy852 167 KILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 167 ~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
+.|++++ +++||+++|+++|++++..| +|++|+|||.+|++|||++|+++|+++++|+||||||||+++.+++++
T Consensus 182 ~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 182 RRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred eeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 9999888 89999999999999998766 799999999999999999999999999999999999999998766544
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
+
T Consensus 258 ~------------------------------------------------------------------------------- 258 (460)
T COG0076 258 G------------------------------------------------------------------------------- 258 (460)
T ss_pred c-------------------------------------------------------------------------------
Confidence 3
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 405 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~ 405 (891)
++..+++.||||++|+|||+++|++||++++||++.+...+...+.|+...
T Consensus 259 ---------------------------~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~-- 309 (460)
T COG0076 259 ---------------------------RWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG-- 309 (460)
T ss_pred ---------------------------hhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC--
Confidence 123467789999999999999999999999999988888888888888764
Q ss_pred CcccccccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHH
Q psy852 406 GAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLA 482 (891)
Q Consensus 406 ~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~a 482 (891)
...++++.+||.+ .++++|+.++++|.+||++++++++++|+++++.|++.+.|++++++ +.+.+|+..
T Consensus 310 ---~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-----~l~~V~fr~ 379 (460)
T COG0076 310 ---GIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-----ELPIVAFRL 379 (460)
T ss_pred ---CcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-----ccceEEEEc
Confidence 3457899999998 68999999999999999999999999999999999999889999873 566666654
No 10
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=100.00 E-value=9.2e-45 Score=415.65 Aligned_cols=377 Identities=16% Similarity=0.186 Sum_probs=291.6
Q ss_pred CCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCC--CCCCCCCCCCCCCCC
Q psy852 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPE--KFLMYPPQGKNATTP 89 (891)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~--~~~~~~~~~~g~~tp 89 (891)
..+..||+|++|+.+++... +.+++...+|+|...|..+|..+++|+++++|+++++|+++ +.. +
T Consensus 37 ld~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~--------~--- 103 (431)
T TIGR01788 37 LDGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEA--------V--- 103 (431)
T ss_pred hcCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCC--------e---
Confidence 36778999999998765544 57888888888877888889888999999999999999983 211 1
Q ss_pred CCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEE
Q psy852 90 NDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL 169 (891)
Q Consensus 90 ~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V 169 (891)
+.+|+|||+++++.+.. +|.+.... ...+|....++.||+|+.+|+||.|++.+.+.+++.|
T Consensus 104 ----------------g~~TsGgTEAn~~al~~-ar~~~~~~-~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i 165 (431)
T TIGR01788 104 ----------------GTSTIGSSEAIMLGGLA-MKWRWRKR-MEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREV 165 (431)
T ss_pred ----------------EEEechHHHHHHHHHHH-HHHHHHHH-HHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEE
Confidence 12368999876665433 44321000 0011221235689999999999999998777899999
Q ss_pred ecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc------CCceeeeccccCCccccC
Q psy852 170 EPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICP 242 (891)
Q Consensus 170 ~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~------~~~lHvDaA~GG~~~~~~ 242 (891)
|+|++ |+||+++|++.|+++ |++|++|+|||++|++|||++|+++|+++ ++|+||||||||+.+.+
T Consensus 166 ~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~- 238 (431)
T TIGR01788 166 PMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPF- 238 (431)
T ss_pred ecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHH-
Confidence 99986 599999999999876 57999999999999999999999999999 88999999998765411
Q ss_pred CCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccc
Q psy852 243 EFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGH 322 (891)
Q Consensus 243 ~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (891)
T Consensus 239 -------------------------------------------------------------------------------- 238 (431)
T TIGR01788 239 -------------------------------------------------------------------------------- 238 (431)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCC
Q psy852 323 IQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQH 402 (891)
Q Consensus 323 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~ 402 (891)
.+++.+..++ ++.+||+++|+|||+++|++||+|++|++..+...+...++|+..
T Consensus 239 ------------------------~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~ 293 (431)
T TIGR01788 239 ------------------------VYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGG 293 (431)
T ss_pred ------------------------hCCCchhhcC-CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCC
Confidence 0011111112 456899999999999999999999999864343322222222211
Q ss_pred CCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHH
Q psy852 403 GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLA 482 (891)
Q Consensus 403 ~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~a 482 (891)
.
T Consensus 294 ~------------------------------------------------------------------------------- 294 (431)
T TIGR01788 294 D------------------------------------------------------------------------------- 294 (431)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEE
Q psy852 483 ARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFF 562 (891)
Q Consensus 483 AR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~ 562 (891)
T Consensus 295 -------------------------------------------------------------------------------- 294 (431)
T TIGR01788 295 -------------------------------------------------------------------------------- 294 (431)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCccchhhhhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 563 VSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 563 VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
..+.++++||++
T Consensus 295 --------------------------------------------------------------------~~~~t~~~sR~g 306 (431)
T TIGR01788 295 --------------------------------------------------------------------EPTFTLNFSRPA 306 (431)
T ss_pred --------------------------------------------------------------------CCCcceecCchH
Confidence 001245557875
Q ss_pred -cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 643 -RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 643 -~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
+++++|+.|+.+|.+||+++++++++++++|.++|++.++|+++.+ +.+++|||++.+.+. .+..++++.++|+++
T Consensus 307 ~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~--~~~~~~~l~~~L~~~ 384 (431)
T TIGR01788 307 NQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDAD--PGYTLYDLSHRLRER 384 (431)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCC--CCcCHHHHHHHHHHC
Confidence 7889999999999999999999999999999999999999999987 799999999986431 123578899999999
Q ss_pred CcEE---EeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 721 GRLH---MVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 721 G~~~---~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
|+.+ .+++.+++..++ +++.++++.+.++.++++|++++.
T Consensus 385 G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~ 428 (431)
T TIGR01788 385 GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALA 428 (431)
T ss_pred CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 9874 556668888888 999999999999999999998874
No 11
>PLN03032 serine decarboxylase; Provisional
Probab=100.00 E-value=4.1e-42 Score=386.69 Aligned_cols=291 Identities=20% Similarity=0.238 Sum_probs=232.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccC---hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 16 QHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAAS---PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~---p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
++..|+||......-++++..|+....|+.+..+..+ ..+.++|+++++|+++++|+++... +|+
T Consensus 22 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~------~G~------ 89 (374)
T PLN03032 22 KSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEY------WGY------ 89 (374)
T ss_pred hhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccC------CEE------
Confidence 3567999998887778899999998887666665544 4799999999999999999986531 233
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD 172 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d 172 (891)
+|+|||+++ ...+..+|+.. ++.++|+|+.+|+|+.|++.+.+..++.||+|
T Consensus 90 ---------------fTsGGTEaN-l~al~~ar~~~------------~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d 141 (374)
T PLN03032 90 ---------------ITTCGTEGN-LHGILVGREVF------------PDGILYASRESHYSVFKAARMYRMEAVKVPTL 141 (374)
T ss_pred ---------------EeCchHHHH-HHHHHHHHHhC------------CCcEEEeCCCceeHHHHHHHHcCCCCeEeeeC
Confidence 468998754 45555677642 12369999999999999998777789999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC-----CceeeeccccCCccccCCCCcc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD-----VWLHVDGAYAGSSFICPEFRPF 247 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~-----~~lHvDaA~GG~~~~~~~~~~~ 247 (891)
++|+||+++|+++|+++. ..|++|++|+|||++|++|||++|+++|+++| +|+||||||||+.+.+.+.
T Consensus 142 ~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~--- 215 (374)
T PLN03032 142 PSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR--- 215 (374)
T ss_pred CCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC---
Confidence 999999999999998753 35899999999999999999999999999996 3667777766643211000
Q ss_pred CCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccc
Q psy852 248 MNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYR 327 (891)
Q Consensus 248 ~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (891)
T Consensus 216 -------------------------------------------------------------------------------- 215 (374)
T PLN03032 216 -------------------------------------------------------------------------------- 215 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCc
Q psy852 328 DAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGA 407 (891)
Q Consensus 328 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~ 407 (891)
.|. ++....+||+++|+|||+++|++||+|++|+.. ...+..+++|+...
T Consensus 216 --------------------~~~----~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~--~~~~~~~~~Yl~~~---- 265 (374)
T PLN03032 216 --------------------APE----VTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNSR---- 265 (374)
T ss_pred --------------------Ccc----cCCCcCCcEEEECcccccCCCcCeEEEEEEchh--hHhhccCCcccCCC----
Confidence 111 122235899999999999999999999999753 34466788998753
Q ss_pred ccccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 408 IDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 408 ~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
++|++|||+ ++++++|++|+++|.+||++++++++++|+++.++|++. +++++..
T Consensus 266 ----d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~ 321 (374)
T PLN03032 266 ----DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLN 321 (374)
T ss_pred ----CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEC
Confidence 579999997 579999999999999999999999999999999999885 6777644
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=100.00 E-value=3e-40 Score=373.43 Aligned_cols=299 Identities=20% Similarity=0.298 Sum_probs=236.5
Q ss_pred CCccccccCCCCCCH-HHHHHHHHHHhcCCCCCccccCh---hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 16 QHPRFHAYFPSGNSY-PSVLADMLSDAIGCIGFSWAASP---SCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 16 ~~p~~~~~~~~~~~~-~~~~~~~l~~~~n~~~~~~~~~p---~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
+||+++.++|...++ ++.+++++....|+.+.....+. .++++|+++++|+|+++|++++.. +|
T Consensus 20 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~------~G------ 87 (380)
T PRK02769 20 HNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNES------WG------ 87 (380)
T ss_pred HhhhcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCC------CE------
Confidence 478877777766666 79999999999887664433332 489999999999999999986531 22
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP 171 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~ 171 (891)
+ +|+|||++ |...+..+|+.. ++..||+|+.+|+|+.|++++.+.+.+.|++
T Consensus 88 -------~--------~TsGgTea-n~~a~~~ar~~~------------~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~ 139 (380)
T PRK02769 88 -------Y--------ITNGGTEG-NLYGCYLARELF------------PDGTLYYSKDTHYSVSKIARLLRIKSRVITS 139 (380)
T ss_pred -------E--------EecChHHH-HHHHHHHHHHhC------------CCcEEEeCCCceehHHHHHHHcCCCCceecc
Confidence 2 45899876 555566677642 1246999999999999999877778889999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcC---CceeeeccccCCccccCCCCccC
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD---VWLHVDGAYAGSSFICPEFRPFM 248 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~---~~lHvDaA~GG~~~~~~~~~~~~ 248 (891)
+++|+||+++|++.|+++ |..|.+|++|+|||++|++|||++|+++|+++| +|+||||||||+.+.+.+..
T Consensus 140 ~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~--- 213 (380)
T PRK02769 140 LPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNP--- 213 (380)
T ss_pred CCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCcc---
Confidence 999999999999999876 667899999999999999999999999999998 58888888877654221100
Q ss_pred CCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccc
Q psy852 249 NGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRD 328 (891)
Q Consensus 249 ~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (891)
T Consensus 214 -------------------------------------------------------------------------------- 213 (380)
T PRK02769 214 -------------------------------------------------------------------------------- 213 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcc
Q psy852 329 AIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 408 (891)
Q Consensus 329 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~ 408 (891)
+.++....+||+++|+|||+++|++||++++|++. + ..+..++.|+..
T Consensus 214 ------------------------~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~------ 261 (380)
T PRK02769 214 ------------------------PPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-V-ERISVDVDYIGS------ 261 (380)
T ss_pred ------------------------ccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-h-hhcccCccccCC------
Confidence 01111225899999999999999999999999754 2 234456777753
Q ss_pred cccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHH
Q psy852 409 DYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCM 480 (891)
Q Consensus 409 ~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al 480 (891)
.+++++|||+ ++++++|++|+++|.+|+++++++++++++|+.++|++ .+++++.+ +.++.++|
T Consensus 262 --~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~~~-----p~~~~v~f 326 (380)
T PRK02769 262 --RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAWRN-----PNSITVVF 326 (380)
T ss_pred --CCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEcC-----CCceEEEE
Confidence 2568999997 57899999999999999999999999999999999987 58888865 34445554
No 13
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=2.8e-39 Score=364.88 Aligned_cols=255 Identities=31% Similarity=0.543 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc-ccceEEEecc
Q psy852 439 QKYIRRHCELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL-LSKLMAYCSK 513 (891)
Q Consensus 439 ~~ii~~~lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~-~~~~vI~~S~ 513 (891)
.....-+.++.+++.+.+.-...+ +-.|-+|+|||++|++|+++||+++.++.+. .|.. .++++||+|+
T Consensus 75 P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~------~~~~~~~~~~i~~s~ 148 (373)
T PF00282_consen 75 PAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKA------KGVEEIPKPVIYVSE 148 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHH------HTTTHCSSEEEEEET
T ss_pred cccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhh------ccccccccccccccc
Confidence 344556677788888887653211 2456689999999999999999999876542 2222 5789999999
Q ss_pred cchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh------
Q psy852 514 EAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------ 574 (891)
Q Consensus 514 ~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------ 574 (891)
++|||+.|+|.++|+.++.||+|++|+||+++|+++|+++.++|.+|++|++++|||. |.+
T Consensus 149 ~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlH 228 (373)
T PF00282_consen 149 QAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLH 228 (373)
T ss_dssp TS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEE
T ss_pred ccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999998 221
Q ss_pred -----------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC---CCCccccCC
Q psy852 575 -----------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---EGAIDYRHW 634 (891)
Q Consensus 575 -----------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~---e~~~~~~~~ 634 (891)
++.|+++||||++|+||||++|++||++++|++..+...+...+.|+.+.. ...+++.++
T Consensus 229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~ 308 (373)
T PF00282_consen 229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDY 308 (373)
T ss_dssp EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEG
T ss_pred ecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccc
Confidence 356789999999999999999999999999999988888888899998543 245678899
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEec
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLR 699 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~ 699 (891)
++++||++++|++|++|+.+|.+||++++++.+++|++|.++|++.+.|++++++.+++||||++
T Consensus 309 tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 309 TLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp SSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred cccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 14
>KOG0629|consensus
Probab=100.00 E-value=2.2e-35 Score=320.89 Aligned_cols=286 Identities=21% Similarity=0.299 Sum_probs=245.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccc-cccceEEEecccchHHHHHHHHHcC---ceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMMAF---VRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~-~~~~~vI~~S~~aH~Sv~Kaa~l~g---v~v~~Vp~d~~G~mD~ 543 (891)
+..||+-+|++++.+||.+..+..+. .|. ..+++++|+|+++|||+.|+|+++| -+++.|++|+.|.|++
T Consensus 164 f~pggsisn~Ya~~~Aryk~~Pe~K~------~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~ 237 (510)
T KOG0629|consen 164 FAPGGSISNMYAMNCARYKNFPEVKT------KGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIP 237 (510)
T ss_pred ecCCchhHHHHHHHHHHhhcCchhhh------hhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccch
Confidence 44599999999999999987766442 354 3679999999999999999998655 3899999999999999
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------------------hhcCCCCccEEEE
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----------------------KSQGIEYADSFNV 587 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----------------------~ldGi~~aDSIs~ 587 (891)
++||+.|-+.+++|.+|++|++|+|||. |.+ .+.|+++|||+|+
T Consensus 238 ~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~Svtw 317 (510)
T KOG0629|consen 238 DDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTW 317 (510)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceee
Confidence 9999999999999999999999999998 532 3678999999999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCC---CCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---EGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIR 664 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~---e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~ 664 (891)
+|||++++|..||++++|....|......++.||...+ +..++.++.+++|+|+.+.+|+|++|+.-|..|+++.++
T Consensus 318 npHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~ 397 (510)
T KOG0629|consen 318 NPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVD 397 (510)
T ss_pred cHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHH
Confidence 99999999999999999999888888888899998653 356788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCc----------chhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 665 RHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSEN----------NLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~----------~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+++++|+||.++|++.++++++.+ |+...|||++.|.. ...+....-.+..++..+|..+++...+..
T Consensus 398 k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~ 477 (510)
T KOG0629|consen 398 KCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGD 477 (510)
T ss_pred HHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEeccccc
Confidence 999999999999999999888644 78889999998863 123444555788889999999888777655
Q ss_pred CeEE--EEecC-CCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV--FELQE-RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l--~sv~~-~tT~edId~li~~L~ei~ 759 (891)
+.-+ .++++ ..+.+|+|.+++.|+.+.
T Consensus 478 ~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 478 KPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred ccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 5433 44444 679999999999998775
No 15
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=7.7e-34 Score=334.77 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHH-----HHhhhcc-----Ccc---------------
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQA-----ISKLKKI-----HPF--------------- 497 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~-----~~~~~~~-----~~~--------------- 497 (891)
.-+.++.+++.+++.=.+ -+|-+|+|||+||+.|||+||+.. .+..... .++
T Consensus 123 ~lE~~vi~~la~l~G~~~---~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~ 199 (608)
T TIGR03811 123 QMEEEVGKEFATLMGYKN---GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLE 199 (608)
T ss_pred HHHHHHHHHHHHHhCCCC---CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccccccc
Confidence 345566667777775322 246689999999999999999864 1110000 000
Q ss_pred ---------c----cccccccce-EEEecccchHHHHHHHHHcCc---eEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc
Q psy852 498 ---------V----DEGVLLSKL-MAYCSKEAHSCVEKAAMMAFV---RLKILEPDDKNSLRGATLRQVMQQDETMGYIP 560 (891)
Q Consensus 498 ---------~----~~g~~~~~~-vI~~S~~aH~Sv~Kaa~l~gv---~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip 560 (891)
. ..|....++ ++++|+.+|||+.|||.++|+ +++.||+|++++||+++|+++|+++.++|..|
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~ 279 (608)
T TIGR03811 200 SAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPI 279 (608)
T ss_pred ccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCe
Confidence 0 011122333 799999999999999998877 69999999999999999999999999999999
Q ss_pred EEEEecCCccc-------------hh---h-------h------------------------------------------
Q psy852 561 FFVSTTLGTTS-------------CY---R-------K------------------------------------------ 575 (891)
Q Consensus 561 ~~VvataGTT~-------------c~---~-------~------------------------------------------ 575 (891)
++|++++|||. |. + |
T Consensus 280 ~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~ 359 (608)
T TIGR03811 280 LGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEY 359 (608)
T ss_pred EEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccccccccccc
Confidence 99999999998 31 1 2
Q ss_pred --------hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc-cccCCccccccc-ccch
Q psy852 576 --------SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI-DYRHWGIPLSRR-FRSL 645 (891)
Q Consensus 576 --------ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~-~~~~~ti~~SRr-~~aL 645 (891)
++|+++|||||+|||||+++|++||++++|++. +...+...+.|+.......+ ..+.+++++||+ ++++
T Consensus 360 l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~Al 438 (608)
T TIGR03811 360 ISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAA 438 (608)
T ss_pred ccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecCCccHHHH
Confidence 225689999999999999999999999999995 66778889999975432222 457789999996 8899
Q ss_pred HHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhcc------CCCcEE--eCCCceeEEEEEecCCcc---hhhhhhHHH
Q psy852 646 KLWFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR------DPRFEI--SNDVRLGLVCFRLRSENN---LIADQNNRK 712 (891)
Q Consensus 646 ~lW~~L~~l--G~~G~~~~i~~~~~lA~~L~~~L~~------~~~~ei--l~~~~~~iV~Fr~~~~~~---~~~d~ln~~ 712 (891)
++|++++.+ |.+||++++++++++|++|.+.|++ .+.|++ +.+|++++|||||.+.+. +..|.+|++
T Consensus 439 klW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~~n~ln~~ 518 (608)
T TIGR03811 439 SVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVKMNKLNHA 518 (608)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHHHHHHHHH
Confidence 999999999 9999999999999999999999988 567887 789999999999988764 468999999
Q ss_pred HHHHHH
Q psy852 713 LLEDIN 718 (891)
Q Consensus 713 L~~~L~ 718 (891)
+.+++.
T Consensus 519 i~~~~~ 524 (608)
T TIGR03811 519 FYDYAS 524 (608)
T ss_pred HHHhhc
Confidence 999987
No 16
>PLN02263 serine decarboxylase
Probab=100.00 E-value=9.7e-34 Score=323.85 Aligned_cols=265 Identities=16% Similarity=0.145 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
-+.++-+++++++.--+ -+.+|-+|+||||+|++|+++||+.+ ++.++|+|+++|||+.|||
T Consensus 134 ~E~~Vi~wla~L~g~p~-~~~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa 195 (470)
T PLN02263 134 FEVGVLDWFARLWEIEK-NEYWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAA 195 (470)
T ss_pred HHHHHHHHHHHHhCCCC-CCCeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHH
Confidence 44566677777776422 14467799999999999999999953 2347999999999999999
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh----------hhcC--
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR----------KSQG-- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~----------~ldG-- 578 (891)
+++|++++.||+|++|+||+++|+++|++++ ..|++|++++|||. |.+ |+||
T Consensus 196 ~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~ 272 (470)
T PLN02263 196 RMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGAL 272 (470)
T ss_pred HhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccc
Confidence 9999999999999999999999999998864 46999999999998 321 3443
Q ss_pred ----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 579 ----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 579 ----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
.+.||||++|+|||+++|++||++++|++. ...+..++.|+... +.++.+||++
T Consensus 273 GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~--~~~~~~~~~Yl~~~--------d~ti~gSR~g 342 (470)
T PLN02263 273 FGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR--------DATIMGSRNG 342 (470)
T ss_pred hhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh--HhhhccChHhhCCC--------CCCcCCCCCc
Confidence 345999999999999999999999999753 35667788998763 3578999996
Q ss_pred -cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 643 -RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 643 -~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+++++|++|+.+|.+||++++++++++|++|.++|++. +++++.+|.+++|+|+-+.. . +..+|
T Consensus 343 ~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~~------~--------~~~~g 407 (470)
T PLN02263 343 HAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPKD------E--------EFVRR 407 (470)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCch------H--------Hhhcc
Confidence 58999999999999999999999999999999999997 77777788999999985321 0 12355
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+. ++. . +..+ ++++++.+.+.||+|+++|++..
T Consensus 408 W~-L~~---~-~~~~Hivvmphv~~~~id~fi~DL~~~~ 441 (470)
T PLN02263 408 WQ-LAC---Q-GNIAHVVVMPSVTIEKLDYFLKELVEKR 441 (470)
T ss_pred eE-Ecc---C-CCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 54 222 1 1347 88999899999999999998775
No 17
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=328.47 Aligned_cols=246 Identities=24% Similarity=0.310 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 440 KYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 440 ~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
....-+.++...+.+.+... -+..|.+|+||||||+.|+++||+++.+..... .+.....|+||+|..+|+|+
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~--~~~~G~~t~GgTean~lal~aar~~~~~~~~~~-----~~~~~~~P~ii~s~~aH~s~ 170 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAP--EEASGTFTSGGTEANLLALLAARERWRKRALAE-----SGKPGGKPNIVCSETAHFSF 170 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCC--CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc-----ccccCCCCeEEecCcchhHH
Confidence 45555666777777777653 256788999999999999999999998654321 23345678999999999999
Q ss_pred HHHHHHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------
Q psy852 520 EKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR----------- 574 (891)
Q Consensus 520 ~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~----------- 574 (891)
.|+|.++|++.+.+|+++ +++||+++|+++|++++..| +|++++|||. |.+
T Consensus 171 ~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~ 246 (460)
T COG0076 171 EKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAF 246 (460)
T ss_pred HHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccc
Confidence 999999999999999988 89999999999999998876 8999999997 211
Q ss_pred ------------h-hcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc
Q psy852 575 ------------K-SQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR 641 (891)
Q Consensus 575 ------------~-ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr 641 (891)
+ ..++++||||++|+|||+++|+|||++++||++.+.+.+.....|+... ...++++.+||+
T Consensus 247 GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~-----~~~~~ti~~sr~ 321 (460)
T COG0076 247 GGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG-----GIPNFTILGSRP 321 (460)
T ss_pred cceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC-----CcCceeEeeccc
Confidence 2 4678999999999999999999999999999988888888888888653 345788899997
Q ss_pred c-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCC
Q psy852 642 F-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSE 701 (891)
Q Consensus 642 ~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~ 701 (891)
. +++++|++++.+|.+||+++++++++++++|+++|++.+.|+++++|.+++||||+++.
T Consensus 322 ~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~ 382 (460)
T COG0076 322 GRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDD 382 (460)
T ss_pred hHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCc
Confidence 4 78999999999999999999999999999999999999999999999999999999543
No 18
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=100.00 E-value=6e-33 Score=308.54 Aligned_cols=187 Identities=34% Similarity=0.580 Sum_probs=151.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDY 99 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~ 99 (891)
|+++++++++.+++++++++..+|+|...|..+|..+++|+++.+|+++++|++... ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~------~~~~------------- 61 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSED------ADGV------------- 61 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCC------CCEE-------------
Confidence 688999999999999999999999999999999999999999999999999997221 1222
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc-ccc-ccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcc
Q psy852 100 MTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD-EGV-LLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSL 177 (891)
Q Consensus 100 ~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~-~g~-~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~i 177 (891)
+|+|||.. +...+..++.+.. +..+ .+. ..++.+|++|..+|+|+.+++...+.+++.|++|++|.+
T Consensus 62 --------~t~ggt~a-~~~al~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~ 130 (345)
T cd06450 62 --------FTSGGSES-NLLALLAARDRAR--KRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRM 130 (345)
T ss_pred --------EeCChhHH-HHHHHHHHHHHhh--hhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCc
Confidence 45788754 4444444444311 1111 011 123568999999999999999777889999999999999
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
|+++|++.+.++.++|..|.+|+++.++|.+|.++|+++|+++|+++|+|+|+|+||++
T Consensus 131 d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 131 DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 99999999998777777788999999999999999999999999999888888888743
No 19
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-31 Score=292.28 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=145.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHh---cCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDA---IGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~---~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
+-|++|-.+.+..|.++..|+..+ +++....|..+..+..+-.++.+++|+++|.++...
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eI----------------- 64 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEI----------------- 64 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeE-----------------
Confidence 569999999999999998887764 333344888899999999999999999999987532
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEEec
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEP 171 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~ 171 (891)
.||||||+++|+.+.+++...... ..+-.|++|..||.||..+++. .|.+|.++||
T Consensus 65 ------------iFTSG~TEsnNlaI~g~~~a~~~~---------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V 123 (386)
T COG1104 65 ------------IFTSGATESNNLAIKGAALAYRNA---------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123 (386)
T ss_pred ------------EEecCCcHHHHHHHHhhHHhhhcc---------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC
Confidence 278999999999988753322100 0112399999999999999953 4789999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|.+|++|+++|+++|++++ ++|++.++|||+|+++||++|+++|++++++||+||++
T Consensus 124 ~~~G~v~~e~L~~al~~~T------~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQ 180 (386)
T COG1104 124 DSNGLVDLEQLEEALRPDT------ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQ 180 (386)
T ss_pred CCCCeEcHHHHHHhcCCCc------eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhh
Confidence 9999999999999999884 79999999999999999999999999999999999988
No 20
>PLN03032 serine decarboxylase; Provisional
Probab=99.98 E-value=5.5e-31 Score=296.68 Aligned_cols=261 Identities=16% Similarity=0.175 Sum_probs=210.8
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.+..+++++.+...+. ++++-+||||||+|++|+++||+.. ++.++|+|+.+|+|+.|++++
T Consensus 69 ~~v~~~ia~llg~~~~-~~~G~fTsGGTEaNl~al~~ar~~~-----------------~~~~vi~s~~~H~Sv~kaa~~ 130 (374)
T PLN03032 69 VGVLDWFARLWELEKD-EYWGYITTCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARM 130 (374)
T ss_pred HHHHHHHHHHhCCCCc-cCCEEEeCchHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceeHHHHHHHH
Confidence 3444577777766443 5666799999999999999998742 123799999999999999999
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh----------hhcC----
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR----------KSQG---- 578 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~----------~ldG---- 578 (891)
++++++.||+|++|+||+++|+++|++++ ..|++|++++|||. |.+ |+|+
T Consensus 131 lg~~~~~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg 207 (374)
T PLN03032 131 YRMEAVKVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFG 207 (374)
T ss_pred cCCCCeEeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchh
Confidence 99999999999999999999999998753 25888888888886 322 4443
Q ss_pred --------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-cc
Q psy852 579 --------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FR 643 (891)
Q Consensus 579 --------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~ 643 (891)
...||||++|+|||+++|+|||++++|++. .+.+..++.|+... ++|+++||+ ++
T Consensus 208 ~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~--~~~~~~~~~Yl~~~--------d~ti~gSR~g~~ 277 (374)
T PLN03032 208 LMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNSR--------DATIMGSRNGHA 277 (374)
T ss_pred hhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh--hHhhccCCcccCCC--------CCcccCCCchHH
Confidence 245899999999999999999999999753 34566778898653 468999996 78
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
++++|++|+++|.+||++++++++++|++|.++|++. +++++.+|.+++|+|+-+.. + . +. +|+.
T Consensus 278 ~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~~-----~----~----~~-~~w~ 342 (374)
T PLN03032 278 PLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPMD-----E----A----FI-KKWQ 342 (374)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCCc-----H----h----Hh-heee
Confidence 9999999999999999999999999999999999985 78888888999999997521 1 1 22 3443
Q ss_pred EEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 724 HMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 724 ~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+++. +..+ ++++++++.+.||+|+++|++
T Consensus 343 -l~~~----~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 343 -LACE----GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -eccc----CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 2221 1267 999999999999999999875
No 21
>KOG0628|consensus
Probab=99.97 E-value=3.9e-31 Score=290.98 Aligned_cols=292 Identities=39% Similarity=0.612 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH
Q psy852 441 YIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 520 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~ 520 (891)
++.+.+.+-+.|...=.. +| -|-+++++||++++++++||.+.+++.+..+|...+.....++|+|||+++|+|++
T Consensus 121 WL~kml~LP~~Fl~~~~g-~G---gGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssve 196 (511)
T KOG0628|consen 121 WLGKMLGLPAEFLSLGLG-DG---GGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVE 196 (511)
T ss_pred HHHHHhcCcHHHhccCCC-CC---cceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHH
Confidence 344445555544443322 23 23467889999999999999999999887788888888899999999999999999
Q ss_pred HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-------------
Q psy852 521 KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------------- 574 (891)
Q Consensus 521 Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------------- 574 (891)
|||.++++++|.+|+|+++.|+.+.|+++|++|.++|++||+|++|.|||. |.+
T Consensus 197 ka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAG 276 (511)
T KOG0628|consen 197 KACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAG 276 (511)
T ss_pred HhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhcc
Confidence 999999999999999999999999999999999999999999999999998 211
Q ss_pred ----------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc
Q psy852 575 ----------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS 644 (891)
Q Consensus 575 ----------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a 644 (891)
.++|+++|||+++++|||+++.++|+.+++|++..+..++..++.||.+. . +.+ ..-
T Consensus 277 sa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~--~---------~~~--~~D 343 (511)
T KOG0628|consen 277 SAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHA--Y---------QGS--APD 343 (511)
T ss_pred ccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcch--h---------hcc--CCC
Confidence 36889999999999999999999999999999999988888999998752 0 000 011
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
++.|..-. ....++--++|.++..
T Consensus 344 yrhwqipl---------------------------------~rRfRSLKlWfv~R~~----------------------- 367 (511)
T KOG0628|consen 344 YRHWQIPL---------------------------------GRRFRSLKLWFVLRSY----------------------- 367 (511)
T ss_pred cccccccc---------------------------------ccchhhHHHHHHHHHH-----------------------
Confidence 11111110 0000000111111100
Q ss_pred EeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeecccchhhhhhhhHHHHH
Q psy852 725 MVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLE 804 (891)
Q Consensus 725 ~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~~~~~~~~~~~~~~~ 804 (891)
--+-+..-+..=.++++.|+++++....|+++++..+||||||+++. ++.|++++.
T Consensus 368 -------------------Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~-----N~~ne~Ll~ 423 (511)
T KOG0628|consen 368 -------------------GVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGD-----NEINEALLN 423 (511)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCC-----cHHHHHHHH
Confidence 11223333344456788899999999999999999999999999995 778889999
Q ss_pred HHHhhccccCCcccHHHHHhhhcccccccceEEEEecc
Q psy852 805 DINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMVS 842 (891)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (891)
.||.+|++|+++... +.-|+.||+-
T Consensus 424 ~in~~g~i~l~~~~l-------------~gk~vlRf~V 448 (511)
T KOG0628|consen 424 RLNSSGRIHLVPASL-------------HGKFVLRFAV 448 (511)
T ss_pred HHHhcCcEEEEEeee-------------cceEEEEEEe
Confidence 999999999998764 3458999864
No 22
>PRK02769 histidine decarboxylase; Provisional
Probab=99.97 E-value=5.7e-29 Score=281.73 Aligned_cols=263 Identities=16% Similarity=0.221 Sum_probs=211.8
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
+.+..+++++.+...++ ++++.+|+||||+|++++++||+.. +..+||+|+.+|+|+.|+++
T Consensus 67 e~~~~~~~a~l~g~~~~-~~~G~~TsGgTean~~a~~~ar~~~-----------------~~~~ii~s~~~H~Sv~ka~~ 128 (380)
T PRK02769 67 ERDVMNFFAELFKIPFN-ESWGYITNGGTEGNLYGCYLARELF-----------------PDGTLYYSKDTHYSVSKIAR 128 (380)
T ss_pred HHHHHHHHHHHhCCCCC-CCCEEEecChHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceehHHHHHH
Confidence 33555577777765433 4567799999999999999999732 12479999999999999999
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh--------hhcC-----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR--------KSQG----- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~--------~ldG----- 578 (891)
+++++.+.||++++|+||+++|+++|+++ +..|.+|++++|||. |++ |+||
T Consensus 129 ~lg~~~~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~ 205 (380)
T PRK02769 129 LLRIKSRVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGM 205 (380)
T ss_pred HcCCCCceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccce
Confidence 99999999999999999999999999886 556889999999987 322 2333
Q ss_pred -------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccc
Q psy852 579 -------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRS 644 (891)
Q Consensus 579 -------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~a 644 (891)
.+++|||++|+|||+++|+|||++++|++. + ..+.....|+.. .+.++++||+ +++
T Consensus 206 ~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~--------~d~t~~GSR~g~~~ 275 (380)
T PRK02769 206 ILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-V-ERISVDVDYIGS--------RDQTISGSRNGHTA 275 (380)
T ss_pred eecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-h-hhcccCccccCC--------CCCCccCCCCcHHH
Confidence 246999999999999999999999999763 2 234445677653 2458899996 789
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
+++|++|+.+|.+|++++++++++++++|.++|++ .+++++.+|.+++|+|+.+.. .+. +|+.
T Consensus 276 l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~~~p~~~~v~f~~~~~----------~~~-----~~w~- 338 (380)
T PRK02769 276 LLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAWRNPNSITVVFPCPSE----------RIW-----KKWH- 338 (380)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCceEEEEcCCCH----------HHH-----hCee-
Confidence 99999999999999999999999999999999988 589999999999999986421 121 4433
Q ss_pred EeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++. +..+ +++++++|.+.||.++++|.+..
T Consensus 339 l~~~----~~~~hi~~~~~~~~~~~~~f~~dl~~~~ 370 (380)
T PRK02769 339 LATS----GNQAHIITMPHHNKQQIDSLIDELIFDL 370 (380)
T ss_pred Eccc----CCEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 2222 1367 99999999999999999998775
No 23
>PLN02590 probable tyrosine decarboxylase
Probab=99.96 E-value=4.1e-29 Score=292.19 Aligned_cols=290 Identities=26% Similarity=0.442 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH
Q psy852 445 HCELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 520 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~ 520 (891)
+.++.+++.+.+.--+.| .--+-+++||||||++|+++||+++.++... . ..++++||+|+++|+|+.
T Consensus 172 E~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~------~--~~~~~vvy~S~~aH~Sv~ 243 (539)
T PLN02590 172 EIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGK------T--LLPQLVVYGSDQTHSSFR 243 (539)
T ss_pred HHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcc------c--CCCCEEEEecCCchHHHH
Confidence 444555666666422211 1235579999999999999999987643210 1 236789999999999999
Q ss_pred HHHHHcCc---eEEEecCC--CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh--------
Q psy852 521 KAAMMAFV---RLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-------- 574 (891)
Q Consensus 521 Kaa~l~gv---~v~~Vp~d--~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-------- 574 (891)
|||+++|+ +++.||+| .+++||+++|+++|++++++|.+|++|++|+|||. |.+
T Consensus 244 KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVD 323 (539)
T PLN02590 244 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVD 323 (539)
T ss_pred HHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEe
Confidence 99998877 69999998 46899999999999999999999999999999998 322
Q ss_pred ---------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccc
Q psy852 575 ---------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 639 (891)
Q Consensus 575 ---------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~S 639 (891)
.++|+++||||++|+||||++|++||++++|++..+..++...+.|+....... +-....
T Consensus 324 aA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~----~~~~d~- 398 (539)
T PLN02590 324 AAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKK----DTVVNY- 398 (539)
T ss_pred cchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccccc----ccCCCc-
Confidence 367899999999999999999999999999999888888888888876432100 000000
Q ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 640 RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 640 Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
.. -.+++ +.+ | ..-++--.|+.
T Consensus 399 ------------~d---------------------------~~i~l-sRr------~------------raLklW~~lr~ 420 (539)
T PLN02590 399 ------------KD---------------------------WQISL-SRR------F------------RSLKLWMVLRL 420 (539)
T ss_pred ------------cc---------------------------cCCCC-CCc------h------------HHHHHHHHHHH
Confidence 00 00010 000 0 11122222222
Q ss_pred CCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeeccc--chhhhhh
Q psy852 720 SGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSE--NNVIADQ 797 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~--~~~~~~~ 797 (891)
- -.+-+.+.++..-++++.+.+.+++.+.|++..++.++||||||.+. .++..+.
T Consensus 421 ~-----------------------G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ 477 (539)
T PLN02590 421 Y-----------------------GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNE 477 (539)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHH
Confidence 1 33566777777778888888999999999999999999999999864 2344577
Q ss_pred hhHHHHHHHHhhccccCCcccHHHHHhhhcccccccceEEEEec
Q psy852 798 NNRKLLEDINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMV 841 (891)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (891)
.|++++++++.+|+..+.+... +.-++.||+
T Consensus 478 ln~~l~~~l~~~G~~~vs~t~~-------------~g~~~lR~~ 508 (539)
T PLN02590 478 RNRELLAAVNSTGKIFISHTAL-------------SGKFVLRFA 508 (539)
T ss_pred HHHHHHHHHHhCCCEEEEeeEE-------------CCEEEEEEE
Confidence 8899999999999998877653 234788885
No 24
>PLN02880 tyrosine decarboxylase
Probab=99.94 E-value=2e-26 Score=268.93 Aligned_cols=290 Identities=28% Similarity=0.442 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHhhccCCcc----ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 444 RHCELAKLFEGKVRRDPRF----EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~----eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
-+.++.+++.+.+.--+.+ .--+-+|+|||++|++|+++||+++.++... .+ .++++||+|+++|||+
T Consensus 123 lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~------~~--~~~~vv~~S~~aH~Sv 194 (490)
T PLN02880 123 LEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK------NA--LEKLVVYASDQTHSAL 194 (490)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc------cc--cCCeEEEEcCCchHHH
Confidence 3445566666666432221 1235588999999999999999987654221 11 3578999999999999
Q ss_pred HHHHHHcCc---eEEEecCCC--CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-------
Q psy852 520 EKAAMMAFV---RLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR------- 574 (891)
Q Consensus 520 ~Kaa~l~gv---~v~~Vp~d~--~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~------- 574 (891)
.|||+++|+ +++.||+|+ +++||+++|+++|++++++|.+|++|++|+|||. |++
T Consensus 195 ~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHV 274 (490)
T PLN02880 195 QKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHV 274 (490)
T ss_pred HHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEE
Confidence 999998877 489999975 6899999999999999999999999999999998 322
Q ss_pred ----------------hhcCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc
Q psy852 575 ----------------KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 575 ----------------~ldGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
.++|+++||||++|+||||++|++||++++|++..+...+...+.|+.+..+... .+...
T Consensus 275 DaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~----~~~~~ 350 (490)
T PLN02880 275 DAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQAN----SVVDY 350 (490)
T ss_pred ehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcccccc----CCCCh
Confidence 2577899999999999999999999999999887776777777778765322100 00000
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEE-eCCCceeEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEI-SNDVRLGLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~ei-l~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
..+.+ .+.. | +.+ ++.-.|
T Consensus 351 ------------------------------------------~~~~i~~~rr------~----------~al--klw~~l 370 (490)
T PLN02880 351 ------------------------------------------KDWQIPLGRR------F----------RSL--KLWMVL 370 (490)
T ss_pred ------------------------------------------hccCcCCCCc------c----------cHH--HHHHHH
Confidence 00000 0000 0 001 111111
Q ss_pred HhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeeccc--chhhh
Q psy852 718 NASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSE--NNVIA 795 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~--~~~~~ 795 (891)
+.- -.+-+.+.++..-++++.+.+.+++.+.|++..++.+++|||||.+. .+...
T Consensus 371 ~~~-----------------------G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~ 427 (490)
T PLN02880 371 RLY-----------------------GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNG 427 (490)
T ss_pred HHh-----------------------CHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhH
Confidence 111 23455666665557777777888888889888888999999999763 23345
Q ss_pred hhhhHHHHHHHHhhccccCCcccHHHHHhhhcccccccceEEEEec
Q psy852 796 DQNNRKLLEDINASGRLHMVPASFELQERKRKDDLAYKRSFFVRMV 841 (891)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (891)
+..|++++++++.+|+....... .++.+++|++
T Consensus 428 ~~~n~~l~~~l~~~g~~~v~~t~-------------~~g~~~lR~~ 460 (490)
T PLN02880 428 NKLNHDLLDAVNSSGKIFISHTV-------------LSGKYVLRFA 460 (490)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEE-------------ECCEEEEEEE
Confidence 67788889999988887765433 2345788875
No 25
>KOG1383|consensus
Probab=99.94 E-value=1e-25 Score=249.31 Aligned_cols=282 Identities=16% Similarity=0.176 Sum_probs=226.2
Q ss_pred HHHHHhcCC-CCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhH
Q psy852 36 DMLSDAIGC-IGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVI 114 (891)
Q Consensus 36 ~~l~~~~n~-~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~ 114 (891)
.+++..+|- |-...+..|..+++|.+++++++.||+-|++.. |-.|+||++
T Consensus 98 ~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~----------------------------g~~t~G~Se 149 (491)
T KOG1383|consen 98 KLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSC----------------------------GCGTVGGSE 149 (491)
T ss_pred hHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCcccc----------------------------Cccccccch
Confidence 344444444 555556899999999999999999999985522 223578886
Q ss_pred HHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcC
Q psy852 115 QSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMG 193 (891)
Q Consensus 115 ~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g 193 (891)
+ ....+...|.+.... .| ..++.+++++..|.++.|+++....+++.||+| .+.++|+...++.+++++
T Consensus 150 s-~l~~~k~~~~~r~~~----k~--I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNt--- 219 (491)
T KOG1383|consen 150 S-GLAAKKSYRNRRKAQ----KG--IDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENT--- 219 (491)
T ss_pred H-HHHHHHHHHHHHHhc----cC--CCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccce---
Confidence 5 333333333322110 01 234558888999999999999888899999999 789999999999999885
Q ss_pred CcceEEEeecccCccccccCHHHHHHHHHH-cCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcch
Q psy852 194 YIPFFVSTTLGTTSCCSFDNLAEIGPVAKE-FDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASE 272 (891)
Q Consensus 194 ~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~-~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~ 272 (891)
++|++.++++.+|.+||+++|.++.-+ |++++|||||.|||+... .++.
T Consensus 220 ---i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~---------------------~~~~------ 269 (491)
T KOG1383|consen 220 ---IMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPA---------------------GYLN------ 269 (491)
T ss_pred ---EEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccc---------------------cccC------
Confidence 799999999999999999999999998 999999999999988510 0000
Q ss_pred hHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCcccc
Q psy852 273 CIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFR 352 (891)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 352 (891)
..++.
T Consensus 270 ---------------------------------------------------------------------------~~~fd 274 (491)
T KOG1383|consen 270 ---------------------------------------------------------------------------EEEFD 274 (491)
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00111
Q ss_pred ccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChh-HHHHHHHHH
Q psy852 353 PFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIR 431 (891)
Q Consensus 353 ~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~-~l~~w~~l~ 431 (891)
. +..++.|++.|+||++++|.++|.+++|++..+...+..++.|++.- +...|+.+||++. .++.|++|.
T Consensus 275 F---r~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~------y~s~TlngSR~g~~va~~wa~~~ 345 (491)
T KOG1383|consen 275 F---RVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI------YASPTLNGSRPGSQVAAQWAALM 345 (491)
T ss_pred c---CCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc------ccCcccccCCcccHHHHHHHHHH
Confidence 1 23457899999999999999999999999998888888999999765 5578999999976 678999999
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC
Q psy852 432 TYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR 469 (891)
Q Consensus 432 ~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it 469 (891)
++|.+||.+..+++++.++.+.+.|+.+++|.+++++.
T Consensus 346 ~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~ 383 (491)
T KOG1383|consen 346 SLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPL 383 (491)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCc
Confidence 99999999999999999999999999999999998743
No 26
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-24 Score=242.99 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=127.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc---CCCC--CccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI---GCIG--FSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~---n~~~--~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~ 92 (891)
.|+++..++. .|..+.+.+...+ |.|. ..+..+..+++.+.++.+.+++++|.++ +.. +
T Consensus 24 vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eI--------v------ 88 (405)
T COG0520 24 VYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEI--------V------ 88 (405)
T ss_pred EEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeE--------E------
Confidence 5888877766 4544445555432 3333 3556677788999999999999999985 321 2
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-H---cCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M---AFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~---~~~~v~~ 168 (891)
||.|.|..-|.....+.+..+ +...|++|..+|+|..-+.. + .|.+++.
T Consensus 89 ---------------ft~~tT~aln~va~~l~~~~~------------~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~ 141 (405)
T COG0520 89 ---------------FTRGTTEALNLVARGLGRSLK------------PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRV 141 (405)
T ss_pred ---------------EeCChhHHHHHHHHHhhhhhc------------CCCEEEEccCcchhhHHHHHHHHHhcCcEEEE
Confidence 344555444444444443211 22349999999999987773 3 4779999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
||++++|.+|++++++.+.+.+ .+|++|+.+|.+|.+.|+++|+++|+++|+++-||||+
T Consensus 142 i~~~~~g~~~~~~~~~~i~~~T------klvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 142 IPLDDDGLLDLDALEKLITPKT------KLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EecCCCCCcCHHHHHHhcCCCc------eEEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 9999999999999999777764 59999999999999999999999999999999999998
No 27
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.93 E-value=2.4e-22 Score=248.46 Aligned_cols=242 Identities=14% Similarity=0.097 Sum_probs=167.8
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------h
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------C 572 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c 572 (891)
+.+|++|..+|.|+.+++.+.|++++.||+|.+|.+|+++|+++|+++. ..+..|+.+.++|. |
T Consensus 590 r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~i~ 666 (954)
T PRK05367 590 RDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICEIV 666 (954)
T ss_pred CCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHHHH
Confidence 3579999999999999999999999999999999999999999998641 23555555555554 2
Q ss_pred hh-----hhcCC-------------CCccEEEEcCcccCCcccccE-----EEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 573 YR-----KSQGI-------------EYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 573 ~~-----~ldGi-------------~~aDSIs~d~HK~L~~P~g~G-----~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
++ ++||. .+||++++|+|||+++|.|+| .+++|+. +.+.+.... .... .
T Consensus 667 h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~lpg~~---v~~~---~ 738 (954)
T PRK05367 667 HEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFLPGHP---VQIA---G 738 (954)
T ss_pred HHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccCCCCc---cCcC---C
Confidence 32 34442 458999999999999999855 9999853 333222111 0000 0
Q ss_pred cccCCcccccccc----cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe--CC--CceeEEEEEecCC
Q psy852 630 DYRHWGIPLSRRF----RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS--ND--VRLGLVCFRLRSE 701 (891)
Q Consensus 630 ~~~~~ti~~SRr~----~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil--~~--~~~~iV~Fr~~~~ 701 (891)
+....+...+.++ .+++.|+.++.+|.+|+++..+.++.+|+|+.++|++. +++. ++ +..+=++|++.+.
T Consensus 739 ~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~ 816 (954)
T PRK05367 739 GETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPL 816 (954)
T ss_pred CCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeecc
Confidence 0001122222333 34679999999999999999999999999999999874 4442 22 2233344554322
Q ss_pred cchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 702 NNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 702 ~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
. ...+..+..+.++|.+.|+...+-+ ......+ +++...++++|||+++++++++....
T Consensus 817 ~-~~~g~~~~di~krL~d~G~~~~t~~-~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~ 876 (954)
T PRK05367 817 K-ESTGITVDDIAKRLIDYGFHAPTMS-FPVAGTLMVEPTESESKAELDRFCDAMIAIRAEI 876 (954)
T ss_pred c-ccCCCCHHHHHHHHHHCCCeEeecC-CccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHH
Confidence 1 1112356789999999998755422 2224456 88998999999999999999887533
No 28
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.92 E-value=4e-24 Score=250.48 Aligned_cols=260 Identities=17% Similarity=0.177 Sum_probs=181.5
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc-------ccceEEEecccchHHHHHHHHHcCc---eEEEec
Q psy852 465 SNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL-------LSKLMAYCSKEAHSCVEKAAMMAFV---RLKILE 534 (891)
Q Consensus 465 v~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~-------~~~~vI~~S~~aH~Sv~Kaa~l~gv---~v~~Vp 534 (891)
.|-+++|||+||++|+++||++..+.........++|+. .++++||+|+.+|+|+.|+++++|+ +++.||
T Consensus 161 ~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp 240 (522)
T TIGR03799 161 LGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIK 240 (522)
T ss_pred CeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEE
Confidence 456899999999999999999876543211223334442 3578999999999999999998776 799999
Q ss_pred CCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------------------hhcC
Q psy852 535 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----------------------KSQG 578 (891)
Q Consensus 535 ~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----------------------~ldG 578 (891)
+|++|+||+++|+++|+++.+++..|++|++++|||. |++ .++|
T Consensus 241 ~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~g 320 (522)
T TIGR03799 241 TDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKG 320 (522)
T ss_pred eCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcC
Confidence 9999999999999999999888989999999999885 322 2567
Q ss_pred CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 579 IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 579 i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
+++||||++|+|||+++|+|||++++|++..+ +.+...+.|+ . . .++.
T Consensus 321 le~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl-----~----~----~~~~------------------ 368 (522)
T TIGR03799 321 IERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYI-----L----R----KGSK------------------ 368 (522)
T ss_pred chhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchh-----c----C----CCCC------------------
Confidence 78999999999999999999999999998543 3333333331 0 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFE 738 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~s 738 (891)
+..-..|.... +...-.+...|..
T Consensus 369 -------------------------------d~~~~~legsR------~~~al~lw~aL~~------------------- 392 (522)
T TIGR03799 369 -------------------------------DLGSHTLEGSR------PGMAMLVYAGLHI------------------- 392 (522)
T ss_pred -------------------------------ccccceeecCc------chHHHHHHHHHHH-------------------
Confidence 00000111100 0011112222221
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhhhccCcccccCCCcccceEEeecccc----------------hhhhhhhhHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLIADHPLQLGLVCFRLRSEN----------------NVIADQNNRKL 802 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~~~~~~~~gl~~~r~~~~~----------------~~~~~~~~~~~ 802 (891)
...+-++.+++...++++.+.+.+++.+.|++..++.++||||||.++. ++..+..|+++
T Consensus 393 ----lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i 468 (522)
T TIGR03799 393 ----IGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFI 468 (522)
T ss_pred ----HhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHH
Confidence 1345677888888888888999999999999888889999999997642 12234455566
Q ss_pred HHHHHhhccccCCc
Q psy852 803 LEDINASGRLHMVP 816 (891)
Q Consensus 803 ~~~~~~~~~~~~~~ 816 (891)
.++++.+|+.....
T Consensus 469 ~~~~~~~G~~~vs~ 482 (522)
T TIGR03799 469 QKRQREAGKSFVSR 482 (522)
T ss_pred HHHHHhcCCEEEEE
Confidence 66666666555443
No 29
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.92 E-value=1.4e-22 Score=227.79 Aligned_cols=172 Identities=22% Similarity=0.221 Sum_probs=126.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIED 98 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~ 98 (891)
||++.+.+. ..|.++..+...... +.......|...+++.++.+++++++|.+... ++
T Consensus 23 ~~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--------~~------------ 80 (371)
T PRK13520 23 RILSSMCTE-PHPIARKAHEMFLET-NLGDPGLFPGTAKLEEEAVEMLGELLHLPDAY--------GY------------ 80 (371)
T ss_pred HeeeeeecC-chHHHHHHHHHHHhc-CCCCcccCccHHHHHHHHHHHHHHHhCCCCCC--------eE------------
Confidence 578887665 455555444443322 22222223667888999999999999987542 12
Q ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCccc
Q psy852 99 YMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 178 (891)
Q Consensus 99 ~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id 178 (891)
+++||+.. +...+..++.... .++..|+++..+|+|+.+++...|.+++.||++++|.+|
T Consensus 81 ---------~~~ggt~a-~~~a~~~~~~~~~----------~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d 140 (371)
T PRK13520 81 ---------ITSGGTEA-NIQAVRAARNLAK----------AEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD 140 (371)
T ss_pred ---------EecCcHHH-HHHHHHHHHhhcc----------CCCceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCC
Confidence 34567644 4444444444210 012358899999999999987777899999999999999
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++|+++ +.+|+++.++|.+|.++|+++|+++|+++|+++|||+||+|+.
T Consensus 141 ~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~ 194 (371)
T PRK13520 141 VKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFV 194 (371)
T ss_pred HHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHH
Confidence 99999999765 3567788899999999999999999999999999999997654
No 30
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.91 E-value=1.4e-21 Score=219.92 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=131.6
Q ss_pred HhhccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q psy852 7 FLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA 86 (891)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~ 86 (891)
.+..+.++.+++|++.++.+.+..+ +...+..... .+.......|....++.++.+++++++|.++.. ++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--------~~ 80 (373)
T TIGR03812 11 EYRSEDLKYSDGRILGSMCTNPHPI-AVKAYDMFIE-TNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAY--------GY 80 (373)
T ss_pred HHHhcCCCCCCCcEEEEEeCCchHH-HHHHHHHHhh-cCCCCcccCccHHHHHHHHHHHHHHHhCCCCCC--------eE
Confidence 3566788889999999998765444 3333333322 221122234667889999999999999997542 11
Q ss_pred CCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE
Q psy852 87 TTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 166 (891)
Q Consensus 87 ~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v 166 (891)
.+.||+.. +...+...+...... .+...|+++..+|+++.+++...|.++
T Consensus 81 ---------------------~~~g~~~~-~~~~~~~~~~~~~~~--------~~g~~vl~~~~~h~~~~~~~~~~G~~~ 130 (373)
T TIGR03812 81 ---------------------IVSGGTEA-NIQAVRAAKNLAREE--------KRTPNIIVPESAHFSFEKAAEMLGLEL 130 (373)
T ss_pred ---------------------EeccHHHH-HHHHHHHHHHHHhcc--------CCCcEEEECCcchHHHHHHHHHcCCeE
Confidence 23466543 333332223210000 012358889999999999998778899
Q ss_pred EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 167 ~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+.++++.++.+|+++|++.+++++ ..++.+.++|.+|.++|+++|.++|+++|+|+|||+|||++.
T Consensus 131 ~~v~~~~~~~~d~~~l~~~l~~~~------~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~ 196 (373)
T TIGR03812 131 RYAPLDEDYTVDVKDVEDLIDDNT------IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFV 196 (373)
T ss_pred EEEeeCCCCCcCHHHHHHHHhhCc------EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHH
Confidence 999999999999999999997653 345555589999999999999999999999999999997643
No 31
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.90 E-value=3.5e-21 Score=234.61 Aligned_cols=164 Identities=19% Similarity=0.168 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhcCCCCCccccChh-----HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPS-----CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN 104 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~-----~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~ 104 (891)
....+.+++....+.....+...|. ..+++.+.-.|||++.|+|...+
T Consensus 498 k~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl--------------------------- 550 (939)
T TIGR00461 498 KLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISL--------------------------- 550 (939)
T ss_pred ccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCccc---------------------------
Confidence 3445667776667666656666676 88999999999999999995321
Q ss_pred CCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHH
Q psy852 105 QPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQ 184 (891)
Q Consensus 105 ~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~ 184 (891)
..++|+ +++++.+..+|..... .|. ..+.+|++|..+|.++.+++.+.|.+++.|++|++|.+|+++|++
T Consensus 551 ---~p~aGA-~gE~agL~aiR~y~~~-----rge-~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~ 620 (939)
T TIGR00461 551 ---QPNSGA-QGEYAGLRVIRSYHES-----RGE-NHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKN 620 (939)
T ss_pred ---CCchHH-HHHHHHHHHHHHHHHh-----cCC-CCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHH
Confidence 124554 4566666566654210 111 246779999999999999998888899999999999999999999
Q ss_pred HHHhhhhcCCcceEEEeecccCccccccC-HHHHHHHHHHcCCceeeeccc
Q psy852 185 VMQQDETMGYIPFFVSTTLGTTSCCSFDN-LAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 185 ~l~~~~~~g~~p~~V~~t~Gtt~~GavDp-l~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+++ .|..+.+|++|.+|| +|.++| |++|+++|+++|.++|||||+
T Consensus 621 ~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq 667 (939)
T TIGR00461 621 KAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGAN 667 (939)
T ss_pred HHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecC
Confidence 9985 233478999999999 799988 999999999998888888888
No 32
>KOG1383|consensus
Probab=99.89 E-value=1.3e-21 Score=216.87 Aligned_cols=289 Identities=13% Similarity=0.119 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
+..-+.-++.+.++++.++ ..+..|+|+||+.+.+-.+.|++.... +...+|.|+++...|.+++|+
T Consensus 120 ~~e~~~Vnm~~~L~~~~~~--~~g~~t~G~Ses~l~~~k~~~~~r~~~-----------k~I~~p~iv~~~~v~~a~eK~ 186 (491)
T KOG1383|consen 120 KLEAECVNMIANLFNAPSD--SCGCGTVGGSESGLAAKKSYRNRRKAQ-----------KGIDKPNIVTPQNVHAAFEKA 186 (491)
T ss_pred HHHHHHHHHHHHHhcCCcc--ccCccccccchHHHHHHHHHHHHHHhc-----------cCCCCccccchHHHHHHHHHH
Confidence 3344555667777776554 677889999999555555555544332 224688999999999999999
Q ss_pred HHHcCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccch------h-------h------hhc-----
Q psy852 523 AMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC------Y-------R------KSQ----- 577 (891)
Q Consensus 523 a~l~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c------~-------~------~ld----- 577 (891)
++++.++++.||.| .+++||+..+.++++++ ...|++.+|++.. . + |+|
T Consensus 187 a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eN------ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~Gg 260 (491)
T KOG1383|consen 187 ARYFEVELREVPLDEGDYRVDPGKVVRMIDEN------TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGG 260 (491)
T ss_pred HhhEEEEEEeeeccccceEecHHHHHHHhccc------eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCcc
Confidence 99999999999998 78999999999999986 4567777766651 0 0 222
Q ss_pred ---------------CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-
Q psy852 578 ---------------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR- 641 (891)
Q Consensus 578 ---------------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr- 641 (891)
+.+++.|||.|+||++++|.|.|++++|+++.+...+....+|+.. .+..+|+++||+
T Consensus 261 Fi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg------~y~s~TlngSR~g 334 (491)
T KOG1383|consen 261 FINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG------IYASPTLNGSRPG 334 (491)
T ss_pred ccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCc------cccCcccccCCcc
Confidence 3578999999999999999999999999999999989999999765 356889999997
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhH-HHHHHHHHhC
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNN-RKLLEDINAS 720 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln-~~L~~~L~~~ 720 (891)
+..+.+|++|..+|.+||.+..+++.+.+++|.+.|+++++|.++++|...++.|.-.. .+ -++.+.|.++
T Consensus 335 ~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~--------~~i~elsd~l~~~ 406 (491)
T KOG1383|consen 335 SQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND--------VNIFELSDLLRKK 406 (491)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc--------cchhhhhHHHHhc
Confidence 77889999999999999999999999999999999999999999999777666666432 33 3788888999
Q ss_pred CcEEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHHHHHHHhhhccCc
Q psy852 721 GRLHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRMLGLVCFRLRSENN 771 (891)
Q Consensus 721 G~~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~~~~~~~l~~~~~ 771 (891)
|..+-. +.-...+ +++ ..++.++-.|+++.+|++++ +.|.+.+.
T Consensus 407 GW~lna---lq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~----~el~~~p~ 452 (491)
T KOG1383|consen 407 GWILNA---LQFPAAIHICVTRVHAREDVADRFVADIRKVV----EELKSLPE 452 (491)
T ss_pred CcCccc---cCCCCceEEEEEeeeccHHHHHHHHHHHHHHH----HHHHhCCC
Confidence 987422 2222345 554 44666666899999999887 44444443
No 33
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.86 E-value=1.4e-17 Score=205.67 Aligned_cols=244 Identities=13% Similarity=0.037 Sum_probs=162.4
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hh
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CY 573 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~ 573 (891)
-+|++|..+|.++.+.+.+.|++++.||+|++|.+|+++|+++|++.+. ...+|+.+.+++. |+
T Consensus 617 ~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~iah 693 (993)
T PLN02414 617 NVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICDIIH 693 (993)
T ss_pred CEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999986321 1233433333332 22
Q ss_pred h-----hhcCC-------------CCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCCCCCcc
Q psy852 574 R-----KSQGI-------------EYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEGAID 630 (891)
Q Consensus 574 ~-----~ldGi-------------~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~ 630 (891)
+ .+||. -++|.+.+++|||+++|.| +|.+++|.. +.+.+ +.+.-..+.....
T Consensus 694 ~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~--L~p~l---Pg~~v~~~~~~~~ 768 (993)
T PLN02414 694 DNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVPTGGIPR 768 (993)
T ss_pred HcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh--hcccC---CCCccccCCCccc
Confidence 2 23432 3589999999999999987 999999874 33222 1111000000000
Q ss_pred ccCCccccccc-------ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--Cce--eEEEEEec
Q psy852 631 YRHWGIPLSRR-------FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRL--GLVCFRLR 699 (891)
Q Consensus 631 ~~~~ti~~SRr-------~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~--~iV~Fr~~ 699 (891)
.......|+++ .-++..|..++.+|.+|+++..++++.+|+|+.++|++..++...++ +.. .++.++
T Consensus 769 r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~-- 846 (993)
T PLN02414 769 PEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLR-- 846 (993)
T ss_pred ccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecc--
Confidence 00111123332 12357799999999999999999999999999999987443433333 212 234443
Q ss_pred CCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 700 SENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 700 ~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+. +.+.......+.++|.+.|+...+-+ ......+ ++++.+.+++|||+++++++++....
T Consensus 847 ~l-~~~~g~~~~di~krL~d~Gihapt~~-~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~ 908 (993)
T PLN02414 847 PF-KNTAGIEPEDVAKRLMDYGFHAPTMS-WPVPGTLMIEPTESESKAELDRFCDALISIREEI 908 (993)
T ss_pred cc-ccccCCCHHHHHHHHHHcCcEEeeec-cccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 11 00001234678899998888643322 2345566 99999999999999999999887533
No 34
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.85 E-value=1.6e-18 Score=196.22 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=123.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCC---ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGF---SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNI 96 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~---~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~ 96 (891)
|++|-.+++..+.++..+.....+..+. .+..++.+..+..++.+++++++|.+.+..
T Consensus 2 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i------------------- 62 (379)
T TIGR03402 2 YLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEI------------------- 62 (379)
T ss_pred cCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeE-------------------
Confidence 7888888888888877766554322222 233456677888899999999999864421
Q ss_pred cccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecCC
Q psy852 97 EDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPDD 173 (891)
Q Consensus 97 ~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d~ 173 (891)
.+++|||...++.+..+..... ++..|+++..+|+|+...+. ..|.+++.|++++
T Consensus 63 ----------~~t~~~t~a~~~al~~~~~~~~------------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~ 120 (379)
T TIGR03402 63 ----------IFTSGGTESDNTAIKSALAAQP------------EKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE 120 (379)
T ss_pred ----------EEeCcHHHHHHHHHHHHHHhcC------------CCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC
Confidence 1355776543433333221110 12358888999999877653 2578999999999
Q ss_pred CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 174 KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 174 ~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+++
T Consensus 121 ~g~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~ 175 (379)
T TIGR03402 121 EGRLDLEELRAAITDD------TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQ 175 (379)
T ss_pred CCcCCHHHHHHhcCCC------cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcc
Confidence 9999999999998654 468889999999999999999999999999999999988
No 35
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.83 E-value=3.4e-18 Score=195.51 Aligned_cols=170 Identities=14% Similarity=-0.005 Sum_probs=121.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCcc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~ 93 (891)
.|++|-.+++....++..+..... |+....+..++.+.++-..+.+.+++++|.+ +...
T Consensus 25 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v---------------- 88 (406)
T PRK09295 25 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEEL---------------- 88 (406)
T ss_pred EEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeE----------------
Confidence 799999888887888766655442 3323345556777777778999999999973 3211
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH----HHcCCeEEEE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKIL 169 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa----~~~~~~v~~V 169 (891)
.+++|+|...+..+..+.... ..+...|+++..+|+|..... ...+.+++.|
T Consensus 89 -------------~~t~g~t~~l~~~~~~~~~~~-----------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v 144 (406)
T PRK09295 89 -------------VFVRGTTEGINLVANSWGNSN-----------VRAGDNIIISEMEHHANIVPWQMLCARVGAELRVI 144 (406)
T ss_pred -------------EEeCCHHHHHHHHHHHhhhhc-----------CCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEE
Confidence 134555543232222221111 012234888899998864433 3467899999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++++|.+|+++|++.+.++ +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 145 ~~~~~~~~d~~~l~~~i~~~------t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~ 203 (406)
T PRK09295 145 PLNPDGTLQLETLPALFDER------TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQ 203 (406)
T ss_pred ecCCCCCCCHHHHHHhcCCC------cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEccc
Confidence 99999999999999988654 458999999999999999999999999999999999988
No 36
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.83 E-value=9.6e-19 Score=216.62 Aligned_cols=279 Identities=16% Similarity=0.119 Sum_probs=189.3
Q ss_pred CccccccCCCCCCHHHHHHHHHHHhcCCCCCccccChh-----HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 17 HPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPS-----CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~-----~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
+..++|+ .+....|.+. +.....+.....+-..|. ..+++.+...||++++|++...+ +
T Consensus 500 ~~i~lGs-ct~~~~p~~~--~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~~sl----------~--- 563 (954)
T PRK05367 500 SMIPLGS-CTMKLNAAAE--MIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDAVSL----------Q--- 563 (954)
T ss_pred ceeeCCc-CCCcCCHHHH--HHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCCEEE----------C---
Confidence 3445666 3433444333 333333333333444553 78999999999999999985321 0
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP 171 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~ 171 (891)
.+|| .+++++.+..+|.... .+ |. ..+.+|++|+.+|+|+.+++.+.|.+++.|++
T Consensus 564 -----------------~~~g-a~ge~agL~a~r~~~~-~~----G~-~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~ 619 (954)
T PRK05367 564 -----------------PNAG-AQGEYAGLLAIRAYHE-SR----GE-GHRDVCLIPSSAHGTNPASAVMAGMKVVVVAC 619 (954)
T ss_pred -----------------ccHH-HHHHHHHHHHHHHHhh-cc----CC-CCCCEEEEEchhhhhhHHHHHHCCCEEEEECC
Confidence 1234 3566555555564311 00 11 13567999999999999999888889999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCC
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~ 251 (891)
|.+|.+|+++|++++++.. ..++.|++|.+||..+..|||.+|+++|+++|+++|||||+++.+..
T Consensus 620 d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~----------- 685 (954)
T PRK05367 620 DENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVG----------- 685 (954)
T ss_pred CCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccC-----------
Confidence 9999999999999997641 23788999999998444599999999999999888888888432210
Q ss_pred cccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccccc
Q psy852 252 TSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIF 331 (891)
Q Consensus 252 ~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (891)
T Consensus 686 -------------------------------------------------------------------------------- 685 (954)
T PRK05367 686 -------------------------------------------------------------------------------- 685 (954)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCce-----EEEEeccccchhhcccCccccCCCCCC
Q psy852 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEG 406 (891)
Q Consensus 332 ~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g-----~~~~r~~~~~~~~~~~~~~y~~~~~~~ 406 (891)
+++ .+-..||.+.+|+|||+++|+++| .+.+|+. +. +|+.....+
T Consensus 686 ---------------l~~------pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~-------p~lpg~~v~ 735 (954)
T PRK05367 686 ---------------LAR------PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LA-------PFLPGHPVQ 735 (954)
T ss_pred ---------------CCC------hhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--cc-------ccCCCCccC
Confidence 000 011247999999999999999866 8998852 32 222221100
Q ss_pred -cccccccccCCCCCh----hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC
Q psy852 407 -AIDYRHWGIPLSRRF----RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 459 (891)
Q Consensus 407 -~~~~~~~~~~~sr~~----~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~ 459 (891)
..+....+...+.++ .+++.|+.++.+|.+|++++++.++.+|+|++++|.+.
T Consensus 736 ~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~ 793 (954)
T PRK05367 736 IAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH 793 (954)
T ss_pred cCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000011122233333 35679999999999999999999999999999999764
No 37
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.83 E-value=5.1e-19 Score=203.55 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=121.2
Q ss_pred HHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 447 ELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
+..+++++.|...+. =++++.+||||||||++|++++|.++..+.+. +|....+++||+|+.+|+|+.|++++
T Consensus 84 ~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~------~g~~~~~~~ii~s~~~H~sv~ka~~~ 157 (431)
T TIGR01788 84 RCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA------AGKPTDKPNLVMGSNVQVCWEKFARY 157 (431)
T ss_pred HHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCcEEEEcCcchHHHHHHHHH
Confidence 334467777765311 25777789999999999999999765433211 12222467999999999999999999
Q ss_pred cCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----------hhcC--
Q psy852 526 AFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----------KSQG-- 578 (891)
Q Consensus 526 ~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----------~ldG-- 578 (891)
++++++.||+|++ |+||+++|+++|+++ +++|++++|+|. |++ |+|+
T Consensus 158 lg~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq 231 (431)
T TIGR01788 158 FDVELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAAS 231 (431)
T ss_pred cCceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEeccc
Confidence 9999999999986 599999999999875 568888888876 322 2333
Q ss_pred -----------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC
Q psy852 579 -----------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD 617 (891)
Q Consensus 579 -----------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~ 617 (891)
+++|||+++|+|||+++|+|||++++|++..+.+.+...
T Consensus 232 ~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~ 287 (431)
T TIGR01788 232 GGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFH 287 (431)
T ss_pred HHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheec
Confidence 467899999999999999999999999885554444333
No 38
>KOG1549|consensus
Probab=99.82 E-value=3.3e-19 Score=198.77 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=144.0
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCccc--cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q psy852 13 THWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWA--ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN 90 (891)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~--~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~ 90 (891)
.|-..|-|+++-.+++..|.++..|+....+-.+..+. .+..+...-..+.+.+|+|+|-++...
T Consensus 39 ~~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dI------------- 105 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDI------------- 105 (428)
T ss_pred cCCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcE-------------
Confidence 34457889999999999999999888876543333332 344444434568999999999987632
Q ss_pred CccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-H--cCCeEE
Q psy852 91 DIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M--AFVRLK 167 (891)
Q Consensus 91 ~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~--~~~~v~ 167 (891)
.||+|+|+++|+.+..++|....+. +-.|++.+.+|.|+.++++ + .+..++
T Consensus 106 ----------------iFts~ATEs~Nlvl~~v~~~~~~~~----------~k~iitl~~eH~~v~~s~~~l~~~g~~Vt 159 (428)
T KOG1549|consen 106 ----------------VFTSGATESNNLVLKGVARFFGDKT----------KKHIITLQTEHPCVLDSCRALQEEGLEVT 159 (428)
T ss_pred ----------------EEeCCchHHHHHHHHHhhccccccc----------cceEEEecccCcchhHHHHHHHhcCeEEE
Confidence 3689999999998888887653211 1159999999999999994 3 467999
Q ss_pred EEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 168 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 168 ~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+||++.+|..|++.|++.|+.++ -+|++.+.|++.|.++||+||+++|+++++.+|+|||+
T Consensus 160 ~lpv~~~~~~d~~~~~~~i~~~T------~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 160 YLPVEDSGLVDISKLREAIRSKT------RLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred EeccCccccccHHHHHHhcCCCc------eEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 99999999999999999999975 59999999999999999999999999999999999999
No 39
>PLN02651 cysteine desulfurase
Probab=99.82 E-value=1.5e-18 Score=195.70 Aligned_cols=277 Identities=16% Similarity=0.107 Sum_probs=195.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCC----ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGCIGF----SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~----~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
|++|-.+++..+.++..+.....+..+. .+..++.+.++..++.+.+++++|.++...
T Consensus 2 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v------------------ 63 (364)
T PLN02651 2 YLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEI------------------ 63 (364)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 7888878888888887776655432222 333456677888889999999999875421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|||...++.+..+.+... .++..|+++..+|+|+...+. ..+.+++.|+++
T Consensus 64 -----------~~t~~~t~a~~~~l~~~~~~~~-----------~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~ 121 (364)
T PLN02651 64 -----------IFTSGATESNNLAIKGVMHFYK-----------DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK 121 (364)
T ss_pred -----------EEeCCHHHHHHHHHHHHHHhcc-----------CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC
Confidence 1456776554544443322211 012358889999999877763 246789999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
++|.+|+++|++.|+++ +.+|+++..+|.+|.++|+++|+++|+++|+++|||+|++....
T Consensus 122 ~~~~~d~~~l~~~i~~~------t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~------------- 182 (364)
T PLN02651 122 SDGLVDLDELAAAIRPD------TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI------------- 182 (364)
T ss_pred CCCcCCHHHHHHhcCCC------cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc-------------
Confidence 99999999999999764 35899999999999999999999999999999999998842110
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 183 -------------------------------------------------------------------------------- 182 (364)
T PLN02651 183 -------------------------------------------------------------------------------- 182 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccc
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 412 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 412 (891)
. + + ++.+ .+|.+++++||| ++|.++|++++|++... ...|.+.....+. .
T Consensus 183 -~------------~--~----~~~~-~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~----~l~p~~~g~~~~~-----~ 232 (364)
T PLN02651 183 -P------------V--D----VDDL-GVDLMSISGHKI-YGPKGVGALYVRRRPRV----RLEPLMSGGGQER-----G 232 (364)
T ss_pred -c------------c--C----cccC-CCCEEEechhhh-CCCCceEEEEEcCCCCC----CCCccccCCCccC-----C
Confidence 0 0 0 0111 369999999998 79999999999975321 1223332211110 0
Q ss_pred cccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhcc-CCccccccC
Q psy852 413 WGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISND 467 (891)
Q Consensus 413 ~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~-~~~~eVv~~ 467 (891)
+ -.|+.... .+++-.+++.+-. +..++.++..++++++.+.|.+ .++++++++
T Consensus 233 ~-~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~ 287 (364)
T PLN02651 233 R-RSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGP 287 (364)
T ss_pred c-cCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 1 13444443 4677788888765 4588899999999999999985 689999975
No 40
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.82 E-value=2e-17 Score=188.79 Aligned_cols=171 Identities=12% Similarity=-0.019 Sum_probs=121.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCC----CCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCI----GFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~----~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~ 92 (891)
..|++|-..++....++..+....-+.. ...+..+....+.-..+.+.+++++|.+ ++..
T Consensus 20 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i--------------- 84 (401)
T PRK10874 20 GVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNI--------------- 84 (401)
T ss_pred eEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEE---------------
Confidence 4699999888877777776655443222 2233345666778888999999999983 3211
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH----HHHHHcCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAAMMAFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~----kaa~~~~~~v~~ 168 (891)
.+++|+|..-++....+.... . .+.-.|+++..+|+|.. +.+...|.+++.
T Consensus 85 --------------~~~~~~t~~i~~~~~~~~~~~---~--------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 139 (401)
T PRK10874 85 --------------VWTRGTTESINLVAQSYARPR---L--------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVK 139 (401)
T ss_pred --------------EEECCHHHHHHHHHHHhhhcc---C--------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEE
Confidence 134455433232222222110 0 12234888899998853 333456789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|+++.+|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 140 v~~~~~~~~d~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 140 LPLGADRLPDVDLLPELITPR------TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred EecCCCCcCCHHHHHHhcCcC------cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 999999999999999998654 358889999999999999999999999999999999988
No 41
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.81 E-value=3.2e-17 Score=186.97 Aligned_cols=170 Identities=15% Similarity=0.030 Sum_probs=118.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCcc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~~ 93 (891)
.|+++-..+..+..++..+..... |+....+..++...+.-.++.+.+++++|.+. +. .
T Consensus 20 ~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~--------v-------- 83 (403)
T TIGR01979 20 VYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEE--------I-------- 83 (403)
T ss_pred EEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCe--------E--------
Confidence 588888777666666555443322 33333344456666677788899999999873 21 1
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH----HHHHcCCeEEEE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKIL 169 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k----aa~~~~~~v~~V 169 (891)
.+++|++..-+..+..+.+... .+...|+++..+|+|... .+...|.+++.|
T Consensus 84 -------------~~~~g~t~~l~~~~~~~~~~~~-----------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v 139 (403)
T TIGR01979 84 -------------VFTRGTTESINLVAYSWGDSNL-----------KAGDEIVISEMEHHANIVPWQLLAERTGATLKFI 139 (403)
T ss_pred -------------EEeCCHHHHHHHHHHHhhhhcC-----------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEE
Confidence 1344554322222222222110 122358888999998653 334567899999
Q ss_pred ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 170 EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 170 ~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++++|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+|+
T Consensus 140 ~~~~~~~~~~~~l~~~i~~~------~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 140 PLDDDGTLDLDDLEKLLTEK------TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198 (403)
T ss_pred ecCCCCCCCHHHHHHHhccC------CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchh
Confidence 99999999999999998654 468899999999999999999999999999888888888
No 42
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.81 E-value=2.2e-17 Score=186.03 Aligned_cols=170 Identities=16% Similarity=0.083 Sum_probs=122.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHh--c--CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDA--I--GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~--~--n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
|++|-..+...+.++..+...+ . |+-...+..++....+..++.+++++++|.+... ..
T Consensus 2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~v---------- 64 (373)
T cd06453 2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPD-------EI---------- 64 (373)
T ss_pred cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC-------eE----------
Confidence 7777777777777777666553 1 2223355667778888889999999999987221 01
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~ 171 (891)
.+++|++..-+..+..+.+.. .+...|+++..+|++...+ +...+.+++.|++
T Consensus 65 -----------~~~~g~t~a~~~~~~~l~~~~------------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (373)
T cd06453 65 -----------IFTRNTTEAINLVAYGLGRAN------------KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV 121 (373)
T ss_pred -----------EEeCCHHHHHHHHHHHhhhcC------------CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeec
Confidence 134566543333333333210 0122488889999997543 3345779999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|.+|.+|+++|++.+.++ +.+|+++..+|.+|.++|+++|.++|+++|++||+|+|++
T Consensus 122 ~~~~~~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~ 179 (373)
T cd06453 122 DDDGQLDLEALEKLLTER------TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179 (373)
T ss_pred CCCCCcCHHHHHHHhcCC------ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhh
Confidence 999999999999999753 4588899999999999999999999999998888888873
No 43
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.81 E-value=2.3e-17 Score=187.97 Aligned_cols=172 Identities=10% Similarity=-0.020 Sum_probs=121.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~ 92 (891)
..|++|-.+++....++..+..... |+....+..++...+.-..+.+.+++++|.+. +..
T Consensus 17 ~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i--------------- 81 (398)
T TIGR03392 17 TVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI--------------- 81 (398)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeE---------------
Confidence 3699998888777777666555432 22222344556667777889999999999852 211
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH----HHHHcCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k----aa~~~~~~v~~ 168 (891)
.+++|+|..-++....+.+.. . .+.-.|+++..+|+|... .+...|.+++.
T Consensus 82 --------------~~t~g~t~~l~~~~~~~~~~~---~--------~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 136 (398)
T TIGR03392 82 --------------VWTRGTTESINLVAQSYARPR---L--------QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVK 136 (398)
T ss_pred --------------EEeCChHHHHHHHHHHhhhcc---C--------CCCCEEEECCcchhHHHHHHHHHHHHcCcEEEE
Confidence 134566543333332222110 0 112248888999988533 33456789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|+++.++.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|++++
T Consensus 137 v~~~~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~ 197 (398)
T TIGR03392 137 LPIGADLLPDIRQLPELLTPR------TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQG 197 (398)
T ss_pred EecCCCCCcCHHHHHHHhccC------ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhh
Confidence 999989999999999998654 3588889999999999999999999999999999999883
No 44
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.81 E-value=7.4e-17 Score=182.90 Aligned_cols=172 Identities=15% Similarity=0.047 Sum_probs=115.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCC---CCCccccChhHHHHHHHHHHHHHHHcCCC-CCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGC---IGFSWAASPSCTELETIVLDWLGKAIGLP-EKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~---~~~~~~~~p~~~~~E~~~~~~l~~l~g~~-~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
||+|-.+++..+.++..+.....+. ....+..+......-++.+..+.+.+|.. .+. +
T Consensus 2 yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~---------------i--- 63 (382)
T TIGR03403 2 YLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDD---------------I--- 63 (382)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCe---------------E---
Confidence 7888877777777766665544321 11222333334444555666667767652 221 1
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|++...++....+.+.... . .++..|+++..+|+|+..++. ..|.+++.||++
T Consensus 64 -----------~~t~g~teal~~~~~~~~~~~~~-~--------~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~ 123 (382)
T TIGR03403 64 -----------IITSCATESNNWVLKGVYFDEIL-K--------GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN 123 (382)
T ss_pred -----------EEeCCHHHHHHHHHHHHHHhhcc-c--------CCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC
Confidence 14566654433322222211000 0 012348889999999988763 357899999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+|++
T Consensus 124 ~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~ 180 (382)
T TIGR03403 124 EQGTITAEQVREAITEK------TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQA 180 (382)
T ss_pred CCCCCCHHHHHHhcccC------CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhh
Confidence 99999999999988754 3588899999999999999999999999999889998873
No 45
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.80 E-value=3.1e-18 Score=196.80 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=169.5
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.|+....++....+++++++|.+.... +..++|||-.++...+..+|.++
T Consensus 99 gss~~~~l~~~~e~~~~~~~G~~~~~~----------------------------a~~v~~~Tg~al~laL~alr~~~-- 148 (444)
T TIGR03531 99 GSSLLYKLTNKLVKDFLKLLGLRSIKS----------------------------AFVVPLATGMSLSLCLSALRHKR-- 148 (444)
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCCCE----------------------------EEEECCHHHHHHHHHHHHcCCcC--
Confidence 456778999999999999999973210 01235665222222222233321
Q ss_pred CCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec---CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~---d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+ ..+.+|+ +..+|+|+.|++.+.|.+.+.|++ ++++.||+++|+++|++.. .+.+++|+.|.+|..
T Consensus 149 -~-------~gd~VI~-p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~--~kai~~Vv~Tp~t~~ 217 (444)
T TIGR03531 149 -P-------KAKYVIW-PRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIG--PDNILCVLSTTSCFA 217 (444)
T ss_pred -C-------CCCEEEE-ECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhcc--CCCEEEEEEcCCcCC
Confidence 0 1234454 456799999999988889999995 4668999999999998532 133566666777777
Q ss_pred cccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHh
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAIS 287 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (891)
.|..||+++|+++|++||+|+|+|+|||.....
T Consensus 218 ~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~----------------------------------------------- 250 (444)
T TIGR03531 218 PRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK----------------------------------------------- 250 (444)
T ss_pred CcchhCHHHHHHHHHHcCCEEEEECcCcCcChh-----------------------------------------------
Confidence 789999999999999999999999999631110
Q ss_pred hhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccc-cCCC--cccEE
Q psy852 288 KLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFM-NGIE--YADSF 364 (891)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~gi~--~~ds~ 364 (891)
+.+++ ++++ .+|++
T Consensus 251 ---------------------------------------------------------------~~~~~~~g~~~Grad~v 267 (444)
T TIGR03531 251 ---------------------------------------------------------------YMELINKAIKVGRVDAV 267 (444)
T ss_pred ---------------------------------------------------------------hhhhhhccccccCCCeE
Confidence 00000 1111 37999
Q ss_pred EEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHH
Q psy852 365 NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRR 444 (891)
Q Consensus 365 ~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~ 444 (891)
++|+||++.+|.++|+++++++..... +. ..|.... ....++++|+++..+|.+||++++++
T Consensus 268 v~s~hK~l~~pg~Gg~I~~~d~el~~~-i~--~~y~g~~---------------~~s~~~~~~~~ll~~G~~g~~~li~~ 329 (444)
T TIGR03531 268 VSSTDKNFMVPVGGAIIYSFDENFIQE-IS--KSYPGRA---------------SASPSLDVLITLLSLGSKGYLELLKE 329 (444)
T ss_pred EEeCccCCCCCCCEEEEEECCHHHHHH-HH--HhccCCC---------------CChHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999988765432 22 1222100 11247889999999999999999999
Q ss_pred HHHHHHHHHHhhccC
Q psy852 445 HCELAKLFEGKVRRD 459 (891)
Q Consensus 445 ~lelAr~l~~~L~~~ 459 (891)
..++++++.+.|.+.
T Consensus 330 ~~~~a~~l~~~L~~l 344 (444)
T TIGR03531 330 RKEMYKYLKELLQKL 344 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999763
No 46
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.78 E-value=1.1e-16 Score=184.17 Aligned_cols=171 Identities=11% Similarity=-0.046 Sum_probs=118.6
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc--CCC--CCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI--GCI--GFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~--n~~--~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~ 92 (891)
..|+++-.+++....++..+..... +.| ...+..++....+-.++.+.+++++|.++ ...
T Consensus 33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v--------------- 97 (424)
T PLN02855 33 LVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREI--------------- 97 (424)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEE---------------
Confidence 5799997777766777766555432 222 22333345555666788899999999853 211
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH----HHcCCeEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKI 168 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa----~~~~~~v~~ 168 (891)
.+++|+|..-+..+..++... . .+...|+++..+|+|...+. ...|.+++.
T Consensus 98 --------------~~t~g~t~al~~i~~~~~~~~---~--------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 152 (424)
T PLN02855 98 --------------VFTRNATEAINLVAYTWGLAN---L--------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKF 152 (424)
T ss_pred --------------EEeCCHHHHHHHHHHHhhhhc---C--------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEE
Confidence 134566533222222221110 0 12234888889999875443 345789999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|+++.++.+|+++|++.+.+. +-+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 153 v~~~~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 153 VGLTPDEVLDVEQLKELLSEK------TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred EecCCCCCcCHHHHHHHhccC------ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 999988899999999999653 458899999999999999999999999999999999988
No 47
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.74 E-value=1.5e-16 Score=181.92 Aligned_cols=278 Identities=17% Similarity=0.166 Sum_probs=187.7
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCCCCC----ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAIGCIGF----SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~----~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.|++|-.+++..+.++..+...+.+..+. .+..+..+.+.-..+.+.+++++|.+++..
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v---------------- 67 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREI---------------- 67 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE----------------
Confidence 579999988888888877776654322221 222233345667778899999999865421
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEe
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILE 170 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~ 170 (891)
.+++|||...+..+..+.+... .++..|+++..+|+|+..++. ..+.+++.|+
T Consensus 68 -------------~~~~g~t~a~~~~l~~l~~~~~-----------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~ 123 (402)
T TIGR02006 68 -------------VFTSGATESNNLAIKGIAHFYK-----------SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLP 123 (402)
T ss_pred -------------EEeCCHHHHHHHHHHHHHHhhc-----------CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEc
Confidence 2456776554443333322110 012358888999999988763 2478999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
++++|.+|+++|++.+.+. +.+|+++..+|.+|.++|+++|.++|+++|+++|+|+|++.....
T Consensus 124 ~~~~~~~d~~~l~~~l~~~------~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~---------- 187 (402)
T TIGR02006 124 PKSNGLIDLEELKAAIRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIP---------- 187 (402)
T ss_pred cCCCCcCCHHHHHHhcCCC------CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcc----------
Confidence 9999999999999988654 358999999999999999999999999999988899888321100
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 188 -------------------------------------------------------------------------------- 187 (402)
T TIGR02006 188 -------------------------------------------------------------------------------- 187 (402)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY 410 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~ 410 (891)
+ + +++ ..+|.+++++||+ ++|.++|++++++..... ..+.+.....+
T Consensus 188 ----------------~--~----~~~-~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~----~~~~~~g~~~~----- 234 (402)
T TIGR02006 188 ----------------I--N----VNE-LKVDLMSISGHKI-YGPKGIGALYVRRKPRVR----LEALIHGGGHE----- 234 (402)
T ss_pred ----------------c--C----ccc-cCCCEEEEehhhh-cCCCceEEEEEccCCCCC----CCceecCCCcc-----
Confidence 0 0 011 1479999999995 679999999999653221 12211111100
Q ss_pred ccccc-CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 411 RHWGI-PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 411 ~~~~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
..+ .++-.. ..+++-.+++.+- +++.++.++..++++++.+.|++.++++++++
T Consensus 235 --~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~ 290 (402)
T TIGR02006 235 --RGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGD 290 (402)
T ss_pred --CCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 011 133333 2345556666653 57888899999999999999998888877753
No 48
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.73 E-value=2.8e-16 Score=183.89 Aligned_cols=281 Identities=17% Similarity=0.173 Sum_probs=183.1
Q ss_pred cccccC-CCCCCHHHHHHHHHHHhcCCCCCcc---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q psy852 19 RFHAYF-PSGNSYPSVLADMLSDAIGCIGFSW---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~l~~~~n~~~~~~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~ 94 (891)
.|.+-- +.....|.+...++......+-..| ..+....++..++.+++++++|++...+
T Consensus 71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l----------------- 133 (481)
T PRK04366 71 GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTL----------------- 133 (481)
T ss_pred ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEE-----------------
Confidence 455554 3334556666666665211233344 2566677999999999999999974321
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK 174 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~ 174 (891)
..++|+. ..+..+.++|.... .+ |. .++..|+++..+|.+...++...|.+++.|+++++
T Consensus 134 -------------~~~~GA~-a~~~~l~~~r~~~~-~~----Gd-~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~ 193 (481)
T PRK04366 134 -------------QPAAGAH-GELTGLLMIRAYHE-AR----GD-TKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNED 193 (481)
T ss_pred -------------EeCcHHH-HHHHHHHHHHHHhh-cc----Cc-CCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCC
Confidence 1134432 22332233333110 00 00 02345888899999999998888889999999989
Q ss_pred CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcc
Q psy852 175 NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTS 253 (891)
Q Consensus 175 g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~ 253 (891)
|.+|+++|++.+.+++ .+|+++..| .+|.+ +|+++|+++|+++|+++|||+|+...++ |
T Consensus 194 ~~~D~e~L~~~i~~~t------~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~----------g--- 253 (481)
T PRK04366 194 GLVDLEALKAAVGEDT------AALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL----------G--- 253 (481)
T ss_pred CCcCHHHHHhhcccCC------eEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhc----------c---
Confidence 9999999999987653 467777776 78988 6999999999999988888888721100 0
Q ss_pred cccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccce
Q psy852 254 FDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDV 333 (891)
Q Consensus 254 ~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (891)
T Consensus 254 -------------------------------------------------------------------------------- 253 (481)
T PRK04366 254 -------------------------------------------------------------------------------- 253 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCce-----EEEEeccccchhhcccCccccCCCCCC-c
Q psy852 334 WLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEG-A 407 (891)
Q Consensus 334 ~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g-----~~~~r~~~~~~~~~~~~~~y~~~~~~~-~ 407 (891)
.+.+ +-..+|++++++|||+++|+++| ++++|++. ...+ .+..+....+. .
T Consensus 254 ------------~~~~-------~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~--~~~l--p~~~v~~~g~~~~ 310 (481)
T PRK04366 254 ------------KARP-------GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL--APFL--PVPVVEKDGDRYR 310 (481)
T ss_pred ------------cCCc-------cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhh--HhhC--CCCeeeccCCcee
Confidence 0000 11147999999999999998765 78888642 2212 11221111000 0
Q ss_pred ccc-cccccCCCCCh-----hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC
Q psy852 408 IDY-RHWGIPLSRRF-----RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 459 (891)
Q Consensus 408 ~~~-~~~~~~~sr~~-----~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~ 459 (891)
... +...+.-.|.+ .++++|..+..+|.+|+++++++++++++|++++|.+.
T Consensus 311 l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 311 LDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred ecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 000 11122222322 35799999999999999999999999999999999876
No 49
>PRK02948 cysteine desulfurase; Provisional
Probab=99.73 E-value=3.3e-15 Score=169.23 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=124.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc---CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAI---GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~---n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.||++-.+++..+.++..+..... .+....+..+.....+...+.+.+++++|.+++..
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i------------------ 63 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGI------------------ 63 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 377887777777777766654332 23334556667778888899999999999865421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|++...++....+.+... .++..|+++..+|+|+...+. ..|.+++.|+++
T Consensus 64 -----------~~~~g~t~a~~~~~~~~~~~~~-----------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~ 121 (381)
T PRK02948 64 -----------YFTSGGTESNYLAIQSLLNALP-----------QNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD 121 (381)
T ss_pred -----------EEeCcHHHHHHHHHHHHHHhcc-----------CCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC
Confidence 1345665433322223322210 022358889999999977763 357799999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++|.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+++
T Consensus 122 ~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~ 177 (381)
T PRK02948 122 KSGLIRLVDLERAITPD------TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177 (381)
T ss_pred CCCCCCHHHHHHhcCCC------CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChh
Confidence 99999999999988643 459999999999999999999999999999999999876
No 50
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.73 E-value=2.8e-16 Score=177.45 Aligned_cols=287 Identities=17% Similarity=0.086 Sum_probs=196.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHhc----CCCCCccccChhHHHHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCCCCCCccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAI----GCIGFSWAASPSCTELETIVLDWLGKAIGLPE-KFLMYPPQGKNATTPNDIDM 94 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~-~~~~~~~~~~g~~tp~~~~~ 94 (891)
|+++-.+++.++.++..+..... |+....+..+....++-+++.+.+++++|.++ ...
T Consensus 2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v----------------- 64 (371)
T PF00266_consen 2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEV----------------- 64 (371)
T ss_dssp EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEE-----------------
T ss_pred EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCcccccc-----------------
Confidence 77887777788888777766543 33234556677778888899999999999987 321
Q ss_pred cccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH----HcCCeEEEEe
Q psy852 95 NIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILE 170 (891)
Q Consensus 95 ~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~----~~~~~v~~V~ 170 (891)
.+++++|..-+..+..+.+..+ ++..|+++..+|+|...++. ..+.+++.|+
T Consensus 65 ------------~~~~~~t~a~~~~~~~l~~~~~------------~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~ 120 (371)
T PF00266_consen 65 ------------VFTSNGTEALNAVASSLLNPLK------------PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIP 120 (371)
T ss_dssp ------------EEESSHHHHHHHHHHHHHHHGT------------TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ------------ccccccchhhhhhhhccccccc------------cccccccccccccccccccccccccchhhhcccc
Confidence 1345666533333333322111 22348888999999985552 3578999999
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
.+.+|.+|++++++.|.++ +.+|++++.+|.+|.+.|+++|+++|+++|+++++|++++-...
T Consensus 121 ~~~~~~~~~~~~~~~l~~~------~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~----------- 183 (371)
T PF00266_consen 121 ADPGGSLDLEDLEEALNPD------TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV----------- 183 (371)
T ss_dssp EGTTSSCSHHHHHHHHHTT------ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS-----------
T ss_pred ccccchhhhhhhhhhhccc------cceEEeecccccccEEeeeceehhhhhccCCceeEechhccccc-----------
Confidence 9999999999999999765 45999999999999999999999999999999999998721110
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 184 -------------------------------------------------------------------------------- 183 (371)
T PF00266_consen 184 -------------------------------------------------------------------------------- 183 (371)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchh-hcccCccccCCC--CCCc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS-ALVVDPLYLQHG--HEGA 407 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~-~~~~~~~y~~~~--~~~~ 407 (891)
. + ++ +. -.+|.+++++|| +++|.+.|++++|++..-.. .......|.... .+..
T Consensus 184 ---~------------i--d~----~~-~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (371)
T PF00266_consen 184 ---P------------I--DL----DE-LGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYG 240 (371)
T ss_dssp ---S----------------T----TT-TTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHC
T ss_pred ---c------------c--cc----cc-cccceeeecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcc
Confidence 0 0 00 11 147999999999 99999999999998532110 001111111000 0000
Q ss_pred ccccccccC-CCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 408 IDYRHWGIP-LSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 408 ~~~~~~~~~-~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
.....+.++ |+.+.. .+++..+++.+...|+.++.++..++++++.+.|.+.++++++++
T Consensus 241 ~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~ 302 (371)
T PF00266_consen 241 LADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGP 302 (371)
T ss_dssp HHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSS
T ss_pred cccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeee
Confidence 111122333 334443 467788899998999999999999999999999999999998864
No 51
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.73 E-value=3.9e-16 Score=175.05 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=188.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCC--CCC--ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 20 FHAYFPSGNSYPSVLADMLSDAIGC--IGF--SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~n~--~~~--~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
|+++-..++..+.++..+...+.+. |.. .+..+.....+..++.+++++++|.+.+..
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v------------------ 62 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEV------------------ 62 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeE------------------
Confidence 6777777777777777665554221 211 233455566778889999999999875421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH---HcCCeEEEEecC
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAFVRLKILEPD 172 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~---~~~~~v~~V~~d 172 (891)
.+++|++...+..+..+..... . ..+..|+++..+|+|+..+.. ..|.+++.|+++
T Consensus 63 -----------~~~~g~t~a~~~~l~~l~~~~~--~--------~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 121 (353)
T TIGR03235 63 -----------IFTSGATESNNLAILGLARAGE--Q--------KGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121 (353)
T ss_pred -----------EEeCCHHHHHHHHHHHHHHhcc--c--------CCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC
Confidence 1345665444443333322110 0 012358899999999977763 257799999999
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
+++.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|+++|+++|+++|+|+|++.....
T Consensus 122 ~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~------------ 183 (353)
T TIGR03235 122 ESGRIDVDELADAIRPD------TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT------------ 183 (353)
T ss_pred CCCcCCHHHHHHhCCCC------CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc------------
Confidence 99999999999988643 468999999999999999999999999999999999987321100
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 184 -------------------------------------------------------------------------------- 183 (353)
T TIGR03235 184 -------------------------------------------------------------------------------- 183 (353)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccc
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 412 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 412 (891)
+ +. + -..+|.+++++||| ++|.++|+++++++.... ....|.+......
T Consensus 184 --------------~--~~----~-~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~--~~~~~~~~~~~~~------- 232 (353)
T TIGR03235 184 --------------V--DL----S-ADRIDLISCSGHKI-YGPKGIGALVIRKRGKPK--APLKPIMFGGGQE------- 232 (353)
T ss_pred --------------c--cc----c-ccCCCEEEeehhhc-CCCCceEEEEEccCcccc--cccCceeeCCCCc-------
Confidence 0 00 0 01379999999998 689999999999763211 1123323221110
Q ss_pred ccc-CCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 413 WGI-PLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 413 ~~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
..+ .++... ..+++..+++.+ .+|..++.++..++++++.+.|.+ ++++++++
T Consensus 233 ~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~ 287 (353)
T TIGR03235 233 RGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGD 287 (353)
T ss_pred CccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCC
Confidence 011 233333 235566666665 368889999999999999999988 88888854
No 52
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.72 E-value=3.9e-15 Score=170.56 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=73.2
Q ss_pred EEEecCCCChHHHHHH----HHcCCeE----EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRL----KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v----~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~ 215 (891)
.|+++..+|.|+..++ ...|.++ +.++.+.+|.+|++++++.++... ..+.+|++++.++.+|.+.|++
T Consensus 115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~t~lv~~~~v~~~tG~~~~~~ 191 (406)
T TIGR01814 115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNG---DDIAVILLSGVQYYTGQLFDMA 191 (406)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcC---CCeEEEEEeccccccceecCHH
Confidence 5888899999976654 2345565 577778889999999999886431 2356999999999999999999
Q ss_pred HHHHHHHHcCCceeeecccc
Q psy852 216 EIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|++++||++++
T Consensus 192 ~i~~~~~~~g~~~~vD~aq~ 211 (406)
T TIGR01814 192 AITRAAHAKGALVGFDLAHA 211 (406)
T ss_pred HHHHHHHHcCCEEEEEcccc
Confidence 99999999999999999884
No 53
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.72 E-value=1.7e-15 Score=187.22 Aligned_cols=164 Identities=10% Similarity=-0.085 Sum_probs=104.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc-----CCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI-----GCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
-.||+|-.+++..+..+.+++...+ |+. ..+..+..++++-.++.+.+++++|.++... .-
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~------~V------- 100 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYFNAPPSDY------AC------- 100 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHhCCCccce------EE-------
Confidence 3699998777666666666655432 332 2344566678888889999999999865420 00
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKIL 169 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~V 169 (891)
.||+|.|...|+.+..+ + .+ +.-.|+++..+|.|+.-...+ .|.+++.|
T Consensus 101 --------------vFtsnaT~alnlva~~l--------~-~~-----~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v 152 (805)
T PLN02724 101 --------------VFTSGATAALKLVGETF--------P-WS-----SESHFCYTLENHNSVLGIREYALEKGAAAIAV 152 (805)
T ss_pred --------------EEeCChHHHHHHHHHHC--------C-CC-----CCCeEEEeeccccchHHHHHHHHHcCCeEEec
Confidence 24566664434332221 1 00 122477789999998754333 46789999
Q ss_pred ecC--------CCCcccH--HHHHHHHHh----hhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 170 EPD--------DKNSLRG--ATLRQVMQQ----DETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 170 ~~d--------~~g~id~--~~L~~~l~~----~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
+++ +.|.+++ ++|++.++. ....+..+-+|++++.+|++|.+.||+.|..+++.
T Consensus 153 ~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~ 220 (805)
T PLN02724 153 DIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDN 220 (805)
T ss_pred cchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHh
Confidence 887 5566655 667776431 11112234699999999999999999987655543
No 54
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.71 E-value=1.2e-15 Score=172.18 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=147.1
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.++..+. ...+.+++.|+++.++.+|+++|++.+++. +.+|+++..+|.+|.+.|+++|.+
T Consensus 88 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~ 161 (376)
T TIGR01977 88 HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGE 161 (376)
T ss_pred EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHH
Confidence 4788888999886543 334779999999999999999999988643 458889999999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++++|+|++....-
T Consensus 162 l~~~~~~~livD~a~~~g~~~----------------------------------------------------------- 182 (376)
T TIGR01977 162 LAQENGIFFILDAAQTAGVIP----------------------------------------------------------- 182 (376)
T ss_pred HHHHcCCEEEEEhhhccCccC-----------------------------------------------------------
Confidence 999999999999988421110
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCce
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSS 379 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g 379 (891)
+ ++. -..+|.+.+++|||+++|.++|
T Consensus 183 -----------------------------------------------~--~~~-----~~~~D~~~~s~~K~l~~p~g~g 208 (376)
T TIGR01977 183 -----------------------------------------------I--DMT-----ELAIDMLAFTGHKGLLGPQGTG 208 (376)
T ss_pred -----------------------------------------------C--Cch-----hcCCCEEEecccccccCCCCce
Confidence 0 000 0147999999999999999999
Q ss_pred EEEEeccccchhhcccCccccCCCCCCcccccccccC-CCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 380 CLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 380 ~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
++++++...+.........+-..... ......-.++ ++... ..++++.+++.+...|++++.++..++++++.+.|.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~ 287 (376)
T TIGR01977 209 GLYIREGIKLKPLKSGGTGSHSALID-QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLR 287 (376)
T ss_pred EEEEcCCcCcCceecCCCcccccccc-ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 99998875332211111111000000 0000000111 23333 356788999999999999999999999999999999
Q ss_pred cCCccccccC
Q psy852 458 RDPRFEISND 467 (891)
Q Consensus 458 ~~~~~eVv~~ 467 (891)
+.++++++++
T Consensus 288 ~~~~~~~~~~ 297 (376)
T TIGR01977 288 EINKVKIYGP 297 (376)
T ss_pred cCCCeEEeCC
Confidence 9899988864
No 55
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.69 E-value=2.8e-14 Score=162.36 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=117.9
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCC---CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIG---FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~---~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
.|+++-.+++..+.++..+...+..... ..+..+....++..++.+.+++++|.+....
T Consensus 19 ~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v------------------ 80 (397)
T TIGR01976 19 VFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEV------------------ 80 (397)
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeE------------------
Confidence 7888877777777777666655432211 2233344455677888999999999865421
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH----HHHcCCeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~ 171 (891)
.+++|++...+.....+.... .+...|+++..+|+|+... +...|.+++.+++
T Consensus 81 -----------~~~~~~t~~l~~~~~~~~~~~------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 137 (397)
T TIGR01976 81 -----------VFGANATSLTFLLSRAISRRW------------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARV 137 (397)
T ss_pred -----------EEeCCHHHHHHHHHHHHHhcC------------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEec
Confidence 123444432222222221111 1222478888899987643 3446789999999
Q ss_pred CC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 172 DD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 172 d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++ ++.+|+++|++.+.+. +.+|+++..+|.+|.+.|+++|+++|+++|+++++|+|+
T Consensus 138 ~~~~~~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 195 (397)
T TIGR01976 138 DEATGELHPDDLASLLSPR------TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH 195 (397)
T ss_pred cccCCCcCHHHHHHhcCCC------ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhh
Confidence 86 7999999999998654 358999999999999999999999999999999999987
No 56
>PRK14012 cysteine desulfurase; Provisional
Probab=99.66 E-value=8.3e-15 Score=167.69 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=121.0
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhc--CCCCCcccc----ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy852 18 PRFHAYFPSGNSYPSVLADMLSDAI--GCIGFSWAA----SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND 91 (891)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~l~~~~--n~~~~~~~~----~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~ 91 (891)
+.||+|-.+++..+.++..+..... +..+..+.. +-.+...-..+.+++++++|.+.+..
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v-------------- 69 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREI-------------- 69 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeE--------------
Confidence 4689998888777777776666443 332222211 11122344456788999999875421
Q ss_pred ccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH---cCCeEEE
Q psy852 92 IDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKI 168 (891)
Q Consensus 92 ~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~---~~~~v~~ 168 (891)
.+++|||...++.+..+.+... .+...|+++..+|+|+..++.. .+.+++.
T Consensus 70 ---------------~~~~g~t~al~~~l~~l~~~~~-----------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~ 123 (404)
T PRK14012 70 ---------------VFTSGATESDNLAIKGAAHFYQ-----------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123 (404)
T ss_pred ---------------EEeCCHHHHHHHHHHHHHHhhc-----------CCCCEEEEecCccHHHHHHHHHHHhCCCEEEE
Confidence 1356776544443333332110 0123488889999999877632 4779999
Q ss_pred EecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 169 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 169 V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
|++|++|.+|+++|++.|++. +.+|+++..+|.+|.+.|+++|.++|+++|+++|+|+|++
T Consensus 124 v~~~~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~ 184 (404)
T PRK14012 124 LDPQSNGIIDLEKLEAAMRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQS 184 (404)
T ss_pred EccCCCCcCCHHHHHHhcCCC------CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchh
Confidence 999999999999999999764 3589999999999999999999999999999999999883
No 57
>PLN02651 cysteine desulfurase
Probab=99.66 E-value=1.1e-14 Score=164.18 Aligned_cols=264 Identities=13% Similarity=0.125 Sum_probs=174.2
Q ss_pred HHHHHHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH
Q psy852 443 RRHCELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK 521 (891)
Q Consensus 443 ~~~lelA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K 521 (891)
...++.+ +.+++.+...++ +++ +++|+|++++.++..+.....+ ++..|+++..+|+++..
T Consensus 42 ~~~~~~~r~~la~~~g~~~~-~v~--~t~~~t~a~~~~l~~~~~~~~~---------------~g~~vl~~~~~h~s~~~ 103 (364)
T PLN02651 42 EDAVEKARAQVAALIGADPK-EII--FTSGATESNNLAIKGVMHFYKD---------------KKKHVITTQTEHKCVLD 103 (364)
T ss_pred HHHHHHHHHHHHHHhCCCCC-eEE--EeCCHHHHHHHHHHHHHHhccC---------------CCCEEEEcccccHHHHH
Confidence 3334434 466677765554 566 7889999999998876543211 12368899999999877
Q ss_pred HHH---HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhh-----hhcCC---
Q psy852 522 AAM---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYR-----KSQGI--- 579 (891)
Q Consensus 522 aa~---l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~-----~ldGi--- 579 (891)
.+. ..|++++.+|++++|.+|+++|+++|++++. .+++ .+..|+.. |++ ++|++
T Consensus 104 ~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~----lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~ 179 (364)
T PLN02651 104 SCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTA----LVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAV 179 (364)
T ss_pred HHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcE----EEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhh
Confidence 764 2478999999998999999999999976432 1222 23345444 443 24442
Q ss_pred ---------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc-chHHHH
Q psy852 580 ---------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWF 649 (891)
Q Consensus 580 ---------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~-aL~lW~ 649 (891)
-.+|++++++||| ++|.|+|++++|++..- . + .+.+...+.+. .+. .++.... .+.+..
T Consensus 180 g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~-~-l--~p~~~g~~~~~-----~~~-~GT~~~~~~~~l~~ 248 (364)
T PLN02651 180 GKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRV-R-L--EPLMSGGGQER-----GRR-SGTENTPLVVGLGA 248 (364)
T ss_pred CCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCC-C-C--CccccCCCccC-----Ccc-CCCccHHHHHHHHH
Confidence 2389999999998 68999999999986321 1 1 11111100000 000 1222222 345666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCC--Cc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISND--VR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~--~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+++.+-. +.+++.++..++++++.+.|++ +++++++++ ++ .++++|.+.+. ..+.+...|.+ +.
T Consensus 249 al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~--i~ 318 (364)
T PLN02651 249 ACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV-------EGESLLMGLKE--VA 318 (364)
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC-------CHHHHHHHhCC--EE
Confidence 7776654 4588888999999999999986 689999985 22 46999999754 35677777754 55
Q ss_pred EEeecccc-------------------CCeEE-EEecCCCCHHHHH
Q psy852 724 HMVPASQE-------------------QNDEV-FELQERKRKDDLA 749 (891)
Q Consensus 724 ~~s~s~~~-------------------g~~~l-~sv~~~tT~edId 749 (891)
+.+++.+. ...++ +|++++||++|||
T Consensus 319 v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 319 VSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 44444321 13467 9999999999986
No 58
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.65 E-value=9.5e-14 Score=155.59 Aligned_cols=136 Identities=18% Similarity=0.082 Sum_probs=99.7
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.+|...++..++.+++++++|.++... . .++++|+......+..+ ..
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~~~-------~---------------------~~~~~~t~al~~~~~~~--~~--- 72 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENGLT-------F---------------------LLSGSGTGAMEAALSNL--LE--- 72 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCE-------E---------------------EEecCcHHHHHHHHHHh--CC---
Confidence 577788888899999999999954321 0 13456654322222222 11
Q ss_pred CCccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
+.-.|+++..+|++. ...+...+.+++.|++|+++.+|+++|++.+++. .|.+|+++..+|.+
T Consensus 73 ----------~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~ 137 (356)
T cd06451 73 ----------PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH-----DIKAVTLTHNETST 137 (356)
T ss_pred ----------CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhcc-----CCCEEEEeccCCCc
Confidence 112366666788873 4455667789999999988999999999999752 14578888899999
Q ss_pred ccccCHHHHHHHHHHcCCceeeeccc
Q psy852 209 CSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 209 GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
|.+.|+++|.++|+++|+++++|+++
T Consensus 138 G~~~~~~~i~~~a~~~~~~li~D~~~ 163 (356)
T cd06451 138 GVLNPLEGIGALAKKHDALLIVDAVS 163 (356)
T ss_pred ccccCHHHHHHHHHhcCCEEEEeeeh
Confidence 99999999999999999999999977
No 59
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.65 E-value=1.1e-14 Score=180.27 Aligned_cols=248 Identities=15% Similarity=0.086 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..++-.++.++|++++|++.- .|+| ..++-|-.+.|+.+..+-+.+
T Consensus 566 ~~~~~~~~r~~la~i~g~~~v----------~f~p-----------------naga~ge~a~~~vi~~~~~~~------- 611 (993)
T PLN02414 566 YQEMFEDLGDLLCEITGFDSF----------SLQP-----------------NAGAAGEYAGLMVIRAYHLSR------- 611 (993)
T ss_pred HHHHHHHHHHHHHHHhCCCeE----------EEcC-----------------CCcHHHHHHHHHHHHHHHhcc-------
Confidence 456778899999999999432 2333 222234344444444331111
Q ss_pred ccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL 214 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl 214 (891)
|. ..+-+|++|..+|.|+..++.+.|.+++.|++|++|.+|+++|++.+++.+. .+.+|++|.+||..|.++||
T Consensus 612 --Gd-~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I 685 (993)
T PLN02414 612 --GD-HHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGI 685 (993)
T ss_pred --CC-CCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchH
Confidence 11 1345699999999999999988889999999999999999999999986321 25799999999999999999
Q ss_pred HHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCC
Q psy852 215 AEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHP 294 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (891)
++|+++|+++|+.++||||+. +++.
T Consensus 686 ~eI~~iah~~Galv~vDgAq~------------------------~a~~------------------------------- 710 (993)
T PLN02414 686 DEICDIIHDNGGQVYMDGANM------------------------NAQV------------------------------- 710 (993)
T ss_pred HHHHHHHHHcCCEEEEEecCH------------------------Hhcc-------------------------------
Confidence 999999999999999999981 0000
Q ss_pred ccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCc
Q psy852 295 FVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLT 374 (891)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~ 374 (891)
.+..| +-..+|.+.+++|||+++
T Consensus 711 --------------------------------------------------~l~~p-------~~~GaD~~~~s~HK~f~~ 733 (993)
T PLN02414 711 --------------------------------------------------GLTSP-------GFIGADVCHLNLHKTFCI 733 (993)
T ss_pred --------------------------------------------------CcCCc-------cccCCCEEEecCCccCCc
Confidence 00000 111479999999999998
Q ss_pred cCC-----ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh-------hHHHHHHHHHHhcHHHHHHHH
Q psy852 375 AFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-------RSLKLWFVIRTYGLSGLQKYI 442 (891)
Q Consensus 375 p~~-----~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~-------~~l~~w~~l~~~g~~G~~~ii 442 (891)
|.+ .|.+.+|+. +...+. ...-....+..+.....-.|++.. .++..|..++.+|.+|+.+..
T Consensus 734 P~G~GGPg~G~l~~~~~--L~p~lP---g~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a 808 (993)
T PLN02414 734 PHGGGGPGMGPIGVKKH--LAPFLP---SHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDAS 808 (993)
T ss_pred CcccCCCCeeeEEEchh--hcccCC---CCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHH
Confidence 886 899999863 322221 111001011011101111255442 245789999999999999999
Q ss_pred HHHHHHHHHHHHhhccC
Q psy852 443 RRHCELAKLFEGKVRRD 459 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~ 459 (891)
+.++.+|+|++++|...
T Consensus 809 ~~a~~nAnYl~~rL~~~ 825 (993)
T PLN02414 809 KIAILNANYMAKRLEGH 825 (993)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999763
No 60
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.65 E-value=5.4e-14 Score=158.63 Aligned_cols=277 Identities=11% Similarity=0.091 Sum_probs=182.0
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----H
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----A 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a 523 (891)
+.+.+++.+...+.-+|+ ++.|+++++..++.+. . .+.-.|+++..+|.++..+ +
T Consensus 49 ~~~~la~~~~~~~~~~v~--~~~g~t~al~~~~~~~----~---------------~~gd~vl~~~~~~~~~~~~~~~~~ 107 (376)
T TIGR01977 49 TRQLLAKLFNAPSSAHVV--FTNNATTALNIALKGL----L---------------KEGDHVITTPMEHNSVARPLECLK 107 (376)
T ss_pred HHHHHHHHhCcCCCCeEE--EeCCHHHHHHHHHHhc----c---------------CCCCEEEECcchhhHHHHHHHHHH
Confidence 334555565543332455 6778888887665441 1 1123577888899887544 3
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCC--------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi-------- 579 (891)
...|.+++.++.+.++.+|+++|++++++.+ ..++++. ..|... |+++ +|+.
T Consensus 108 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~----~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~ 183 (376)
T TIGR01977 108 EQIGVEITIVKCDNEGLISPERIKRAIKTNT----KLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPI 183 (376)
T ss_pred HHcCcEEEEEecCCCCCcCHHHHHHhcCCCC----eEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCC
Confidence 4458899999999889999999999996532 1222322 244443 4431 2321
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-cccc-ccchHHHHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRR-FRSLKLWFVIRT 653 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr-~~aL~lW~~L~~ 653 (891)
.++|++++++|||+++|.|+|+++++++..+.+.......+ ..............++ ++.. ...+.++.+++.
T Consensus 184 ~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~ 262 (376)
T TIGR01977 184 DMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGS-HSALIDQPSELPDRFESGTLNTPGIAGLNAGIKF 262 (376)
T ss_pred CchhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCcc-ccccccccccchhhccCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999999886433222111010 0000000000000011 1111 223678888999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhC-CcEEEeec
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINAS-GRLHMVPA 728 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s 728 (891)
+...|++++.++..++++++.+.|++.++++++.+. ..++++|++.+. ....+.+.|.+. |+....+.
T Consensus 263 ~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 263 IEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGL 335 (376)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEccc
Confidence 999999999999999999999999999999998642 367999998643 356788888877 87754433
Q ss_pred cc----------cCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 729 SQ----------EQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 729 ~~----------~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+ .....+ ++++.++|++|||+++++|++
T Consensus 336 ~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 336 HCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 21 123466 999999999999999999975
No 61
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.63 E-value=5.1e-14 Score=161.15 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=173.0
Q ss_pred HHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 444 RHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 444 ~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
..++.++ .+++.+...++ +|+ +++|+|+++..++...+....+ +...|+++..+|+++..+
T Consensus 47 ~~~~~~r~~la~~~g~~~~-~v~--~~~g~t~a~~~~l~~l~~~~~~---------------~g~~Vi~~~~~h~s~~~~ 108 (402)
T TIGR02006 47 EAVENARNQVAELIGADSR-EIV--FTSGATESNNLAIKGIAHFYKS---------------KGNHIITSKTEHKAVLDT 108 (402)
T ss_pred HHHHHHHHHHHHHhCCCCC-eEE--EeCCHHHHHHHHHHHHHHhhcC---------------CCCEEEECCCccHHHHHH
Confidence 3444444 56666665444 566 7789999999988765432111 223688889999999887
Q ss_pred HHH---cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC----
Q psy852 523 AMM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI---- 579 (891)
Q Consensus 523 a~l---~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi---- 579 (891)
+.. .|++++.||++++|.+|+++|+++|++.+ ..+++. +..|+.. |++ ++|++
T Consensus 109 ~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~----~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g 184 (402)
T TIGR02006 109 CRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDT----ILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVG 184 (402)
T ss_pred HHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCC----EEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcC
Confidence 643 48899999999999999999999997542 122222 2345544 433 23331
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-ccccc-cchHHHH
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRF-RSLKLWF 649 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr~-~aL~lW~ 649 (891)
..+|++++++||++ +|.|+|+++++++.... + .+.+...+.+ ..++ ++-.. ..+.+..
T Consensus 185 ~~~~~~~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~--~--~~~~~g~~~~-------~~~~~gt~~~~~~~al~~ 252 (402)
T TIGR02006 185 KIPINVNELKVDLMSISGHKIY-GPKGIGALYVRRKPRVR--L--EALIHGGGHE-------RGMRSGTLPTHQIVGMGE 252 (402)
T ss_pred CcccCccccCCCEEEEehhhhc-CCCceEEEEEccCCCCC--C--CceecCCCcc-------CCccCCCccHHHHHHHHH
Confidence 25899999999965 59999999999763221 0 1111000000 0011 11111 1234445
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--e-e--EEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--L-G--LVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~-~--iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
+++.+- +++.++.++..++++++.+.|++++++++++++. . + +|+|.. . ..+.+...| +++..
T Consensus 253 al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~-------~~~~~~~~l--~~i~v 320 (402)
T TIGR02006 253 AFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY--V-------EGESLIMAL--KDLAV 320 (402)
T ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC--c-------CHHHHHHhc--CCEEE
Confidence 555443 5788888899999999999999999998875432 2 3 355553 2 122344444 35443
Q ss_pred Eeecccc-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 725 MVPASQE-------------------QNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 725 ~s~s~~~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.+++.+. ...++ +|++++||++|||+++++|+++++.+.
T Consensus 321 ~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 321 SSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred echhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333221 13567 999999999999999999999885443
No 62
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.63 E-value=4.6e-14 Score=165.35 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=171.9
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHH
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV 549 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~a 549 (891)
++|+.+.+.++..+|....++ | ...+..|+++..+|++..+.+.+.|++++.+|++.+|.+|+++|+++
T Consensus 136 ~~GA~a~~~~l~~~r~~~~~~----------G-d~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~ 204 (481)
T PRK04366 136 AAGAHGELTGLLMIRAYHEAR----------G-DTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAA 204 (481)
T ss_pred CcHHHHHHHHHHHHHHHhhcc----------C-cCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhh
Confidence 455667777666666533211 0 01245699999999999999999999999999998999999999999
Q ss_pred HHhhhhcCCccEEEEe--cCCcc-c--------hhh-----hhcCC-------------CCccEEEEcCcccCCcccccE
Q psy852 550 MQQDETMGYIPFFVST--TLGTT-S--------CYR-----KSQGI-------------EYADSFNVNVNKWLLTAFDSS 600 (891)
Q Consensus 550 I~~d~~~g~ip~~Vva--taGTT-~--------c~~-----~ldGi-------------~~aDSIs~d~HK~L~~P~g~G 600 (891)
|+++++ .++|.+ ..|.. . |++ ++|+. .++|++++|+|||+++|.|+|
T Consensus 205 i~~~t~----~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~G 280 (481)
T PRK04366 205 VGEDTA----ALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGG 280 (481)
T ss_pred cccCCe----EEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCC
Confidence 976532 223322 34443 1 332 12321 358999999999999998765
Q ss_pred -----EEEEeCCccchhhhccCCCccc-cCCCCCccc-cCCccccccccc-----chHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 601 -----CLWVADRYKLTSALVVDPLYLQ-HGHEGAIDY-RHWGIPLSRRFR-----SLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 601 -----~llvR~~~~L~~~l~~~~~Yl~-~~~e~~~~~-~~~ti~~SRr~~-----aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
++++|++ +.+.+.. .... .+..-.... +...+.-.|.+. +++.|..++.+|.+|++++.++++.
T Consensus 281 gp~~G~l~~~~~--~~~~lp~--~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~ 356 (481)
T PRK04366 281 GPGSGPVGVKEE--LAPFLPV--PVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVL 356 (481)
T ss_pred CCCeeeeeehhh--hHhhCCC--CeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888765 2222210 0000 000000000 111111122222 4789999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-ccCCeEE-EEecCCCCH
Q psy852 669 LAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-QEQNDEV-FELQERKRK 745 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~~g~~~l-~sv~~~tT~ 745 (891)
+++||.++|+++ +++.. .+..+.+.|...... .-+..+.++.++|.+.|+....... ......+ ++++.++|+
T Consensus 357 ~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~ 432 (481)
T PRK04366 357 NANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLK--ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESK 432 (481)
T ss_pred HHHHHHHHhHhh--CcccCCCCeeEEEEEECcccc--ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCH
Confidence 999999999987 44432 233344444432110 0022567899999999986331110 1113356 999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy852 746 DDLAYKRSFFVRMLG 760 (891)
Q Consensus 746 edId~li~~L~ei~~ 760 (891)
+|||+++++|+++..
T Consensus 433 edid~l~~~l~~i~~ 447 (481)
T PRK04366 433 ETLDAFIAAMKQIAE 447 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 63
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.61 E-value=1.2e-13 Score=157.48 Aligned_cols=273 Identities=14% Similarity=0.083 Sum_probs=174.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC---ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 26 SGNSYPSVLADMLSDAIGCIGF---SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 26 ~~~~~~~~~~~~l~~~~n~~~~---~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
.++..++++..+........+. .+...........+..+.+|+++|.+..
T Consensus 29 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~--------------------------- 81 (387)
T PRK09331 29 GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEA--------------------------- 81 (387)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcE---------------------------
Confidence 3556666666665554322111 2333333334556667788888887532
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEec--CCCCcccHH
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNSLRGA 180 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~~g~id~~ 180 (891)
.+++||+......+..+. . +.-.|+++..+|+|+..++...|.+++.|++ |+++.+|++
T Consensus 82 ----~~~~g~t~a~~~al~~l~--~-------------~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 142 (387)
T PRK09331 82 ----RVTHGAREGKFAVMHSLC--K-------------KGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPE 142 (387)
T ss_pred ----EEeCCHHHHHHHHHHHhc--C-------------CCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHH
Confidence 134577644333333321 1 1224888899999999988778889999998 788999999
Q ss_pred HHHHHHHhhhh-cCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCC
Q psy852 181 TLRQVMQQDET-MGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHL 259 (891)
Q Consensus 181 ~L~~~l~~~~~-~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~ 259 (891)
+|++.+++..+ .+..+.+|+++..++.+|.+.|+++|+++|+++|+++|+|+|++...+
T Consensus 143 ~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~-------------------- 202 (387)
T PRK09331 143 AYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM-------------------- 202 (387)
T ss_pred HHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc--------------------
Confidence 99999976421 123467899999999999999999999999999999999998842110
Q ss_pred CcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeec
Q psy852 260 SPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDG 339 (891)
Q Consensus 260 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 339 (891)
| +|+
T Consensus 203 -------~---------------------------------------------------------------------~~~ 206 (387)
T PRK09331 203 -------P---------------------------------------------------------------------VDG 206 (387)
T ss_pred -------C---------------------------------------------------------------------CCH
Confidence 0 000
Q ss_pred cccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCC
Q psy852 340 AYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSR 419 (891)
Q Consensus 340 ~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr 419 (891)
.. ..+|.++.++|||+.+|.+.|++++++. ...........|.... ... ++ ..++
T Consensus 207 ------------~~-----~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~----~~~--~~-~~~~ 261 (387)
T PRK09331 207 ------------KK-----LGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKE----VEL--LG-CTLR 261 (387)
T ss_pred ------------HH-----cCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccc----eee--ec-eecC
Confidence 00 0369999999999999999998888753 2222112222222110 000 00 0122
Q ss_pred ChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 420 RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 420 ~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
...++.+++++..+-.. .+..++..++++++++.|++.++++++.+
T Consensus 262 ~~~~~~~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 262 GAPLVTLMASFPHVVER--VKRWDEEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 33455666666544222 23566678899999999999999999853
No 64
>KOG1549|consensus
Probab=99.58 E-value=3.1e-14 Score=159.25 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccc
Q psy852 437 GLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA 515 (891)
Q Consensus 437 G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~a 515 (891)
-|....+..+|.|| .+++.|++.+. +|+ +|+|+||+|++.+..--.....+ .+-.|++...+
T Consensus 78 ~y~w~~~~~~E~aR~~VAklInAd~~-dIi--Fts~ATEs~Nlvl~~v~~~~~~~--------------~~k~iitl~~e 140 (428)
T KOG1549|consen 78 SYGWKAEDAVEAAREQVAKLINADPS-DIV--FTSGATESNNLVLKGVARFFGDK--------------TKKHIITLQTE 140 (428)
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCC-cEE--EeCCchHHHHHHHHHhhcccccc--------------ccceEEEeccc
Confidence 37777888899999 88888888777 577 89999999998876533222111 11279999999
Q ss_pred hHHHHHHHH-H--cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhh-----hhcCC
Q psy852 516 HSCVEKAAM-M--AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYR-----KSQGI 579 (891)
Q Consensus 516 H~Sv~Kaa~-l--~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~-----~ldGi 579 (891)
|.|+.++++ + -|++++.||++.+|..|.+.|+++|+.++.. -..++|++..|..+ |++ |+|+.
T Consensus 141 H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~l-v~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 141 HPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRL-VSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAA 219 (428)
T ss_pred CcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceE-EEEEecccCccccccHHHHHHHhCcCCcEEEeehh
Confidence 999999996 3 4789999999999999999999999997542 22677778888876 543 45553
Q ss_pred ------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 580 ------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 580 ------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
-.+|.+++++|||++.|- +|+||+|... +.+...+.+...+.+... +.-|..- ..++.+
T Consensus 220 QavG~i~vDV~eln~D~~s~s~HK~ygp~~-iGaLYvr~~~---~~~~~~p~~~GGgq~r~~--rsGT~~~---~~~~~~ 290 (428)
T KOG1549|consen 220 QAVGKIPVDVQELNADFLSISAHKIYGPPG-IGALYVRRKR---PRLRVEPPLSGGGQERGL--RSGTVAT---PLAVGL 290 (428)
T ss_pred hhcCCccccHHHcCchheeeecccccCCCc-ceEEEEccCC---CcccccCcccCCcccccc--ccCCcCc---hhhhhh
Confidence 237999999999999555 9999999721 122223333332221110 0000000 001111
Q ss_pred HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc---eeEEEEEec---CCc-chhhhhhHHH-----
Q psy852 648 WFVIRTY--GLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR---LGLVCFRLR---SEN-NLIADQNNRK----- 712 (891)
Q Consensus 648 W~~L~~l--G~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~---~~iV~Fr~~---~~~-~~~~d~ln~~----- 712 (891)
=.+.+.. ....+..+++ ++...+..++.. .++..+.+.+. .+.++|.+. +.. ..+.+.....
T Consensus 291 gsA~e~~~~~~~~~~~~~~---~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~ 367 (428)
T KOG1549|consen 291 GSAAEFVNKEMAYDEAIIK---RLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSAC 367 (428)
T ss_pred HHHHHHHHhhcchhHHHHH---HHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchh
Confidence 1222222 2223333333 366666666643 56666655432 256666665 110 0111111111
Q ss_pred ------HHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 713 ------LLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 713 ------L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....|...|. .....+..+ |+++.+|+++|++++++.+++.+.
T Consensus 368 ~~~~~epsy~l~~~G~-----~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~ 417 (428)
T KOG1549|consen 368 TSASLEPSYVLRAIGV-----DEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVS 417 (428)
T ss_pred hcCCCCcchhhhhcCc-----chhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHH
Confidence 1111111121 112234456 999999999999999999998874
No 65
>KOG0630|consensus
Probab=99.58 E-value=3.4e-13 Score=149.59 Aligned_cols=318 Identities=16% Similarity=0.146 Sum_probs=212.0
Q ss_pred ccceEEEecccchHHHHH-HHHHcCce---EEEecC-CC---CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccchhh-
Q psy852 504 LSKLMAYCSKEAHSCVEK-AAMMAFVR---LKILEP-DD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCYR- 574 (891)
Q Consensus 504 ~~~~vI~~S~~aH~Sv~K-aa~l~gv~---v~~Vp~-d~---~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~c~~- 574 (891)
...|++|+|+.-|.-... +|+-+|+. +.+++- |. .|+||...+++.|++|.+.|+.|+++++..|++.|.+
T Consensus 229 ~aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~Gqn 308 (838)
T KOG0630|consen 229 LAAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQN 308 (838)
T ss_pred hcCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcch
Confidence 468999999999986655 45656653 333332 32 3699999999999999999999999999999998631
Q ss_pred ------------------hhcC------------------CCCccEEEEcCcccCCcccccEEEEEeCCccc-hhhhccC
Q psy852 575 ------------------KSQG------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKL-TSALVVD 617 (891)
Q Consensus 575 ------------------~ldG------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L-~~~l~~~ 617 (891)
|..| .+..||++++.--||++|-..=+++-|.-+.. ..+|..+
T Consensus 309 Dmi~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~aaSafesd 388 (838)
T KOG0630|consen 309 DMILKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSAASAFESD 388 (838)
T ss_pred HHHHHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccccchhcccC
Confidence 2222 25579999999999999987777776643211 0111111
Q ss_pred CCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--------
Q psy852 618 PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-------- 689 (891)
Q Consensus 618 ~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-------- 689 (891)
.-.+|+..+|++|.+++++|...+.++++..+.+.+-+.+.+.+++++++++..
T Consensus 389 ------------------pi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn~aelaar 450 (838)
T KOG0630|consen 389 ------------------PILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELAAR 450 (838)
T ss_pred ------------------hHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHHHH
Confidence 123788999999999999999999999999999999999999999999998621
Q ss_pred -----------------ceeEEEEEecCCc--------------------------------chhhhhhHHHHHHHHHhC
Q psy852 690 -----------------RLGLVCFRLRSEN--------------------------------NLIADQNNRKLLEDINAS 720 (891)
Q Consensus 690 -----------------~~~iV~Fr~~~~~--------------------------------~~~~d~ln~~L~~~L~~~ 720 (891)
..++|.+.+.+.. .++.|.+|.+|.+.|..+
T Consensus 451 l~dn~~sPfdvqalfdaaaPtVai~~~~~tsIk~a~q~hkaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~Llpd 530 (838)
T KOG0630|consen 451 LSDNIFSPFDVQALFDAAAPTVAIFFDGSTSIKLAGQGHKAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGLLPD 530 (838)
T ss_pred HhhccCCcchHhhhhcccCCeEEEEecCceeeeccccccHHHHhhccccchhhcchhhhcchHHHHHHHHHHHhcccccC
Confidence 1256666654431 123455555655555443
Q ss_pred Cc-EEEeeccccCCe--EE-EEec------CCCCHHHHHHHHHHHHHHHHHHHHhhhccCccc-----------ccCCCc
Q psy852 721 GR-LHMVPASQEQND--EV-FELQ------ERKRKDDLAYKRSFFVRMLGLVCFRLRSENNLI-----------ADHPLQ 779 (891)
Q Consensus 721 G~-~~~s~s~~~g~~--~l-~sv~------~~tT~edId~li~~L~ei~~~~~~~l~~~~~~~-----------~~~~~~ 779 (891)
-. +-+......|.+ .+ ||.- ....-+.+++|+..|+....+++.+++++..|+ +--+.|
T Consensus 531 ~~~f~fdtIE~~gn~GiafRfCPLEhgaae~pphidhlerFaqkLea~m~IleaTi~hKakF~eLkd~~~sL~LlPi~eW 610 (838)
T KOG0630|consen 531 CLNFDFDTIEHGGNHGIAFRFCPLEHGAAEQPPHIDHLERFAQKLEAHMDILEATIKHKAKFIELKDCFDSLRLLPIPEW 610 (838)
T ss_pred CCCCCceeeecCCccceeEEecccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEeecccc
Confidence 11 001111222222 23 6621 135678999999999999999999999999884 122359
Q ss_pred ccceEEeecccc-----hhhhhhhhHHHHHHHHhhccccCCcccHHHHHhhhcccc------cccceEEEEeccCCccc
Q psy852 780 LGLVCFRLRSEN-----NVIADQNNRKLLEDINASGRLHMVPASFELQERKRKDDL------AYKRSFFVRMVSDPKIY 847 (891)
Q Consensus 780 ~gl~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 847 (891)
.|++.|||-+.. ++.-++..++++.++| -+..++.++....+. .---|.=.+||||-|-.
T Consensus 611 AGiGaV~fiPsivkE~~~e~~nDiaKqeinhLN--------idLVeaLKStDaAFS~Gd~Tr~Gl~CVkFGMlsd~kdl 681 (838)
T KOG0630|consen 611 AGIGAVCFIPSIVKEGNEEDLNDIAKQEINHLN--------IDLVEALKSTDAAFSLGDCTRDGLICVKFGMLSDEKDL 681 (838)
T ss_pred ccccceEecccccccCCHhHhhHHHHHHHhhcc--------HHHHHHHhhhhhhcccCCccccceeEEEeccccchhhH
Confidence 999999996522 2222223334444444 223334444433332 22235556899998753
No 66
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.58 E-value=1.8e-13 Score=154.63 Aligned_cols=272 Identities=13% Similarity=0.103 Sum_probs=182.4
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMA 526 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~ 526 (891)
.+++.+...+.-+|+ +++++|+++..++...+..+. +...|+++...|++...++ ...
T Consensus 51 ~la~~lg~~~~~~v~--~~~~~t~a~~~~~~~l~~~~~----------------~g~~vl~~~~~~~s~~~~~~~~~~~~ 112 (371)
T PF00266_consen 51 ALAKLLGAPPDEEVV--FTSNGTEALNAVASSLLNPLK----------------PGDEVLVTSNEHPSNRYPWEEIAKRK 112 (371)
T ss_dssp HHHHHHTSSTTEEEE--EESSHHHHHHHHHHHHHHHGT----------------TTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCccccccc--cccccchhhhhhhhccccccc----------------cccccccccccccccccccccccccc
Confidence 566666665535777 778889888888777655421 2336899999999888554 346
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------C
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------E 580 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~ 580 (891)
|.+++.+|.+.++.+|+++++++|++++. .+ ...+....|+.. |++ .+|+. -
T Consensus 113 g~~v~~i~~~~~~~~~~~~~~~~l~~~~~--lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~ 190 (371)
T PF00266_consen 113 GAEVRVIPADPGGSLDLEDLEEALNPDTR--LVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL 190 (371)
T ss_dssp TEEEEEEEEGTTSSCSHHHHHHHHHTTES--EEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT
T ss_pred hhhhccccccccchhhhhhhhhhhccccc--eEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccc
Confidence 89999999999999999999999975432 11 111223455544 444 23432 3
Q ss_pred CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCc--cccCC--CCCccccCCccc-cccccc-chHHHHHHHHH
Q psy852 581 YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY--LQHGH--EGAIDYRHWGIP-LSRRFR-SLKLWFVIRTY 654 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Y--l~~~~--e~~~~~~~~ti~-~SRr~~-aL~lW~~L~~l 654 (891)
++|.+.+++|| +++|.|+|++++|++. +...-.....+ ..... +..+....+.++ ++.... .+.+..+++.+
T Consensus 191 ~~D~~~~s~~K-l~gp~G~g~l~v~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~ 268 (371)
T PF00266_consen 191 GADFLVFSSHK-LGGPPGLGFLYVRPEA-IERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL 268 (371)
T ss_dssp TESEEEEESTS-TTSSSTEEEEEEEHHH-HHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeecccc-cCCCCchhhheehhhh-hhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhh
Confidence 58999999999 8889999999999862 22110111111 10000 000000111111 122222 34667788888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC----CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND----VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~----~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
...|++++.++..++++++.+.|+++++++++++ ...++++|.+.+. ..+.+.+.|.++|+....+..+
T Consensus 269 ~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~~~I~~~~G~~~ 341 (371)
T PF00266_consen 269 EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKYLEERGIAVSTGSAC 341 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHHHHHHTEEEEESTTT
T ss_pred hccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHHHhhcCEEEeccCcc
Confidence 8889999999999999999999999999999773 2358999999654 4578888998888887665544
Q ss_pred c--------CCeEE-EEecCCCCHHHHHHH
Q psy852 731 E--------QNDEV-FELQERKRKDDLAYK 751 (891)
Q Consensus 731 ~--------g~~~l-~sv~~~tT~edId~l 751 (891)
. -...+ +|+++++|++|||++
T Consensus 342 ~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 342 AGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp CHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 3 23567 999999999999986
No 67
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.57 E-value=1.2e-13 Score=160.09 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=111.1
Q ss_pred CCCccccccCCCCCCHHHHHHHH------HHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q psy852 15 WQHPRFHAYFPSGNSYPSVLADM------LSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATT 88 (891)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~~~~------l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~t 88 (891)
..|+++++.-..+...|..+... ++. +|++.. +.++...+.+.+...++++++|.+... +
T Consensus 67 ~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~~~g~~~~~~e~~~~la~l~g~~~~~--------v--- 132 (447)
T PRK00451 67 EEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EISQGTLQAIFEYQTMICELTGMDVAN--------A--- 132 (447)
T ss_pred CcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--ccchHHHHHHHHHHHHHHHHhCCCcce--------E---
Confidence 34788887533333333333333 223 444333 335556777778888999999997542 1
Q ss_pred CCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHH----cCC
Q psy852 89 PNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM----AFV 164 (891)
Q Consensus 89 p~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~----~~~ 164 (891)
..++||+. ++..+.+++... ++..|+++..+|.+..+++.. .|.
T Consensus 133 ------------------~~~~g~t~--~~~~~~~a~~~~------------~g~~Vlv~~~~~~~~~~~~~~~~~~~G~ 180 (447)
T PRK00451 133 ------------------SMYDGATA--LAEAALMAVRIT------------KRKKVLVSGAVHPEYREVLKTYLKGQGI 180 (447)
T ss_pred ------------------EecCcHHH--HHHHHHHHHHhc------------CCCEEEEeCccCHHHHHHHHHHHHhCCc
Confidence 13467753 333343444311 122488899999999988743 578
Q ss_pred eEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceee
Q psy852 165 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230 (891)
Q Consensus 165 ~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHv 230 (891)
+++.|++|++ ++|+++|++.+.+++ .+|+++.. |.+|.++|+++|+++|+++|+|+++
T Consensus 181 ~~~~v~~~~~-~~d~~~l~~~i~~~t------~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 181 EVVEVPYEDG-VTDLEALEAAVDDDT------AAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIV 238 (447)
T ss_pred EEEEecCCCC-CCCHHHHHHhcCCCe------EEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEE
Confidence 9999999988 999999999986543 46677766 7799999999999999999988877
No 68
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.53 E-value=1.2e-12 Score=148.90 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=111.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCCCCCc-ccc--ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 19 RFHAYFPSGNSYPSVLADMLSDAIGCIGFS-WAA--SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~-~~~--~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
..++-...+-..|.++.+.....-..+... +.. ++...++...+.+++++++|.+.+.. .
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v--------~--------- 85 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANA--------S--------- 85 (398)
T ss_pred ccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccce--------e---------
Confidence 344544556666666666554440111111 111 45566888999999999999864321 1
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC----CeEEEEec
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF----VRLKILEP 171 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~----~~v~~V~~ 171 (891)
++.+|+.+.+..+..+ +...+ +...|+++...|.+...++...+ .+++.|++
T Consensus 86 ------------~~~~g~~~~~~~~~~~-~~~~~-----------~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~ 141 (398)
T cd00613 86 ------------LQDEATAAAEAAGLAA-IRAYH-----------KRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS 141 (398)
T ss_pred ------------ccCchHHHHHHHHHHH-Hhccc-----------CCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc
Confidence 1223333333333322 22110 12247888899999988886544 78999999
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH-HHHHHHHHHcCCceeeecccc
Q psy852 172 DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL-AEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 172 d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl-~~I~~i~~~~~~~lHvDaA~G 235 (891)
++++.+|+++|++.+.++ +.+|+++..+ .+|.++|+ ++|+++|+++|+++++|++++
T Consensus 142 ~~~~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~ 199 (398)
T cd00613 142 DEGGTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNL 199 (398)
T ss_pred CCCCCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccc
Confidence 888899999999988654 3467777776 57999985 999999999999888888874
No 69
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.52 E-value=7.7e-13 Score=153.97 Aligned_cols=272 Identities=12% Similarity=0.107 Sum_probs=172.2
Q ss_pred cccCCCCC-CHHHHHHHHHHHh---c--CCCCCcccc-ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDA---I--GCIGFSWAA-SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~---~--n~~~~~~~~-~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.-.++-+ ..|.++..+.+.+ + ++.+..+.. ......+|..+.+.++++||.+.... +||
T Consensus 37 l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~--------~~~----- 103 (452)
T PTZ00094 37 LELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEW--------GVN----- 103 (452)
T ss_pred eeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccc--------eee-----
Confidence 33334433 3455555555444 2 333334443 45567888889999999999865421 011
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHH-Hc---------C
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-MA---------F 163 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~-~~---------~ 163 (891)
...++|+..+++.+..+.+ +.-.|+++..+|.+....+. +. .
T Consensus 104 -------------~~~~sgt~an~~v~~al~~---------------~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~ 155 (452)
T PTZ00094 104 -------------VQPYSGSPANFAVYTALLQ---------------PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIY 155 (452)
T ss_pred -------------cCCCchHHHHHHHHHHhcC---------------CCCEEEecccccCCcccccccccccccccceee
Confidence 1125777555444444421 12248888999988765441 11 1
Q ss_pred CeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCC
Q psy852 164 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243 (891)
Q Consensus 164 ~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~ 243 (891)
.++..+++|.+|.+|+++|++.+++.. |-+|++ +.+++|.+.|+++|+++|+++|+++|||+|++-....
T Consensus 156 ~~~~~~~~~~~g~id~~~L~~~l~~~~-----~~lvi~--~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~--- 225 (452)
T PTZ00094 156 FESLPYQVNEKGLIDYDKLEELAKAFR-----PKLIIA--GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVA--- 225 (452)
T ss_pred eeeeecccCCCCCcCHHHHHHHHHHhC-----CCEEEE--eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhcccc---
Confidence 244566678889999999999997532 334443 3567999999999999999999999999998332210
Q ss_pred CCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccc
Q psy852 244 FRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHI 323 (891)
Q Consensus 244 ~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (891)
.
T Consensus 226 ----------~--------------------------------------------------------------------- 226 (452)
T PTZ00094 226 ----------A--------------------------------------------------------------------- 226 (452)
T ss_pred ----------C---------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEecccc--chhhcccCccccC
Q psy852 324 QSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVVDPLYLQ 401 (891)
Q Consensus 324 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~--~~~~~~~~~~y~~ 401 (891)
|+ .+ ..+..+|.+++++|||+++|.+ |++++++... +.. ..++. +.
T Consensus 227 --------------~~--------~~------~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~--~~~~~-~~ 274 (452)
T PTZ00094 227 --------------GV--------LP------SPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIEN--KINEA-VF 274 (452)
T ss_pred --------------CC--------CC------CCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHH--hhccc-cC
Confidence 00 00 0112479999999999999997 8888875421 111 00100 00
Q ss_pred CCCCCcccccccccCCCCC-hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 402 HGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 402 ~~~~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++.|+-. ...+++-.+++.+-..++.++.++..++++++.+.|.+. +++++.
T Consensus 275 -----------p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~ 328 (452)
T PTZ00094 275 -----------PGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVT 328 (452)
T ss_pred -----------CCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEec
Confidence 01223322 245677788888877889999999999999999999774 788774
No 70
>KOG0630|consensus
Probab=99.51 E-value=4.4e-12 Score=140.88 Aligned_cols=200 Identities=20% Similarity=0.311 Sum_probs=149.5
Q ss_pred cCCeEEEecCCCChHHHHH-HHHcCCeEEEEe--c--CC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 140 LSKLMAYCSKEAHSCVEKA-AMMAFVRLKILE--P--DD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 140 ~~~~~v~~S~~~H~Sv~ka-a~~~~~~v~~V~--~--d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
+..+++|+|+..|.-...- |+..|+....|. . |. +|+||...|++.|+++..+|+.|.++++..|++.+|..
T Consensus 229 ~aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~Gqn 308 (838)
T KOG0630|consen 229 LAAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQN 308 (838)
T ss_pred hcCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcch
Confidence 5678999999999877654 454443222222 2 22 46999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHcC-CceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhc
Q psy852 212 DNLAEIGPVAKEFD-VWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLK 290 (891)
Q Consensus 212 Dpl~~I~~i~~~~~-~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 290 (891)
|.|-.|.++|+++. .|+|.-|
T Consensus 309 Dmi~kildi~eahakfWLHasG---------------------------------------------------------- 330 (838)
T KOG0630|consen 309 DMILKILDICEAHAKFWLHASG---------------------------------------------------------- 330 (838)
T ss_pred HHHHHHHHHHHHhhheeEeecc----------------------------------------------------------
Confidence 99999999999985 5555544
Q ss_pred ccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCC-CcccEEEEeCC
Q psy852 291 KIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGI-EYADSFNVNVN 369 (891)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi-~~~ds~~~~~H 369 (891)
++...+.|.+-...+-.+ +..||++++.-
T Consensus 331 --------------------------------------------------haiAALt~aepnnil~HV~eqldSMal~ia 360 (838)
T KOG0630|consen 331 --------------------------------------------------HAIAALTCAEPNNILGHVEEQLDSMALNIA 360 (838)
T ss_pred --------------------------------------------------chhhheeecCcccchhHHHHHHhhccchhH
Confidence 111122222211111111 35799999999
Q ss_pred CcCCccCCceEEEEecc--ccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHH
Q psy852 370 KWLLTAFDSSCLWVADR--YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447 (891)
Q Consensus 370 K~~~~p~~~g~~~~r~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~le 447 (891)
-|++.|-..=+++-|-- +.+ ++|..+| -.+|+..+|.+|.+++++|...+.+++.+...
T Consensus 361 lWLGiPSaPiV~LHRPleg~aa-Safesdp------------------i~rekLdaLp~Wta~q~LggKaIadmienAFl 421 (838)
T KOG0630|consen 361 LWLGIPSAPIVLLHRPLEGSAA-SAFESDP------------------ILREKLDALPLWTALQALGGKAIADMIENAFL 421 (838)
T ss_pred HHhCCCCCceEEeecccccccc-hhcccCh------------------HHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence 99999988777776632 111 1222222 23567889999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccc
Q psy852 448 LAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~ 466 (891)
+++-+.+.+.+++++++++
T Consensus 422 l~kilfe~aSa~~eiemig 440 (838)
T KOG0630|consen 422 LCKILFEGASACEEIEMIG 440 (838)
T ss_pred HHHHHHHHhhcCCceeEec
Confidence 9999999999999999996
No 71
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.50 E-value=3.8e-12 Score=143.52 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHHhhhhc-CCcceEEEeecccCccccccCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
.|+++..+|+++..++...|.+++.|++|.++ .+|+++|++.+++..++ +..+.+|+++..+|.+|.++|+++|+++
T Consensus 85 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~ 164 (361)
T cd06452 85 WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKV 164 (361)
T ss_pred EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHH
Confidence 47888899999998887778899999998765 99999999999753221 2236688889999999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++|+|+||+
T Consensus 165 ~~~~~~~vivD~a~~ 179 (361)
T cd06452 165 CHEYGVPLLLNGAYT 179 (361)
T ss_pred HHHcCCeEEEECCcc
Confidence 999999999999983
No 72
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.49 E-value=1.8e-12 Score=149.43 Aligned_cols=251 Identities=12% Similarity=0.123 Sum_probs=159.7
Q ss_pred CCCCcc-hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC---CCCCCcCH
Q psy852 468 VRSSAS-ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRG 543 (891)
Q Consensus 468 itsggs-ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G~mD~ 543 (891)
.++++| .++.+|+.++|.+.. .++. |+++..+|+|+.||+.+.|++++.||+ ++++.||+
T Consensus 128 ~v~~~Tg~al~laL~alr~~~~---------------~gd~-VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~ 191 (444)
T TIGR03531 128 VVPLATGMSLSLCLSALRHKRP---------------KAKY-VIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDV 191 (444)
T ss_pred EECCHHHHHHHHHHHHcCCcCC---------------CCCE-EEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCH
Confidence 345677 788888888764210 1233 445556799999999999999999985 46689999
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hh----------------cCCC--CccEEEE
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KS----------------QGIE--YADSFNV 587 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~l----------------dGi~--~aDSIs~ 587 (891)
++|+++|++... ..+++|+++.+|+. |.+ ++ .|.+ ++|++++
T Consensus 192 e~Le~aIt~~~~--kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~ 269 (444)
T TIGR03531 192 EDIERAIEEIGP--DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVS 269 (444)
T ss_pred HHHHHHHHhccC--CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEE
Confidence 999999985321 23555555554431 332 11 2332 5899999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~ 667 (891)
|+|||+.+|.++|++++++++.+.. +.. .|... .....++.+|++++.+|.+++++++++..
T Consensus 270 s~hK~l~~pg~Gg~I~~~d~el~~~-i~~--~y~g~---------------~~~s~~~~~~~~ll~~G~~g~~~li~~~~ 331 (444)
T TIGR03531 270 STDKNFMVPVGGAIIYSFDENFIQE-ISK--SYPGR---------------ASASPSLDVLITLLSLGSKGYLELLKERK 331 (444)
T ss_pred eCccCCCCCCCEEEEEECCHHHHHH-HHH--hccCC---------------CCChHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999988866543 221 12110 01134688999999999999999999999
Q ss_pred HHHHHHHHHhccCC---CcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHhC---CcEEEeecc--ccCC-e---
Q psy852 668 ELAKLFEGKVRRDP---RFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINAS---GRLHMVPAS--QEQN-D--- 734 (891)
Q Consensus 668 ~lA~~L~~~L~~~~---~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~---G~~~~s~s~--~~g~-~--- 734 (891)
++++++.+.|+++. +-+++..|... -+++.+.... +.....+...|-.+ |--++.+.. .-++ +
T Consensus 332 ~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~----~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~ 407 (444)
T TIGR03531 332 EMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK----GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKG 407 (444)
T ss_pred HHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc----ccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeec
Confidence 99999999998752 34555433221 1222222110 22344555556443 322222221 0011 0
Q ss_pred -----------EE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 735 -----------EV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 735 -----------~l-~sv~~~tT~edId~li~~L~ei 758 (891)
++ +...-.++++|||.+++.|++.
T Consensus 408 ~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 408 YGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred ccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 11 2222358999999999888763
No 73
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.46 E-value=4.9e-12 Score=154.49 Aligned_cols=282 Identities=14% Similarity=0.074 Sum_probs=177.8
Q ss_pred CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCC
Q psy852 460 PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN 539 (891)
Q Consensus 460 ~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G 539 (891)
-|.+...-...+|+.+++.++.+.|.....+.. ..+-+|++|..+|.+.--.+.+.|++++.||+|++|
T Consensus 556 tGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge-----------~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G 624 (954)
T PRK12566 556 TGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQ-----------SQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDG 624 (954)
T ss_pred HCCCeEeecCCchHHHHHHHHHHHHHHHHhcCC-----------CCCCEEEecccccccCHHHHHHCCCEEEEeccCCCC
Confidence 344555323346678888899998875543211 235579999999977766677889999999999999
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEE-E-ecCCccc---------hhh-----hhcC-------------CCCccEEEEcCc
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFV-S-TTLGTTS---------CYR-----KSQG-------------IEYADSFNVNVN 590 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~V-v-ataGTT~---------c~~-----~ldG-------------i~~aDSIs~d~H 590 (891)
.+|+++|+++|++... ...-+++ . ++.|... |++ ++|| --+||.+.+++|
T Consensus 625 ~iDle~L~a~I~~~~~-~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~H 703 (954)
T PRK12566 625 NVDLDDLKAKAAAAGD-RLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLH 703 (954)
T ss_pred CcCHHHHHHHhhccCC-CEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCC
Confidence 9999999999984221 1111111 1 2334322 222 2333 245899999999
Q ss_pred ccCCcccccEEEEEeC---CccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHhhHHHHHHHH
Q psy852 591 KWLLTAFDSSCLWVAD---RYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRH 666 (891)
Q Consensus 591 K~L~~P~g~G~llvR~---~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~ 666 (891)
||+++|.|.|..+++. ++.|.+.+...+. ... +......+.....+.-. .-++..|..++.+|.+ +.+.-..+
T Consensus 704 Ktf~~P~G~GGP~vG~iav~~~L~pfLp~~P~-~d~-~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~a 780 (954)
T PRK12566 704 KTFCIPHGGGGPGMGPIGVRAHLAPFVANHPV-VPV-EGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVA 780 (954)
T ss_pred cccCcCccCCCCccchhhhhhhhhhhccCCCC-cCC-CCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHH
Confidence 9999999999998886 3333332221111 000 00000101111111111 1146789999999999 88888889
Q ss_pred HHHHHHHHHHhccCCCcEEe-CC---C---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EE
Q psy852 667 CELAKLFEGKVRRDPRFEIS-ND---V---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FE 738 (891)
Q Consensus 667 ~~lA~~L~~~L~~~~~~eil-~~---~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~s 738 (891)
+.+|+|+.++|.+. +++. .+ + ++.+.++.+++. .......+.++|.+.|+...+- .......+ ++
T Consensus 781 ilnAnYla~rL~~~--~~v~~~~~~~~~~hEfii~~~~l~~~----~g~~~~dvakRL~d~Gihapt~-~fPv~~~LmIe 853 (954)
T PRK12566 781 ILSANYLANQLGGA--FPVLYRGRNERVAHECILDLRPLKAQ----TGISEEDVAKRLMDYGFHAPTM-SFPVPGTLMVE 853 (954)
T ss_pred HHHHHHHHHHhHhh--CCCCcCCCCCCeeeEEEEEccccccc----cCCCHHHHHHHHHHCCcEEeEE-eeccCCEEEEE
Confidence 99999999999873 4443 22 1 223333334321 0123366888888888764332 23345566 99
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~~~~~ 763 (891)
++.+.+++|||+++++++++.....
T Consensus 854 pTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 854 PTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred eeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886443
No 74
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.44 E-value=5.8e-12 Score=141.90 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+....+-..+.+.+++++|.++... .+ .+++|||...+..+..+.+
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~~-------~i--------------------~~t~~~t~al~~~~~~l~~------- 76 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGYT-------SV--------------------LLQGSGTFAVEAVIGSAVP------- 76 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCce-------EE--------------------EEcCCCHHHHHHHHHhcCC-------
Confidence 5566677778999999999975310 00 1356776443333333211
Q ss_pred ccccccccCCeEEEecCCCChHH-HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSCV-EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~Sv-~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
.++-+++++...|.+. .+.+...+.+++.|+++.++.+|+++|++.+.+..+ +.+|+++...|.+|.+
T Consensus 77 -------~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~ 145 (363)
T TIGR02326 77 -------KDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPA----ITHIALVHCETTTGIL 145 (363)
T ss_pred -------CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCC----ccEEEEEeecCCcccc
Confidence 0223456666666663 455566678999999999999999999999876421 2367888889999999
Q ss_pred cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcc
Q psy852 212 DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKK 291 (891)
Q Consensus 212 Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (891)
.|+++|+++|+++|++++||++++- ..
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~-g~---------------------------------------------------- 172 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSF-GG---------------------------------------------------- 172 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEccccc-cC----------------------------------------------------
Confidence 9999999999999999999987720 00
Q ss_pred cCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCc
Q psy852 292 IHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKW 371 (891)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~ 371 (891)
..+ . ++.+ .+|.+..++|||
T Consensus 173 -----------------------------------------~~~--------------~----~~~~-~~D~~~~s~~K~ 192 (363)
T TIGR02326 173 -----------------------------------------IPI--------------D----IAEL-HIDYLISSANKC 192 (363)
T ss_pred -----------------------------------------ccc--------------c----hhhc-CccEEEecCccc
Confidence 000 0 0001 368999999999
Q ss_pred CCccCCceEEEEeccccchhhcc-cCccccCCCC---CCcccccccccCCCCC-hhHHHHHHHHHHhcHH-HHHHHHHHH
Q psy852 372 LLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGH---EGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIRRH 445 (891)
Q Consensus 372 ~~~p~~~g~~~~r~~~~~~~~~~-~~~~y~~~~~---~~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~-G~~~ii~~~ 445 (891)
+++|.+.|+++++++. +..... ..+.|+.... ......+.+.+ +.+ ...+++..+++.+-.+ |+.++.++.
T Consensus 193 l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--t~~~~~~~al~~al~~l~~~g~~~~~~~~~ 269 (363)
T TIGR02326 193 IQGVPGFGFVIARQAE-LAACKGNARSLSLDLYDQWRCMEDNHGKWRF--TSPTHVVHAFAQALLELEKEGGVAARHQRY 269 (363)
T ss_pred cccCCcceEEEECHHH-HHHhhcCCCceeecHHHHHHHHhccCCCCCC--CCcHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999998652 111110 1111110000 00000000111 112 2345677788887666 588899999
Q ss_pred HHHHHHHHHhhccCCcccccc
Q psy852 446 CELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++++++.+.|.+. +++++.
T Consensus 270 ~~~~~~l~~~L~~~-g~~~~~ 289 (363)
T TIGR02326 270 QQNQKTLVAGMRAL-GFEPLL 289 (363)
T ss_pred HHHHHHHHHHHHHc-CCeecc
Confidence 99999999999775 667664
No 75
>PRK14012 cysteine desulfurase; Provisional
Probab=99.44 E-value=1.9e-11 Score=139.99 Aligned_cols=265 Identities=15% Similarity=0.158 Sum_probs=162.5
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH---cC
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AF 527 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l---~g 527 (891)
.+++.+...+. +++ +++|+|+++..++.+......+ +...|+++..+|+++..++.. .|
T Consensus 57 ~ia~~~g~~~~-~v~--~~~g~t~al~~~l~~l~~~~~~---------------~gd~Vi~~~~~~~s~~~~~~~~~~~g 118 (404)
T PRK14012 57 QIADLIGADPR-EIV--FTSGATESDNLAIKGAAHFYQK---------------KGKHIITSKTEHKAVLDTCRQLEREG 118 (404)
T ss_pred HHHHHcCcCcC-eEE--EeCCHHHHHHHHHHHHHHhhcC---------------CCCEEEEecCccHHHHHHHHHHHhCC
Confidence 56666655443 455 6789999999988776432211 123588899999999877643 48
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC------------
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI------------ 579 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi------------ 579 (891)
++++.|++|++|.+|+++|+++|++++. .+++. +..|... |++ ++|+.
T Consensus 119 ~~~~~v~~~~~g~~d~~~l~~~i~~~t~----lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~ 194 (404)
T PRK14012 119 FEVTYLDPQSNGIIDLEKLEAAMRDDTI----LVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSK 194 (404)
T ss_pred CEEEEEccCCCCcCCHHHHHHhcCCCCE----EEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCccc
Confidence 8999999999999999999999976432 12222 2235544 433 12321
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-cccccc-chHHHHHHHHHHHh
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRFR-SLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr~~-aL~lW~~L~~lG~~ 657 (891)
..+|.+++++||+ ++|.|+|+++++++.... ..+.+...+.+. .+. ++.... .+.+-.++..+ ..
T Consensus 195 ~~~D~~~~s~~K~-~gp~g~G~l~~~~~~~~~----~~~~~~g~~~~~-------~~~~gt~~~~~~~~l~~al~~~-~~ 261 (404)
T PRK14012 195 LKVDLMSFSAHKI-YGPKGIGALYVRRKPRVR----LEAQMHGGGHER-------GMRSGTLPTHQIVGMGEAARIA-KE 261 (404)
T ss_pred CCCCEEEEehhhc-cCCCceEEEEEecCCCCC----CCceecCCCccC-------CccCCCcCHHHHHHHHHHHHHH-Hh
Confidence 2489999999994 568899999999764221 111111100000 000 011110 11111233222 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc--
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-- 730 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-- 730 (891)
++.+..++..++++++.+.|++++++.+..+. ....++|.+.+. ..+...|. ++...++..+
T Consensus 262 ~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~--~~~i~~g~~~~~ 330 (404)
T PRK14012 262 EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMALK--DLAVSSGSACTS 330 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhCC--CeEEEchhhhCC
Confidence 56777888899999999999999988876432 122456665321 24455553 3322222111
Q ss_pred -----------------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 731 -----------------EQNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 731 -----------------~g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
.....+ +++++++|++|||+++++|++++..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~ 379 (404)
T PRK14012 331 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGK 379 (404)
T ss_pred CCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 112466 9999999999999999999998753
No 76
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.44 E-value=1.9e-11 Score=139.08 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 648 WFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 648 W~~L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
-.+|+.+-.. |++++.++..++++++.+.|++.++++++.+ + .. .+++|++++.+ ......+...|.++|+
T Consensus 258 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~----~~~~~~~~~~l~~~~i 333 (378)
T PRK03080 258 LDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ----AAVDAAAVAKLLRENG 333 (378)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch----HHHHHHHHHHHHHcCC
Confidence 4577777777 8999999999999999999999988887642 2 23 58999986410 0234456667766776
Q ss_pred EEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+...+........+ +|++.++|++|||+++++|+++..
T Consensus 334 ~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 334 AVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred eeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 64443222223456 999999999999999999998763
No 77
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.43 E-value=4.6e-12 Score=145.24 Aligned_cols=254 Identities=13% Similarity=0.056 Sum_probs=166.7
Q ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcccc
Q psy852 51 ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKI 130 (891)
Q Consensus 51 ~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~ 130 (891)
.++.+.++-.++.+++++++|.+.... + .++++|+...+.....+. +
T Consensus 36 ~~~~~~~~~~~~~~~l~~~~g~~~~~~--------v--------------------i~~~~gt~a~~~a~~~~~--~--- 82 (401)
T PLN02409 36 RSPAFPALTKELLEDVKYIFKTKSGTP--------F--------------------IFPTTGTGAWESALTNTL--S--- 82 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCE--------E--------------------EEeCCcHHHHHHHHHhcC--C---
Confidence 377888899999999999999864311 0 123455432211111111 1
Q ss_pred CCccccccccCCeEEEecCCCChHHH--HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc
Q psy852 131 HPFVDEGVLLSKLMAYCSKEAHSCVE--KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC 208 (891)
Q Consensus 131 ~~~~~~g~~~~~~~v~~S~~~H~Sv~--kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~ 208 (891)
+.-.|+++...|++.. ..+...|.+++.|+.+.++.+|+++|++.++++.. ..+.+|++++.+|.|
T Consensus 83 ----------~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~--~~~k~v~~~~~~~~t 150 (401)
T PLN02409 83 ----------PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTN--HKIKAVCVVHNETST 150 (401)
T ss_pred ----------CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcC--CCccEEEEEeecccc
Confidence 1223677778898763 44455678999999987777999999999986320 124588889999999
Q ss_pred ccccCHHHHHHH--HHHcCCceeeecccc-CCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHH
Q psy852 209 CSFDNLAEIGPV--AKEFDVWLHVDGAYA-GSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQA 285 (891)
Q Consensus 209 GavDpl~~I~~i--~~~~~~~lHvDaA~G-G~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (891)
|.+.|+++|.++ |+++|++++||++++ |...
T Consensus 151 G~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~---------------------------------------------- 184 (401)
T PLN02409 151 GVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALD---------------------------------------------- 184 (401)
T ss_pred cccCCHHHHHHHHhhhccCcEEEEEcccccCCcc----------------------------------------------
Confidence 999999999999 999998888888872 0000
Q ss_pred HhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEE
Q psy852 286 ISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFN 365 (891)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~ 365 (891)
+. ++.+ .+|.+.
T Consensus 185 -------------------------------------------------id------------------~~~~-~~D~~~ 196 (401)
T PLN02409 185 -------------------------------------------------FR------------------MDEW-GVDVAL 196 (401)
T ss_pred -------------------------------------------------cc------------------cccc-CccEEE
Confidence 00 0000 369999
Q ss_pred EeCCCcCCccCCceEEEEeccccchhhcc--cCccccCCCCCCccccccc-cc-CCCCCh-hHHHHHHHHHHhcHHHHHH
Q psy852 366 VNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGHEGAIDYRHW-GI-PLSRRF-RSLKLWFVIRTYGLSGLQK 440 (891)
Q Consensus 366 ~~~HK~~~~p~~~g~~~~r~~~~~~~~~~--~~~~y~~~~~~~~~~~~~~-~~-~~sr~~-~~l~~w~~l~~~g~~G~~~ 440 (891)
.++|||+++|.+.|+++++++. +..... ..+.|..... ..++... +. .++-+. ..+++-.+++.+-..|+++
T Consensus 197 ~s~~K~l~~P~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~ 273 (401)
T PLN02409 197 TGSQKALSLPTGLGIVCASPKA-LEASKTAKSPRVFFDWAD--YLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLEN 273 (401)
T ss_pred EcCccccCcCCCcceeEECHHH-HHHHhcCCCCCeecCHHH--HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999987652 211111 1222221000 0000000 00 112122 2346677788888889999
Q ss_pred HHHHHHHHHHHHHHhhccCCccccccC
Q psy852 441 YIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
+.++..++++++.+.|.+. +++++.+
T Consensus 274 i~~~~~~l~~~l~~~L~~~-g~~~~~~ 299 (401)
T PLN02409 274 VIARHARLGEATRLAVEAW-GLKLCTK 299 (401)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 9999999999999999875 7888753
No 78
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.41 E-value=1.6e-11 Score=139.85 Aligned_cols=235 Identities=13% Similarity=0.052 Sum_probs=151.0
Q ss_pred EEEecccchHHHHHHHHHcC----ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc------------
Q psy852 508 MAYCSKEAHSCVEKAAMMAF----VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS------------ 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~g----v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~------------ 571 (891)
.|+++...|.+...++.+.+ .+++.+|.++++.+|+++|++++.+++ .++++...+++.
T Consensus 110 ~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t-----~~viv~~~~~~G~~~~~l~~i~~l 184 (398)
T cd00613 110 KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV-----AALMVQYPNTLGVFEDLIKEIADI 184 (398)
T ss_pred EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe-----EEEEEECCCCCceecchHHHHHHH
Confidence 58889999999988887665 899999998888999999999986532 222222222222
Q ss_pred hhhh-----hcC------------CCCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCcccc-CCC-C
Q psy852 572 CYRK-----SQG------------IEYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQH-GHE-G 627 (891)
Q Consensus 572 c~~~-----ldG------------i~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~-~~e-~ 627 (891)
|+++ +|+ ...+|+++.++|||+ .|+| +|++++++. .+ +.+.....+... ... .
T Consensus 185 a~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ 261 (398)
T cd00613 185 AHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LV-RFLPGRLVGVTKDAEGNR 261 (398)
T ss_pred HHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hH-hhCCCCeeccccccCCCc
Confidence 4332 333 124799999999999 8864 557776653 22 222111001000 000 0
Q ss_pred Cc--cc-----------cCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEE
Q psy852 628 AI--DY-----------RHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLV 694 (891)
Q Consensus 628 ~~--~~-----------~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV 694 (891)
.+ ++ +...+...-...+...|..++.++.+|++++.++..+++++|.++|++++.......+..++|
T Consensus 262 ~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v 341 (398)
T cd00613 262 AFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEF 341 (398)
T ss_pred ceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEE
Confidence 00 00 000001111233457788888899999999999999999999999998866553334456778
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 695 CFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 695 ~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
+|++.+.. +....++.+.|.++|+.... ....+...+ ++++.++|++|||+++++|
T Consensus 342 ~~~~~~~~----~~~~~~~~~~L~~~gi~~~~-~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 342 VLRLPPLY----GIRAEDLAKALIDGGFHAPT-MYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred EEEcCCcc----hHHHHHHHHhhhhcCccccc-cccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 88875310 12456788888888876322 112344567 9999999999999998764
No 79
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.39 E-value=1.5e-11 Score=134.88 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=174.2
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--- 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~--- 524 (891)
+.+++++.+.. ..++ +..+||.+|.++|.+.-. +.-.++|...+|........
T Consensus 40 ~e~~~ae~~g~---~a~~--Fv~sGT~aN~lal~~~~~-------------------~~~~vi~~~~aHi~~~E~Ga~~~ 95 (342)
T COG2008 40 LEQRIAELFGK---EAAL--FVPSGTQANQLALAAHCQ-------------------PGESVICHETAHIYTDECGAPEF 95 (342)
T ss_pred HHHHHHHHhCC---ceEE--EecCccHHHHHHHHHhcC-------------------CCCeEEEeccccceecccCcHHH
Confidence 34456666654 2445 778899999999887431 12249999999999888653
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhh-hcCCccEEEEec----CCccc-----------hhh-----hhcCC----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDE-TMGYIPFFVSTT----LGTTS-----------CYR-----KSQGI---- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~-~~g~ip~~Vvat----aGTT~-----------c~~-----~ldGi---- 579 (891)
+.++..+.+...++|.|++++++..|..+. ..-..|+++.-+ .||.. |++ |+||.
T Consensus 96 ~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~n 175 (342)
T COG2008 96 FGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLAN 175 (342)
T ss_pred HcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHH
Confidence 345565666666899999999999988632 333446665432 24433 554 68872
Q ss_pred -------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchH
Q psy852 580 -------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLK 646 (891)
Q Consensus 580 -------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~ 646 (891)
.++||++|++-|.++.|. |++++-+.+..+++ .|.+.- .-++-|..+-|.
T Consensus 176 A~valg~~~~~~~~~~D~v~~~~tK~g~~~~--gAiv~gn~~~~~~a-----~~~rK~----------~Ggl~~k~r~la 238 (342)
T COG2008 176 ALVALGVALKTIKSYVDSVSFCLTKGGGAPV--GAIVFGNRDFAKRA-----RRWRKR----------AGGLMRKARFLA 238 (342)
T ss_pred HHHHcCCCHHHHHhhCCEEEEecccCCccee--eeEEEcCHHHHHHH-----HHHHHH----------hcccHhhhhHHH
Confidence 678999999999999998 77888887655432 111100 001223333222
Q ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 647 -LWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 647 -lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
+|.. ++..+-+....+|..++|++|++.|.+.+++++..+++.|+|-.+++.. ..+.|...|..+-
T Consensus 239 A~~~~--~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~-----------~i~~l~~~~~~~~ 305 (342)
T COG2008 239 AQGLY--ALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES-----------AIEALRLAGALFY 305 (342)
T ss_pred HHHHH--HHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChH-----------HHHHHHhhchhhe
Confidence 2222 3344446667778888899999999999999999999999998888532 2256666665544
Q ss_pred eeccccCC-eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQN-DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~g~-~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.-.... +.+ |++++.||++|||+++..++++.
T Consensus 306 ~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 306 RGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred eeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 33222222 456 99999999999999999998764
No 80
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.39 E-value=2.2e-11 Score=141.90 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=166.0
Q ss_pred HHHHhhccCCcccc-ccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH-H---
Q psy852 451 LFEGKVRRDPRFEI-SNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM-M--- 525 (891)
Q Consensus 451 ~l~~~L~~~~~~eV-v~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~-l--- 525 (891)
.+++.+...+. ++ .+-..++|+++|+.++.+.- + +.-.|+++...|.+....+. +
T Consensus 88 ~~a~lf~a~~~-~~~~~~~~~sgt~an~~v~~al~----~---------------~gd~Ii~~~~ehg~~l~~~~~l~~~ 147 (452)
T PTZ00094 88 RALEAFGLDPE-EWGVNVQPYSGSPANFAVYTALL----Q---------------PHDRIMGLDLPSGGHLTHGFYTAKK 147 (452)
T ss_pred HHHHHhCCCcc-cceeecCCCchHHHHHHHHHHhc----C---------------CCCEEEecccccCCccccccccccc
Confidence 44444554333 22 22223788999999877641 0 12358888888877654432 1
Q ss_pred ------cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhh-----hhcC--------
Q psy852 526 ------AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYR-----KSQG-------- 578 (891)
Q Consensus 526 ------~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~-----~ldG-------- 578 (891)
.++++..+++|.+|.+|+++|++++++.. ....++.....|... |++ ++|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~--~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~ 225 (452)
T PTZ00094 148 KVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR--PKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVA 225 (452)
T ss_pred ccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC--CCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhcccc
Confidence 12345567788889999999999997532 112222223344433 433 1222
Q ss_pred -------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHH
Q psy852 579 -------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 579 -------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~ 650 (891)
+.++|.+++++|||+++|.| |++++++.. .. .+.. .+... ..+ ++.++-. ...+.+..+
T Consensus 226 ~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~-~~-~l~~---~~~~~--~~p-----~~~G~~~~~~iaal~~a 292 (452)
T PTZ00094 226 AGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKV-KP-DIEN---KINEA--VFP-----GLQGGPHNHQIAAIAVQ 292 (452)
T ss_pred CCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEeccc-ch-HHHH---hhccc--cCC-----CCCCCchHHHHHHHHHH
Confidence 23589999999999999998 888887642 11 1110 00000 000 0111111 234556677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC---CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND---VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~---~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
++.+...+++++.++..+++++|.+.|++. +++++.+ ....+|.|...+. ..+.+...|.+.|++....
T Consensus 293 l~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI~vs~~ 364 (452)
T PTZ00094 293 LKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGI-------TGSKMEKLLDAVNISVNKN 364 (452)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCC-------CHHHHHHHHHHCCcEEecc
Confidence 777767788888899999999999999885 8888742 2345666665433 4567888888889885322
Q ss_pred cccc-----CCeEE-EEecCCCC----HHHHHHHHHHHHHHHHH
Q psy852 728 ASQE-----QNDEV-FELQERKR----KDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 728 s~~~-----g~~~l-~sv~~~tT----~edId~li~~L~ei~~~ 761 (891)
.... ....+ ++++.+|| ++||+++++.|.+++..
T Consensus 365 ~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 365 TIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred cCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1111 12456 99888776 99999999999998864
No 81
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.38 E-value=2.4e-11 Score=148.58 Aligned_cols=198 Identities=18% Similarity=0.122 Sum_probs=142.8
Q ss_pred CeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
+-+|++|..+|.+..-++...|.+++.|++|++|.+|+++|++.+++.. ....+|++|..++..+..+||++|++++
T Consensus 591 r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~ia 667 (954)
T PRK12566 591 RDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICEVV 667 (954)
T ss_pred CCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHHHH
Confidence 4568899999988877777788999999999999999999999997422 1257899999999888889999999999
Q ss_pred HHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhH
Q psy852 222 KEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVL 301 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (891)
+++|..+++|||.. +++.
T Consensus 668 h~~Galv~vDgA~~------------------------~a~~-------------------------------------- 685 (954)
T PRK12566 668 HQHGGQVYMDGANL------------------------NAQV-------------------------------------- 685 (954)
T ss_pred HHcCCEEEEEeeCh------------------------hhcc--------------------------------------
Confidence 99999999999981 0000
Q ss_pred HHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEE
Q psy852 302 LSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCL 381 (891)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~ 381 (891)
.+..| +-..||.+.+++|||+++|-+.|..
T Consensus 686 -------------------------------------------~l~~P-------g~~GADi~~~s~HKtf~~P~G~GGP 715 (954)
T PRK12566 686 -------------------------------------------GLARP-------ADIGADVSHMNLHKTFCIPHGGGGP 715 (954)
T ss_pred -------------------------------------------CCCCh-------hhcCCCEEEecCCcccCcCccCCCC
Confidence 00000 1125799999999999999999988
Q ss_pred EEec---cccchhhcccCccccCCCCCCcccccccccCCCCC----hh---HHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy852 382 WVAD---RYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR----FR---SLKLWFVIRTYGLSGLQKYIRRHCELAKL 451 (891)
Q Consensus 382 ~~r~---~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~----~~---~l~~w~~l~~~g~~G~~~ii~~~lelAr~ 451 (891)
.+.- +..+...+...|. .. .++. ..+ ++.+. .. ++..|..++.+|.+ +.+....++.+|+|
T Consensus 716 ~vG~iav~~~L~pfLp~~P~-~d--~~G~-~~r----~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnY 786 (954)
T PRK12566 716 GMGPIGVRAHLAPFVANHPV-VP--VEGP-DPN----NGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANY 786 (954)
T ss_pred ccchhhhhhhhhhhccCCCC-cC--CCCC-CCC----CCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHH
Confidence 8765 2222222221221 00 0110 001 12221 12 56889999999999 99999999999999
Q ss_pred HHHhhccCCccccc
Q psy852 452 FEGKVRRDPRFEIS 465 (891)
Q Consensus 452 l~~~L~~~~~~eVv 465 (891)
++++|.+ ++++.
T Consensus 787 la~rL~~--~~~v~ 798 (954)
T PRK12566 787 LANQLGG--AFPVL 798 (954)
T ss_pred HHHHhHh--hCCCC
Confidence 9999976 44444
No 82
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.37 E-value=6.1e-11 Score=137.68 Aligned_cols=236 Identities=12% Similarity=0.072 Sum_probs=151.6
Q ss_pred EEEecccchHHHHHHHHH----cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hh
Q psy852 508 MAYCSKEAHSCVEKAAMM----AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CY 573 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l----~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~ 573 (891)
.|+++..+|.+..+++.. .|++++.+|++++ ++|+++|+++|+++++ .+++. +..|+.. |+
T Consensus 156 ~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~----~v~l~~pn~tG~v~~l~~I~~~a~ 230 (447)
T PRK00451 156 KVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTA----AVVVQYPNFFGVIEDLEEIAEIAH 230 (447)
T ss_pred EEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeE----EEEEECCCCCCeeCCHHHHHHHHH
Confidence 588899999999998763 5889999999988 9999999999976432 22222 2234433 43
Q ss_pred hh-----h--c----------CCCCccEEEEcCccc-----CCcccccEEEEEeCCccchhhhccC-----------CCc
Q psy852 574 RK-----S--Q----------GIEYADSFNVNVNKW-----LLTAFDSSCLWVADRYKLTSALVVD-----------PLY 620 (891)
Q Consensus 574 ~~-----l--d----------Gi~~aDSIs~d~HK~-----L~~P~g~G~llvR~~~~L~~~l~~~-----------~~Y 620 (891)
++ + | +--.+|.+..++||| +++| ++|+++++++. + +.+... ..|
T Consensus 231 ~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~-~-~~~~~~~~g~~~~~~~~~~~ 307 (447)
T PRK00451 231 AGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKL-V-RQMPGRLVGETVDADGKRGF 307 (447)
T ss_pred HCCCEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHH-H-hhCCCCEeeeecccCCCeee
Confidence 32 1 2 234579999999998 5566 79999887642 2 211100 001
Q ss_pred cccC-C-CCCccccC-Cccccccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE
Q psy852 621 LQHG-H-EGAIDYRH-WGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF 696 (891)
Q Consensus 621 l~~~-~-e~~~~~~~-~ti~~SRr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F 696 (891)
.... . ........ ....+++. ..++..+..++.++.+|++++.++..++++++.++|+++++++++..+....+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v 387 (447)
T PRK00451 308 VLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVV 387 (447)
T ss_pred EeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEE
Confidence 0000 0 00000000 00011111 2235666677788999999999999999999999999999999874444455666
Q ss_pred EecCCcchhhhhhHHHHHHHHHhCCcEEEe--eccc-cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 697 RLRSENNLIADQNNRKLLEDINASGRLHMV--PASQ-EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 697 r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s--~s~~-~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++. . ...++.++|.++|+.... .... .....+ ++++.++|++|||+++++|+++.
T Consensus 388 ~~~-~-------~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 388 RLP-K-------PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ecC-C-------CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 652 1 246788889888765211 1111 112356 99999999999999999998753
No 83
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.36 E-value=1.8e-10 Score=129.91 Aligned_cols=278 Identities=11% Similarity=0.012 Sum_probs=174.6
Q ss_pred HHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHHHcCc
Q psy852 451 LFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAMMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~l~gv 528 (891)
.+++.++..++ -+|+ +++|+|+++..++...-. .++-+++.+...|.+ +.+.+...|+
T Consensus 43 ~la~l~~~~~~~~~i~--~t~~~t~al~~~~~~l~~------------------~~~~vlv~~~~~~~~~~~~~a~~~g~ 102 (363)
T TIGR02326 43 QLLALATAEEGYTSVL--LQGSGTFAVEAVIGSAVP------------------KDGKLLVVINGAYGARIVQIAEYLGI 102 (363)
T ss_pred HHHHHhCCCCCceEEE--EcCCCHHHHHHHHHhcCC------------------CCCeEEEEeCChhhHHHHHHHHHcCC
Confidence 55555665443 2466 788999998877655311 123356666666666 3566777889
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhhh-----hcCC------------CC
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYRK-----SQGI------------EY 581 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~~-----ldGi------------~~ 581 (891)
+++.||++.++.+|+++|+++|+++.... ...++. +..|+.. |+++ +|++ -.
T Consensus 103 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~~-~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~ 181 (363)
T TIGR02326 103 PHHVVDTGEVEPPDVVEVEAILAADPAIT-HIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELH 181 (363)
T ss_pred ceEEEeCCCCCCCCHHHHHHHHhhCCCcc-EEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcC
Confidence 99999999999999999999998643211 122222 2345544 4331 2321 14
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccccc-----ccchHHHHHHHHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR-----FRSLKLWFVIRTYG 655 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr-----~~aL~lW~~L~~lG 655 (891)
+|.+..++|||+++|.|+|+++++++. +...... ...|+... ..+..... ..+.++ ...+.+..+++.+.
T Consensus 182 ~D~~~~s~~K~l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~ft~~~~~~~al~~al~~l~ 257 (363)
T TIGR02326 182 IDYLISSANKCIQGVPGFGFVIARQAE-LAACKGNARSLSLDLY--DQWRCMED-NHGKWRFTSPTHVVHAFAQALLELE 257 (363)
T ss_pred ccEEEecCccccccCCcceEEEECHHH-HHHhhcCCCceeecHH--HHHHHHhc-cCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 799999999999999999999998762 2211100 00010000 00000000 001111 22345666777776
Q ss_pred Hh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc
Q psy852 656 LS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE 731 (891)
Q Consensus 656 ~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~ 731 (891)
.+ +++++.++..++++++.+.|++. +++++.++ ..+ +++|++.+.. +.....+.+.|.++|+.+..+...
T Consensus 258 ~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~L~~~gi~v~~g~~~- 331 (363)
T TIGR02326 258 KEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDP----DYRFADFYQRLKEQGFVIYPGKVS- 331 (363)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCC----CCCHHHHHHHHHHCCEEEECCcCC-
Confidence 65 58888899999999999999886 77776543 344 4678875320 113457888898899886544332
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
....+ ++++.+++.+|+++++++|++++
T Consensus 332 ~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 332 QVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 33456 98877889999999999998765
No 84
>PRK07179 hypothetical protein; Provisional
Probab=99.34 E-value=6.7e-10 Score=127.46 Aligned_cols=159 Identities=15% Similarity=0.096 Sum_probs=105.6
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHh--cCCC--CCcccc--ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q psy852 13 THWQHPRFHAYFPSGNSYPSVLADMLSDA--IGCI--GFSWAA--SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNA 86 (891)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~--~n~~--~~~~~~--~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~ 86 (891)
.++.+-+|++... -|.+...+...+ ++.+ +..... .+...++|+ .|++++|.+..
T Consensus 57 ~~~~~~~YL~l~~----~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~~----------- 117 (407)
T PRK07179 57 IILQSNDYLNLSG----HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFESC----------- 117 (407)
T ss_pred EEeecCCccCCCC----CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH----HHHHHhCCCcE-----------
Confidence 4566777888763 344444444332 1212 122222 245667774 77777887532
Q ss_pred CCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE
Q psy852 87 TTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 166 (891)
Q Consensus 87 ~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v 166 (891)
.++++|+.++...+..+++. .-.|+++..+|+|+...+...+.++
T Consensus 118 --------------------~~~~sG~~An~~~l~~l~~~---------------g~~v~~~~~~h~s~~~~~~~~g~~~ 162 (407)
T PRK07179 118 --------------------LLCQSGWAANVGLLQTIADP---------------NTPVYIDFFAHMSLWEGVRAAGAQA 162 (407)
T ss_pred --------------------EEECCHHHHHHHHHHHhCCC---------------CCEEEEECCcCHHHHHHHHHCCCeE
Confidence 13568876554433333211 1237788999999988877666665
Q ss_pred EEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 167 ~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
..++ ..|+++|++.+++.. +.+|++...++.+|.+.|+++|+++|+++|+++|+|.|++
T Consensus 163 ~~~~-----~~d~~~l~~~l~~~~-----~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~ 221 (407)
T PRK07179 163 HPFR-----HNDVDHLRRQIERHG-----PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHS 221 (407)
T ss_pred EEec-----CCCHHHHHHHHHhcC-----CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECccc
Confidence 4432 369999999986531 4577788899999999999999999999999999999994
No 85
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.33 E-value=3.8e-10 Score=128.80 Aligned_cols=273 Identities=13% Similarity=0.050 Sum_probs=165.7
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+.. +. ++ +++|++++|..++.+.- + +.-.|+++..+|+++..++.+.|+++
T Consensus 71 ~lA~~~g~-~~--~~--~~~g~t~a~~~al~~l~----~---------------~gd~Vlv~~~~h~s~~~~~~~~G~~~ 126 (387)
T PRK09331 71 DLAEFLGM-DE--AR--VTHGAREGKFAVMHSLC----K---------------KGDYVVLDGLAHYTSYVAAERAGLNV 126 (387)
T ss_pred HHHHHhCC-Cc--EE--EeCCHHHHHHHHHHHhc----C---------------CCCEEEECCCchHHHHHHHHHcCCEE
Confidence 45555544 32 23 57899999988776641 1 12258889999999999888889999
Q ss_pred EEecC--CCCCCcCHHHHHHHHHhhhhc-CCccEEEE--ec---CCccc--------hhh-----hhcCC----------
Q psy852 531 KILEP--DDKNSLRGATLRQVMQQDETM-GYIPFFVS--TT---LGTTS--------CYR-----KSQGI---------- 579 (891)
Q Consensus 531 ~~Vp~--d~~G~mD~~~Le~aI~~d~~~-g~ip~~Vv--at---aGTT~--------c~~-----~ldGi---------- 579 (891)
+.+|. ++++.+|+++|+++|++.... +..+-+|+ .. .|+.. |++ ++|+.
T Consensus 127 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~ 206 (387)
T PRK09331 127 REVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDG 206 (387)
T ss_pred EEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCH
Confidence 99998 788999999999999763211 11122222 22 33332 433 23321
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
.++|.+++++|||+++|.+.|+++++++ .+.........|.... ... ++. ..+...++.++.++..+-..
T Consensus 207 ~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~----~~~--~~~-~~~~~~~~~~~aal~~~~~~ 278 (387)
T PRK09331 207 KKLGADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKE----VEL--LGC-TLRGAPLVTLMASFPHVVER 278 (387)
T ss_pred HHcCCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccc----eee--ece-ecCchHHHHHHHHHHHHHHH
Confidence 2489999999999999999999888653 2322111111121100 000 000 01222344455555433221
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcc--hhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENN--LIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~--~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
.+.+++.+++++++.+.|+++++++++.+ ...+++.|..+.... .........+.+.|.+.|+....+ ...
T Consensus 279 --~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~---~~~ 353 (387)
T PRK09331 279 --VKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP---GAT 353 (387)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc---CCc
Confidence 23566778899999999999999999853 245677787642210 011122356888998889862211 122
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 734 DEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 734 ~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.++.+.+...|++|+++++++|+++..
T Consensus 354 ~i~ri~~~g~t~~di~~l~~aL~~i~~ 380 (387)
T PRK09331 354 KEFKLSTYGLTWEQVEYVADAFKEIAE 380 (387)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 333333334689999999999998763
No 86
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.33 E-value=1e-10 Score=130.50 Aligned_cols=254 Identities=14% Similarity=0.030 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCC
Q psy852 53 PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHP 132 (891)
Q Consensus 53 p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~ 132 (891)
+...++-..+.+.+++++|.++.... + .+++||+......+..+...
T Consensus 27 ~~~~~~~~~~~~~la~~~~~~~~~~~-------i--------------------~~~~~gt~~l~~~~~~~~~~------ 73 (355)
T TIGR03301 27 SEFNDVTDQVRDRLLALAGGDDNHTC-------V--------------------LLQGSGTFAVEATIGSLVPR------ 73 (355)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcE-------E--------------------EEeCCcHHHHHHHHHhccCC------
Confidence 34457778889999999999864210 0 12456654322222222100
Q ss_pred ccccccccCCeEEEecCCCChH-HHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc
Q psy852 133 FVDEGVLLSKLMAYCSKEAHSC-VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211 (891)
Q Consensus 133 ~~~~g~~~~~~~v~~S~~~H~S-v~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav 211 (891)
++-+++.+...+.+ +..++...|.+++.|+.+.++.+|+++|++.+++.. .+.+|+.+..+|.+|.+
T Consensus 74 --------~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~~G~~ 141 (355)
T TIGR03301 74 --------DGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADP----DITHVATVHHETTTGIL 141 (355)
T ss_pred --------CCeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCC----CceEEEEEecCCcccch
Confidence 12234454444444 345556677899999998889999999999987532 24577788889999999
Q ss_pred cCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcc
Q psy852 212 DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKK 291 (891)
Q Consensus 212 Dpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 291 (891)
.|+++|+++|+++++++++|++++-.. .
T Consensus 142 ~~~~~i~~l~~~~~~~livD~~~s~g~-~--------------------------------------------------- 169 (355)
T TIGR03301 142 NPLEAIAKVARSHGAVLIVDAMSSFGA-I--------------------------------------------------- 169 (355)
T ss_pred hHHHHHHHHHHHcCCEEEEEeccccCC-c---------------------------------------------------
Confidence 999999999999999999998661000 0
Q ss_pred cCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCc
Q psy852 292 IHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKW 371 (891)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~ 371 (891)
. .. ++.. .+|.+..++|||
T Consensus 170 ------------------------------------------~--------------~~----~~~~-~~d~~~~s~~K~ 188 (355)
T TIGR03301 170 ------------------------------------------P--------------ID----IEEL-DVDALIASANKC 188 (355)
T ss_pred ------------------------------------------c--------------cc----hhhc-CccEEEecCCcc
Confidence 0 00 0000 368999999999
Q ss_pred CCccCCceEEEEeccccchhhcccCccccCCCCCCccccc--ccccCCCCCh-hHHHHHHHHHHhcHHH-HHHHHHHHHH
Q psy852 372 LLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR--HWGIPLSRRF-RSLKLWFVIRTYGLSG-LQKYIRRHCE 447 (891)
Q Consensus 372 ~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~sr~~-~~l~~w~~l~~~g~~G-~~~ii~~~le 447 (891)
+++|-+.|+++++++. +........+|..+.. ..+.+. ......+-+. ...++..+++.+-.+| +.+..++..+
T Consensus 189 l~~~~G~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~ 266 (355)
T TIGR03301 189 LEGVPGFGFVIARRDL-LEASAGNARSLYLDLY-DQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRR 266 (355)
T ss_pred cccCCceeEEEECHHH-HHHhhCCCCCceeeHH-HHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999889999887642 2111111111110000 000000 0001111122 2345677888887776 8889999999
Q ss_pred HHHHHHHhhccCCccccccC
Q psy852 448 LAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~ 467 (891)
+++++.+.|++. +++++.+
T Consensus 267 ~~~~~~~~L~~~-g~~~~~~ 285 (355)
T TIGR03301 267 NRELLVDGLRAL-GFQPLLP 285 (355)
T ss_pred HHHHHHHHHHHc-CCeeecC
Confidence 999999999875 6776543
No 87
>PLN02721 threonine aldolase
Probab=99.31 E-value=2.4e-10 Score=127.73 Aligned_cols=246 Identities=14% Similarity=0.148 Sum_probs=153.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH---HHHcCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka---a~l~gv~v~~Vp~d~~G~mD~~ 544 (891)
++++|+++++.++.+.... +.-.|++++.+|+++.+. +...|++++.+|.++++.+|++
T Consensus 60 ~~~~Gs~a~~~~l~~~~~~------------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~ 121 (353)
T PLN02721 60 FVPSGTMGNLISVLVHCDV------------------RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLD 121 (353)
T ss_pred EecCccHHHHHHHHHHccC------------------CCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHH
Confidence 4567888888676653210 122488888999988773 4567899999999999999999
Q ss_pred HHHHHHHhhhhcC---CccEEEEec----CCccc-----------hhhh-----hc-----------C------CCCccE
Q psy852 545 TLRQVMQQDETMG---YIPFFVSTT----LGTTS-----------CYRK-----SQ-----------G------IEYADS 584 (891)
Q Consensus 545 ~Le~aI~~d~~~g---~ip~~Vvat----aGTT~-----------c~~~-----ld-----------G------i~~aDS 584 (891)
+|++.|++....+ ...++++.+ .|++. |.++ +| + ...+|+
T Consensus 122 ~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~ 201 (353)
T PLN02721 122 AIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADS 201 (353)
T ss_pred HHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCE
Confidence 9999998532111 112233221 34432 3321 12 1 236899
Q ss_pred EEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHH
Q psy852 585 FNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIR 664 (891)
Q Consensus 585 Is~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~ 664 (891)
+++++|||+++|. |++++.+++.+.........+ ..+ .+.. .+.......+.+...+.++
T Consensus 202 ~~~s~sK~l~~~~--G~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~---~~~~~~~~~~l~~~~~~~~ 261 (353)
T PLN02721 202 VSVCLSKGLGAPV--GSVIVGSKSFIRKAKRLRKTL------------GGG---MRQV---GVLAAAALVALQENVPKLE 261 (353)
T ss_pred EEEecccccCCce--eeEEecCHHHHHhHHHHHHhc------------CCC---eehh---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 445555554332211110000 000 0000 1111111112223333455
Q ss_pred HHHHHHHHHHHHhccCCCcEE-eCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCC
Q psy852 665 RHCELAKLFEGKVRRDPRFEI-SNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQER 742 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~ei-l~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~ 742 (891)
+..++++++.+.|++++++++ +.++..+.+.|++.... ......+.+.|.+.|+.+... +...+ ++++.+
T Consensus 262 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~gi~v~~~----~~~~lR~~~~~~ 333 (353)
T PLN02721 262 DDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS----RITAEKLCKSLEEHGVLLMPG----NSSRIRVVTHHQ 333 (353)
T ss_pred HHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCc----cccHHHHHHHHHhCCcEEecC----CCceEEEEecCc
Confidence 667788999999999888876 66677888999985310 124567899999889885433 33456 999989
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy852 743 KRKDDLAYKRSFFVRML 759 (891)
Q Consensus 743 tT~edId~li~~L~ei~ 759 (891)
++++||++++++|++++
T Consensus 334 ~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 334 ISDSDVQYTLSCFQQAA 350 (353)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 88
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.31 E-value=1.8e-10 Score=129.26 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=154.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM--- 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~--- 524 (891)
+.+.+++.+...+. +|+ +++|+++++..++.+...... ..++..|+++..+|+++..+..
T Consensus 47 ~r~~la~~~g~~~~-~v~--~~~g~t~a~~~~l~~l~~~~~--------------~~g~~~vi~~~~~~~s~~~~~~~~~ 109 (353)
T TIGR03235 47 ARKQVAEALGADTE-EVI--FTSGATESNNLAILGLARAGE--------------QKGKKHIITSAIEHPAVLEPIRALE 109 (353)
T ss_pred HHHHHHHHhCCCCC-eEE--EeCCHHHHHHHHHHHHHHhcc--------------cCCCCeeeEcccccHHHHHHHHHHH
Confidence 33466666665444 566 778999999888766543210 0123469999999999877764
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC---------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi--------- 579 (891)
..|++++.||.++++.+|+++|++++++++ ..+++. +..|+.. |++ ++|+.
T Consensus 110 ~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~----~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~ 185 (353)
T TIGR03235 110 RNGFTVTYLPVDESGRIDVDELADAIRPDT----LLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD 185 (353)
T ss_pred hcCCEEEEEccCCCCcCCHHHHHHhCCCCC----EEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccc
Confidence 358899999999999999999999986532 122222 2345543 433 23431
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYG 655 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG 655 (891)
..+|++++++||| ++|.|+|+++++++..... ...+.+...... ..+. .++... ..+.+..+++.+
T Consensus 186 ~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~--~~~~~~~~~~~~-----~~~~-~gt~~~~~~~al~~al~~~- 255 (353)
T TIGR03235 186 LSADRIDLISCSGHKI-YGPKGIGALVIRKRGKPKA--PLKPIMFGGGQE-----RGLR-PGTLPVHLIVGMGEAAEIA- 255 (353)
T ss_pred ccccCCCEEEeehhhc-CCCCceEEEEEccCccccc--ccCceeeCCCCc-----Cccc-cCCCChHHHHHHHHHHHHH-
Confidence 3589999999999 5699999999998732111 111111111100 0000 111111 123445555543
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
.++.+++.++..++++++.+.|++ ++++++.++. .++++|.+.+. ..+.+.+.|.+ ++.+..+..
T Consensus 256 ~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~v~~~L~~-~i~v~~g~~ 323 (353)
T TIGR03235 256 RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGV-------NSEALIVNLRA-DAAVSTGSA 323 (353)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCc-------CHHHHHHHHhC-CeEEEchhh
Confidence 367888899999999999999988 8999986543 46899987543 35678888864 766554443
No 89
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.31 E-value=1.6e-09 Score=133.45 Aligned_cols=246 Identities=15% Similarity=0.078 Sum_probs=177.1
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC----Cccc---------h
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTS---------C 572 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata----GTT~---------c 572 (891)
+.+|++|..+|.+.-+++.+.|++++.||+|++|.+|+++|+++|++. +..+.+|+.+. |... |
T Consensus 578 R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~---~~~taaV~iT~pst~G~~e~~I~eI~~ia 654 (939)
T TIGR00461 578 RNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH---GDELAAVMVTYPSTHGVFEPTIQHACDIV 654 (939)
T ss_pred CCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc---CCceEEEEEEeCCcCceecccHHHHHHHH
Confidence 568999999999999999999999999999999999999999999862 22344454433 4432 2
Q ss_pred hh-----hhcC-------------CCCccEEEEcCcccCCccccc-----EEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 573 YR-----KSQG-------------IEYADSFNVNVNKWLLTAFDS-----SCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 573 ~~-----~ldG-------------i~~aDSIs~d~HK~L~~P~g~-----G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
++ ++|| -.+||.+.+|+||++++|.|+ |.+.+|+. +.+.+....-. ...+...
T Consensus 655 h~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~~v~-~t~d~~g- 730 (939)
T TIGR00461 655 HSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKHDVV-SMITGIG- 730 (939)
T ss_pred HHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCCccc-ccccCCC-
Confidence 22 2333 346899999999999988877 99999965 43333221110 0000000
Q ss_pred cccCCcccccccccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCC
Q psy852 630 DYRHWGIPLSRRFRS----LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSE 701 (891)
Q Consensus 630 ~~~~~ti~~SRr~~a----L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~ 701 (891)
...+.+...++.++. ++.|+.|+.+|.+|+++..+.++.+|+|+.++|++ +++++.+. ..+-++|++.+.
T Consensus 731 req~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~ 808 (939)
T TIGR00461 731 GSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL 808 (939)
T ss_pred CccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch
Confidence 001122334455554 89999999999999999999999999999999987 56776542 345688888653
Q ss_pred cchhhhhhHHHHHHHHHhCCcEEEeec-cccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 702 NNLIADQNNRKLLEDINASGRLHMVPA-SQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 702 ~~~~~d~ln~~L~~~L~~~G~~~~s~s-~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
.++.+..+..+.++|.+.|+...+.+ .+.+ .+ +.+.-.++++|||++++++.++.....
T Consensus 809 -~~~~g~~~~dIakrL~d~G~hapt~~~pv~g--~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 809 -KAKTGIEAIDVAKRLQDYGFHAPTLSFPVPG--TLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred -hhhcCCCHHHHHHHHHhCCeeccccCCccCC--eEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 23456778999999999998754433 2233 45 777778899999999999999875433
No 90
>KOG1368|consensus
Probab=99.29 E-value=6.6e-11 Score=125.71 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=176.3
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH---H
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---M 524 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa---~ 524 (891)
+-++.++...+-.++ |-.+||..|++|+..--.+ +.--|++.+.+|.-...+. .
T Consensus 61 LE~~vA~l~GKEAgL-----Fv~SGTmgNllaIm~Hc~~------------------rg~eii~gd~~HI~~~E~gg~s~ 117 (384)
T KOG1368|consen 61 LEQRVAELFGKEAGL-----FVPSGTMGNLLAIMVHCHQ------------------RGSEIIVGDRAHIHRYEQGGISQ 117 (384)
T ss_pred HHHHHHHHhCcccee-----eecccccccHHHHHHHhcC------------------CCceEEeccchheeehhccChhh
Confidence 344555555543432 4557899999998764321 2335999999998776665 3
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhh--cCCccEEEE--ec---CCccc------------hhh-----hhcC--
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDET--MGYIPFFVS--TT---LGTTS------------CYR-----KSQG-- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~--~g~ip~~Vv--at---aGTT~------------c~~-----~ldG-- 578 (891)
+.++.+++|...++|.||++++|++|....- .....-+|+ +| .|... |.+ |+||
T Consensus 118 l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 118 LAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred hccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh
Confidence 5788999999999999999999999985321 112222333 22 23222 332 5676
Q ss_pred ---------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc
Q psy852 579 ---------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 579 ---------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
.+.+||+++++.|.|++|. |.+++.+++++.++- +++. ++ ..
T Consensus 198 i~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV--GSViVG~k~FI~kA~-----~~RK-----------al-----GG 254 (384)
T KOG1368|consen 198 IFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV--GSVIVGSKDFIDKAR-----HFRK-----------AL-----GG 254 (384)
T ss_pred hhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc--ccEEEccHHHHHHHH-----HHHH-----------Hh-----cC
Confidence 2668999999999999998 568888887665431 1110 00 11
Q ss_pred chHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 644 SLKLWFVIRTYGLSGLQK---YIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~---~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
++++-.+|...+...+++ .+++.++.|+.|++.+.+.+++++-.+ .+.|+|...+... .-..+.+...+.+
T Consensus 255 GmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~-----~~~~~~l~~~~~k 329 (384)
T KOG1368|consen 255 GMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQA-----RLTAEELCKFLEK 329 (384)
T ss_pred chhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccc-----cCCHHHHHHHHHH
Confidence 344445555555444443 566779999999999998888998655 7888888776543 3456789999999
Q ss_pred CCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHH
Q psy852 720 SGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 720 ~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei 758 (891)
.|+..+.+.+.+ ..+++++.+|.++++.++.++.+.
T Consensus 330 ~gi~lm~~~s~r---~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 330 NGILLMGGASRR---IRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred CCeEEeeccccc---eEEEEEEecCHHHHHHHHHHHHHH
Confidence 999877765543 229999999999999999999643
No 91
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.29 E-value=3.2e-10 Score=126.53 Aligned_cols=283 Identities=10% Similarity=0.002 Sum_probs=170.7
Q ss_pred HHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHH
Q psy852 447 ELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAM 524 (891)
Q Consensus 447 elAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~ 524 (891)
++.+.+++.+...+. .+++ +++|+|+++..++...-. .+.-+++.+...+.+ ...++.
T Consensus 35 ~~~~~la~~~~~~~~~~~i~--~~~~gt~~l~~~~~~~~~------------------~~~~vi~~~~~~~~~~~~~~a~ 94 (355)
T TIGR03301 35 QVRDRLLALAGGDDNHTCVL--LQGSGTFAVEATIGSLVP------------------RDGKLLVLINGAYGERLAKICE 94 (355)
T ss_pred HHHHHHHHHhcCCCCCcEEE--EeCCcHHHHHHHHHhccC------------------CCCeEEEECCCchhhHHHHHHH
Confidence 344466666665444 2344 577888888877655321 012235455544444 456677
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhhh-----hcCC----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~~-----ldGi---------- 579 (891)
..|.+++.+|.+.++.+|+++|++++.+..+.. ....+. +..|+.. |+++ +|+.
T Consensus 95 ~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~-~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~ 173 (355)
T TIGR03301 95 YLGIPHTDLNFSEYEPPDLNRIEEALAADPDIT-HVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDI 173 (355)
T ss_pred HcCCceEEEecCCCCCCCHHHHHHHHHhCCCce-EEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccch
Confidence 889999999998889999999999998642211 111111 2345543 4332 2221
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccC--Cccccccc-ccchHHHHHHHHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH--WGIPLSRR-FRSLKLWFVIRTY 654 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~--~ti~~SRr-~~aL~lW~~L~~l 654 (891)
-.+|.+..++|||+++|.|+|+++++++. +.........|..+.. ..+.... .....+-. .....+..+++.+
T Consensus 174 ~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~ 251 (355)
T TIGR03301 174 EELDVDALIASANKCLEGVPGFGFVIARRDL-LEASAGNARSLYLDLY-DQWAYMEKTGKWRFTPPTHTVYAFAQALEEL 251 (355)
T ss_pred hhcCccEEEecCCcccccCCceeEEEECHHH-HHHhhCCCCCceeeHH-HHHHHhhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 24799999999999999999999988652 2221101111100000 0000000 00000111 1123456677777
Q ss_pred HHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--ee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 655 GLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--LG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
..+| +.+..++..++++++.+.|++. +++++.++. .+ +++|++++.. +....++.++|.++|++...+...
T Consensus 252 ~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~~ 326 (355)
T TIGR03301 252 EAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP----DFDFDDFYQELKERGFVIYPGKLT 326 (355)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC----cchHHHHHHHHHHCCEEEECCccc
Confidence 7776 8888899999999999999886 677765432 33 5678875321 123467889999999875443322
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
. ...+ |+++.+++++|++++++.|+++
T Consensus 327 ~-~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 327 L-ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred c-ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 2 2566 9998889999999999999864
No 92
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.26 E-value=3e-11 Score=134.56 Aligned_cols=264 Identities=29% Similarity=0.439 Sum_probs=206.6
Q ss_pred HHHHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccc-cccceEEEecccchHHHHHHH
Q psy852 446 CELAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 446 lelAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~-~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
-+.++++.+.+... +.-+++ +++|+|++|++++.+++.+..++.+. .+. ..++.+|+++..+|+++.+++
T Consensus 41 ~~~~~~~~~~~g~~~~~~~~~--~t~ggt~a~~~al~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~h~~~~~~~ 112 (345)
T cd06450 41 AEVVNWLAKLFGLPSEDADGV--FTSGGSESNLLALLAARDRARKRLKA------GGGRGIDKLVIVCSDQAHVSVEKAA 112 (345)
T ss_pred HHHHHHHHHHhCCCCCCCCEE--EeCChhHHHHHHHHHHHHHhhhhhhc------ccccccCCeEEEEcCcchhHHHHHH
Confidence 34455666666542 223455 88999999999999998865443221 111 124579999999999999999
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-------------hhh-----hhcC-------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------CYR-----KSQG------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-------------c~~-----~ldG------- 578 (891)
.+++.+++.||+++++.+|+++|+++|+++.+++..+.+|+.+.+++. |++ ++|+
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~ 192 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLL 192 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHh
Confidence 988999999999999999999999999886666655666665554433 333 2232
Q ss_pred -----------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 579 -----------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 579 -----------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
++.+|++++|+|||+++|++||+++++ ++++
T Consensus 193 ~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~--------------------------------------~~~~ 234 (345)
T cd06450 193 PFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR--------------------------------------ALKL 234 (345)
T ss_pred hChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH--------------------------------------HHHH
Confidence 247999999999999999999988664 6789
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
|.+++.++..|+++++++..++++++.+.|++.++++++.+++.++|+|++.+.. +.+..+.++.++|.++|.+++.+
T Consensus 235 ~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~--~~~~~~~~i~~~L~~~g~~~~~~ 312 (345)
T cd06450 235 WATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSV--KLDELNYDLSDRLNERGGWHVPA 312 (345)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcc--hhhHHHHHHHHHHHhcCCEEEEe
Confidence 9999999999999999999999999999999999999988888999999996520 11235678999999998776766
Q ss_pred ccccCCeEE-EEecCC-CCHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQER-KRKDDLAYKRSFFVR 757 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~-tT~edId~li~~L~e 757 (891)
....+...+ ++++.+ +|.+|||+++++|++
T Consensus 313 ~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 313 TTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 555556677 998875 699999999999975
No 93
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.25 E-value=2.3e-10 Score=125.78 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=74.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC------CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK------NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~------g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I 217 (891)
.|+++..+|.|+..++.+.+.++++++++.+ +.+|+++|++.+++.. .+.+|++|.. |.+|.+.|+++|
T Consensus 101 ~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~----~~k~v~l~~p-~~~G~~~dl~~I 175 (294)
T cd00615 101 KILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP----DAKAAVITNP-TYYGICYNLRKI 175 (294)
T ss_pred EEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC----CceEEEEECC-CCCCEecCHHHH
Confidence 4888889999999999888888898887532 4799999999997532 2456777766 579999999999
Q ss_pred HHHHHHcCCceeeeccccCCc
Q psy852 218 GPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++|+++|++++||+|||..+
T Consensus 176 ~~~~~~~g~~livDeA~~~~~ 196 (294)
T cd00615 176 VEEAHHRGLPVLVDEAHGAHF 196 (294)
T ss_pred HHHHHhcCCeEEEECcchhhh
Confidence 999999999999999997544
No 94
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.25 E-value=1.7e-09 Score=122.67 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=77.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhc-CCcceEEEeecccCccccccCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
.|+++..+|+|...++...+.+++.++.+ .++.+|+++|++.+++.... +..+.+|+++..++.+|.+.|+++|+++
T Consensus 92 ~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~l 171 (370)
T TIGR02539 92 WVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171 (370)
T ss_pred EEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHH
Confidence 47788899999998888888899999986 35889999999999753221 1235688888899999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.|++
T Consensus 172 a~~~~~~livDea~~ 186 (370)
T TIGR02539 172 CREKGVPLLLNCAYT 186 (370)
T ss_pred HHHcCCeEEEECccc
Confidence 999999999999983
No 95
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.24 E-value=3.8e-10 Score=127.34 Aligned_cols=252 Identities=14% Similarity=0.052 Sum_probs=157.6
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC
Q psy852 52 SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131 (891)
Q Consensus 52 ~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~ 131 (891)
++...+....+.+.+++++|.++... -+ ..+++|+..-+..+..+. ..
T Consensus 32 ~~~~~~~~~~~~~~l~~l~~~~~~~~-------~i--------------------~~~~~gt~~l~~~~~~l~--~~--- 79 (368)
T PRK13479 32 DDDFNALTASVRAKLVAIATGEEGYT-------CV--------------------PLQGSGTFSVEAAIGSLV--PR--- 79 (368)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCce-------EE--------------------EEcCCcHHHHHHHHHhcc--CC---
Confidence 35556778889999999999864310 00 124566543333233221 11
Q ss_pred CccccccccCCeEEEecCCCChHH--HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc
Q psy852 132 PFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 132 ~~~~~g~~~~~~~v~~S~~~H~Sv--~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G 209 (891)
++- +++....+|.. .+.+...|.+++.|+++.++.+|+++|++.+++..+ +.+|.++..+|.+|
T Consensus 80 ---------~~~-vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG 145 (368)
T PRK13479 80 ---------DGK-VLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPR----ITHVALVHCETTTG 145 (368)
T ss_pred ---------CCe-EEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCC----CcEEEEEcccCccc
Confidence 122 33333445544 355566778999999998889999999999875321 34778889999999
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhh
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKL 289 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 289 (891)
.+.|+++|.++|+++|+++++|++++ +...
T Consensus 146 ~~~~~~~i~~l~~~~~~~livDa~~~-~g~~------------------------------------------------- 175 (368)
T PRK13479 146 ILNPLDEIAAVAKRHGKRLIVDAMSS-FGAI------------------------------------------------- 175 (368)
T ss_pred cccCHHHHHHHHHHcCCEEEEEcccc-cCCc-------------------------------------------------
Confidence 99999999999999999999997661 0000
Q ss_pred cccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCC
Q psy852 290 KKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVN 369 (891)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~H 369 (891)
..++ ... .+|.+..++|
T Consensus 176 ----------------------------------------------------------~~~~----~~~-~~d~~v~s~~ 192 (368)
T PRK13479 176 ----------------------------------------------------------PIDI----AEL-GIDALISSAN 192 (368)
T ss_pred ----------------------------------------------------------cccc----ccc-CceEEEecCc
Confidence 0000 000 3588899999
Q ss_pred CcCCccCCceEEEEeccccchhhcccCccccCCCC-CCc--ccccccccCCCCC-hhHHHHHHHHHHhcHH-HHHHHHHH
Q psy852 370 KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH-EGA--IDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIRR 444 (891)
Q Consensus 370 K~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~-~~~--~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~-G~~~ii~~ 444 (891)
||+++|.+.|+++++++. +........+|..+.. .-. .....+.+ +.. ...+.+..+++.+-.+ ++.+.+++
T Consensus 193 K~l~g~~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~l~~al~~l~~~~~~~~~~~~ 269 (368)
T PRK13479 193 KCIEGVPGFGFVIARRSE-LEACKGNSRSLSLDLYDQWAYMEKTGQWRF--TPPTHVVAAFYQALLELEEEGGVPARGAR 269 (368)
T ss_pred cccccCCCceEEEECHHH-HHHhhcCCCCeeecHHHHHhhhcccCCCCC--CCcHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 999999999999997642 1111111111111000 000 00001111 112 2345677888877655 57888899
Q ss_pred HHHHHHHHHHhhccCCcccccc
Q psy852 445 HCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~ 466 (891)
..++++++.+.|.+. +++++.
T Consensus 270 ~~~~~~~l~~~L~~~-g~~~~~ 290 (368)
T PRK13479 270 YANNQRTLVAGMRAL-GFEPLL 290 (368)
T ss_pred HHHHHHHHHHHHHHc-CCcccC
Confidence 999999999999876 677663
No 96
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.24 E-value=3.2e-09 Score=119.82 Aligned_cols=270 Identities=12% Similarity=0.043 Sum_probs=163.1
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+.. + +++ +++|+++++..++.+.. + +.-.|+++..+|++...++...|++
T Consensus 51 ~~la~~~g~-~--~i~--~~~g~t~al~~~l~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~g~~ 106 (361)
T cd06452 51 HDLAEFLGM-D--EAR--VTPGAREGKFAVMHSLC----E---------------KGDWVVVDGLAHYTSYVAAERAGLN 106 (361)
T ss_pred HHHHHHcCC-c--eEE--EeCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcchHHHHHHHhcCCE
Confidence 344444443 2 344 67889999887776531 1 1224788889999999888888999
Q ss_pred EEEecCCCCC--CcCHHHHHHHHHhhhhc---CCccEEEEec---CCccc--------hhh-----hhcCC---------
Q psy852 530 LKILEPDDKN--SLRGATLRQVMQQDETM---GYIPFFVSTT---LGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 530 v~~Vp~d~~G--~mD~~~Le~aI~~d~~~---g~ip~~Vvat---aGTT~--------c~~-----~ldGi--------- 579 (891)
++.+|.+.++ .+|+++|++++++..+. ....++++.. .|+.. |++ .+|+.
T Consensus 107 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~ 186 (361)
T cd06452 107 VREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVS 186 (361)
T ss_pred EEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCC
Confidence 9999998765 99999999999753221 1112222221 34332 333 12321
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc--cccccchHHHHHHHHH
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL--SRRFRSLKLWFVIRTY 654 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~--SRr~~aL~lW~~L~~l 654 (891)
..+|.+..++||++++|.++|+++.+++ .+.........| . ....+..+ ++...++.++.++..+
T Consensus 187 ~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~al~~~ 256 (361)
T cd06452 187 GKELGADFIVGSGHKSMAASAPIGVLATTEE-WADIVFRTSQMF-K--------IKEVELLGCTLRGAPLVTLMASFPHV 256 (361)
T ss_pred HHHcCCCEEEecCCccccCCCCeEEEEECHH-HHHHHhcccccc-c--------cceeeeeccccCchHHHHHHHHHHHH
Confidence 1379999999999999999998888643 332221111111 1 00011111 1122344555555443
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC--CCceeEEEEEecCCcch--hhhhhHHHHHHHHHhCCcEEEeeccc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN--DVRLGLVCFRLRSENNL--IADQNNRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~--~~~~~iV~Fr~~~~~~~--~~d~ln~~L~~~L~~~G~~~~s~s~~ 730 (891)
. ...+.+++..+++++|.+.|+++++++++. +...|++.|+....... ..+.....+.+.|.++|+.. .. ..
T Consensus 257 -~-~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~-~~-~~ 332 (361)
T cd06452 257 -K-ERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHG-IK-PG 332 (361)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceE-Ec-CC
Confidence 2 223456666778899999999999999874 34567888887521100 00112236889998899872 11 11
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. ..++ +++ ...|++|++.++++|+++.
T Consensus 333 ~-~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 L-TRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred C-ceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 1 2344 555 2358999999999998653
No 97
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.23 E-value=1.7e-09 Score=121.99 Aligned_cols=283 Identities=11% Similarity=0.048 Sum_probs=170.2
Q ss_pred HHHHHHHHHhhccCCc-cccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHH
Q psy852 446 CELAKLFEGKVRRDPR-FEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKA 522 (891)
Q Consensus 446 lelAr~l~~~L~~~~~-~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Ka 522 (891)
-++.+.+++.+...+. .+++ +++++++++..++...-. .++-+++.+ ..++.. .+.
T Consensus 40 ~~~~~~l~~l~~~~~~~~~i~--~~~~gt~~l~~~~~~l~~------------------~~~~vlv~~-~~~~~~~~~~~ 98 (368)
T PRK13479 40 ASVRAKLVAIATGEEGYTCVP--LQGSGTFSVEAAIGSLVP------------------RDGKVLVPD-NGAYGARIAQI 98 (368)
T ss_pred HHHHHHHHHHhCCCCCceEEE--EcCCcHHHHHHHHHhccC------------------CCCeEEEEe-CCchHHHHHHH
Confidence 3344455666655332 3344 677888888877665411 012234433 334332 466
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhhh-----hcCC--------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYRK-----SQGI-------- 579 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~~-----ldGi-------- 579 (891)
+...|++++.||.+.++.+|+++|++++++.... ....+.. +..|+.. |+++ +|+.
T Consensus 99 ~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~-~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~ 177 (368)
T PRK13479 99 AEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI-THVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPI 177 (368)
T ss_pred HHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC-cEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccc
Confidence 7778899999999888899999999999764211 1122222 2345543 4331 2221
Q ss_pred ----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCc-cccCCCCC--ccccCCccccccc-ccchHHHHHH
Q psy852 580 ----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLY-LQHGHEGA--IDYRHWGIPLSRR-FRSLKLWFVI 651 (891)
Q Consensus 580 ----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Y-l~~~~e~~--~~~~~~ti~~SRr-~~aL~lW~~L 651 (891)
..+|.+..+.|||+++|.|+|+++++++. +.........| +....... .....+.+ +-. ...+.+..++
T Consensus 178 ~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~l~~al 254 (368)
T PRK13479 178 DIAELGIDALISSANKCIEGVPGFGFVIARRSE-LEACKGNSRSLSLDLYDQWAYMEKTGQWRF--TPPTHVVAAFYQAL 254 (368)
T ss_pred cccccCceEEEecCccccccCCCceEEEECHHH-HHHhhcCCCCeeecHHHHHhhhcccCCCCC--CCcHHHHHHHHHHH
Confidence 24799999999999999999999997652 22111111111 10000000 00000000 111 1234566777
Q ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--e-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee
Q psy852 652 RTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--L-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 652 ~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~ 727 (891)
+.+..+ ++++.+++..++++++.+.|++. +++++.++. . .+++|.+.... +...+++.+.|.++|+.+..+
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~gi~v~~g 329 (368)
T PRK13479 255 LELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP----AYDFKEFYERLKEQGFVIYPG 329 (368)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCC----CcCHHHHHHHHHHCCEEEecC
Confidence 766555 47888899999999999999887 777764432 2 46788865321 113468899999999885433
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
. ......+ ++.+.++|++|+++++++|+++.
T Consensus 330 ~-~~~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 330 K-LTQVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred C-CCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 2 2223456 88777889999999999999876
No 98
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.22 E-value=2.7e-09 Score=122.43 Aligned_cols=279 Identities=10% Similarity=0.026 Sum_probs=167.8
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH--HHHHHHcCc
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV--EKAAMMAFV 528 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv--~Kaa~l~gv 528 (891)
.+++.+...++-.++ +++++++++..++... .+ +.-.|+++...|++. ...+...|.
T Consensus 50 ~l~~~~g~~~~~~vi--~~~~gt~a~~~a~~~~----~~---------------~Gd~Vlv~~~~~~~~~~~~~~~~~g~ 108 (401)
T PLN02409 50 DVKYIFKTKSGTPFI--FPTTGTGAWESALTNT----LS---------------PGDKVVSFRIGQFSLLWIDQMQRLNF 108 (401)
T ss_pred HHHHHhCCCCCCEEE--EeCCcHHHHHHHHHhc----CC---------------CCCEEEEeCCCchhHHHHHHHHHcCC
Confidence 444444443332444 5567777766555331 11 112366667788765 355566788
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc----------hhhh-----hcCC-----------
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS----------CYRK-----SQGI----------- 579 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~----------c~~~-----ldGi----------- 579 (891)
+++.++.+.++.+|+++|++++++++......++++ +..|... |+++ +|++
T Consensus 109 ~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~ 188 (401)
T PLN02409 109 DVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMD 188 (401)
T ss_pred ceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccc
Confidence 999999987777999999999987421111222222 2345543 2221 3332
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc--CCCccccCC-CCCccccCCcccccccc-cchHHHHHHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV--DPLYLQHGH-EGAIDYRHWGIPLSRRF-RSLKLWFVIRTY 654 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~--~~~Yl~~~~-e~~~~~~~~ti~~SRr~-~aL~lW~~L~~l 654 (891)
-.+|.+.+++|||+++|.|+|+++++++. +...... .+.|..-.. ......+.+. ..+=.+ ..+.+-.+++.+
T Consensus 189 ~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~Tp~~~~~~al~~al~~~ 266 (401)
T PLN02409 189 EWGVDVALTGSQKALSLPTGLGIVCASPKA-LEASKTAKSPRVFFDWADYLKFYKLGTYW-PYTPSIQLLYGLRAALDLI 266 (401)
T ss_pred ccCccEEEEcCccccCcCCCcceeEECHHH-HHHHhcCCCCCeecCHHHHHHHHhcCCCC-CCCccHHHHHHHHHHHHHH
Confidence 14799999999999999999999987662 2221111 111211000 0000000000 001111 123555666777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ce-eEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecc
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RL-GLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPAS 729 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~ 729 (891)
-..|++++.++..++++++.+.|++. +++++.+. .+ .+++|+++.. ...+++.+.|.+ .|+....+..
T Consensus 267 ~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~------~~~~~l~~~l~~~~~i~i~~G~~ 339 (401)
T PLN02409 267 FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEG------IDSAEIVKNAWKKYNLSLGLGLN 339 (401)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCC------CCHHHHHHHHHHhCCEEEEcCCC
Confidence 77899999999999999999999886 78988642 23 5677887421 234567777754 5665444443
Q ss_pred ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 730 QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 730 ~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+.++ ++.+.+++.+||..++++|++..
T Consensus 340 ~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 340 KVAGKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred cccCCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 3234556 99888999999999999999875
No 99
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.18 E-value=1.1e-09 Score=121.50 Aligned_cols=257 Identities=13% Similarity=0.058 Sum_probs=157.7
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH---H
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA---A 523 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka---a 523 (891)
++.+.+++.+. +. +++ +++||++++..++.+... +.-.|+++...|+++.++ +
T Consensus 36 ~l~~~~a~~~g--~~-~~~--~~~~gt~a~~~~~~~l~~-------------------~gd~v~~~~~~~~~~~~~~~~~ 91 (338)
T cd06502 36 KLEARAAELFG--KE-AAL--FVPSGTAANQLALAAHTQ-------------------PGGSVICHETAHIYTDEAGAPE 91 (338)
T ss_pred HHHHHHHHHhC--CC-eEE--EecCchHHHHHHHHHhcC-------------------CCCeEEEecCcceeeecCCcHH
Confidence 33445555555 22 344 567889998877765321 122477889999887664 3
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc---CCccEEEEe--cCCccc-----------hhh-----hhcC----
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETM---GYIPFFVST--TLGTTS-----------CYR-----KSQG---- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~---g~ip~~Vva--taGTT~-----------c~~-----~ldG---- 578 (891)
.+.|++++.+|.+. +.+|+++|++++++.... ....++++. +.|+.. |++ ++|+
T Consensus 92 ~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~ 170 (338)
T cd06502 92 FLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLA 170 (338)
T ss_pred HHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHH
Confidence 46789999999865 889999999999753211 111222221 234421 332 1232
Q ss_pred -------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccch
Q psy852 579 -------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSL 645 (891)
Q Consensus 579 -------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL 645 (891)
...+|.++.++|||++.|. |.+++.+++.+.........+ + .+-+..++
T Consensus 171 ~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~ 232 (338)
T cd06502 171 NAAAALGVALKTYKSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQA--------------G--GGMRQSGF 232 (338)
T ss_pred HHHHhcCCCHHHHHhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHh--------------C--CChhhHHH
Confidence 1357999999999999886 445555554332211110000 0 01112233
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH---hCCc
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN---ASGR 722 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~---~~G~ 722 (891)
.++..+..+...++.+.+++..++++++.+.|++.+ +. +.++..|++.+++.+. +.....+.+.+. +.|+
T Consensus 233 ~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~~~~~~~~~~v~~~~~-----~~~~~~l~~~l~~~~~~gi 305 (338)
T cd06502 233 LAAAGLAALENDLWLRRLRHDHEMARRLAEALEELG-GL-ESEVQTNIVLLDPVEA-----NAVFVELSKEAIERRGEGV 305 (338)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcC-CC-cccccCCeEEEecCCc-----cHHHHHHHHHHHHhhhCCE
Confidence 445555556555678888999999999999999874 33 3456788999987532 233444555543 5687
Q ss_pred EEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+... +...+ |+++.++|++|++++++++++
T Consensus 306 ~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 306 LFYAW----GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred EEEec----CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 64322 11456 999999999999999998864
No 100
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.17 E-value=5.2e-09 Score=116.60 Aligned_cols=299 Identities=15% Similarity=0.120 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH
Q psy852 442 IRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK 521 (891)
Q Consensus 442 i~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K 521 (891)
+.-.+++-..+.++|.++-|+.-+.--...|+..=+.+|++.|.....+.. ..+-++++++.||=..-.
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~-----------~~R~~~LIP~SAHGTNPA 172 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGE-----------GHRNICLIPDSAHGTNPA 172 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCC-----------CcCcEEEeeccccCCChh
Confidence 344455666677778777777666533345577888899999987654321 246689999999999999
Q ss_pred HHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc------hhh--------hhcCC------
Q psy852 522 AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS------CYR--------KSQGI------ 579 (891)
Q Consensus 522 aa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~------c~~--------~ldGi------ 579 (891)
.|.+.|.+++.|++|++|.+|+++|++.++++.+ -++|. +|.|-.. |.- .+||.
T Consensus 173 SAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~A----alMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 173 SAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLA----ALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred hHhhcCceEEEEecCCCCCccHHHHHHHhcccee----EEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence 9999999999999999999999999999996543 33333 3556554 321 24442
Q ss_pred -------CCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCC-CCCccccCCccccccc----c
Q psy852 580 -------EYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGH-EGAIDYRHWGIPLSRR----F 642 (891)
Q Consensus 580 -------~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~-e~~~~~~~~ti~~SRr----~ 642 (891)
-++|-+-++.||.+.+|-| .|=+-++.. |.+.+-....|...+. ...++. ..++.-++. +
T Consensus 249 G~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~pfLP~p~~~~~~~~y~~~~~~-~~s~g~~~a~~Gs~ 325 (496)
T COG1003 249 GLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LAPFLPGPVVYHDVGEYRLDYDG-KKSIGVSAAPYGSA 325 (496)
T ss_pred ccccccccccceEEeecccccccCCCCCCCCCCceehHhh--ccccCCCCcccCCCccccccCCC-CccceeeccccCcc
Confidence 4489999999999988865 555666644 3332221101100000 000111 122222222 2
Q ss_pred cc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 643 RS-LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 643 ~a-L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.. ...|+.++.+|.+|+++.-+..+-+|+|+..+|+. .++++-.+. -.=+.|..++. .+........+.++|.
T Consensus 326 ~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l-~~~~Gv~~~DvAKrLl 402 (496)
T COG1003 326 SILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPL-KKETGVRALDVAKRLL 402 (496)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHh-HhhcCCcHHHHHHHHH
Confidence 22 46899999999999999999999999999999986 566642222 22223333321 1223445678899999
Q ss_pred hCCcEEEeec-cccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPA-SQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 719 ~~G~~~~s~s-~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
+-|+.-.+-+ .+.-.+.+ |-....-+++++|++++++.++.+.
T Consensus 403 D~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 403 DYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred hcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9887521111 11112233 4444456999999999999999853
No 101
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.17 E-value=2.9e-09 Score=117.63 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q psy852 30 YPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSL 109 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~ 109 (891)
.|-++..+.....+.+...+...+...++|..+.++++..+|.+.... .+ .++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-------~~--------------------~~~ 65 (350)
T cd00609 13 PPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE-------EI--------------------VVT 65 (350)
T ss_pred CHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcc-------eE--------------------EEe
Confidence 344444444345556666667778888999999999999988643311 00 123
Q ss_pred cchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccH--HHHHHHHH
Q psy852 110 GGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRG--ATLRQVMQ 187 (891)
Q Consensus 110 ~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~--~~L~~~l~ 187 (891)
.||+ +++..++..... +...|+++..+|+++..++...+.+++.|+.++++.++. +.++..+.
T Consensus 66 ~~~t-~a~~~~~~~~~~--------------~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (350)
T cd00609 66 NGAQ-EALSLLLRALLN--------------PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKT 130 (350)
T ss_pred cCcH-HHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcC
Confidence 4554 333322222211 123488889999999999988888999999999888876 55554433
Q ss_pred hhhhcCCcceEEEeecccCccccccCHHHHH---HHHHHcCCceeeeccccCCc
Q psy852 188 QDETMGYIPFFVSTTLGTTSCCSFDNLAEIG---PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 188 ~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~---~i~~~~~~~lHvDaA~GG~~ 238 (891)
. .+.+|+++..++.+|.+.|++++. ++|+++|+++++|+|++++.
T Consensus 131 ~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~ 178 (350)
T cd00609 131 P------KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELV 178 (350)
T ss_pred c------cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhce
Confidence 2 255777888999999999977665 89999999999999997654
No 102
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.17 E-value=1.6e-09 Score=122.89 Aligned_cols=174 Identities=12% Similarity=0.017 Sum_probs=116.9
Q ss_pred cCCCCCCccccccCCCCCCHHHHHHHHHHHhcC-CCCCccccChh----HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q psy852 11 QVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIG-CIGFSWAASPS----CTELETIVLDWLGKAIGLPEKFLMYPPQGKN 85 (891)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~~~~~~~~p~----~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g 85 (891)
...+|.+-.|+++-.++...++++..+.....+ ++...+..+.. ++.+-.+.-+.+|+++|.+....
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~-------- 76 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFI-------- 76 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEE--------
Confidence 356899999999988887778777666665322 21112333333 45666677888999999864321
Q ss_pred CCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCe
Q psy852 86 ATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 165 (891)
Q Consensus 86 ~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~ 165 (891)
+++|. .. |...+ .... .+.-.|+++..+|.|+..++......
T Consensus 77 ----------------------~~sG~-~a-~~~~~---~~~~-----------~~~d~ii~d~~~H~sv~~~~~~~~~~ 118 (370)
T PRK05937 77 ----------------------VPSGY-MA-NLGLC---AHLS-----------SVTDYVLWDEQVHISVVYSLSVISGW 118 (370)
T ss_pred ----------------------ECChH-HH-HHHHH---HHhC-----------CCCCEEEEEhhhhHHHHHHHHHcCCc
Confidence 23333 32 32211 1110 01234777799999999998653322
Q ss_pred EEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 166 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 166 v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.+.. +..|+++|++.|++..+.+..+.+|+++..++.+|.+.|+++|+++|+++|+++|||+|++
T Consensus 119 ~~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~ 183 (370)
T PRK05937 119 HQSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHA 183 (370)
T ss_pred eEEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 2222 4578999999998654333335677788999999999999999999999999999999994
No 103
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.16 E-value=2.3e-09 Score=125.57 Aligned_cols=274 Identities=11% Similarity=0.059 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhcCCCC-----Cccc-cChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy852 30 YPSVLADMLSDAIGCIG-----FSWA-ASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPA 103 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~~-----~~~~-~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~ 103 (891)
-|++...+.+.+.|-.+ ..+. +.....++|..+.+...++||....... +
T Consensus 47 s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~--------~---------------- 102 (475)
T PLN03226 47 SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWG--------V---------------- 102 (475)
T ss_pred CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeE--------E----------------
Confidence 34555444444433332 2222 3456789999999999999998765321 0
Q ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEe---cC---CCChHHHHHHHHcCCeE--E--EEecC-
Q psy852 104 NQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYC---SK---EAHSCVEKAAMMAFVRL--K--ILEPD- 172 (891)
Q Consensus 104 ~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~---S~---~~H~Sv~kaa~~~~~~v--~--~V~~d- 172 (891)
....+.|+..+......+.+ +.-.|++ +. ..|-+......+....+ . ..+.|
T Consensus 103 --nv~~~SG~~AN~av~~aL~~---------------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~ 165 (475)
T PLN03226 103 --NVQPLSGSPANFAVYTALLQ---------------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE 165 (475)
T ss_pred --ecCcCchHHHHHHHHHHhCC---------------CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC
Confidence 01124565443333333321 1122444 22 34555444333322221 1 22334
Q ss_pred CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCc
Q psy852 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKT 252 (891)
Q Consensus 173 ~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~ 252 (891)
++|.+|+++|++.+.+.. |-+|++ |.+.+|..-|+++|+++|+++|++++||+|++-.++..
T Consensus 166 ~~g~iD~d~Le~~l~~~~-----pklIv~--~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~----------- 227 (475)
T PLN03226 166 STGLIDYDKLEKKAMLFR-----PKLIIA--GASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAA----------- 227 (475)
T ss_pred CCCCcCHHHHHHHHhhcC-----CeEEEE--ecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccC-----------
Confidence 579999999999987542 444544 34558899999999999999999999999883222100
Q ss_pred ccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccc
Q psy852 253 SFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFD 332 (891)
Q Consensus 253 ~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (891)
T Consensus 228 -------------------------------------------------------------------------------- 227 (475)
T PLN03226 228 -------------------------------------------------------------------------------- 227 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCCCCCcccc-
Q psy852 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDY- 410 (891)
Q Consensus 333 ~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~~~~~~~~- 410 (891)
|+ ..+| +..+|.++.++|||+.+|.+ |++++++.. ...+.. ...|... ...++.
T Consensus 228 -----~~------~~~p--------~~~~Div~~t~hK~L~GP~G-g~I~~~~~~--~~~~~~g~~~~~d~--~~~i~~a 283 (475)
T PLN03226 228 -----QE------AASP--------FEYCDVVTTTTHKSLRGPRG-GMIFFRKGP--KPPKGQGEGAVYDY--EDKINFA 283 (475)
T ss_pred -----CC------CCCC--------CCCCeEEEecCcccccCCCc-eEEEEchhh--cccccCCCccHHHH--HHHhccc
Confidence 00 0001 12589999999999999998 777776542 111100 0000000 000110
Q ss_pred cccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Q psy852 411 RHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND 467 (891)
Q Consensus 411 ~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~ 467 (891)
....++++-.. ...++..+++.+-..++.++.++..+++++|++.|.+ .+++++.+
T Consensus 284 ~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~~ 340 (475)
T PLN03226 284 VFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKLVTG 340 (475)
T ss_pred cCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEcC
Confidence 01123333222 3567788899888888999999999999999999988 78998853
No 104
>PLN02721 threonine aldolase
Probab=99.15 E-value=1.6e-09 Score=121.07 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=69.9
Q ss_pred EEEecCCCChHHHHH---HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcC-CcceEEEeec-ccCccccccC---HH
Q psy852 144 MAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG-YIPFFVSTTL-GTTSCCSFDN---LA 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka---a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g-~~p~~V~~t~-Gtt~~GavDp---l~ 215 (891)
.|+++..+|+++.+. +...|.+++.++.|++|.+|+++|++.+++....+ ..+.+|+++. =++.+|.+-| ++
T Consensus 82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~ 161 (353)
T PLN02721 82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTD 161 (353)
T ss_pred eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHH
Confidence 388888899988873 45678899999999999999999999997532211 1244555544 3556787655 78
Q ss_pred HHHHHHHHcCCceeeeccc
Q psy852 216 EIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~ 234 (891)
+|.++|+++|+++|+|+|+
T Consensus 162 ~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 162 KVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHcCCEEEEEchh
Confidence 9999999999999999987
No 105
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.15 E-value=4.1e-09 Score=117.74 Aligned_cols=271 Identities=13% Similarity=0.126 Sum_probs=162.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g 527 (891)
+.+.+++.+.. +. ++ ++++|++++..++.+.+. .+.-.|+++..+|.+...++...|
T Consensus 23 ~~~~la~~~~~-~~--~~--~~~sgt~al~~~l~~l~~------------------~~gd~vl~~~~~~~~~~~~~~~~g 79 (352)
T cd00616 23 FEKAFAEYLGV-KY--AV--AVSSGTAALHLALRALGI------------------GPGDEVIVPSFTFVATANAILLLG 79 (352)
T ss_pred HHHHHHHHhCC-Ce--EE--EECCHHHHHHHHHHHcCC------------------CCCCEEEeCCcchHHHHHHHHHcC
Confidence 33455555543 32 33 456889998888766421 012358899999999999888889
Q ss_pred ceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcCC-------------C
Q psy852 528 VRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQGI-------------E 580 (891)
Q Consensus 528 v~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldGi-------------~ 580 (891)
++++.+++++ ++.+|+++|++++++.+ ..++++...|... |+++ +|+. .
T Consensus 80 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~v~~~~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~ 155 (352)
T cd00616 80 ATPVFVDIDPDTYNIDPELIEAAITPRT----KAIIPVHLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT 155 (352)
T ss_pred CeEEEEecCCCcCCcCHHHHHHhcCcCC----eEEEEECCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc
Confidence 9999999987 79999999999886432 2334445566554 4331 2211 1
Q ss_pred CccEEEEc--CcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 581 YADSFNVN--VNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 581 ~aDSIs~d--~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
..|..+++ +|||+.+|. .|++++++++.+...-.. ...+.... ..+........-+...+..+ +.....+
T Consensus 156 ~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~aa--~~~~~l~ 228 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAERARLLRNHGRDRDR----FKYEHEILGYNYRLSEIQAA--IGLAQLE 228 (352)
T ss_pred CcceeEEcCCCCCCCcccC-ceEEEECCHHHHHHHHHHHHcCCCCCC----CccccceeeeccCcCHHHHH--HHHHHHH
Confidence 13555555 559995443 366666665433221110 00000000 00000011111112222222 2223456
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc---
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS--- 729 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~--- 729 (891)
++.+..++..++++++.+.|+++++++++.++ ...+++|++.+.. ......+.+.|.+.|+.....+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~L~~~gI~~~~~~~~~~ 304 (352)
T cd00616 229 KLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA----GESRDELIEALKEAGIETRVHYPPLH 304 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC----CCCHHHHHHHHHHCCCCeeeecCccc
Confidence 77888889999999999999999999987643 2468888886310 12456788889888874221110
Q ss_pred cc--------------------CCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 730 QE--------------------QNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 730 ~~--------------------g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
.. ...++ +++++++|++||++++++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 305 HQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred cCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 00 01456 88999999999999998874
No 106
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.15 E-value=1.9e-09 Score=121.72 Aligned_cols=271 Identities=12% Similarity=0.074 Sum_probs=157.0
Q ss_pred HHHHhhccCCccccccCCCCC-cchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 451 LFEGKVRRDPRFEISNDVRSS-ASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsg-gsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
.+++.+...+.-+++ +++| +|+++..++... ..+. .+..+|+++.-.|-+.+-+ .-.|++
T Consensus 52 ~l~~l~~~~~~~~vv--f~~gs~T~a~~~~~~~l----~~~~------------~~~~~i~~g~~~~~~~~~a-~~~g~~ 112 (355)
T cd00611 52 DLRELLNIPDNYKVL--FLQGGATGQFAAVPLNL----LGDK------------GTADYVVTGAWSAKAAKEA-KRYGGV 112 (355)
T ss_pred HHHHHhCCCCCceEE--EEcCCchHHHHHHHHhc----CCCC------------CeEEEEECCHHHHHHHHHH-HhcCCC
Confidence 444445432334677 6666 888877665553 1000 1234577777777664433 334788
Q ss_pred EEEecCCCCCCc-C-HHHHHHHHHhhhhcCCccE-EEEecCCccc---hhh-----hhcCC----------CCccEEEEc
Q psy852 530 LKILEPDDKNSL-R-GATLRQVMQQDETMGYIPF-FVSTTLGTTS---CYR-----KSQGI----------EYADSFNVN 588 (891)
Q Consensus 530 v~~Vp~d~~G~m-D-~~~Le~aI~~d~~~g~ip~-~VvataGTT~---c~~-----~ldGi----------~~aDSIs~d 588 (891)
++.++++++|.. + ++..+..+.++++ .+.+ ++.+..|+.. +.. .+|++ +..|-...+
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--lV~~~h~~t~tG~~~~~i~~~~g~~~~VDa~qs~g~~~idv~~~~~~~ss 190 (355)
T cd00611 113 VVIVAAKEEGKYTKIPDVETWDLAPDAA--YVHYCSNETIHGVEFDEVPDTGGVPLVADMSSNILSRPIDVSKFGVIYAG 190 (355)
T ss_pred cEEEecccccCCCCCCCHhhcCCCCCCC--EEEEeCCcccccEEcceecccCCCeEEEEccccccCCCCCHHHhCEEEee
Confidence 899998766544 5 3333333433211 1111 1112233332 222 24443 223534444
Q ss_pred CcccCCcccccEEEEEeCCcc--chhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh-hHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRYK--LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQKYIR 664 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~~--L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~-G~~~~i~ 664 (891)
+||+++ |.|.|++++|++.. +.+. .+.+..... ...... ..++=. ...+.+..+++.+-.+ |++++.+
T Consensus 191 ~~K~lG-P~G~g~l~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~--~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~ 262 (355)
T cd00611 191 AQKNLG-PAGVTVVIVRKDLLGKARKI---TPSMLNYKT--HADNNS--LYNTPPTFAIYMMGLVLKWLKEQGGVEAMEK 262 (355)
T ss_pred cccccC-CCceEEEEECHHHHhhcccC---CCCcccHHH--HHhcCC--CCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999775 99999999987632 1111 111111000 000000 011111 2246788899999888 7999999
Q ss_pred HHHHHHHHHHHHhccCCCcE-EeCC--Cce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe
Q psy852 665 RHCELAKLFEGKVRRDPRFE-ISND--VRL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 665 ~~~~lA~~L~~~L~~~~~~e-il~~--~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv 739 (891)
+..++++++.+.|+++|++. ...+ ... .+++|.+.+. .+...+...+.++|++ .+........+ +|+
T Consensus 263 ~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~~~r~G~~--~~~~~~~~g~vR~S~ 334 (355)
T cd00611 263 RNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKEAEAAGMI--GLKGHRSVGGIRASI 334 (355)
T ss_pred HHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHHHHHCCCc--ccCCCcccCeEEEEc
Confidence 99999999999999998863 2222 134 4699998653 2445666778889986 22222223467 999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei 758 (891)
++++|++|||+++++|+++
T Consensus 335 ~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 335 YNALSLEGVQALADFMKEF 353 (355)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999985
No 107
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.14 E-value=6.7e-10 Score=123.30 Aligned_cols=89 Identities=26% Similarity=0.344 Sum_probs=67.5
Q ss_pred EEEecCCCChHHHHH---HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhc-CCcceEEEeecccCcccc---ccCHHH
Q psy852 144 MAYCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCS---FDNLAE 216 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka---a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~Ga---vDpl~~ 216 (891)
.|+++..+|+++.++ +.+.|.+++.++.+. +.+|+++|++++++..+. ...+.+|+++..|+. |. .+++++
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~ 150 (338)
T cd06502 73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKA 150 (338)
T ss_pred eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHH
Confidence 477888999987653 345678999999865 889999999999753211 112456777666664 54 577889
Q ss_pred HHHHHHHcCCceeeeccc
Q psy852 217 IGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 217 I~~i~~~~~~~lHvDaA~ 234 (891)
|+++|+++|+++|+|+|+
T Consensus 151 i~~~~~~~~~~livDea~ 168 (338)
T cd06502 151 ISALAKENGLPLHLDGAR 168 (338)
T ss_pred HHHHHHHcCCeEeechHH
Confidence 999999999999999987
No 108
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.14 E-value=3.9e-10 Score=127.30 Aligned_cols=259 Identities=14% Similarity=0.020 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhc---CCCCCccccC---hhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy852 31 PSVLADMLSDAI---GCIGFSWAAS---PSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN 104 (891)
Q Consensus 31 ~~~~~~~l~~~~---n~~~~~~~~~---p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~ 104 (891)
++++..+..... |.....+..+ +.+.++-.++.+.+++++|.+.... -
T Consensus 12 ~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~-------v------------------- 65 (355)
T cd00611 12 EEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYK-------V------------------- 65 (355)
T ss_pred HHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCce-------E-------------------
Confidence 455555444332 5555556666 6778889999999999999854321 1
Q ss_pred CCCcccc-hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcc-cHHHH
Q psy852 105 QPQSLGG-GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSL-RGATL 182 (891)
Q Consensus 105 ~~~~~~g-Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~i-d~~~L 182 (891)
.+++| ||..-++...++... ..+...|+++...|.+..- +...+.+++.++++++|.. ++.++
T Consensus 66 --vf~~gs~T~a~~~~~~~l~~~------------~~~~~~i~~g~~~~~~~~~-a~~~g~~~~~~~~~~~g~~~~~~~~ 130 (355)
T cd00611 66 --LFLQGGATGQFAAVPLNLLGD------------KGTADYVVTGAWSAKAAKE-AKRYGGVVVIVAAKEEGKYTKIPDV 130 (355)
T ss_pred --EEEcCCchHHHHHHHHhcCCC------------CCeEEEEECCHHHHHHHHH-HHhcCCCcEEEecccccCCCCCCCH
Confidence 23445 665545545544211 0123456666666666433 3334678999998776544 53333
Q ss_pred H-HHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCc
Q psy852 183 R-QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSP 261 (891)
Q Consensus 183 ~-~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~ 261 (891)
+ ..+.++ +-+|++|+.+|.+|.+- . ++++.+|+.+.|||++.
T Consensus 131 ~~~~~~~~------~~lV~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa~qs-------------------------- 173 (355)
T cd00611 131 ETWDLAPD------AAYVHYCSNETIHGVEF--D---EVPDTGGVPLVADMSSN-------------------------- 173 (355)
T ss_pred hhcCCCCC------CCEEEEeCCcccccEEc--c---eecccCCCeEEEEcccc--------------------------
Confidence 2 333322 34899999999999982 2 34455888888888871
Q ss_pred ccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccc
Q psy852 262 IWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAY 341 (891)
Q Consensus 262 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 341 (891)
.++..+++.
T Consensus 174 -------~g~~~idv~---------------------------------------------------------------- 182 (355)
T cd00611 174 -------ILSRPIDVS---------------------------------------------------------------- 182 (355)
T ss_pred -------ccCCCCCHH----------------------------------------------------------------
Confidence 111111100
Q ss_pred cCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh
Q psy852 342 AGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 421 (891)
Q Consensus 342 ~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~ 421 (891)
..|-....+||+ ++|.|.|++++|++..-. .-...+.|.... .... .....++-..
T Consensus 183 ------------------~~~~~~ss~~K~-lGP~G~g~l~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~~Tpn~ 238 (355)
T cd00611 183 ------------------KFGVIYAGAQKN-LGPAGVTVVIVRKDLLGK-ARKITPSMLNYK--THAD--NNSLYNTPPT 238 (355)
T ss_pred ------------------HhCEEEeecccc-cCCCceEEEEECHHHHhh-cccCCCCcccHH--HHHh--cCCCCCCChH
Confidence 113233449996 579999999998753211 001112222110 0000 0011223233
Q ss_pred -hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcc
Q psy852 422 -RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRF 462 (891)
Q Consensus 422 -~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~ 462 (891)
...++..+++++-.+ |++++.+++.++++++.+.|.+.|++
T Consensus 239 ~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl 281 (355)
T cd00611 239 FAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF 281 (355)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 457889999999998 79999999999999999999999885
No 109
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.13 E-value=3.5e-09 Score=121.75 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHhcCCC--CC--c-c-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIGCI--GF--S-W-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~--~~--~-~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
..|.++..+.....+.. +. + + ...+....+|..+.+++++++|.+....
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i------------------------- 91 (416)
T PRK00011 37 VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANV------------------------- 91 (416)
T ss_pred CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceee-------------------------
Confidence 45677766655543221 11 1 1 1345677888889999999999865311
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHH---HHHH--cCCeEEEEecC-CCCc
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK---AAMM--AFVRLKILEPD-DKNS 176 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~k---aa~~--~~~~v~~V~~d-~~g~ 176 (891)
..++|+......+..+ -. +.-.|+++..+|.+... .... .+.+++.+++| +++.
T Consensus 92 -----~~~sgt~al~~~l~~l--~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 151 (416)
T PRK00011 92 -----QPHSGSQANAAVYFAL--LK-------------PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGL 151 (416)
T ss_pred -----ecCCchHHHHHHHHHh--cC-------------CCCEEEEeccccCCccccccccccccceeeEeecCcCcccCC
Confidence 1234553222212221 11 12237777777765432 1112 24577888887 4689
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
+|+++|++.+++.. |-+|+++ .+..|...|+++|+++|+++|+++++|+|+
T Consensus 152 ~d~~~l~~~i~~~~-----~k~v~~~--~~~~~~~~~~~~I~~la~~~~~~livD~a~ 202 (416)
T PRK00011 152 IDYDEVEKLALEHK-----PKLIIAG--ASAYSRPIDFKRFREIADEVGAYLMVDMAH 202 (416)
T ss_pred cCHHHHHHHHHhcC-----CCEEEEC--CCcCCCccCHHHHHHHHHHcCCEEEEECcc
Confidence 99999999997531 2344443 356788889999999999999999999987
No 110
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.11 E-value=4.1e-09 Score=117.67 Aligned_cols=82 Identities=9% Similarity=0.025 Sum_probs=69.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.++..++...|.+++.+++++ ++.+|+++|++.+++. +.+|+++ +.+|.+.|+++|.++|+
T Consensus 60 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~G~~~~~~~i~~l~~ 130 (352)
T cd00616 60 EVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPR------TKAIIPV---HLYGNPADMDAIMAIAK 130 (352)
T ss_pred EEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcC------CeEEEEE---CCCCCcCCHHHHHHHHH
Confidence 488899999999998877788999999987 7999999999988543 2355544 46899999999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|+++++|+|+
T Consensus 131 ~~~i~li~D~a~ 142 (352)
T cd00616 131 RHGLPVIEDAAQ 142 (352)
T ss_pred HcCCeEEEECCC
Confidence 999999999988
No 111
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.10 E-value=2.1e-08 Score=116.49 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=52.0
Q ss_pred CeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 164 VRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 164 ~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+++.-++| ++|.+|++++++.+.+.+ | .|+++.+++. +.+.|+++|+++|+++|+++.||+|+
T Consensus 193 ~~~~~y~vd~~~g~iD~d~l~~~~~~~~-----p-lvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH 257 (493)
T PRK13580 193 FHQRSYGVDPDTGLLDYDEIAALAREFK-----P-LILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAH 257 (493)
T ss_pred eeeEecccCcccCccCHHHHHHHHhhcC-----C-EEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECch
Confidence 355666677 569999999999998764 3 5666677777 55779999999999999999999998
No 112
>PLN02271 serine hydroxymethyltransferase
Probab=99.09 E-value=1e-08 Score=119.68 Aligned_cols=280 Identities=13% Similarity=0.089 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhcCCC-----CCcc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy852 30 YPSVLADMLSDAIGCI-----GFSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPA 103 (891)
Q Consensus 30 ~~~~~~~~l~~~~n~~-----~~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~ 103 (891)
-|+++..+-+.+.|-. +.-| ..+....++|..+.+...++||.+.... | .|+.
T Consensus 161 S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~-------g--------aNVQ------ 219 (586)
T PLN02271 161 CRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKW-------G--------VNVQ------ 219 (586)
T ss_pred CHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCccccc-------c--------ccee------
Confidence 3555555555554433 2233 3456678999999999999999885421 1 0111
Q ss_pred CCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecC---CCChHHH------HHHHHcCCeEEEEe--cC
Q psy852 104 NQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSK---EAHSCVE------KAAMMAFVRLKILE--PD 172 (891)
Q Consensus 104 ~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~---~~H~Sv~------kaa~~~~~~v~~V~--~d 172 (891)
..+|+..+.+....+ -+ +...|+... -.|.+-. +.+...+..+..++ +|
T Consensus 220 -----p~SGs~AN~aV~~AL--l~-------------PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d 279 (586)
T PLN02271 220 -----PYSCTSANFAVYTGL--LL-------------PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVN 279 (586)
T ss_pred -----eccHHHHHHHHHHHh--cC-------------CCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccc
Confidence 125654433333333 11 122344433 3455542 11122344445555 75
Q ss_pred -CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCC
Q psy852 173 -DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGK 251 (891)
Q Consensus 173 -~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~ 251 (891)
++|.+|.++|++.+... .|-+|++...+.. ..-|+++|+++|+++|+++++|+|+.-.++
T Consensus 280 ~~~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLI------------ 340 (586)
T PLN02271 280 PQTGYIDYDKLEEKALDF-----RPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLV------------ 340 (586)
T ss_pred cccCccCHHHHHHHhhhc-----CCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECccccccc------------
Confidence 67999999999865443 2667777554443 778899999999999999999998821110
Q ss_pred cccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccccccccc
Q psy852 252 TSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIF 331 (891)
Q Consensus 252 ~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (891)
T Consensus 341 -------------------------------------------------------------------------------- 340 (586)
T PLN02271 341 -------------------------------------------------------------------------------- 340 (586)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCC-------C
Q psy852 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG-------H 404 (891)
Q Consensus 332 ~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~-------~ 404 (891)
++..+. .-+.+||.++.+.|||+.+|.+ |++++|++.. ... .+...... .
T Consensus 341 ----------a~g~~~--------sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~--~g~~gs~s~~~~~~d~ 397 (586)
T PLN02271 341 ----------AAKECV--------NPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRK--QGMLLSHGDDNSHYDF 397 (586)
T ss_pred ----------ccCcCC--------CCCcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccc--cCCccccccccccHHH
Confidence 000000 1123589999999999999999 8888876432 111 11111111 0
Q ss_pred CCccccc-ccccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHH
Q psy852 405 EGAIDYR-HWGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIF 477 (891)
Q Consensus 405 ~~~~~~~-~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~ 477 (891)
...++.. -.+++++-... ..++-.+++..-...|.++.++.+++|+.|++.|.+ .||+|+. |+|+.-+
T Consensus 398 ~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~-~G~~vv~----ggTdnHl 467 (586)
T PLN02271 398 EEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLR-RKCRLVT----GGTDNHL 467 (586)
T ss_pred HHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-CCCeEee----CCCCcce
Confidence 1112211 12666666554 456778888888888899999999999999999977 4888884 6665433
No 113
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.6e-09 Score=119.28 Aligned_cols=264 Identities=15% Similarity=0.108 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc
Q psy852 435 LSGLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK 513 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~ 513 (891)
.......+...++-|| .+++.+++.+.-+|+ +|.|.|+++.....+....+ .+...|++|.
T Consensus 57 ~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIv--ft~~tT~aln~va~~l~~~~----------------~~gdeIv~s~ 118 (405)
T COG0520 57 AHTLAEEATDLYEAAREAVARFLNADSSDEIV--FTRGTTEALNLVARGLGRSL----------------KPGDEIVVSD 118 (405)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCCCCeEE--EeCChhHHHHHHHHHhhhhh----------------cCCCEEEEcc
Confidence 3345666777888888 667777776534777 78899999776655432211 1224699999
Q ss_pred cchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----h
Q psy852 514 EAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----K 575 (891)
Q Consensus 514 ~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ 575 (891)
.+|+|..-... -.|.+++.+|.+++|.+|.+++++.+++.++ .+ .-.|.+..|+.. |++ .
T Consensus 119 ~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tk--lvais~vSn~tG~~~pv~~I~~la~~~ga~v~ 196 (405)
T COG0520 119 LEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTK--LVALSHVSNVTGTVNPVKEIAELAHEHGALVL 196 (405)
T ss_pred CcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCce--EEEEECccccccccchHHHHHHHHHHcCCEEE
Confidence 99998877664 3488999999999999999999998877543 22 223445566665 444 2
Q ss_pred hcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC---------CCCccccCC
Q psy852 576 SQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH---------EGAIDYRHW 634 (891)
Q Consensus 576 ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~---------e~~~~~~~~ 634 (891)
+||. -.+|.+.+++||||++|.|+|+||+|++.. +.+ +++...+. ...+....+
T Consensus 197 VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l--~~l---~P~~~gg~~~~~~~~~~~~~~~~~p~ 271 (405)
T COG0520 197 VDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELL--EEL---EPFLGGGGMIEYVSRDEGVTLAELPL 271 (405)
T ss_pred EECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHH--hhc---CCcccCCCceeeecccccccccCcch
Confidence 5553 248999999999999999999999998732 111 11211111 011222223
Q ss_pred ccccccc--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC---ceeEEEEEecCCcchhhhhh
Q psy852 635 GIPLSRR--FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV---RLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 635 ti~~SRr--~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~---~~~iV~Fr~~~~~~~~~d~l 709 (891)
.++.+-+ ..++.+-.+++.+-..|+.++.++..++++++.+.|+++|++++++++ ..++++|.+.+. .
T Consensus 272 rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~ 344 (405)
T COG0520 272 RFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------H 344 (405)
T ss_pred hhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------C
Confidence 3333333 335677789999999999999999999999999999999999999875 589999999865 6
Q ss_pred HHHHHHHHHhCCcEEEeeccc
Q psy852 710 NRKLLEDINASGRLHMVPASQ 730 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~ 730 (891)
++.+...|.++|++...+..+
T Consensus 345 ~~dv~~~L~~~gI~vr~g~~c 365 (405)
T COG0520 345 PHDVATLLDEKGIAVRAGHHC 365 (405)
T ss_pred HHHHHHHHHhCCeEEEecccc
Confidence 789999999999765555443
No 114
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.07 E-value=1.6e-09 Score=121.33 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc
Q psy852 435 LSGLQKYIRRHCELAK-LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK 513 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr-~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~ 513 (891)
.-.++..+++.++.|| .+++.|...| -+|+ +|||+||+|+.++..+-.....+. .+-.|++|.
T Consensus 35 ~H~~G~~A~~~ve~AR~~iA~llga~~-~eIi--FTSG~TEsnNlaI~g~~~a~~~~~-------------~~~HIIts~ 98 (386)
T COG1104 35 LHSFGREARKAVEEAREQIAKLLGADP-EEII--FTSGATESNNLAIKGAALAYRNAQ-------------KGKHIITSA 98 (386)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhCCCC-CeEE--EecCCcHHHHHHHHhhHHhhhccc-------------CCCeEEEcc
Confidence 3477889999999999 8889998888 5888 899999999999987544333221 122599999
Q ss_pred cchHHHHHHHHHc---CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hh
Q psy852 514 EAHSCVEKAAMMA---FVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KS 576 (891)
Q Consensus 514 ~aH~Sv~Kaa~l~---gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~l 576 (891)
.+|.||...++.+ |.++.++|+|++|++|+++|+++|++++ .++ .++++++.|+.+ |++ |+
T Consensus 99 iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T--~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 99 IEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT--ILVSIMHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred cccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCc--eEEEEEecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 9999999999865 8899999999999999999999999874 344 788899999998 544 55
Q ss_pred cCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc--cCCCccccCCCCCccccCCcccccccc
Q psy852 577 QGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 577 dGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~--~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
|.+ -.+|.+|+|+||+.+ |+|+|++|+|+...+.+.+. +|+..+++++++++.+.+++..+
T Consensus 177 DAvQa~Gkipi~~~~~~vD~ls~SaHK~~G-pkGiGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~---- 251 (386)
T COG1104 177 DAVQAVGKIPIDLEELGVDLLSFSAHKFGG-PKGIGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAA---- 251 (386)
T ss_pred ehhhhcCceeccccccCcceEEeehhhccC-CCceEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHH----
Confidence 542 148999999999655 99999999998887777765 56777788777666544444333
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CCcEEeCCC---ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 643 RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-PRFEISNDV---RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 643 ~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~-~~~eil~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.+..+.+.....+...+.++|.+.|++. |++.+...+ -.++++|.|++. ..+.+...|+
T Consensus 252 ----------~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE~ll~~L~ 314 (386)
T COG1104 252 ----------EIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGESLLLALD 314 (386)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHHHHHHhcc
Confidence 4667778888889999999999999976 889887654 258999999866 6788999999
Q ss_pred hCCcEEEeeccccCC-------------------eEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPASQEQN-------------------DEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 719 ~~G~~~~s~s~~~g~-------------------~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
..|++.++++.|..+ ..+ ||++++||++|||++++.++++++
T Consensus 315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~ 376 (386)
T COG1104 315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIK 376 (386)
T ss_pred ccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 999999988866443 467 999999999999999999999984
No 115
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.06 E-value=2.6e-09 Score=117.38 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q psy852 26 SGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQ 105 (891)
Q Consensus 26 ~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~ 105 (891)
|++..|.++..|.....+. ..|...|.+.++|.. +++++|.+...
T Consensus 4 SD~~~~~m~~a~~~a~~gd--~~Yg~D~~~~~l~~~----i~~l~g~e~a~----------------------------- 48 (290)
T PF01212_consen 4 SDTPTPAMLEAMAAANVGD--DAYGEDPTTARLEER----IAELFGKEAAL----------------------------- 48 (290)
T ss_dssp -SSS-HHEEHHHHHTTSB---CCTTSSHHHHHHHHH----HHHHHTSSEEE-----------------------------
T ss_pred ccCCCHHHHHHHHccccCC--cccCCChhHHHHHHH----HHHHcCCCEEE-----------------------------
Confidence 4445667777774433333 357788999888875 56788887531
Q ss_pred CCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHH
Q psy852 106 PQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATL 182 (891)
Q Consensus 106 ~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L 182 (891)
|+.+||..+...+..+.+.. -.|++...+|..+...- .+.|.+++.|+.+++|.||+++|
T Consensus 49 --f~~sGT~An~~al~~~~~~~---------------~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l 111 (290)
T PF01212_consen 49 --FVPSGTMANQLALRAHLRPG---------------ESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDL 111 (290)
T ss_dssp --EESSHHHHHHHHHHHHHHTT---------------EEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHH
T ss_pred --EeCCCChHHHHHHHHHHhcC---------------CceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHH
Confidence 34578876655554444321 13888888998885432 45788999999888899999999
Q ss_pred HHHHHhhhhcCCcceEEEeecccCcc-ccc---cCHHHHHHHHHHcCCceeeeccc
Q psy852 183 RQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 183 ~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++.+.......-.|.+|+++--|+.. |.+ +.|++|.++|+++|+++|+|||.
T Consensus 112 ~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR 167 (290)
T PF01212_consen 112 EAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR 167 (290)
T ss_dssp HHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT
T ss_pred HHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh
Confidence 99998843322346788888877664 554 67778888999999999999997
No 116
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.06 E-value=3.1e-09 Score=121.33 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccc
Q psy852 60 TIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVL 139 (891)
Q Consensus 60 ~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~ 139 (891)
.+.-+..|+++|-+..+ |..+||+++|...+..+- .
T Consensus 69 ~eAe~~aA~~fGAd~t~-------------------------------flvnGsT~g~~a~i~a~~-~------------ 104 (417)
T PF01276_consen 69 KEAEELAARAFGADKTF-------------------------------FLVNGSTSGNQAMIMALC-R------------ 104 (417)
T ss_dssp HHHHHHHHHHHTESEEE-------------------------------EESSHHHHHHHHHHHHHT-T------------
T ss_pred HHHHHHHHHhcCCCeEE-------------------------------EEecCchHHHHHHHHHhc-C------------
Confidence 44456789999998764 234677666655443221 1
Q ss_pred cCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-----CCcccH-----HHHHHHHHhhhhcCCcceEEEeecccCccc
Q psy852 140 LSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-----KNSLRG-----ATLRQVMQQDETMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 140 ~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-----~g~id~-----~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G 209 (891)
+.-.|++...+|-||..++.+.+...++|++.. -+.+++ +.++++|++....+. |.+|++|.- |--|
T Consensus 105 -~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~P-TY~G 181 (417)
T PF01276_consen 105 -PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSP-TYYG 181 (417)
T ss_dssp -TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS--TTS
T ss_pred -CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCC-CCCe
Confidence 223499999999999999999999999988742 235677 999999987643222 456777766 6779
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCcccc
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFIC 241 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~ 241 (891)
.+-|+++|+++|+++++.|+||-|||+.+.|+
T Consensus 182 v~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 213 (417)
T PF01276_consen 182 VCYDIKEIAEICHKHGIPLLVDEAHGAHFGFH 213 (417)
T ss_dssp EEE-HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred EEECHHHHHHHhcccCCEEEEEccccccccCC
Confidence 99999999999999999999999999988764
No 117
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.06 E-value=2.3e-09 Score=105.63 Aligned_cols=89 Identities=26% Similarity=0.177 Sum_probs=70.6
Q ss_pred EEecCCCChHHH-HHHHHcCCeEEEEecCCCCcccHH--HHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 145 AYCSKEAHSCVE-KAAMMAFVRLKILEPDDKNSLRGA--TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~-kaa~~~~~~v~~V~~d~~g~id~~--~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
|+++..+|++.. ..+...+.+++.++.+.++..+.+ .+++.. .+..|.+++++..++.+|..+|+++|+++|
T Consensus 44 v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~ 118 (170)
T cd01494 44 VIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPLKEIRKIA 118 (170)
T ss_pred EEEeecccceehhhHHHhcCCEEEEeccCCCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCHHHHHHHH
Confidence 788888898888 666777889999998876654443 443322 234478999999999999999999999999
Q ss_pred HHcCCceeeeccccCCc
Q psy852 222 KEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~~ 238 (891)
+++++++|+|+|++++.
T Consensus 119 ~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 119 KEYGILLLVDAASAGGA 135 (170)
T ss_pred HHcCCEEEEeccccccc
Confidence 99999999999996544
No 118
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.05 E-value=1.3e-08 Score=116.40 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=97.9
Q ss_pred ccccCCCCC-CHHHHHHHHHHHhcC-----CCCCcc-ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q psy852 20 FHAYFPSGN-SYPSVLADMLSDAIG-----CIGFSW-AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDI 92 (891)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~l~~~~n-----~~~~~~-~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~ 92 (891)
++..+++.+ ..|.+...+...+.. ..+..+ ...+...++|..+.+++++++|.+....
T Consensus 21 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v--------------- 85 (402)
T cd00378 21 TLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANV--------------- 85 (402)
T ss_pred CeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceee---------------
Confidence 555555444 456666666554321 222222 2455667888889999999999874311
Q ss_pred cccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHH-----HHHcCCeEE
Q psy852 93 DMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-----AMMAFVRLK 167 (891)
Q Consensus 93 ~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~ka-----a~~~~~~v~ 167 (891)
..++|+......+..+ .. +...|+++..+|.+.... +...|.++.
T Consensus 86 ---------------~~~sgt~a~~~~l~~l--~~-------------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (402)
T cd00378 86 ---------------QPHSGSQANLAVYFAL--LE-------------PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFE 135 (402)
T ss_pred ---------------ecCCcHHHHHHHHHHh--cC-------------CCCEEEEecCccCccccccccccccccceeEE
Confidence 1234553222222222 11 112366666666544222 333455666
Q ss_pred EEecCC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 168 ILEPDD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 168 ~V~~d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.++++. ++.+|+++|++.+.+.. |-+|+.+. +.+|...|+++|+++|+++|+++++|+++
T Consensus 136 ~~~~~~~~~~~~id~~~l~~~i~~~~-----~~~v~~~~--~~~~~~~~~~~I~~l~~~~~~~li~D~a~ 198 (402)
T cd00378 136 SVPYGVDPETGLIDYDALEKMALEFK-----PKLIVAGA--SAYPRPIDFKRFREIADEVGAYLLVDMAH 198 (402)
T ss_pred EecCCcCcccCCcCHHHHHHHHHhCC-----CCEEEecC--cccCCCcCHHHHHHHHHhcCCEEEEEccc
Confidence 666542 68999999999986432 23444433 34578889999999999999999999986
No 119
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.03 E-value=7.5e-08 Score=109.35 Aligned_cols=256 Identities=14% Similarity=0.074 Sum_probs=154.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~ 545 (891)
+++|++++|..++.+... +.-.|+++...|++...++.+.|++++.+|.+ .++.+|+++
T Consensus 71 i~~g~~~a~~~~~~~l~~-------------------~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 131 (370)
T TIGR02539 71 VTHGAREGKFAVMHALCK-------------------EGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEG 131 (370)
T ss_pred EECChHHHHHHHHHHhhC-------------------CCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHH
Confidence 357889998776655311 12257888999999998888899999999986 468999999
Q ss_pred HHHHHHhhhhc---CCccEEEEec---CCccc--------hhh----------hhcCC-------CCccEEEEcCcccCC
Q psy852 546 LRQVMQQDETM---GYIPFFVSTT---LGTTS--------CYR----------KSQGI-------EYADSFNVNVNKWLL 594 (891)
Q Consensus 546 Le~aI~~d~~~---g~ip~~Vvat---aGTT~--------c~~----------~ldGi-------~~aDSIs~d~HK~L~ 594 (891)
|+++|++.... +...++++.. .|+.. |++ |..|. ..+|.+..++|||++
T Consensus 132 l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~ 211 (370)
T TIGR02539 132 YGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMA 211 (370)
T ss_pred HHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCccccc
Confidence 99999753221 1112232222 34332 332 11221 247999999999999
Q ss_pred cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc-ccc-ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI-PLS-RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti-~~S-Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~ 672 (891)
.+.++|+++.+++ .+ +.+.....|.. +..... ..+ ....+..++.++... ...-+..++..+++++
T Consensus 212 ~~g~~G~l~~~~~-~i-~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~al~~~--~~~l~~~~~~~~~~~~ 279 (370)
T TIGR02539 212 ASGPCGVLGMSEE-WE-DIVLRKSRYSP--------VKEVELLGCTSRGAPIVTMMASFPHV--VERVKRWDEEVKKTRW 279 (370)
T ss_pred CCCCEEEEEECHH-HH-hhhcccccCCc--------cceeeeecccccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 7777898887644 22 22222111111 000000 011 111233344444321 2222334555677889
Q ss_pred HHHHhccCCCcEEe--CCCceeEEEEEecCCcc--hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHH
Q psy852 673 FEGKVRRDPRFEIS--NDVRLGLVCFRLRSENN--LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDD 747 (891)
Q Consensus 673 L~~~L~~~~~~eil--~~~~~~iV~Fr~~~~~~--~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ed 747 (891)
|.+.|++. +++++ .+...++|.|+++.... ..-+.....+.+.|.++|++.+.+ .....+ ++++ ..|++|
T Consensus 280 l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---~~~~~iRis~~-~~t~e~ 354 (370)
T TIGR02539 280 FVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---GQTKYFKLSVY-GLTKEQ 354 (370)
T ss_pred HHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC---CcceEEEEEec-CCCHHH
Confidence 99999987 68874 35678899998743210 000223457889999999862222 123356 8874 459999
Q ss_pred HHHHHHHHHHHH
Q psy852 748 LAYKRSFFVRML 759 (891)
Q Consensus 748 Id~li~~L~ei~ 759 (891)
+++++++|+++.
T Consensus 355 i~~l~~~L~~~~ 366 (370)
T TIGR02539 355 VEYVVDSFEEIV 366 (370)
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 120
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.02 E-value=2.1e-08 Score=113.70 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred EEecCCCChHHH-----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 145 AYCSKEAHSCVE-----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~-----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
|+++. .|+... .++.+.|.+++.+++ ++.+|+++|+++|.+.++ +++.++.-.+.+|.+.|+++|++
T Consensus 102 Vi~~~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~-----ai~~v~~~~~~~g~~~~~~~i~~ 173 (363)
T TIGR01437 102 VVLPK-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTA-----AILYIKSHHCVQKSMLSVEDAAQ 173 (363)
T ss_pred EEEEC-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhce-----EEEEEecCCCCcCCcCCHHHHHH
Confidence 44543 666543 344667888888876 467999999999987652 34445555668899999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++|+|+|++
T Consensus 174 ~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 174 VAQEHNLPLIVDAAAE 189 (363)
T ss_pred HHHHcCCeEEEECCCC
Confidence 9999999999999993
No 121
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.02 E-value=2.1e-09 Score=118.23 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred HHHHHhcCCC---CCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccch
Q psy852 36 DMLSDAIGCI---GFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGG 112 (891)
Q Consensus 36 ~~l~~~~n~~---~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gG 112 (891)
.|+..+.+.| -..|...|.+..+|. .+++++|. .. .+ |+.+|
T Consensus 15 ~m~eam~~a~~~~~~~YG~D~~~~~~e~----~~ae~~g~-~a---------~~---------------------Fv~sG 59 (342)
T COG2008 15 EMREALAAANAVGDDVYGEDPTTNALEQ----RIAELFGK-EA---------AL---------------------FVPSG 59 (342)
T ss_pred HHHHHHHhccccCCCCCCCCHHHHHHHH----HHHHHhCC-ce---------EE---------------------EecCc
Confidence 4444444444 334566788888876 66778887 32 12 34578
Q ss_pred hHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHHHHHHHhh
Q psy852 113 VIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATLRQVMQQD 189 (891)
Q Consensus 113 t~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L~~~l~~~ 189 (891)
|..|...+....+. .--|+|-+.+|......- .++++..+.+....+|.|++++++..|..+
T Consensus 60 T~aN~lal~~~~~~---------------~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~ 124 (342)
T COG2008 60 TQANQLALAAHCQP---------------GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPD 124 (342)
T ss_pred cHHHHHHHHHhcCC---------------CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCC
Confidence 75544444333321 113888899998886643 234455555555689999999999998863
Q ss_pred -hhcCCcceEEEeecccCccccccCHH---HHHHHHHHcCCceeeeccc
Q psy852 190 -ETMGYIPFFVSTTLGTTSCCSFDNLA---EIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 190 -~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~~i~~~~~~~lHvDaA~ 234 (891)
.-.-..|.++..|.-| +.|++-|++ +|.++|+++|++||+|||-
T Consensus 125 d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR 172 (342)
T COG2008 125 DIHHAPTPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGLPLHMDGAR 172 (342)
T ss_pred CcccCCCceEEEeeccC-CCceecCHHHHHHHHHHHHHhCCceeechHH
Confidence 1223447788888887 899996665 5667899999999999997
No 122
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.00 E-value=2.9e-08 Score=110.78 Aligned_cols=248 Identities=20% Similarity=0.210 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCcc
Q psy852 55 CTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFV 134 (891)
Q Consensus 55 ~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~ 134 (891)
..+|-.+.-+||+++-|++.-.+. | .+|. ++-++++.+.|..-..
T Consensus 107 ~l~li~~Lq~~L~~ITG~DavsLQ----------P-------------------~AGA--qGE~aGll~Ir~YHe~---- 151 (496)
T COG1003 107 YLELIYELQEWLKEITGMDAVSLQ----------P-------------------NAGA--QGEYAGLLAIRAYHES---- 151 (496)
T ss_pred HHHHHHHHHHHHHHhcCCceeecc----------C-------------------CCCc--chhhHHHHHHHHHHHH----
Confidence 456777888999999999875432 1 1121 3344444444443100
Q ss_pred ccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cC
Q psy852 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DN 213 (891)
Q Consensus 135 ~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dp 213 (891)
.|. ..+-++++.+.+|-...-+|.++|.+|+.|++|++|.+|+++|++++.+.+ ..+.+|.-|| .|.+ .+
T Consensus 152 -rG~-~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~------AalMiTnPsT-~GvFE~~ 222 (496)
T COG1003 152 -RGE-GHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNL------AALMITNPST-LGVFEED 222 (496)
T ss_pred -cCC-CcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccce------eEEEeccCcc-cccchhh
Confidence 011 145678999999999999999999999999999999999999999998654 6888888876 5776 78
Q ss_pred HHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccC
Q psy852 214 LAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIH 293 (891)
Q Consensus 214 l~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (891)
|.+|++|.+++|..|-.|||- +|+. .|
T Consensus 223 I~ei~~ivH~~Gg~vY~DGAN------------------------lNA~----------------vG------------- 249 (496)
T COG1003 223 IREICEIVHEAGGQVYYDGAN------------------------LNAI----------------VG------------- 249 (496)
T ss_pred HHHHHHHHHHcCCEEEecCcc------------------------hhhh----------------hc-------------
Confidence 999999999999888888876 1221 00
Q ss_pred CccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCC
Q psy852 294 PFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLL 373 (891)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~ 373 (891)
..-.|--.+|-+-+|.||.+-
T Consensus 250 -----------------------------------------------------------~~rPGd~G~DV~HlNLHKTF~ 270 (496)
T COG1003 250 -----------------------------------------------------------LARPGDMGFDVVHLNLHKTFC 270 (496)
T ss_pred -----------------------------------------------------------cccccccccceEEeecccccc
Confidence 001122357999999999987
Q ss_pred ccCC-----ceEEEEeccccchhhcccCccccCCCCCC---cccccccccCCCCC----hhH-HHHHHHHHHhcHHHHHH
Q psy852 374 TAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEG---AIDYRHWGIPLSRR----FRS-LKLWFVIRTYGLSGLQK 440 (891)
Q Consensus 374 ~p~~-----~g~~~~r~~~~~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~sr~----~~~-l~~w~~l~~~g~~G~~~ 440 (891)
+|-+ .|=+.++.. |...+.. |. ..+.... ..+.. .++.-++. +.. +..|+.++.+|.+|+++
T Consensus 271 iPHGGGGPG~GPvgVk~~--L~pfLP~-p~-~~~~~~~y~~~~~~~-~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ 345 (496)
T COG1003 271 IPHGGGGPGAGPVGVKAH--LAPFLPG-PV-VYHDVGEYRLDYDGK-KSIGVSAAPYGSASILPIAWAYIRMMGADGLKQ 345 (496)
T ss_pred cCCCCCCCCCCceehHhh--ccccCCC-Cc-ccCCCccccccCCCC-ccceeeccccCcchHHHHHHHHHHHHhHHHHHH
Confidence 7765 445666632 3322211 11 1111100 01111 22222332 233 47899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCccccc
Q psy852 441 YIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 441 ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
.-+..+=+|+|++++|+. .+++.
T Consensus 346 ase~AvLNANYia~rL~~--~y~~~ 368 (496)
T COG1003 346 ASEVAVLNANYIARRLKG--YYPVP 368 (496)
T ss_pred HHHHHHHhHHHHHHHhhh--cCccc
Confidence 999999999999999985 45554
No 123
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.99 E-value=4.5e-08 Score=111.46 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=70.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.|+..++.+.+.+.+.++ .+|+++|++.+.+..+.+..+.+|+.....+.+|.+.|+++|+++|++
T Consensus 124 ~vi~~~~~~~s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~ 198 (393)
T TIGR01822 124 AIISDALNHASIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADK 198 (393)
T ss_pred EEEEeccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHH
Confidence 488889999999988876555544332 489999999998754333346788888788999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+|+
T Consensus 199 ~~~~li~De~~~ 210 (393)
T TIGR01822 199 YDALVMVDECHA 210 (393)
T ss_pred cCCEEEEECCcc
Confidence 999999999983
No 124
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.97 E-value=6.2e-08 Score=107.97 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|+++..++...+.+++.++ .+|++.+++.+++.. ....+.+|+++..++.+|.+.|+++|+++|++
T Consensus 87 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~ 160 (349)
T cd06454 87 LIISDSLNHASIIDGIRLSGAKKRIFK-----HNDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKK 160 (349)
T ss_pred EEEEehhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHH
Confidence 377788899999888877677777775 358889998887642 12346788888888999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|++++
T Consensus 161 ~~~~livD~a~~ 172 (349)
T cd06454 161 YGAILFVDEAHS 172 (349)
T ss_pred cCCEEEEEcccc
Confidence 999999999994
No 125
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.94 E-value=7e-08 Score=111.96 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=66.1
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ + -.|.+++.++++ |+++|++.|++.+ .+|++...++.+|.+.|+++|++
T Consensus 105 ~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~~T------klV~~e~~~np~g~v~Di~~I~~ 173 (433)
T PRK08134 105 HIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRPNT------RLLFGETLGNPGLEVLDIPTVAA 173 (433)
T ss_pred EEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCcccCcccCHHHHHH
Confidence 3888889998776655 2 256788888875 8999999997654 46777778899999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|+||
T Consensus 174 la~~~gi~livD~t~ 188 (433)
T PRK08134 174 IAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
No 126
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.94 E-value=6.8e-07 Score=102.75 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=67.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
+|++....|.|+..++...+.+++.++. .|+++|++.++... +..+.+|++...++.+|.+.|+++|.++|++
T Consensus 133 ~I~~~~~~H~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~ 205 (406)
T PRK13393 133 VILSDELNHASMIEGIRHSRAEKRIFRH-----NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAPIAEICDVAEK 205 (406)
T ss_pred EEEEccchhHHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhCHHHHHHHHHH
Confidence 4777788999999988776667766663 37888888776431 1235688888899999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+++++++|.|++
T Consensus 206 ~~~~livDea~~ 217 (406)
T PRK13393 206 HGAMTYLDEVHA 217 (406)
T ss_pred cCCEEEEECCcc
Confidence 988888888874
No 127
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.92 E-value=2.1e-07 Score=105.61 Aligned_cols=273 Identities=9% Similarity=0.001 Sum_probs=148.5
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH-----HHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV-----EKA 522 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv-----~Ka 522 (891)
..+++++.+.. + .++ +++|+|++++.++.+.-. +..+..-+..... ....-.|+++. .|+.. ..+
T Consensus 50 ~~~~~a~~~g~-~--~~~--~~~g~t~al~~al~al~~---~Gd~~~~~~~~~s-~~~~~eVi~~~-~~~~~~~~~~~~~ 119 (363)
T TIGR01437 50 TGEYIANLLGV-E--DAV--IVSSASAGIAQSVAAVIT---RGNRYLVENLHDS-KIEVNEVVLPK-GHNVDYGAPVETM 119 (363)
T ss_pred HHHHHHHhhCC-C--eEE--EEcCHHHHHHHHHHHHhc---CCCcchhhccccc-ccccceEEEEC-ccchhcCCchHHH
Confidence 44455555543 2 334 688999999998877521 0000000000000 01111344544 56543 344
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcCCC------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQGIE------ 580 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldGi~------ 580 (891)
+.+.|.+++.++. ++.+|+++|+++|.+.++ ..++|+. ..|+.. |+++ +|+..
T Consensus 120 ~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~---ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~~ 194 (363)
T TIGR01437 120 VRLGGGKVVEAGY--ANECSAEQLEAAITEKTA---AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQK 194 (363)
T ss_pred HHhcCCeEEEEcC--CCCCCHHHHHHhcChhce---EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchHH
Confidence 4678888888876 457999999999987643 2222322 134332 4432 33321
Q ss_pred ----CccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH
Q psy852 581 ----YADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL 656 (891)
Q Consensus 581 ----~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~ 656 (891)
++|.+.+|+|||+.+|. .|+++.+ ++.+.. ... + ..+. ...++.+. ...+.+..++..+-.
T Consensus 195 ~~~~g~D~~~~S~~K~l~gp~-~G~l~~~-~~~i~~-~~~---~-~~~~-------~~~~~~~~-~~~~gl~aAl~~~~~ 259 (363)
T TIGR01437 195 YYRLGADLVIYSGAKAIEGPT-SGLVLGK-KKYIEW-VKL---Q-SKGI-------GRAMKVGK-ENILGLTAALEQYLS 259 (363)
T ss_pred HHHcCCCEEEEeCCcccCCCc-eEEEEEc-HHHHHH-HHh---c-cCCC-------cceeccCH-HHHHHHHHHHHHHHc
Confidence 37999999999999998 7876654 333322 110 0 0000 00000000 112455556665543
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc-EEEeec
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-------RLGLVCFRLRSENNLIADQNNRKLLEDINASGR-LHMVPA 728 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~-~~~s~s 728 (891)
.+. +.++...+.++++.++|+++++++++.++ ....|.|..... +....++.+.|.+.|. ++....
T Consensus 260 ~~~-~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~-----g~~~~~l~~~L~~~~~~I~~r~~ 333 (363)
T TIGR01437 260 TGK-ESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESEL-----GMTAADVVQALRQGEPAIYTRGY 333 (363)
T ss_pred cCc-ccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCC-----CCCHHHHHHHHhcCCCCEEEeee
Confidence 332 33334445677899999999999887432 124566665322 2346788999987774 222221
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
......+ +.+.. ++++|+|.++++|+++
T Consensus 334 -~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 334 -KANEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred -eecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 1122233 55543 5699999999999875
No 128
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=98.90 E-value=1.1e-06 Score=100.78 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=66.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
+|++....|.|+..++...+..+..++. .|+++|++.++... ...+.+|++...++.+|.+-|+++|.++|++
T Consensus 133 ~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~ 205 (402)
T TIGR01821 133 VIFSDELNHASMIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAPIEEICDLADK 205 (402)
T ss_pred EEEEcchHhHHHHHHHHHcCCeEEEECC-----CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccCHHHHHHHHHH
Confidence 4666667899998888766666655543 37788888886431 1135688888899999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.|++
T Consensus 206 ~~~~livDea~~ 217 (402)
T TIGR01821 206 YGALTYLDEVHA 217 (402)
T ss_pred cCCEEEEeCccc
Confidence 998888888884
No 129
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.89 E-value=7.9e-08 Score=111.60 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=63.7
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ ...|.++++++ +.. |+++|+++|++.+ -+|++..-+|.+|.+.||++|++
T Consensus 110 ~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~t------k~V~~e~~~Np~~~v~di~~I~~ 179 (437)
T PRK05613 110 HIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPNT------KAFFGETFANPQADVLDIPAVAE 179 (437)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCccC------eEEEEECCCCCCCcccCHHHHHH
Confidence 4888899999885433 23567888887 332 8999999887653 24555566677889999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+.++||+|++
T Consensus 180 la~~~gi~livD~t~a 195 (437)
T PRK05613 180 VAHRNQVPLIVDNTIA 195 (437)
T ss_pred HHHHcCCeEEEECCCc
Confidence 9999999999999984
No 130
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=98.89 E-value=2.8e-08 Score=112.67 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=146.4
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCcCHHHHHH-HHHhhhhcCCccEEEE--ecCCccc--hhh-----
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQ-VMQQDETMGYIPFFVS--TTLGTTS--CYR----- 574 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le~-aI~~d~~~g~ip~~Vv--ataGTT~--c~~----- 574 (891)
-.+|..+...|-+.+-+-+++ .. ..++.+. .|..+..++++ +|+++. ....++- ++.|... -.+
T Consensus 94 ~l~i~~G~fg~r~~~~a~~~g-~~-~~~~~~~~~g~~~~~~~~~~~l~~~~---~~V~~th~eTstGv~~~~i~~i~g~l 168 (360)
T PRK05355 94 ADYVDTGSWSKKAIKEAKKYG-EV-NVAASSEDDGFTYIPPLDEWQLSDDA---AYVHYTSNETIDGTEFHELPDTGDVP 168 (360)
T ss_pred EEEEECCHHHHHHHHHHHHhC-Cc-eEEecccccCCCCCCChhhccCCCCC---CEEEEccCCCcceEecCcccccCCCc
Confidence 456788888888866555665 33 5566554 67777767666 665432 1122221 1223332 000
Q ss_pred -hhcCC----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccccc-
Q psy852 575 -KSQGI----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR- 641 (891)
Q Consensus 575 -~ldGi----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr- 641 (891)
.+|++ +..|.+.+++||+++ |-|.|+++++++.. .. +.. ...|+.-..... .....++=.
T Consensus 169 ~vVDavss~g~~~idv~~~d~~~~ssqK~lg-P~Glg~l~~s~~~l-~~-~~~~~~~~~~~~~~~~----~~~~~~Tp~~ 241 (360)
T PRK05355 169 LVADMSSDILSRPIDVSKFGLIYAGAQKNIG-PAGLTIVIVREDLL-GR-ALPSIPSMLDYKTHAD----NDSMYNTPPT 241 (360)
T ss_pred EEEEcCccccCccCCHHHccEEEEecccccc-CCceEEEEECHHHH-hh-cccCCChHHHHHHHHh----cCCccCCCcH
Confidence 13332 335899999999986 99999999998742 11 111 112222110000 000011111
Q ss_pred ccchHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--Cce-eEEEEEecCCcchhhhhhHHHHHHHH
Q psy852 642 FRSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRL-GLVCFRLRSENNLIADQNNRKLLEDI 717 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L 717 (891)
.....+-.+|+.+-.+ |++++.++..++++++.+.|++++.+..+.+ ..+ .+++|++++. .+...+...+
T Consensus 242 ~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~ 315 (360)
T PRK05355 242 FAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAEA 315 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHHH
Confidence 2235677888888888 8999999999999999999999874444333 234 5799998642 2335666788
Q ss_pred HhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 718 NASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 718 ~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.++|+....+. ...+.+ +|+.+++|.+|||+++++|+++.
T Consensus 316 ~~~Gi~~~~~~--~~~g~vRiS~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 316 KAAGLVGLKGH--RSVGGMRASIYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred HHCCCcccCCC--CccCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 88998842222 223456 99999999999999999999865
No 131
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=98.88 E-value=1.5e-07 Score=108.28 Aligned_cols=158 Identities=10% Similarity=0.084 Sum_probs=96.5
Q ss_pred ccccCCCCCCHHHHHHH-HHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccc
Q psy852 20 FHAYFPSGNSYPSVLAD-MLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIED 98 (891)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~ 98 (891)
|.+...-..+ +++-.. |..+..+- .+|..+|...++|..+ ++++|.+.-
T Consensus 40 ~iDLltDsgT-~aMs~~q~a~~~~GD--e~yag~~s~~~lE~~v----a~~~G~~~a----------------------- 89 (450)
T TIGR02618 40 YIDLLTDSGT-NAMSDKQWAGLMMGD--EAYAGSRNFYHLERTV----RELYGFKYV----------------------- 89 (450)
T ss_pred EEEcccCCCc-HHHHHHHHHHhhhcc--hhhcCCCcHHHHHHHH----HHHHCCCeE-----------------------
Confidence 4454433333 444333 44444443 3588899999999865 456677642
Q ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHH-HHcCCeEEEEecC-----
Q psy852 99 YMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPD----- 172 (891)
Q Consensus 99 ~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa-~~~~~~v~~V~~d----- 172 (891)
..+++|+..-++ + .+.. ++. .+ .| +...|++...+. ...|...+-|++|
T Consensus 90 --------v~v~sGT~Al~l--l--~~l~------l~p----GD-eV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~ 144 (450)
T TIGR02618 90 --------VPTHQGRGAENL--L--SQIA------IKP----GD-YV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDA 144 (450)
T ss_pred --------EEcCCHHHHHHH--H--HHhC------CCC----cC-EE--CCceeHHHHHHHHHhCCeEEEeeeccccccc
Confidence 135677643232 1 1111 011 11 23 557888887774 5556555555433
Q ss_pred -----CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccc---cCHHHHHHHHHHcCCceeeeccc
Q psy852 173 -----DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 173 -----~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+|.||+++|++.|++.. ..+.+ +|+++..++.. |.. .++.+|.++|++||++||.|||.
T Consensus 145 ~~~~p~~GniD~~~Le~aI~~~~-~~~~~-lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 145 QLNIPFKGNVDLKKLQKLIDEVG-ADKIP-YICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred ccCCCCCCCcCHHHHHHHhcccc-CcccC-ceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 369999999999998532 12334 44444444544 666 78999999999999999999998
No 132
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=98.88 E-value=8.4e-08 Score=108.38 Aligned_cols=279 Identities=10% Similarity=0.031 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccccccCCC-CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccch
Q psy852 438 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAH 516 (891)
Q Consensus 438 ~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it-sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH 516 (891)
|.++.+...+..+++.+ .-+..+++ ++ ++||+++-.++...-. .. ..-.++..+..+|
T Consensus 35 f~~~~~~~~~~l~~l~~---~~~~~~v~--~~~gsgT~a~ea~~~nl~~----~~------------~~~l~i~~G~fg~ 93 (349)
T TIGR01364 35 FEAVANEAESDLRELLN---IPDNYEVL--FLQGGATGQFAAVPLNLLA----EG------------KVADYIVTGAWSK 93 (349)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCceEE--EEcCCchHHHHHHHHhcCC----CC------------CeEEEEECCHHHH
Confidence 44555555555555444 22234565 44 4488776655443211 00 1235677888888
Q ss_pred HHHHHHHHHcCceEEEecCCCCC----CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc---hhh-----hhcCC--
Q psy852 517 SCVEKAAMMAFVRLKILEPDDKN----SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS---CYR-----KSQGI-- 579 (891)
Q Consensus 517 ~Sv~Kaa~l~gv~v~~Vp~d~~G----~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~---c~~-----~ldGi-- 579 (891)
-..+-+-+++. +..++.++.+ ..|++.++ ++. ....++++ .+.|... +.. .+|++
T Consensus 94 r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~v~~th~ETstGv~~~~l~~~~~~l~iVDavss 165 (349)
T TIGR01364 94 KAAKEAKKYGV--VNVVASGKEGNYTKIPDPSTWE--ISE----DAAYVHYCANETIHGVEFRELPDVKNAPLVADMSSN 165 (349)
T ss_pred HHHHHHHHhCC--cEEEeccccCCCCCCCCHHhcC--CCC----CCCEEEEcCCCCcccEecceecccCCCeEEEEcccc
Confidence 88655555544 6666654333 35555544 111 11122222 1223331 211 24442
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHH
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFV 650 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~ 650 (891)
+..|.+.+++||+++ |-|.|+++++++.. ...-...+.|..-.. ........++=. .....+..+
T Consensus 166 ~g~~~id~~~~d~~~~ssqK~lg-P~Glg~l~~s~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~Tp~~~~i~al~~a 239 (349)
T TIGR01364 166 ILSRPIDVSKFGLIYAGAQKNIG-PAGLTVVIVRKDLL-GRASRITPSMLNYKI----HAENDSMYNTPPTFAIYVSGLV 239 (349)
T ss_pred ccCccCCHHHccEEEEecccccC-CCceEEEEECHHHH-hhcccCCCCcchHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 335899999999986 99999999998732 111011112211000 000000011111 223567788
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CC--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE
Q psy852 651 IRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISN-DV--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHM 725 (891)
Q Consensus 651 L~~lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~ 725 (891)
|+.+-.+ |++++.++..++++++.+.|++.+++.... ++ .+ .+++|.+++. .+..++...+.++|++..
T Consensus 240 l~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~~~~~Gi~~~ 313 (349)
T TIGR01364 240 FKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE------ELEKRFLKEAEERGLVSL 313 (349)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh------hHhHHHHHHHHHCCCccc
Confidence 8888888 799999999999999999999998876553 22 33 5789998643 233566678888998422
Q ss_pred eeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 VPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.. ....+ +|+.+++|.+|||+++++|+++.
T Consensus 314 ~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 314 KGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred CCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHH
Confidence 2222 12356 99999999999999999999865
No 133
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.86 E-value=2.3e-08 Score=112.59 Aligned_cols=268 Identities=18% Similarity=0.190 Sum_probs=196.0
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+...+. .++ +++|++++|..++.+++.... .++..|+++..+|+++.+++...
T Consensus 63 ~~~~~la~~~g~~~~-~~~--~~~ggt~a~~~a~~~~~~~~~---------------~~~~~vl~~~~~h~s~~~~~~~~ 124 (371)
T PRK13520 63 EAVEMLGELLHLPDA-YGY--ITSGGTEANIQAVRAARNLAK---------------AEKPNIVVPESAHFSFDKAADML 124 (371)
T ss_pred HHHHHHHHHhCCCCC-CeE--EecCcHHHHHHHHHHHHhhcc---------------CCCceEEecCcchHHHHHHHHHc
Confidence 555666766654332 333 578999999999888765311 02346899999999999999888
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hhh-----hhcC----------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CYR-----KSQG---------- 578 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~~-----~ldG---------- 578 (891)
|++++.||++.++.+|+++|+++|++++ ..|+. ..|+.. |++ ++|+
T Consensus 125 g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~ 198 (371)
T PRK13520 125 GVELRRAPLDDDYRVDVKAVEDLIDDNT------IGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFL 198 (371)
T ss_pred CceEEEecCCCCCcCCHHHHHHHHhhCC------EEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhh
Confidence 9999999999999999999999998642 22222 234433 433 1222
Q ss_pred ---------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHH
Q psy852 579 ---------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLW 648 (891)
Q Consensus 579 ---------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW 648 (891)
...+|++++++|||+++|.++|++++++++.+. .+.....|+.... .+...++|+ ...+.+|
T Consensus 199 ~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~-------~~~~~gt~~~~~~~~~~ 270 (371)
T PRK13520 199 DDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLD-ALAVDTPYLTSKK-------QATLTGTRSGAGVAATY 270 (371)
T ss_pred cCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHH-hhcccCccccCCC-------CcceEeeccChHHHHHH
Confidence 246899999999999999999999998775432 2332334443221 122344554 4467899
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
.+++.++.+|+++..++..+++++|.+.|++. +++++.++..++|+|.+. ..+++.++|.++|+.... +
T Consensus 271 ~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~---------~~~~v~~~L~~~gi~v~~-~ 339 (371)
T PRK13520 271 AVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDP---------NPDEVREKLRERGWRVSV-T 339 (371)
T ss_pred HHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecC---------CHHHHHHHHHHCCceecc-C
Confidence 99999999999999999999999999999987 888555667889999875 246788888888976432 2
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
....++ +++++++|++||+++++.|+++.
T Consensus 340 --~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 340 --RCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred --CCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 233456 99999999999999999998764
No 134
>PRK15029 arginine decarboxylase; Provisional
Probab=98.84 E-value=1.1e-07 Score=115.80 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=82.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CC---Cccc-----HHHHHHHHHhhh----hcCCcceEEEeecccCccc
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DK---NSLR-----GATLRQVMQQDE----TMGYIPFFVSTTLGTTSCC 209 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~---g~id-----~~~L~~~l~~~~----~~g~~p~~V~~t~Gtt~~G 209 (891)
.|++...+|-|+..++.+.+...++|++. +. |.++ ++.++++|++.. +++.+|..|++|.. |--|
T Consensus 247 ~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~G 325 (755)
T PRK15029 247 VVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDG 325 (755)
T ss_pred EEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcc
Confidence 48999999999999999999999998753 22 3455 999999997632 23456778888877 6779
Q ss_pred cccCHHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
.+-|+++|+++|++++++||||-|||+++.|++.+
T Consensus 326 v~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~ 360 (755)
T PRK15029 326 VCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY 360 (755)
T ss_pred eeeCHHHHHHHHHhcCCeEEEECccccccccCccc
Confidence 99999999999999999999999999998876643
No 135
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.83 E-value=2.3e-07 Score=104.82 Aligned_cols=252 Identities=19% Similarity=0.153 Sum_probs=167.6
Q ss_pred ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccc
Q psy852 50 AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKK 129 (891)
Q Consensus 50 ~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~ 129 (891)
..+|.+..+-.++++.|.++++-.+.+.. ..+++||..--+++.++..
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~~~~----------------------------ll~gsGt~amEAav~sl~~---- 78 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENGDVV----------------------------LLSGSGTLAMEAAVASLVE---- 78 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCcEE----------------------------EEcCCcHHHHHHHHHhccC----
Confidence 57899999999999999999997743211 1234454322222222211
Q ss_pred cCCccccccccCCeEEEecCCCChH--HHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 130 IHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 130 ~~~~~~~g~~~~~~~v~~S~~~H~S--v~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+...|++....=|+ +...+...+.+++.|.+...-.+|+++++++|+++.. .-.|.+++.-|.
T Consensus 79 -----------pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETS 143 (383)
T COG0075 79 -----------PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETS 143 (383)
T ss_pred -----------CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCc
Confidence 11123333333333 3344455677999999887778999999999995531 239999999999
Q ss_pred cccccCHHHHHHHHHHcCCceeeec--cccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHH
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDG--AYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQA 285 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDa--A~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~ 285 (891)
||..+|+++|+++|++||..+.||| ++||-
T Consensus 144 TGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~------------------------------------------------ 175 (383)
T COG0075 144 TGVLNPLKEIAKAAKEHGALLIVDAVSSLGGE------------------------------------------------ 175 (383)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEecccCCCc------------------------------------------------
Confidence 9999999999999999999999999 55442
Q ss_pred HhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEE
Q psy852 286 ISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFN 365 (891)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~ 365 (891)
++++|- + .+|-+.
T Consensus 176 ------------------------------------------------~~~vd~-----------w--------giDv~i 188 (383)
T COG0075 176 ------------------------------------------------PLKVDE-----------W--------GIDVAI 188 (383)
T ss_pred ------------------------------------------------ccchhh-----------c--------CccEEE
Confidence 222221 0 358888
Q ss_pred EeCCCcCCccCCceEEEEeccccchhhcccC-c-cccCCCCC-CcccccccccCCCCChh-HHHHHHHHHHhcHHHHHHH
Q psy852 366 VNVNKWLLTAFDSSCLWVADRYKLTSALVVD-P-LYLQHGHE-GAIDYRHWGIPLSRRFR-SLKLWFVIRTYGLSGLQKY 441 (891)
Q Consensus 366 ~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~-~-~y~~~~~~-~~~~~~~~~~~~sr~~~-~l~~w~~l~~~g~~G~~~i 441 (891)
...+|.+.+|-+-|++.+.++..- ...... + -|+.-... ..++- ....+.+-+.. -.++-.+++.+-.+|++++
T Consensus 189 tgSQK~l~~PPGla~v~~S~~a~e-~~~~~~~~~~ylDL~~~~~~~~~-~~~~p~Tppv~~i~aL~~al~~i~~EGle~r 266 (383)
T COG0075 189 TGSQKALGAPPGLAFVAVSERALE-AIEERKHPSFYLDLKKWLKYMEK-KGSTPYTPPVNLIYALREALDLILEEGLEAR 266 (383)
T ss_pred ecCchhccCCCccceeEECHHHHH-HHhcCCCCceeecHHHHHHHHhh-cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 888999999999999999876322 112222 2 23321110 00100 00111111222 3567788999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcccccc
Q psy852 442 IRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 442 i~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.++..++++++.+.+.+ -|++++.
T Consensus 267 ~~RH~~~~~a~r~~~~a-lGl~~~~ 290 (383)
T COG0075 267 IARHRRLAEALRAGLEA-LGLELFA 290 (383)
T ss_pred HHHHHHHHHHHHHHHHH-cCCcccc
Confidence 99999999999999987 4677775
No 136
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=98.82 E-value=2.3e-07 Score=107.32 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=101.3
Q ss_pred cccCCCCC-CHHHHHHHHHHHhcCCCCCcc------ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDAIGCIGFSW------AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~~n~~~~~~------~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+..+++.+ ..|.+...+...+.+..+..+ .+.|...++|..+.+.+++++|-+....
T Consensus 31 ~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv---------------- 94 (416)
T PRK13034 31 LELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANV---------------- 94 (416)
T ss_pred eeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEE----------------
Confidence 34444443 447777777777544443322 1357788999989999999998764310
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH-HHHHHH--cCCeE--EE
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV-EKAAMM--AFVRL--KI 168 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv-~kaa~~--~~~~v--~~ 168 (891)
++++|+..+...+..+ -. +.-.|++....|.+. ...+.. .+..+ ..
T Consensus 95 --------------~~~SG~~A~~~~l~al--~~-------------~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (416)
T PRK13034 95 --------------QPHSGSQANGAVYLAL--LK-------------PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQ 145 (416)
T ss_pred --------------ecCCcHHHHHHHHHHh--cC-------------CCCEEEEcCccceeeeecCCcceeccceeeeEE
Confidence 1346654433333332 11 223488888899873 222221 12122 34
Q ss_pred EecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 169 LEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 169 V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.++|. .+.+|+++|++.+.... |-+|+.+ ++..|..-|+.+|.++|+++|+++++|+|++
T Consensus 146 ~~~~~~~~~~d~~~le~~l~~~~-----~klVi~~--~~~~g~~~dl~~l~~la~~~g~~livD~Aha 206 (416)
T PRK13034 146 YGVDRLTGLIDYDEVEELAKEHK-----PKLIIAG--FSAYPRELDFARFREIADEVGALLMVDMAHI 206 (416)
T ss_pred cccccccCCcCHHHHHHHHhhcC-----CeEEEEC--CCccccccCHHHHHHHHHHcCCEEEEeCccc
Confidence 44443 46799999999886531 3455433 3456888899999999999999999999883
No 137
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=98.81 E-value=5.9e-07 Score=105.47 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=148.8
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEe---cc---cchHHHHHHHHHcCce--EE--EecCC-CC
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYC---SK---EAHSCVEKAAMMAFVR--LK--ILEPD-DK 538 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~---S~---~aH~Sv~Kaa~l~gv~--v~--~Vp~d-~~ 538 (891)
++|+.+|+.++.+.-. +.-.|++ +. ..|-++..++.+.... +. +.+.+ ++
T Consensus 107 ~SG~~AN~av~~aL~~-------------------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~ 167 (475)
T PLN03226 107 LSGSPANFAVYTALLQ-------------------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDEST 167 (475)
T ss_pred CchHHHHHHHHHHhCC-------------------CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCC
Confidence 6778898887766411 1123444 22 4455555444443332 22 23333 67
Q ss_pred CCcCHHHHHHHHHhhhhcCCcc-EEEE-ec-CCccc--------hhh----------hhcC----------CCCccEEEE
Q psy852 539 NSLRGATLRQVMQQDETMGYIP-FFVS-TT-LGTTS--------CYR----------KSQG----------IEYADSFNV 587 (891)
Q Consensus 539 G~mD~~~Le~aI~~d~~~g~ip-~~Vv-at-aGTT~--------c~~----------~ldG----------i~~aDSIs~ 587 (891)
|.+|+++|++++.+.. | ++|+ .+ .|... |++ |.-| ++.+|.++.
T Consensus 168 g~iD~d~Le~~l~~~~-----pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~ 242 (475)
T PLN03226 168 GLIDYDKLEKKAMLFR-----PKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTT 242 (475)
T ss_pred CCcCHHHHHHHHhhcC-----CeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEe
Confidence 9999999999987531 2 2233 11 12111 333 2112 247999999
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccC-C---CccccCCCCCccc-cCCcccccc-cccchHHHHHHHHHHHhhHHH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVD-P---LYLQHGHEGAIDY-RHWGIPLSR-RFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~---~Yl~~~~e~~~~~-~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~ 661 (891)
+.||||.+|.| |++++++. .... +... . +|.. ..+. ....++++= ......+..+++.+-..++++
T Consensus 243 t~hK~L~GP~G-g~I~~~~~-~~~~-~~~g~~~~~d~~~-----~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~ 314 (475)
T PLN03226 243 TTHKSLRGPRG-GMIFFRKG-PKPP-KGQGEGAVYDYED-----KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKA 314 (475)
T ss_pred cCcccccCCCc-eEEEEchh-hccc-ccCCCccHHHHHH-----HhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHH
Confidence 99999999999 78888654 2211 1100 0 1100 0000 001122221 122456677788777778888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec------cccCCe
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA------SQEQND 734 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s------~~~g~~ 734 (891)
+.++..+++++|.+.|++ .++.++.+ .+.+++.+.+.+. +-...++.+.|.+.|+..-... ......
T Consensus 315 ~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~-----gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~g 388 (475)
T PLN03226 315 YQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPL-----GLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGG 388 (475)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCC-----CCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCC
Confidence 899999999999999998 69999864 3356766666543 2234567777888887732221 111111
Q ss_pred EEE----EecCCCCHHHHHHHHHHHHHHHHH
Q psy852 735 EVF----ELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 735 ~l~----sv~~~tT~edId~li~~L~ei~~~ 761 (891)
+.+ .++...+++|++++.+.|.+++..
T Consensus 389 iRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 389 VRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 124 256678999999999999988854
No 138
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.81 E-value=2.5e-07 Score=108.26 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=66.3
Q ss_pred EEecCCCChHHHHHH-HHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc----
Q psy852 145 AYCSKEAHSCVEKAA-MMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC---- 209 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G---- 209 (891)
|+.+ ..||....+. .+.|.+++.+++++ .|.+|+++|++.+.+... ..+.+|+++.-+|.+|
T Consensus 119 Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~v~ 195 (460)
T PRK13238 119 VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGGQPV 195 (460)
T ss_pred EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCCcCC
Confidence 4444 4487776665 56788999999863 255999999999975310 1245888888888887
Q ss_pred cccCHHHHHHHHHHcCCceeeeccc
Q psy852 210 SFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 210 avDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
..+++++|+++|+++|++|+.|+|+
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Daa~ 220 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDAAR 220 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcc
Confidence 3566889999999999999999977
No 139
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.80 E-value=1.7e-06 Score=98.64 Aligned_cols=86 Identities=10% Similarity=0.179 Sum_probs=68.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++|+ ++.+|+++|++.+++.. ...+-+|+.+ +.+|...|+++|+++|+
T Consensus 71 ~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~t~~v~~~---~~~G~~~~~~~i~~l~~ 145 (380)
T TIGR03588 71 RVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK--GKLPKAIVPV---DFAGKSVDMQAIAALAK 145 (380)
T ss_pred EEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhccc--CCCceEEEEe---CCCCccCCHHHHHHHHH
Confidence 488888899999888877888999999974 67899999999997421 0113344433 34799999999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|++|.+|+|+
T Consensus 146 ~~~~~lI~D~a~ 157 (380)
T TIGR03588 146 KHGLKIIEDASH 157 (380)
T ss_pred HcCCEEEEECCC
Confidence 999999999988
No 140
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.79 E-value=2e-07 Score=103.05 Aligned_cols=245 Identities=11% Similarity=0.006 Sum_probs=152.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+++ ++.|+++++..++.++.. ..-+|+++..+|.++..++...+.+++.+|.++++.++
T Consensus 61 ~~~--~~~~~t~a~~~~~~~~~~-------------------~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 119 (350)
T cd00609 61 EIV--VTNGAQEALSLLLRALLN-------------------PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFL 119 (350)
T ss_pred eEE--EecCcHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCc
Confidence 445 567888888777666521 12358899999999999999999999999999888887
Q ss_pred H--HHHHHHHHhhhhcCCccEEEEec---CCccc-----------hhh-----hhcC-------------------CCCc
Q psy852 543 G--ATLRQVMQQDETMGYIPFFVSTT---LGTTS-----------CYR-----KSQG-------------------IEYA 582 (891)
Q Consensus 543 ~--~~Le~aI~~d~~~g~ip~~Vvat---aGTT~-----------c~~-----~ldG-------------------i~~a 582 (891)
. +.+++.++.. ...+++... .|... |++ .+|+ ....
T Consensus 120 ~~~~~~~~~~~~~----~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~ 195 (350)
T cd00609 120 LDLELLEAAKTPK----TKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER 195 (350)
T ss_pred cCHHHHHhhcCcc----ceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCc
Confidence 7 5555554332 112222221 22221 322 1222 1225
Q ss_pred cEEEEcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 583 DSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 583 DSIs~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
|.+..+.||+++ .+.++|+++++++... +.+.....+.. ++ ........++..++... +++++
T Consensus 196 ~~~~~s~~K~~~~~g~~~G~i~~~~~~~~-~~~~~~~~~~~-----------~~---~~~~~~~~~~~~l~~~~-~~~~~ 259 (350)
T cd00609 196 VIVLRSFSKTFGLPGLRIGYLIAPPEELL-ERLKKLLPYTT-----------SG---PSTLSQAAAAAALDDGE-EHLEE 259 (350)
T ss_pred EEEEeecccccCCcccceEEEecCHHHHH-HHHHHHHHhcc-----------cC---CChHHHHHHHHHHhCcH-HHHHH
Confidence 777889999998 5567899988774332 22221111110 00 11122233444444433 67888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeEE-EE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDEV-FE 738 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~l-~s 738 (891)
..++..++++++.+.|++.+...+..+.....++|++.+. ...+.+.+.|.+.|+....+.... +...+ ++
T Consensus 260 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~ 333 (350)
T cd00609 260 LRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLS 333 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEE
Confidence 8889999999999999987665543344456777777532 123455666677787654433322 55567 88
Q ss_pred ecCCCCHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ 756 (891)
++.+ .+||++++++|+
T Consensus 334 ~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 334 FATP--EEELEEALERLA 349 (350)
T ss_pred eeCC--HHHHHHHHHHhh
Confidence 8877 999999999886
No 141
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.78 E-value=2.5e-07 Score=106.08 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=63.8
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.... +...|.+++.++++ |++++++.+++. +.+|++...+|.+|.+.|+++|+++
T Consensus 103 Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~l 171 (390)
T PRK08133 103 VVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAEI 171 (390)
T ss_pred EEEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHHH
Confidence 77788888766543 23457788888875 789999888654 3477777889999999999999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++|+++++|.++
T Consensus 172 a~~~gi~livD~t~ 185 (390)
T PRK08133 172 AHAAGALLVVDNCF 185 (390)
T ss_pred HHHcCCEEEEECCC
Confidence 99999999999988
No 142
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.78 E-value=6.8e-07 Score=108.09 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=77.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--C---CcccH-----HHHHHHHHhhhhcCCcceEEEeecccCccccccC
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--K---NSLRG-----ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN 213 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~---g~id~-----~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp 213 (891)
.|++...+|-|+..++.+.|...+++++.- . |.|+. +.++++|++.... ++|..+++|.. |--|.+-|
T Consensus 237 ~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd 314 (713)
T PRK15399 237 TLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYN 314 (713)
T ss_pred EEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeC
Confidence 488999999999999999999999987642 2 34566 8899999875432 45778888888 77899999
Q ss_pred HHHHHHHHHHcCCce-eeeccccCCccccCCC
Q psy852 214 LAEIGPVAKEFDVWL-HVDGAYAGSSFICPEF 244 (891)
Q Consensus 214 l~~I~~i~~~~~~~l-HvDaA~GG~~~~~~~~ 244 (891)
+++|.++| |+.+ |+|-||||++.|+|.+
T Consensus 315 ~~~I~~~~---g~~~ilvDEAhgah~~F~p~~ 343 (713)
T PRK15399 315 TDWIKQTL---DVPSIHFDSAWVPYTHFHPIY 343 (713)
T ss_pred HHHHHHHh---CCCEEEEeccchhhhhcCccc
Confidence 99999999 6665 9999999998776543
No 143
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.78 E-value=1e-06 Score=100.63 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=68.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.|++|.+ +.+|+++|++.+.+.+ .+|+. ++.+|...|+++|.++|+
T Consensus 75 ~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~t------kav~~---~~~~G~~~d~~~i~~~a~ 145 (379)
T PRK11658 75 EVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRT------KAIIP---VHYAGAPADLDAIRAIGE 145 (379)
T ss_pred EEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCC------eEEEE---eCCCCCcCCHHHHHHHHH
Confidence 4888889999998888777889999999865 4699999999987543 24442 335799999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|+|++
T Consensus 146 ~~gi~vi~D~a~a 158 (379)
T PRK11658 146 RYGIPVIEDAAHA 158 (379)
T ss_pred HcCCeEEEECCCc
Confidence 9999999999983
No 144
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=98.77 E-value=8.4e-08 Score=108.34 Aligned_cols=239 Identities=12% Similarity=0.001 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccC
Q psy852 52 SPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIH 131 (891)
Q Consensus 52 ~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~ 131 (891)
+|.+.++-..+.+.|.+++|.|.+.. -+| .+++||..-++...++....
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~~~-------v~~--------------------~~gsgT~a~ea~~~nl~~~~---- 80 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDNYE-------VLF--------------------LQGGATGQFAAVPLNLLAEG---- 80 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCce-------EEE--------------------EcCCchHHHHHHHHhcCCCC----
Confidence 56667899999999999999854320 111 12447655444444442211
Q ss_pred CccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCC----cccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 132 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN----SLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 132 ~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g----~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
.+-+++.++..+|-...-+-+.+ . +..+.+++.+ .+|+++++. .+ .+-+|.+|+..|.
T Consensus 81 --------~~~l~i~~G~fg~r~~~~a~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETs 142 (349)
T TIGR01364 81 --------KVADYIVTGAWSKKAAKEAKKYG-V-VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETI 142 (349)
T ss_pred --------CeEEEEECCHHHHHHHHHHHHhC-C-cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCc
Confidence 12345666777777754444444 4 6666665444 345554441 11 2459999999999
Q ss_pred cccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHh
Q psy852 208 CCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAIS 287 (891)
Q Consensus 208 ~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~ 287 (891)
||...| ++++.+++.+.|||+.+ .++..++
T Consensus 143 tGv~~~-----~l~~~~~~l~iVDavss---------------------------------~g~~~id------------ 172 (349)
T TIGR01364 143 HGVEFR-----ELPDVKNAPLVADMSSN---------------------------------ILSRPID------------ 172 (349)
T ss_pred ccEecc-----eecccCCCeEEEEcccc---------------------------------ccCccCC------------
Confidence 999977 66666788888998771 1111000
Q ss_pred hhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEe
Q psy852 288 KLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVN 367 (891)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~ 367 (891)
+ + ..|.+.++
T Consensus 173 ---------------------------------------------------------------~----~---~~d~~~~s 182 (349)
T TIGR01364 173 ---------------------------------------------------------------V----S---KFGLIYAG 182 (349)
T ss_pred ---------------------------------------------------------------H----H---HccEEEEe
Confidence 0 0 13789999
Q ss_pred CCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCCh-hHHHHHHHHHHhcHH-HHHHHHHHH
Q psy852 368 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLS-GLQKYIRRH 445 (891)
Q Consensus 368 ~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~-G~~~ii~~~ 445 (891)
+||++ +|-|.|+++++++..-. .-...+.|.... .........++-+. ...++-.+|+++-.+ |+.++.++.
T Consensus 183 sqK~l-gP~Glg~l~~s~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~ 256 (349)
T TIGR01364 183 AQKNI-GPAGLTVVIVRKDLLGR-ASRITPSMLNYK----IHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRN 256 (349)
T ss_pred ccccc-CCCceEEEEECHHHHhh-cccCCCCcchHH----HHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99976 59999999999753211 111122222110 00001122233333 356888999999988 799999999
Q ss_pred HHHHHHHHHhhccCCccccc
Q psy852 446 CELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv 465 (891)
.++++++.+.|.+.+++...
T Consensus 257 ~~l~~~l~~~l~~~~gl~~~ 276 (349)
T TIGR01364 257 QAKAQLLYDTIDNSNGFYRN 276 (349)
T ss_pred HHHHHHHHHHHHhCCCeecc
Confidence 99999999999999876444
No 145
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.76 E-value=1.7e-07 Score=113.29 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=77.1
Q ss_pred EEEecCCCChHHHHH-HHHcCCeEEEEecC--CC---CcccHHH-----HHHHHHhh---hhcCCcc-eEEEeecccCcc
Q psy852 144 MAYCSKEAHSCVEKA-AMMAFVRLKILEPD--DK---NSLRGAT-----LRQVMQQD---ETMGYIP-FFVSTTLGTTSC 208 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka-a~~~~~~v~~V~~d--~~---g~id~~~-----L~~~l~~~---~~~g~~p-~~V~~t~Gtt~~ 208 (891)
.|++...+|-|+..+ +.+.|...+++++. +. |.|+.+. ++++|++. ..+...| .++++|.. |--
T Consensus 216 ~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYd 294 (720)
T PRK13578 216 LVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYD 294 (720)
T ss_pred EEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCc
Confidence 488999999999996 67888899998764 32 4467555 88888765 2223355 47777776 667
Q ss_pred ccccCHHHHHHH-HHHcCCceeeeccccCCccccCCC
Q psy852 209 CSFDNLAEIGPV-AKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 209 GavDpl~~I~~i-~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
|.+-|+++|+++ ++.++ +||+|-|||+++.|+|.|
T Consensus 295 G~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~ 330 (720)
T PRK13578 295 GTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMM 330 (720)
T ss_pred ceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccc
Confidence 999999999998 67777 999999999998876643
No 146
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.76 E-value=4e-07 Score=105.01 Aligned_cols=85 Identities=5% Similarity=-0.013 Sum_probs=60.9
Q ss_pred cCCCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccc----cc
Q psy852 148 SKEAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS----FD 212 (891)
Q Consensus 148 S~~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga----vD 212 (891)
+..+|++-.++. ...|...+-|.+ ..+|.||++.|++.|++... ..+.+|+++..++..|. .+
T Consensus 121 p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~--~~~~lV~a~itvn~~GGqpvs~~ 198 (460)
T PRK13237 121 PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA--ENIAYICLAVTVNLAGGQPVSMA 198 (460)
T ss_pred CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC--CccCceEEEEecccCCCeeCCHH
Confidence 777888888874 455553333321 23699999999999975321 22335666666676642 46
Q ss_pred CHHHHHHHHHHcCCceeeeccc
Q psy852 213 NLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 213 pl~~I~~i~~~~~~~lHvDaA~ 234 (891)
++.+|.++|+++|++||.|||.
T Consensus 199 ~m~~I~elA~~~Gl~Vi~DaAr 220 (460)
T PRK13237 199 NMRAVRELCDKHGIKVFFDATR 220 (460)
T ss_pred hHHHHHHHHHHcCCEEEEECcc
Confidence 8999999999999999999988
No 147
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.76 E-value=1.5e-07 Score=106.84 Aligned_cols=262 Identities=12% Similarity=-0.019 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.++..+......... ...-++.+.++-.++.+.+++++|.+++.. - .+
T Consensus 14 ~~~~v~~a~~~~~~~~~~-~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~-------v---------------------~f 64 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFG-TSHRQAPVKNLVGRVREGLAELFSLPDGYE-------V---------------------IL 64 (361)
T ss_pred CCHHHHHHHHhcCccccc-cCcCChHHHHHHHHHHHHHHHHhCCCCCce-------E---------------------EE
Confidence 447777765533222222 224567788999999999999999965410 1 12
Q ss_pred -ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH-HHHHHH---cCCeEEEEecCCCCcccHHHHH
Q psy852 109 -LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV-EKAAMM---AFVRLKILEPDDKNSLRGATLR 183 (891)
Q Consensus 109 -~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv-~kaa~~---~~~~v~~V~~d~~g~id~~~L~ 183 (891)
+++||..-+....++... .. ++++.-+|.+- .+.+.+ .+ ++..++++....++.+
T Consensus 65 ~~gs~T~a~~~~~~~l~~~--------------~~--l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~--- 124 (361)
T TIGR01366 65 GNGGATAFWDAATFGLIEK--------------KS--LHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQ--- 124 (361)
T ss_pred ECCchhHHHHHHHHhcccc--------------cc--cEEecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCc---
Confidence 245765544444443211 11 22223333222 222222 23 6777777654444432
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCccc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIW 263 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~ 263 (891)
+.+ .+-+|++|+.+|.+|.+.|+++| ++++|+.+.|||++.
T Consensus 125 --~~~------~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs---------------------------- 165 (361)
T TIGR01366 125 --ADP------GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSG---------------------------- 165 (361)
T ss_pred --cCC------CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCcc----------------------------
Confidence 222 24599999999999999999998 478899999999871
Q ss_pred ccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccC
Q psy852 264 YERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAG 343 (891)
Q Consensus 264 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 343 (891)
.++..+ .
T Consensus 166 -----~g~~~i-------------------------------------------------------------d------- 172 (361)
T TIGR01366 166 -----AGGLPV-------------------------------------------------------------D------- 172 (361)
T ss_pred -----ccCCCC-------------------------------------------------------------C-------
Confidence 111111 0
Q ss_pred ccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEecccc--chhhccc---CccccCCCCCCcccccccccCCC
Q psy852 344 SSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVV---DPLYLQHGHEGAIDYRHWGIPLS 418 (891)
Q Consensus 344 ~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~--~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~s 418 (891)
++ .+|.+.+++||+++.|-+.++++++++.. +...... .|.|+.-.... .+.......++
T Consensus 173 -----------v~---~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~-~~~~~~~t~~t 237 (361)
T TIGR01366 173 -----------IA---ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAV-DNSLKNQTYNT 237 (361)
T ss_pred -----------HH---HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHH-hccccCCCCCC
Confidence 01 26999999999988885555555565421 1111100 01222110000 00000111222
Q ss_pred CChhH-HHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 419 RRFRS-LKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 419 r~~~~-l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
-+... +++-.+++++-.+ |+..+.++..++++++++.|.+.+.++++.
T Consensus 238 p~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~ 287 (361)
T TIGR01366 238 PAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFV 287 (361)
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 22333 3677889988887 699999999999999999999988766663
No 148
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.75 E-value=5.9e-07 Score=102.63 Aligned_cols=158 Identities=9% Similarity=0.096 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccc
Q psy852 32 SVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGG 111 (891)
Q Consensus 32 ~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~g 111 (891)
..+.+.+..........|...+...++++.+.+++.+.+|.+-. |+.++ .|+|
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------------~~~i~--------------~t~G 101 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD-------------VDNVI--------------VTAG 101 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------------cccEE--------------EeCC
Confidence 44445555444433333433455678888899998888776422 11111 2445
Q ss_pred hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhh
Q psy852 112 GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQD 189 (891)
Q Consensus 112 Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~ 189 (891)
++. +....+.. --. +.-.|++..-+|.+....+...|.+++.+++|++ +.+|+++|++.+++.
T Consensus 102 ~~~-al~~~~~~-l~~-------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 166 (391)
T PRK08361 102 AYE-ATYLAFES-LLE-------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR 166 (391)
T ss_pred hHH-HHHHHHHH-hcC-------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc
Confidence 543 32222211 111 1123777778898888888777889999999864 479999999988754
Q ss_pred hhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeeccccCC
Q psy852 190 ETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 190 ~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+-+|+++..+|.+|.+-| +++|+++|+++++++++|.+|+.+
T Consensus 167 ------~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~ 211 (391)
T PRK08361 167 ------TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHF 211 (391)
T ss_pred ------cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccc
Confidence 236667778999999999 889999999999999999999543
No 149
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.75 E-value=1.7e-07 Score=107.03 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=66.0
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+..+.+ ...+.+++.++++ |++++++++++. +.+|.++..+|.+|.+-|+++|++
T Consensus 87 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~ 155 (378)
T TIGR01329 87 EIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISE 155 (378)
T ss_pred EEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHH
Confidence 4777788888876643 2357788888764 889999888643 358888889999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++.||+|++
T Consensus 156 la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 156 MAHAQNALVVVDNTMM 171 (378)
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999883
No 150
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=98.73 E-value=8.9e-08 Score=108.59 Aligned_cols=258 Identities=13% Similarity=0.009 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHhcC---CCCCcc---ccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy852 29 SYPSVLADMLSDAIG---CIGFSW---AASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTP 102 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n---~~~~~~---~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~ 102 (891)
..+.++..|.....+ .....+ ..++.+.++-.++.+.+++++|.|++.. -+|
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~-------v~~--------------- 71 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYK-------VLF--------------- 71 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcE-------EEE---------------
Confidence 456777777766532 222222 3456667899999999999999854320 111
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHH
Q psy852 103 ANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGAT 181 (891)
Q Consensus 103 ~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~ 181 (891)
.+++|+..--+..+++.... .+-+++.++..+|-+...+-+.+ .. ..++++. .|..+..+
T Consensus 72 -----~~gsgt~~~Ea~~~nl~~~g------------~~~l~i~~G~fg~r~~~~a~~~g-~~-~~~~~~~~~g~~~~~~ 132 (360)
T PRK05355 72 -----LQGGASLQFAMVPMNLLGGG------------KKADYVDTGSWSKKAIKEAKKYG-EV-NVAASSEDDGFTYIPP 132 (360)
T ss_pred -----EcCCchHHHHHHHHhcCCCC------------CeEEEEECCHHHHHHHHHHHHhC-Cc-eEEecccccCCCCCCC
Confidence 12344321112223331110 12355677778888755444555 33 6666654 78888777
Q ss_pred HHH-HHHhhhhcCCcceEEEeecccCcccccc-CHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCC
Q psy852 182 LRQ-VMQQDETMGYIPFFVSTTLGTTSCCSFD-NLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHL 259 (891)
Q Consensus 182 L~~-~l~~~~~~g~~p~~V~~t~Gtt~~GavD-pl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~ 259 (891)
+++ .++++ +-+|.+|+..|.||.+. ||.+| +|+.+.|||++.
T Consensus 133 ~~~~~l~~~------~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss------------------------ 176 (360)
T PRK05355 133 LDEWQLSDD------AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSD------------------------ 176 (360)
T ss_pred hhhccCCCC------CCEEEEccCCCcceEecCccccc------CCCcEEEEcCcc------------------------
Confidence 777 56443 45999999999999997 77777 788999999771
Q ss_pred CcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeec
Q psy852 260 SPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDG 339 (891)
Q Consensus 260 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 339 (891)
.++..++
T Consensus 177 ---------~g~~~id---------------------------------------------------------------- 183 (360)
T PRK05355 177 ---------ILSRPID---------------------------------------------------------------- 183 (360)
T ss_pred ---------ccCccCC----------------------------------------------------------------
Confidence 1111110
Q ss_pred cccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhccc-CccccCCCCCCcccccccccCCC
Q psy852 340 AYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLS 418 (891)
Q Consensus 340 ~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~s 418 (891)
++ ..|.+.+++||++ +|-|.|+++++++..-. +.. .+.|+..... . ......++
T Consensus 184 ---------------v~---~~d~~~~ssqK~l-gP~Glg~l~~s~~~l~~--~~~~~~~~~~~~~~--~--~~~~~~~T 238 (360)
T PRK05355 184 ---------------VS---KFGLIYAGAQKNI-GPAGLTIVIVREDLLGR--ALPSIPSMLDYKTH--A--DNDSMYNT 238 (360)
T ss_pred ---------------HH---HccEEEEeccccc-cCCceEEEEECHHHHhh--cccCCChHHHHHHH--H--hcCCccCC
Confidence 01 1378999999976 59999999999763211 111 1223221100 0 01112233
Q ss_pred CCh-hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCc
Q psy852 419 RRF-RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPR 461 (891)
Q Consensus 419 r~~-~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~ 461 (891)
-+. ...++-.+|+++-.+ |+.++.++..++++++.+.|++.+.
T Consensus 239 p~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~ 283 (360)
T PRK05355 239 PPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF 283 (360)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333 356888999999888 8999999999999999999999774
No 151
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.72 E-value=3e-07 Score=104.51 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=64.0
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+ ...+.++..++.+ |++++++.+++. +.+|++...+|.+|.+.|+++|++
T Consensus 81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~ 149 (369)
T cd00614 81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAE 149 (369)
T ss_pred EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHH
Confidence 3777778887766543 2346688888765 588888888643 347777888899999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++++|.||+
T Consensus 150 la~~~g~~livD~t~~ 165 (369)
T cd00614 150 LAHEHGALLVVDNTFA 165 (369)
T ss_pred HHHHcCCEEEEECCCc
Confidence 9999999999999984
No 152
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.72 E-value=7.3e-07 Score=102.53 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=61.8
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+..... ...+.+++.++ .+|++++++++++. +-+|.++..+|.+|.+-|+++|.++
T Consensus 107 Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~l 175 (398)
T PRK07504 107 VVAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAKI 175 (398)
T ss_pred EEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHHH
Confidence 667666666544333 23466777774 37899999988654 3488888899999999999999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++|+++++|+||
T Consensus 176 a~~~gi~lvvD~a~ 189 (398)
T PRK07504 176 ANQAGAKLVVDNVF 189 (398)
T ss_pred HHHcCCEEEEECCc
Confidence 99999999999988
No 153
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=98.71 E-value=2.1e-06 Score=100.20 Aligned_cols=204 Identities=12% Similarity=0.118 Sum_probs=126.6
Q ss_pred eEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhh----------h----h------
Q psy852 529 RLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYR----------K----S------ 576 (891)
Q Consensus 529 ~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~----------~----l------ 576 (891)
+.+..++| ++|.+|+++|++.+.+. .|.+++..+ |... |.+ | +
T Consensus 194 ~~~~y~vd~~~g~iD~d~l~~~~~~~-----~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~ 268 (493)
T PRK13580 194 HQRSYGVDPDTGLLDYDEIAALAREF-----KPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFT 268 (493)
T ss_pred eeEecccCcccCccCHHHHHHHHhhc-----CCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccch
Confidence 56666676 56999999999999874 345554422 2221 322 1 1
Q ss_pred ---cCCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 577 ---QGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 577 ---dGi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
....++|.++++.||++.+|.| |++++++. +.+.+....+|+.++. +. -.....-.+++.
T Consensus 269 ~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~--l~~~L~~a~P~i~gg~----------l~----p~iAA~avAl~e 331 (493)
T PRK13580 269 GDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE--YADAVDKGCPLVLGGP----------LP----HVMAAKAVALAE 331 (493)
T ss_pred hhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH--HHHHHhhCCCcccCCC----------cc----HHHHHHHHHHHH
Confidence 1234789999999999988996 77777644 2222211123333211 00 011112223444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE---eecc
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM---VPAS 729 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~---s~s~ 729 (891)
+-...+.+..++..+++++|.+.|++. +|.++. ..+.++|.+.+.+. +.....+.+.|.+.|++.. .|+.
T Consensus 332 ~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~-----~~~g~~a~~~L~e~GI~vn~i~~Ptv 405 (493)
T PRK13580 332 ARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSF-----GLTGRQAESALLDAGIVTNRNSIPSD 405 (493)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCH-----HHHHHHHHHHHHHCCeEEccccCCCC
Confidence 433456778889999999999999884 777764 35678998888543 2222356678889998732 2222
Q ss_pred ccC---CeEE-EEecC----CCCHHHHHHHHHHHHHHHH
Q psy852 730 QEQ---NDEV-FELQE----RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 ~~g---~~~l-~sv~~----~tT~edId~li~~L~ei~~ 760 (891)
..+ ..-+ ++++. ..+++||+.+++.|.++..
T Consensus 406 p~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 406 PNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred CCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 233 3445 77655 4479999999999988774
No 154
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.68 E-value=3.5e-07 Score=96.58 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=82.5
Q ss_pred CeEEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcC-CcceEEEeecccCccccccCHHHHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMG-YIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g-~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
...|+.-..+||+..-|+...|.++..||-. ++..++++...+.|++-+++| ..|.+...|+...+.|.+.|.+.|+
T Consensus 100 gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva 179 (382)
T COG1103 100 GDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVA 179 (382)
T ss_pred CCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHH
Confidence 3457777899999999998888899999953 578999999999999987665 7789999999999999999999999
Q ss_pred HHHHHcCCceeeeccc
Q psy852 219 PVAKEFDVWLHVDGAY 234 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~ 234 (891)
+||++||+++.+.+||
T Consensus 180 ~ic~e~gvPlllN~AY 195 (382)
T COG1103 180 KICREYGVPLLLNCAY 195 (382)
T ss_pred HHHHHcCCceEeecce
Confidence 9999999988888887
No 155
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.68 E-value=2.2e-07 Score=104.81 Aligned_cols=271 Identities=15% Similarity=0.152 Sum_probs=192.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++.+.+++.+...+. .++ +++|++++++.++.+++...... .+...|+++..+|+++.+++...
T Consensus 63 ~~~~~la~~~g~~~~-~~~--~~~g~~~~~~~~~~~~~~~~~~~-------------~~g~~vl~~~~~h~~~~~~~~~~ 126 (373)
T TIGR03812 63 EVVGSLGNLLHLPDA-YGY--IVSGGTEANIQAVRAAKNLAREE-------------KRTPNIIVPESAHFSFEKAAEML 126 (373)
T ss_pred HHHHHHHHHhCCCCC-CeE--EeccHHHHHHHHHHHHHHHHhcc-------------CCCcEEEECCcchHHHHHHHHHc
Confidence 344566777665333 222 46688999988887765432110 01236889999999999999988
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc--------hhh-----hhcC-------------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS--------CYR-----KSQG------------- 578 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~--------c~~-----~ldG------------- 578 (891)
|++++.+|.+.++.+|+++|++++++++ ...+++. +..|+.. |++ ++|+
T Consensus 127 G~~~~~v~~~~~~~~d~~~l~~~l~~~~---~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~ 203 (373)
T TIGR03812 127 GLELRYAPLDEDYTVDVKDVEDLIDDNT---IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKG 203 (373)
T ss_pred CCeEEEEeeCCCCCcCHHHHHHHHhhCc---EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcC
Confidence 9999999999999999999999997642 0111121 2344433 332 1222
Q ss_pred -----C----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHH
Q psy852 579 -----I----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLW 648 (891)
Q Consensus 579 -----i----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW 648 (891)
+ ..+|++++|+|||+++|.++|.+++++++.+. .+.....|+.... .+...++|. ...+.+|
T Consensus 204 ~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~-~l~~~~~~~~~~~-------~~~~~gt~~~~~~~~~~ 275 (373)
T TIGR03812 204 YNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK-YLSVDAPYLTVKK-------QATITGTRSGASAAATY 275 (373)
T ss_pred CCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh-hhcccCcccCCCC-------CcceEeechhHHHHHHH
Confidence 1 26799999999999999999999988776443 2322234443211 223345664 4567899
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
.+++.++.+|+++..++..+++++|.+.|++++ ++.+.++..++|+|++++ ...+.+.|.++|+++. ..
T Consensus 276 ~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~---------~~~v~~~L~~~gi~v~-~~ 344 (373)
T TIGR03812 276 AVIKYLGREGYRKIVAECMENTRYLVEELKKIG-FEPVIEPVLNIVAFEVDD---------PEEVRKKLRDRGWYVS-VT 344 (373)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEcCCCceEEEEEeCC---------HHHHHHHHHHCCceec-cC
Confidence 999999999999999999999999999999974 554445678999998852 2468888888897743 22
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
....++ ++++.++|++|+|+++++|++
T Consensus 345 --~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 345 --RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred --CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 234567 999999999999999999976
No 156
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.67 E-value=2.2e-06 Score=96.85 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=68.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+...++.+.+.+++.++. .|+++|++.++... ..+.++++....|.+|.++|+++|+++|++
T Consensus 125 ~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~ 196 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARR 196 (385)
T ss_pred EEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHH
Confidence 4777888999999988877778888875 38899999886531 124566666667889999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++++|.+|+
T Consensus 197 ~~~~li~De~~~ 208 (385)
T PRK05958 197 HGAWLLVDEAHG 208 (385)
T ss_pred hCCEEEEECccc
Confidence 999999999994
No 157
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.66 E-value=4.9e-06 Score=94.80 Aligned_cols=254 Identities=10% Similarity=0.037 Sum_probs=150.2
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCce
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~ 529 (891)
+.+++.+.. +. .+ +++|++++|..++.+. . .+.-.|+++..+|.++..++.+.+.+
T Consensus 90 ~~ia~~~g~-~~-~i---i~~~~~~a~~~~~~~l----~---------------~~gd~vi~~~~~~~s~~~~~~~~~~~ 145 (393)
T TIGR01822 90 AKIAAFLGT-ED-TI---LYASCFDANGGLFETL----L---------------GAEDAIISDALNHASIIDGVRLCKAK 145 (393)
T ss_pred HHHHHHhCC-Cc-EE---EECchHHHHHHHHHHh----C---------------CCCCEEEEeccccHHHHHHHHhcCCc
Confidence 456666654 22 23 3457788888554332 1 11235888999999999888876665
Q ss_pred EEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE-----ecCCccc--------hhhh-----hc--------------
Q psy852 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-----TTLGTTS--------CYRK-----SQ-------------- 577 (891)
Q Consensus 530 v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-----ataGTT~--------c~~~-----ld-------------- 577 (891)
.+.++ .+|+++|+++|.+....+..+.+|+ +..|... |++| +|
T Consensus 146 ~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~ 220 (393)
T TIGR01822 146 RYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRG 220 (393)
T ss_pred eEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCc
Confidence 54433 4899999999987433221222332 2334443 4331 11
Q ss_pred -----CC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCCCccccCCccccccc-ccchHHHH
Q psy852 578 -----GI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWF 649 (891)
Q Consensus 578 -----Gi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~ 649 (891)
++ ..+|.++.++||+++++ ..|+++.+. ... +.+.. ...|.. .++.. ........
T Consensus 221 ~~~~~~~~~~~di~~~s~sK~l~g~-r~G~~~~~~-~~~-~~l~~~~~~~~~--------------~~~~~~~~~~a~~~ 283 (393)
T TIGR01822 221 SHELCGVMGRVDIITGTLGKALGGA-SGGFTTARK-EVV-ELLRQRSRPYLF--------------SNSLPPAVVGASIK 283 (393)
T ss_pred hHHhcCCCCCCeEEEEEChHHhhCC-CcEEEEeCH-HHH-HHHHHhCcccee--------------cCCCCHHHHHHHHH
Confidence 11 14789999999998765 457766543 222 22211 111211 11111 11112233
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc
Q psy852 650 VIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729 (891)
Q Consensus 650 ~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~ 729 (891)
+++.+ +..++..++..++++++.+.|++. ++++. ++..+++.+.+.+ ......+.+.|.++|+... +..
T Consensus 284 al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~------~~~~~~l~~~L~~~gI~v~-~~~ 352 (393)
T TIGR01822 284 VLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PADHPIIPVMLYD------AVLAQRFARRLLEEGIYVT-GFF 352 (393)
T ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC------HHHHHHHHHHHHHCCeeEe-eeC
Confidence 33332 345566778889999999999875 67664 3345577776642 1245678889988897644 322
Q ss_pred c----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 730 Q----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 730 ~----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. .+...+ ++++..+|++||+++++.|+++.+
T Consensus 353 ~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 353 YPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1 233456 999999999999999999998753
No 158
>PLN02509 cystathionine beta-lyase
Probab=98.66 E-value=5.5e-07 Score=105.24 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=122.5
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+..+.+ ...+.+++.++. .|++++++++.+. +.+|+++..+|.+|.+.||++|++
T Consensus 173 ~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~ 241 (464)
T PLN02509 173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAE 241 (464)
T ss_pred EEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHH
Confidence 3777888887776443 235667777753 3688898888654 348888999999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++.+|.||+.....
T Consensus 242 lAk~~g~~lIVD~A~a~~~~~----------------------------------------------------------- 262 (464)
T PLN02509 242 MAHAQGALVLVDNSIMSPVLS----------------------------------------------------------- 262 (464)
T ss_pred HHHHcCCEEEEECCccccccC-----------------------------------------------------------
Confidence 999999999999998422110
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD-- 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~-- 377 (891)
. +. + ..+|-+..++|||+.+|-+
T Consensus 263 ------------------------------------------------~----pl--~-~gaDivv~S~tK~l~G~gdv~ 287 (464)
T PLN02509 263 ------------------------------------------------R----PL--E-LGADIVMHSATKFIAGHSDVM 287 (464)
T ss_pred ------------------------------------------------C----hh--h-cCCcEEEecCcccccCCCccc
Confidence 0 00 0 1369999999999999876
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|++.+++...... +. .+... ......+...|+.++ |.+-+..++++..++|+++++.|+
T Consensus 288 gG~v~~~~~~l~~~-~~----~~~~~-------------~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~ 347 (464)
T PLN02509 288 AGVLAVKGEKLAKE-VY----FLQNS-------------EGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLS 347 (464)
T ss_pred eeEEEeccHHHHHH-HH----HHHHh-------------cCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHh
Confidence 77777765432111 10 00000 001134556676665 445667899999999999999999
Q ss_pred cCCccccc
Q psy852 458 RDPRFEIS 465 (891)
Q Consensus 458 ~~~~~eVv 465 (891)
++|.++-+
T Consensus 348 ~~p~V~~V 355 (464)
T PLN02509 348 SHPRVKKV 355 (464)
T ss_pred cCCCccEE
Confidence 99987533
No 159
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.65 E-value=1.2e-06 Score=100.14 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=61.1
Q ss_pred EEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+... .+...+.+++.++.+ |++++++.+++. +.+|.+...+|.+|.+.|+++|.++
T Consensus 96 Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~l 164 (380)
T TIGR01325 96 VVASRSLFGSTVGFISEILPRFGIEVSFVDPT-----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAEL 164 (380)
T ss_pred EEEecCCcchHHHHHHHHHHHhCCEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHH
Confidence 5556666654322 333456788888765 788888877543 3477788889999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.||+
T Consensus 165 a~~~gi~livD~a~~ 179 (380)
T TIGR01325 165 AHAIGALLVVDNVFA 179 (380)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999983
No 160
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.65 E-value=8.4e-07 Score=101.81 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=60.6
Q ss_pred EEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+... .+...|.+++.++.+ |++++++.+.+. +.+|.+...+|.+|.+-|+++|+++
T Consensus 101 Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~l 169 (391)
T TIGR01328 101 LISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCRD 169 (391)
T ss_pred EEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHH
Confidence 6666666644332 233356788888765 789999888654 3477777788999999999999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|+++|+++++|.|+
T Consensus 170 a~~~gi~livD~a~ 183 (391)
T TIGR01328 170 AHSQGVKVIVDNTF 183 (391)
T ss_pred HHHcCCEEEEECCC
Confidence 99999999999988
No 161
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.64 E-value=5.1e-07 Score=102.48 Aligned_cols=271 Identities=15% Similarity=0.163 Sum_probs=182.3
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH--
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM-- 525 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l-- 525 (891)
+.+.+++.+...++ +|+ +++|+|+++..++........ ++.+|+++..+|+++...+..
T Consensus 47 ~r~~la~~~g~~~~-~i~--~t~~~t~a~~~al~~~~~~~~----------------~~~~vv~~~~~~~s~~~~~~~~~ 107 (379)
T TIGR03402 47 AREQVAKLLGAEPD-EII--FTSGGTESDNTAIKSALAAQP----------------EKRHIITTAVEHPAVLSLCQHLE 107 (379)
T ss_pred HHHHHHHHhCCCCC-eEE--EeCcHHHHHHHHHHHHHHhcC----------------CCCeEEEcccccHHHHHHHHHHH
Confidence 33467777765544 566 788999999988877543210 123688999999998776643
Q ss_pred -cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCcc-EEEEecCCccc--------hhh-----hhcCC-----------
Q psy852 526 -AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP-FFVSTTLGTTS--------CYR-----KSQGI----------- 579 (891)
Q Consensus 526 -~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip-~~VvataGTT~--------c~~-----~ldGi----------- 579 (891)
.|++++.||.+.+|.+|+++|+++|++++. .+. ..+.+..|+.. |++ ++|++
T Consensus 108 ~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~--lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~ 185 (379)
T TIGR03402 108 KQGYKVTYLPVDEEGRLDLEELRAAITDDTA--LVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLK 185 (379)
T ss_pred HcCCEEEEEccCCCCcCCHHHHHHhcCCCcE--EEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcc
Confidence 588999999998999999999999976421 111 11223345544 444 24442
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccc-cccccc-chHHHHHHHHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIP-LSRRFR-SLKLWFVIRTYGL 656 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~-~SRr~~-aL~lW~~L~~lG~ 656 (891)
..+|++++++|| +++|.|+|++++|+...+.+.+ . .+.. ..... ++-.+. .+.+-.+++. ..
T Consensus 186 ~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~~p~~------~-g~~~------~~~~~~gt~~~~~~~~l~~al~~-~~ 250 (379)
T TIGR03402 186 EMNIDMLSLSGHK-LHGPKGVGALYIRKGTRFRPLL------R-GGHQ------ERGRRAGTENVPGIVGLGKAAEL-AT 250 (379)
T ss_pred cCCCCEEEEcHHH-cCCCCceEEEEECCCCCCCCcc------c-CCcc------CCCcCCCCccHHHHHHHHHHHHH-HH
Confidence 258999999999 6789999999998764332211 1 0000 00000 111111 1233444443 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc---eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR---LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~---~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+.+++..++..++++++.+.|++ ++++++..++. .++++|.+... ..+++...|.+.|+.+..++.+..
T Consensus 251 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gI~v~~g~~c~~ 323 (379)
T TIGR03402 251 EHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI-------EGEAILLLLDMEGICASSGSACTS 323 (379)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC-------CHHHHHHhhccCCEEEEchhhcCC
Confidence 56788888899999999999986 89999887543 46898988644 346788888888988766654321
Q ss_pred -------------------CeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 733 -------------------NDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 733 -------------------~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
...+ +|++++||++|||++++.|++++..
T Consensus 324 ~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 324 GSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred CCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 2467 9999999999999999999988743
No 162
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.64 E-value=8.7e-07 Score=107.21 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=79.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--C---Cccc-----HHHHHHHHHhhhhcCCcceEEEeecccCccccccC
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--K---NSLR-----GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN 213 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~---g~id-----~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp 213 (891)
.|++...+|-|+..++.+.|...+++++.- . |.|+ .+.++++|++.-.. +.|..+++|.. |--|.+-|
T Consensus 237 ~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~p-TYdG~~yd 314 (714)
T PRK15400 237 TVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYN 314 (714)
T ss_pred EEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECC-CCccEecC
Confidence 488999999999999999999999988653 2 3456 89999999875432 45778888888 77899999
Q ss_pred HHHHHHHHHHcCCceeeeccccCCccccCCC
Q psy852 214 LAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244 (891)
Q Consensus 214 l~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~ 244 (891)
+++|+++|+.++ +|+|-|||+++.|+|.+
T Consensus 315 ~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 315 TDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred HHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 999999999887 79999999998876543
No 163
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.62 E-value=2.3e-06 Score=97.09 Aligned_cols=173 Identities=10% Similarity=0.003 Sum_probs=106.1
Q ss_pred CCccEEEEcCcccCCcccccEEEEEeCCcc--chhhhccC---CCccccCCCCCccccCCccccccccc-chHHHHHHHH
Q psy852 580 EYADSFNVNVNKWLLTAFDSSCLWVADRYK--LTSALVVD---PLYLQHGHEGAIDYRHWGIPLSRRFR-SLKLWFVIRT 653 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g~G~llvR~~~~--L~~~l~~~---~~Yl~~~~e~~~~~~~~ti~~SRr~~-aL~lW~~L~~ 653 (891)
+.+|.+.+++|||++.|-|.++++++++.. +.+..... +.|+.-... .......+-..+=... .+.+-.+++.
T Consensus 174 ~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~-~~~~~~~~t~~tp~i~~i~~l~~al~~ 252 (361)
T TIGR01366 174 AETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTA-VDNSLKNQTYNTPAIATLALLAEQIDW 252 (361)
T ss_pred HHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHH-HhccccCCCCCCchHHHHHHHHHHHHH
Confidence 348999999999999997877777776532 11111000 112110000 0000000000111111 1356677888
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C--cee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 654 YGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V--RLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 654 lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~--~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
+-.+ |++.+.++..++++++.+.|++.+.++++.+ + .+. +.+|.+. . +.....+.+.|.+.|+....+.
T Consensus 253 l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~-~-----g~~~~~v~~~L~~~gI~i~~~~ 326 (361)
T TIGR01366 253 MNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV-D-----DIDAATVAKILRANGIVDTEPY 326 (361)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC-C-----ccCHHHHHHHHHHCCCeeccCc
Confidence 8777 6999999999999999999999987776532 2 121 2334442 2 2245678888988898753332
Q ss_pred cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..-+..++ ++.+.++|.+||++++++|++++
T Consensus 327 ~~l~~~~vRis~~~~~t~~di~~l~~al~~~~ 358 (361)
T TIGR01366 327 RKLGRNQLRVAMFPAIDPDDVEALTECVDWVV 358 (361)
T ss_pred cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 11123456 99999999999999999999875
No 164
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.62 E-value=2.2e-06 Score=98.09 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=59.8
Q ss_pred EEEecCCCChHHHHHHH-H---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM-M---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+. . .+.++..++. .|++++++++++. +-+|.+...+|.+|.+-|+++|.+
T Consensus 102 ~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~ 170 (386)
T PRK06767 102 HIICSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIR 170 (386)
T ss_pred EEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHH
Confidence 37777777766655442 2 2344544443 3789999888653 347788888999999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|.||
T Consensus 171 la~~~g~~vivD~a~ 185 (386)
T PRK06767 171 VAKRNGLLVIVDNTF 185 (386)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999888888888
No 165
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.61 E-value=2e-06 Score=99.16 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=116.7
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+...... +...+.+++.++. .|+++|++.+++. +-+|.+..-+|.+|.+.|+++|+++
T Consensus 102 Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~l 170 (405)
T PRK08776 102 LVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEA 170 (405)
T ss_pred EEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHH
Confidence 56666666553222 2334567777654 3889999888643 3467777888999999999999999
Q ss_pred HHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhh
Q psy852 221 AKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGV 300 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (891)
|+++|+++.+|.+|.....
T Consensus 171 a~~~gi~vIvD~a~a~~~~------------------------------------------------------------- 189 (405)
T PRK08776 171 AHKVGALTVVDNTFLSPAL------------------------------------------------------------- 189 (405)
T ss_pred HHHcCCEEEEECCCccccc-------------------------------------------------------------
Confidence 9999998889988821100
Q ss_pred HHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--c
Q psy852 301 LLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD--S 378 (891)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~--~ 378 (891)
. ++. . ..+|-+..++||++.+|-+ .
T Consensus 190 ----------------------------------------------~----~pl-~--~gaDivv~S~tK~l~g~~~~~~ 216 (405)
T PRK08776 190 ----------------------------------------------Q----KPL-E--FGADLVLHSTTKYINGHSDVVG 216 (405)
T ss_pred ----------------------------------------------C----Ccc-c--ccCCEEEecCceeecCCCCceE
Confidence 0 000 0 1368899999999998864 5
Q ss_pred eEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhcc
Q psy852 379 SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRR 458 (891)
Q Consensus 379 g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~ 458 (891)
|+++.+++.... .+.....+ .+. ...++..|..+ .|.+.+..++++..+++..+++.|++
T Consensus 217 G~vv~~~~~l~~-~l~~~~~~-------------~g~----~~s~~~a~l~~--~gl~tl~~r~~~~~~na~~la~~L~~ 276 (405)
T PRK08776 217 GAVVARDAELHQ-QLVWWANA-------------LGL----TGSPFDAFLTL--RGLRTLDARLRVHQENADAIAALLDG 276 (405)
T ss_pred EEEEeCCHHHHH-HHHHHHHh-------------cCC----CCCHHHHHHHH--hhhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 777776543222 11100000 011 12456677766 46677888999999999999999999
Q ss_pred CCcccc
Q psy852 459 DPRFEI 464 (891)
Q Consensus 459 ~~~~eV 464 (891)
+|.++-
T Consensus 277 ~p~v~~ 282 (405)
T PRK08776 277 HAAVNQ 282 (405)
T ss_pred CCCeeE
Confidence 987653
No 166
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.60 E-value=6e-06 Score=94.08 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=150.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCcCHHHHH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLR 547 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~mD~~~Le 547 (891)
.++|++++..++.+..- .+.-.|+++...|.+...++...|.+++.+++++ ++.+|+++|+
T Consensus 50 ~~sgt~al~~~l~al~~------------------~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~ 111 (380)
T TIGR03588 50 FNSATSALHIACLALGV------------------GPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALE 111 (380)
T ss_pred EcCHHHHHHHHHHHcCC------------------CCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHH
Confidence 34678887777665310 0122488888889998888888899999999964 6889999999
Q ss_pred HHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcCC-----CCccEEEEcCc--ccCCccc
Q psy852 548 QVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQGI-----EYADSFNVNVN--KWLLTAF 597 (891)
Q Consensus 548 ~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldGi-----~~aDSIs~d~H--K~L~~P~ 597 (891)
++|++.......-++++...|+.. |+++ .+|. +..|...+|+| ||+.+|
T Consensus 112 ~~i~~~~~~~t~~v~~~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~- 190 (380)
T TIGR03588 112 KKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA- 190 (380)
T ss_pred HHhhcccCCCceEEEEeCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCccccc-
Confidence 999842111112333444567654 4331 1110 14599999998 888776
Q ss_pred ccEEEEEeCCccchhhhccCCCccccCC-------CC--CccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 598 DSSCLWVADRYKLTSALVVDPLYLQHGH-------EG--AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 598 g~G~llvR~~~~L~~~l~~~~~Yl~~~~-------e~--~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
.-|++++.+++.....-........... .. .+.....+... +...+. +++-....+.+.+++++..+
T Consensus 191 ~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~--~m~~l~--aa~g~~qL~~l~~~~~~r~~ 266 (380)
T TIGR03588 191 EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNY--RMTDIQ--AALGLSQLKKLDRFVAKRRE 266 (380)
T ss_pred CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeecccccc--CccHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3455666665433221110000000000 00 00000111111 112221 11111224567889999999
Q ss_pred HHHHHHHHhccCCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---ecc----cc---C-
Q psy852 669 LAKLFEGKVRRDPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PAS----QE---Q- 732 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~----~~---g- 732 (891)
+++++.+.|.+++++++..++. ..+..+++.... ......+.+.|.++|+.... +.. .. .
T Consensus 267 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~ 342 (380)
T TIGR03588 267 IAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF----GCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGD 342 (380)
T ss_pred HHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC----CCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCc
Confidence 9999999999998877654321 123333343210 12456888889888875221 100 00 0
Q ss_pred ----------CeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 733 ----------NDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 733 ----------~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..++ +.+++..|++||++++++|+++
T Consensus 343 ~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 343 GDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred CCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 1345 6678889999999999999875
No 167
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.60 E-value=8.8e-07 Score=101.60 Aligned_cols=80 Identities=8% Similarity=0.056 Sum_probs=64.2
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++..+|.+.... +...|.+++.|+.+ |++++++++++.+ -+|+++..+|.+|.+.|+++|.++
T Consensus 95 Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~t------klV~l~~p~NptG~~~dl~~I~~l 163 (390)
T PRK08064 95 VLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPNT------KLFYVETPSNPLLKVTDIRGVVKL 163 (390)
T ss_pred EEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCcEeccHHHHHHH
Confidence 77777778755433 33457788888864 6888988886543 488889999999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|+||+
T Consensus 164 a~~~g~~vvvD~a~~ 178 (390)
T PRK08064 164 AKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999999883
No 168
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=98.60 E-value=3.7e-06 Score=95.61 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=70.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|++.+.+|++...++.+.+.+++.++. +|+++|++.+++....+..+.+|+.....+.+|.+.|+++|.++|++
T Consensus 128 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~ 202 (397)
T PRK06939 128 AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADK 202 (397)
T ss_pred EEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence 4778889999999888777777777754 58999999887643223345677766677889999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+++++++|.+|+
T Consensus 203 ~~~~li~De~~~ 214 (397)
T PRK06939 203 YDALVMVDDSHA 214 (397)
T ss_pred hCCEEEEECccc
Confidence 999999999993
No 169
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.60 E-value=6.9e-06 Score=91.57 Aligned_cols=219 Identities=7% Similarity=-0.004 Sum_probs=131.6
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CYR 574 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~~ 574 (891)
.|+++...|.++..++...|.+++.++. +|+++|+++|++.... ..+.+|+. ..|+.. |++
T Consensus 87 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~-~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~ 160 (349)
T cd06454 87 LIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRP-YGKKLIVTEGVYSMDGDIAPLPELVDLAKK 160 (349)
T ss_pred EEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhcc-CCCeEEEEeccccCCCCccCHHHHHHHHHH
Confidence 4777888999998888888888887763 5889999999864311 12223322 234433 433
Q ss_pred h-----hcC--------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 575 K-----SQG--------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 575 ~-----ldG--------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
+ +|+ ...+|.+..++||+++.|. |+++. ++..+.........|..
T Consensus 161 ~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g--G~i~~-~~~~~~~~~~~~~~~~~------- 230 (349)
T cd06454 161 YGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG--GYIAG-SKELIDYLRSYARGFIF------- 230 (349)
T ss_pred cCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC--CEEEC-CHHHHHHHHHhchhhhc-------
Confidence 1 111 1246888999999998643 55544 33333221111111110
Q ss_pred cccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhh
Q psy852 630 DYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 630 ~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ 708 (891)
.++- ....+.+..+++.+-. +.+..++..++++++.+.|++. +++++.++...+.++.+.+ +.
T Consensus 231 -------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~------~~ 294 (349)
T cd06454 231 -------STSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDD------PA 294 (349)
T ss_pred -------cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCC------hH
Confidence 0011 1112233344444322 4566778889999999999876 6777665555555565431 22
Q ss_pred hHHHHHHHHHhCCcEEEeecc---ccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPAS---QEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~---~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..+++.+.|.++|+....... ..+...+ ++++.+++++||+++++.|+++
T Consensus 295 ~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 295 KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 457889999888987543211 1223566 9999999999999999999864
No 170
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.60 E-value=1.5e-06 Score=101.08 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=62.8
Q ss_pred EEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+....+. ..+.+++.++ |. -|++++++++++. +.+|++...+|.+|.+-|+++|+++
T Consensus 111 Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~l 180 (436)
T PRK07812 111 IVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAEV 180 (436)
T ss_pred EEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHHH
Confidence 6777777877665442 2455666664 33 2899999888654 3588888899999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.||+|++
T Consensus 181 a~~~gi~liVD~t~a 195 (436)
T PRK07812 181 AHEAGVPLIVDNTIA 195 (436)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999883
No 171
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.60 E-value=3.8e-06 Score=96.07 Aligned_cols=246 Identities=11% Similarity=0.022 Sum_probs=136.7
Q ss_pred CcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-----HHHcCceEEEecC--CC-CCCcC
Q psy852 471 SASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-----AMMAFVRLKILEP--DD-KNSLR 542 (891)
Q Consensus 471 ggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-----a~l~gv~v~~Vp~--d~-~G~mD 542 (891)
+|++++..++.+.- + +.-.|+++...|.+.... +...|.+++.++. +. ++.+|
T Consensus 89 sgt~a~~~~l~~l~----~---------------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id 149 (402)
T cd00378 89 SGSQANLAVYFALL----E---------------PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLID 149 (402)
T ss_pred CcHHHHHHHHHHhc----C---------------CCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcC
Confidence 56888887666541 1 111355555555433221 3445666666665 32 69999
Q ss_pred HHHHHHHHHhhhhcCCccEEE-EecCCccc--------hhhh-----hcC---------------CCCccEEEEcCcccC
Q psy852 543 GATLRQVMQQDETMGYIPFFV-STTLGTTS--------CYRK-----SQG---------------IEYADSFNVNVNKWL 593 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~V-vataGTT~--------c~~~-----ldG---------------i~~aDSIs~d~HK~L 593 (891)
+++|++++.+.. ...+++ ....|+.. |+++ +|+ +..+|.+..++|||+
T Consensus 150 ~~~l~~~i~~~~---~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l 226 (402)
T cd00378 150 YDALEKMALEFK---PKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTL 226 (402)
T ss_pred HHHHHHHHHhCC---CCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCC
Confidence 999999996421 112222 22334432 3331 222 124698999999999
Q ss_pred CcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 594 LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 594 ~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
.+|.+ |++++.++............+... + +-......+..++..+-..++.+..++..++++++
T Consensus 227 ~G~~g-g~i~~~~~~~~~~l~~~~~~~~~~-----------~---~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 291 (402)
T cd00378 227 RGPRG-GLILTRKGELAKKINSAVFPGLQG-----------G---PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKAL 291 (402)
T ss_pred CCCCc-eEEEeccHHHHHHHHHHhCccccC-----------C---chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77765 555555433332211111111100 0 00001111222233333336677888899999999
Q ss_pred HHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---eccc---cCCeEE-EEecC----
Q psy852 674 EGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PASQ---EQNDEV-FELQE---- 741 (891)
Q Consensus 674 ~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~~---~g~~~l-~sv~~---- 741 (891)
.+.|++. +++++. +...+.+++++.+.. .....+.+.|.+.|+.... +... .+...+ ++++.
T Consensus 292 ~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~-----~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~ 365 (402)
T cd00378 292 AEALKER-GFKVVSGGTDNHLVLVDLRPKG-----ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTR 365 (402)
T ss_pred HHHHHhC-CCeEeecCCCCeEEEEeCCccC-----CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHh
Confidence 9999886 788764 345678888886331 1234566667778877432 1111 123345 77655
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~ 759 (891)
..+++||+.+++.|+++.
T Consensus 366 ~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 366 GMGEEEMEEIADFIARAL 383 (402)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 347999999999999865
No 172
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=98.60 E-value=9.9e-07 Score=100.60 Aligned_cols=281 Identities=16% Similarity=0.174 Sum_probs=149.0
Q ss_pred cCCCCCCH-HHHHHHHHHHhcCCCC-----Cc-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q psy852 23 YFPSGNSY-PSVLADMLSDAIGCIG-----FS-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMN 95 (891)
Q Consensus 23 ~~~~~~~~-~~~~~~~l~~~~n~~~-----~~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~ 95 (891)
-.++-+.. |.+...+-+.+.|-.. .. |.......++|..+.+...+|||.+++.++ .|
T Consensus 25 LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~---------------an 89 (399)
T PF00464_consen 25 LIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWY---------------AN 89 (399)
T ss_dssp -CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEE---------------EE
T ss_pred ccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccce---------------EE
Confidence 34444433 4444444444444332 22 234577889999999999999999855321 00
Q ss_pred ccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEe-cCCCChHHHHHH-H-----H-cCCeEE
Q psy852 96 IEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYC-SKEAHSCVEKAA-M-----M-AFVRLK 167 (891)
Q Consensus 96 ~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~-S~~~H~Sv~kaa-~-----~-~~~~v~ 167 (891)
+. ..+|+.++......+.+.. .+++.+- +.-.|.|--... . . ...+++
T Consensus 90 ----vq-------p~SGs~An~av~~aLl~pG-------------D~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~ 145 (399)
T PF00464_consen 90 ----VQ-------PHSGSQANLAVYMALLKPG-------------DTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESV 145 (399)
T ss_dssp --------------SSHHHHHHHHHHHHT-TT--------------EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEE
T ss_pred ----ee-------cCCchHHHHHHHHHHHhhc-------------CcEEecChhhcccccccccccccccccccceEEEE
Confidence 11 1466544333333332211 1111221 233465543222 1 1 134777
Q ss_pred EEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCc
Q psy852 168 ILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRP 246 (891)
Q Consensus 168 ~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~ 246 (891)
..++| +++.||.+++++.+++.+ |-+|++ |.+..--.-|++++.+||++.|..+++|+|+=
T Consensus 146 ~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~~~~d~~~~reIad~vga~l~~D~sH~----------- 207 (399)
T PF00464_consen 146 PYPVDPDTGLIDYDELEKLAKEHK-----PKLIIC--GASSYPRPIDFKRFREIADEVGAYLMADISHI----------- 207 (399)
T ss_dssp EEEB-TTTSSB-HHHHHHHHHHH-------SEEEE--E-SSTSS---HHHHHHHHHHTT-EEEEE-TTT-----------
T ss_pred eeeeecCCCeECHHHHHHHHhhcC-----CCEEEE--CchhccCccCHHHHHHHHHhcCcEEEeccccc-----------
Confidence 88998 789999999999998764 656654 44445566889999999999999999999880
Q ss_pred cCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccc
Q psy852 247 FMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSY 326 (891)
Q Consensus 247 ~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (891)
.|+
T Consensus 208 --~GL--------------------------------------------------------------------------- 210 (399)
T PF00464_consen 208 --AGL--------------------------------------------------------------------------- 210 (399)
T ss_dssp --HHH---------------------------------------------------------------------------
T ss_pred --ccc---------------------------------------------------------------------------
Confidence 010
Q ss_pred cccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcc--cCccccCCCC
Q psy852 327 RDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDPLYLQHGH 404 (891)
Q Consensus 327 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~--~~~~y~~~~~ 404 (891)
-+++.+-+ -+++||.++.+.||.+.+|-+ |+++++...+-...-. .++.|-
T Consensus 211 --------------Ia~g~~~~--------P~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~---- 263 (399)
T PF00464_consen 211 --------------IAGGLFPN--------PFPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELA---- 263 (399)
T ss_dssp --------------HHTTSS----------GCCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHH----
T ss_pred --------------eehheecC--------ccccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHH----
Confidence 01111111 134689999999999999987 8888883221100000 000000
Q ss_pred CCcccc-cccccCCCCCh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 405 EGAIDY-RHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 405 ~~~~~~-~~~~~~~sr~~-~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
..++. .-.+++++-.. ...++-.+++..-...+.++.++.+++|+.|++.|.+ .|++|+.
T Consensus 264 -~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~-~G~~v~~ 325 (399)
T PF00464_consen 264 -EKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQE-RGFKVVT 325 (399)
T ss_dssp -HHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TT-EEGG
T ss_pred -HHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEE
Confidence 00110 01122333333 3445667777777778899999999999999999988 5889884
No 173
>KOG1368|consensus
Probab=98.60 E-value=9.1e-08 Score=102.23 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=64.6
Q ss_pred EEecCCCChHHHHHH---HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcce--EEEeecccCccc-cccCHHH--
Q psy852 145 AYCSKEAHSCVEKAA---MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPF--FVSTTLGTTSCC-SFDNLAE-- 216 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa---~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~--~V~~t~Gtt~~G-avDpl~~-- 216 (891)
|++...+|--...+. .+++..++.|...++|.||++++|+++....-.-+-|. +|+.--=-+.+| .+-||++
T Consensus 99 ii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~ 178 (384)
T KOG1368|consen 99 IIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELD 178 (384)
T ss_pred EEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHH
Confidence 777788885544433 46788999999999999999999999985432222333 444432223335 8888775
Q ss_pred -HHHHHHHcCCceeeeccc
Q psy852 217 -IGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 217 -I~~i~~~~~~~lHvDaA~ 234 (891)
|.++|+++|+.+|+|||-
T Consensus 179 ~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 179 RVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred HHHHHHhccCCeeecchhh
Confidence 556899999999999997
No 174
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.60 E-value=1e-06 Score=102.70 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=60.5
Q ss_pred EEecCCCCh------HHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc--cc--cccCH
Q psy852 145 AYCSKEAHS------CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--CC--SFDNL 214 (891)
Q Consensus 145 v~~S~~~H~------Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~--~G--avDpl 214 (891)
|++|..+|. ++...+...|.+++.++++ +..|+++++++|.+.+ .+|..+.-+|. .| .+-|+
T Consensus 163 VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T------~lv~~~h~sN~~~~G~~~~~dl 234 (454)
T TIGR00474 163 VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENT------ALLLKVHTSNYRIVGFTEEVSI 234 (454)
T ss_pred EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCC------EEEEEEccCcccccCCCCCCCH
Confidence 788877663 3433344467788888654 4568999999997654 35555555554 46 57899
Q ss_pred HHHHHHHHHcCCceeeecccc
Q psy852 215 AEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|+++|+++|+.+.+|++.|
T Consensus 235 ~~I~~la~~~g~~vivD~~sG 255 (454)
T TIGR00474 235 AELVALGREHGLPVMEDLGSG 255 (454)
T ss_pred HHHHHHHHHcCCeEEEECCCc
Confidence 999999999999999999864
No 175
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.59 E-value=1.5e-06 Score=99.59 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=61.9
Q ss_pred EEEecCCCChHHHHHHHH---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
.|+++...|.+....+.. .+.+++.++ +|+++|++.+++. .+-+|.+...+|.+|.+-|+++|+++
T Consensus 94 ~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~dl~~I~~l 162 (385)
T PRK08574 94 RVVLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVIDVPEVAKA 162 (385)
T ss_pred EEEEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecCHHHHHHH
Confidence 377888889888776632 345665553 3578888888651 13466678888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 163 a~~~gi~livD~t~a 177 (385)
T PRK08574 163 AKELGAILVVDNTFA 177 (385)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999999883
No 176
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.58 E-value=3.5e-06 Score=93.90 Aligned_cols=262 Identities=14% Similarity=0.141 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhcC-----CCCCc-cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy852 31 PSVLADMLSDAIG-----CIGFS-WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN 104 (891)
Q Consensus 31 ~~~~~~~l~~~~n-----~~~~~-~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~ 104 (891)
+++...+-+.+.| -++-. |..+-...++|..+++...+|||.......
T Consensus 40 ~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQ-------------------------- 93 (413)
T COG0112 40 PAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQ-------------------------- 93 (413)
T ss_pred HHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccC--------------------------
Confidence 4555444444443 23333 346778899999999999999999754211
Q ss_pred CCCcccchhHHHHHHHHHHHHhcccc---CCccccccccCCeEEEecCCCChHHHHHHHHcC--CeEEEEecC-CCCccc
Q psy852 105 QPQSLGGGVIQSVQNIIVLTRGQKKI---HPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF--VRLKILEPD-DKNSLR 178 (891)
Q Consensus 105 ~~~~~~gGt~~~~~~~~~~ar~~~~~---~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~--~~v~~V~~d-~~g~id 178 (891)
-.+|+..|.+....+ -+.+. ...+..|. -.+|-+ ...+.| .+++.-++| +++.||
T Consensus 94 ----PhSGs~AN~av~~Al--l~pGDtimgm~l~~GG----------HltHg~---~v~~sG~~~~~v~Y~vd~et~~ID 154 (413)
T COG0112 94 ----PHSGSQANQAVYLAL--LQPGDTIMGLDLSHGG----------HLTHGS---PVNFSGKLFNVVSYGVDPETGLID 154 (413)
T ss_pred ----CCCchHHHHHHHHHH--cCCCCeEecccCCCCC----------cccCCC---CCCccceeEEeEecccccccCccC
Confidence 134553333222222 22110 01111111 112321 111111 467777899 569999
Q ss_pred HHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCC
Q psy852 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLH 258 (891)
Q Consensus 179 ~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~ 258 (891)
.|++++.+.+.+ |-+|+ +|.+..--.-|++++.+||++.|.++-+|.|+ +.|+
T Consensus 155 yD~~~k~a~e~k-----PK~ii--~G~SaY~r~id~~~~reIad~VGA~L~~DmAH-------------iaGL------- 207 (413)
T COG0112 155 YDEVEKLAKEVK-----PKLII--AGGSAYSRPIDFKRFREIADEVGAYLMVDMAH-------------VAGL------- 207 (413)
T ss_pred HHHHHHHHHHhC-----CCEEE--ECccccccccCHHHHHHHHHHhCceEEehHHH-------------HHHH-------
Confidence 999999998875 66655 47777788889999999999999999999988 1111
Q ss_pred CCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEee
Q psy852 259 LSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVD 338 (891)
Q Consensus 259 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 338 (891)
T Consensus 208 -------------------------------------------------------------------------------- 207 (413)
T COG0112 208 -------------------------------------------------------------------------------- 207 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCC
Q psy852 339 GAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 418 (891)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~s 418 (891)
-+++.+. +-+++||-+|-+.||.+.+|-+ |++++++.+..+. + +..-. +++++.
T Consensus 208 --VA~G~~p--------~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kk-i--n~aVF------------Pg~qgg 261 (413)
T COG0112 208 --IAGGVHP--------NPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKK-I--NSAVF------------PGLQGG 261 (413)
T ss_pred --HhcccCC--------CCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHH-h--hhhcC------------CccCCC
Confidence 0111111 2356799999999999999998 8888887322221 1 11111 122222
Q ss_pred CChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchh
Q psy852 419 RRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASEC 475 (891)
Q Consensus 419 r~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsea 475 (891)
-... ..+.-.+++---.-+|.+..++.+++|+.|++.|.+ .|+++++ |+|+.
T Consensus 262 pl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~-~G~~vvs----GgTdn 314 (413)
T COG0112 262 PLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE-RGFKVVS----GGTDN 314 (413)
T ss_pred hHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH-cCCeEec----CCccc
Confidence 2222 334556677777889999999999999999999987 7888884 66654
No 177
>PLN02483 serine palmitoyltransferase
Probab=98.58 E-value=7.9e-06 Score=96.49 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=67.9
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcC-------CcceEEEeecccCccccccCHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG-------YIPFFVSTTLGTTSCCSFDNLAE 216 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g-------~~p~~V~~t~Gtt~~GavDpl~~ 216 (891)
.|++.+.+|.|+..++.+.|.+++.++.+ |+++|++.+++....+ ...++|++....+.+|.+.|+++
T Consensus 187 ~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~ 261 (489)
T PLN02483 187 LIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPE 261 (489)
T ss_pred EEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHH
Confidence 47888999999999998888899999865 5677877776432211 11235555555588999999999
Q ss_pred HHHHHHHcCCceeeecccc
Q psy852 217 IGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 217 I~~i~~~~~~~lHvDaA~G 235 (891)
|+++|++|++++.+|.|++
T Consensus 262 I~~la~~~~~~livDEa~s 280 (489)
T PLN02483 262 IVAVCKKYKAYVYLDEAHS 280 (489)
T ss_pred HHHHHHHcCCEEEEECcCc
Confidence 9999999999999999994
No 178
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.58 E-value=2.6e-06 Score=97.67 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=61.6
Q ss_pred EEecCCCChHHHHHH-HH---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA-MM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-~~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+....+ .. .+.+++.++. .|+++|++.+.+. +-+|.+...+|.+|.+.|+++|+++
T Consensus 103 Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~l 171 (388)
T PRK07811 103 IVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAEL 171 (388)
T ss_pred EEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHHH
Confidence 777777877655444 22 2456666554 4899999988664 3477788888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 172 a~~~gi~lIvD~a~a 186 (388)
T PRK07811 172 AHDAGAKVVVDNTFA 186 (388)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999998883
No 179
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.57 E-value=4.8e-06 Score=95.88 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=67.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.|+..++...+.++..++.+ |.++|++.++.... ..+.+|+++..+|.+|.+-|+++|.++|++
T Consensus 134 ~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~ 206 (410)
T PRK13392 134 VILSDALNHASMIEGIRRSGAEKQVFRHN-----DLADLEEQLASVDP--DRPKLIAFESVYSMDGDIAPIEAICDLADR 206 (410)
T ss_pred EEEEehhhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhccC--CCCEEEEEeCCCCCCcccccHHHHHHHHHH
Confidence 57777779999988887777777766532 56677777754321 235688888899999999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+++++.+|.||+
T Consensus 207 ~~~~livDea~~ 218 (410)
T PRK13392 207 YNALTYVDEVHA 218 (410)
T ss_pred cCCEEEEECCcc
Confidence 999999999995
No 180
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.57 E-value=2e-06 Score=98.52 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=61.6
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+ . ..+.+++.++. .|++++++++.+. +-+|.++..+|.+|.+-|+++|++
T Consensus 94 ~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~ 162 (388)
T PRK08861 94 LIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQ 162 (388)
T ss_pred EEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 3777777777655443 2 23456666642 4889999888654 347888888999999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++.+|.||+
T Consensus 163 la~~~gi~vIvDea~~ 178 (388)
T PRK08861 163 KAKAVGALVAVDNTFL 178 (388)
T ss_pred HHHHcCCEEEEECCcc
Confidence 9999998888888883
No 181
>PRK05968 hypothetical protein; Provisional
Probab=98.56 E-value=3.2e-06 Score=96.92 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=60.3
Q ss_pred EEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.. +.+...|.+++.++.+ |++++++.+. . +-+|.+..-|+.++.+.|+++|+++
T Consensus 105 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-~------tklV~ie~pt~~~~~~~dl~~i~~l 172 (389)
T PRK05968 105 IVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKALP-G------AKLLYLESPTSWVFELQDVAALAAL 172 (389)
T ss_pred EEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhcc-c------CCEEEEECCCCCCCcHHHHHHHHHH
Confidence 677777777653 3334457788888654 8899988872 2 2366667788889999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+.+++|+|++
T Consensus 173 a~~~gi~vivD~a~a 187 (389)
T PRK05968 173 AKRHGVVTMIDNSWA 187 (389)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999883
No 182
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.56 E-value=1.5e-06 Score=99.61 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+. -.|+++.+++. .|.++++++|++++ -+|.+...+|.+|.+-||++|++
T Consensus 103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~T------rlV~~EtpsNp~~~v~DI~~Ia~ 171 (395)
T PRK08114 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPNT------KVVFLESPGSITMEVHDVPAIVA 171 (395)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCCc------eEEEEECCCCCCCEeecHHHHHH
Confidence 37888888888876652 24678888764 36788999887653 58999999999999999999999
Q ss_pred HHHHcC--Cceeeecccc
Q psy852 220 VAKEFD--VWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~--~~lHvDaA~G 235 (891)
+|++++ +.+.||++|+
T Consensus 172 ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 172 AVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 999984 8888888883
No 183
>PRK09064 5-aminolevulinate synthase; Validated
Probab=98.54 E-value=7.8e-06 Score=93.92 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=67.1
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.+|+.....|.|+..++...+.++..++. .|+++|++.++... ...+.+|++...++.+|.+.|+++|.++|+
T Consensus 133 ~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~ 205 (407)
T PRK09064 133 CVIFSDELNHASMIEGIRRSRCEKHIFRH-----NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAPIAEICDLAD 205 (407)
T ss_pred CEEEEeCcchHHHHHHHHHcCCcEEEECC-----CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence 35666677899998887766666655553 37889998886431 123567888888999999999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++++|.|++
T Consensus 206 ~~~~~livDEa~~ 218 (407)
T PRK09064 206 KYNALTYLDEVHA 218 (407)
T ss_pred HcCCEEEEECCCc
Confidence 9999999999995
No 184
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.53 E-value=2.7e-06 Score=97.84 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+....+ ...|.+++.++. .|+++++++|++. +-+|.+..-+|.+|.+-|+++|++
T Consensus 105 ~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~ 173 (398)
T PRK08249 105 RVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAA 173 (398)
T ss_pred EEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHH
Confidence 3788888888764433 234666666553 5899999988754 347777788899999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++++|.||+
T Consensus 174 la~~~gi~livD~t~a 189 (398)
T PRK08249 174 AAKKVGALVVVDNTFA 189 (398)
T ss_pred HHHHcCCEEEEECCcC
Confidence 9999999999999984
No 185
>PRK05939 hypothetical protein; Provisional
Probab=98.53 E-value=3.4e-06 Score=97.07 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=63.4
Q ss_pred EEecCCCC---hHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 145 AYCSKEAH---SCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H---~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
|+++...| .++...+...|.+++.++++ |+++|++.+++. +.+|++...+|.+|.+.|+++|+++|
T Consensus 89 Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~la 157 (397)
T PRK05939 89 LVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGALC 157 (397)
T ss_pred EEECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHHHH
Confidence 66666654 34445554567788888763 899999988654 35778888999999999999999999
Q ss_pred HHcCCceeeecccc
Q psy852 222 KEFDVWLHVDGAYA 235 (891)
Q Consensus 222 ~~~~~~lHvDaA~G 235 (891)
+++|+++++|++|+
T Consensus 158 ~~~gi~livD~t~a 171 (397)
T PRK05939 158 RERGLLYVVDNTMT 171 (397)
T ss_pred HHcCCEEEEECCcc
Confidence 99999999999883
No 186
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.52 E-value=5.1e-06 Score=95.76 Aligned_cols=80 Identities=8% Similarity=0.005 Sum_probs=62.2
Q ss_pred EEEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+.. +.+...|.+++.++.+ |++++++++++.+ -+|.+...+|.+|.+-|+++|++
T Consensus 111 ~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~t------klV~~esp~Nptg~v~dl~~I~~ 179 (403)
T PRK07810 111 RLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSVPT------QAVFFETPSNPMQSLVDIAAVSE 179 (403)
T ss_pred EEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCeecCHHHHHH
Confidence 3777766663332 2333457788888743 8999999987653 47888889999999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++.||.||
T Consensus 180 la~~~g~~vivD~a~ 194 (403)
T PRK07810 180 LAHAAGAKVVLDNVF 194 (403)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
No 187
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=98.51 E-value=7.4e-06 Score=94.83 Aligned_cols=245 Identities=9% Similarity=0.045 Sum_probs=139.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-HHHHHHH--cCceE--EEecCCC-CCCcC
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC-VEKAAMM--AFVRL--KILEPDD-KNSLR 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S-v~Kaa~l--~gv~v--~~Vp~d~-~G~mD 542 (891)
.++|+.+|..++.+. .+ +.-.|+++...|.+ +...+.. .+..+ +..+.|. .+.+|
T Consensus 96 ~~SG~~A~~~~l~al----~~---------------~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 156 (416)
T PRK13034 96 PHSGSQANGAVYLAL----LK---------------PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLID 156 (416)
T ss_pred cCCcHHHHHHHHHHh----cC---------------CCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcC
Confidence 457788888777663 11 22358888888877 3333332 12222 3444443 47799
Q ss_pred HHHHHHHHHhhhhcCCccEEEEec---CCccc--------hhhh-----hcC---------------CCCccEEEEcCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVSTT---LGTTS--------CYRK-----SQG---------------IEYADSFNVNVNK 591 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~--------c~~~-----ldG---------------i~~aDSIs~d~HK 591 (891)
+++|++.++... +-+|+.+ .|... |+++ +|+ +..+|.++++.||
T Consensus 157 ~~~le~~l~~~~-----~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K 231 (416)
T PRK13034 157 YDEVEELAKEHK-----PKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHK 231 (416)
T ss_pred HHHHHHHHhhcC-----CeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcc
Confidence 999999986521 2223322 23221 3331 221 2568999999999
Q ss_pred cCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy852 592 WLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELA 670 (891)
Q Consensus 592 ~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA 670 (891)
|+.+|.| |+++..++. +...+.. ++.+ +...+... ....+...+...-..+..+..++..+++
T Consensus 232 ~l~g~~G-G~v~~~~~~-~~~~~~~---~~~~-----------~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a 295 (416)
T PRK13034 232 TLRGPRG-GMILTNDEE-IAKKINS---AVFP-----------GLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANA 295 (416)
T ss_pred cCCCCCC-eEEEECcHH-HHHHHHh---hcCC-----------cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9988886 555554442 2111110 0111 00111111 1111222222222223445678899999
Q ss_pred HHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEee---cccc---CCeEE-EEecC-
Q psy852 671 KLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP---ASQE---QNDEV-FELQE- 741 (891)
Q Consensus 671 ~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~---s~~~---g~~~l-~sv~~- 741 (891)
++|.++|++. ++.++.+ .+++++.+.+... +.....+.+.|.+.|+..... .... ....+ ++++.
T Consensus 296 ~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~-----~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~ 369 (416)
T PRK13034 296 QALAEVLKER-GYDLVSGGTDNHLLLVDLRPK-----GLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAG 369 (416)
T ss_pred HHHHHHHHHc-CCEeccCCCCCcEEEEEcCCC-----CCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHH
Confidence 9999999887 8888753 4677777776533 224456668888899874321 0000 12345 77665
Q ss_pred ---CCCHHHHHHHHHHHHHHH
Q psy852 742 ---RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ---~tT~edId~li~~L~ei~ 759 (891)
..+++||+++++.|++++
T Consensus 370 t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHHH
Confidence 667999999999999886
No 188
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.51 E-value=3.8e-06 Score=96.84 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEecCCCChHHHH----HHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~k----aa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+... .+...|.+++.|+++ |+++|++++++. +-+|.+...+|.+|.+-|+++|+++
T Consensus 107 Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~l 175 (403)
T PRK07503 107 VIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAEI 175 (403)
T ss_pred EEEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHHH
Confidence 6666666644332 233356788888764 789999988654 3366667789999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 176 a~~~gi~lIvD~a~a 190 (403)
T PRK07503 176 AHGAGAKVVVDNTYC 190 (403)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999883
No 189
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.51 E-value=4.1e-06 Score=95.33 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=180.3
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH---HcC
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM---MAF 527 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~---l~g 527 (891)
.+++.+...+.-+|+ +++|++|++..++.+.......+ .++..|+++..+|+++..++. ..|
T Consensus 50 ~~~~~~~~~~~~~i~--~t~g~teal~~~~~~~~~~~~~~-------------~~~~~vi~~~~e~ps~~~~~~~~~~~G 114 (382)
T TIGR03403 50 KLYKGINARDLDDII--ITSCATESNNWVLKGVYFDEILK-------------GGKNHIITTEVEHPAVRATCAFLESLG 114 (382)
T ss_pred HHHHHcCcCCCCeEE--EeCCHHHHHHHHHHHHHHhhccc-------------CCCCEEEEcCCccHHHHHHHHHHHHCC
Confidence 444455542222666 78899999998877653211100 112369999999999888764 368
Q ss_pred ceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC------------CC
Q psy852 528 VRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI------------EY 581 (891)
Q Consensus 528 v~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi------------~~ 581 (891)
++++.||++++|.+|+++|++++++++. .+ ...+.+..|+.. |++ ++|++ .+
T Consensus 115 ~~v~~v~~~~~g~~d~~~l~~~i~~~t~--lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~ 192 (382)
T TIGR03403 115 VEVTYLPINEQGTITAEQVREAITEKTA--LVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAG 192 (382)
T ss_pred CEEEEEecCCCCCCCHHHHHHhcccCCe--EEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccC
Confidence 8999999999999999999999976431 11 111234566654 333 12321 35
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc-hHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS-LKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a-L~lW~~L~~lG~~G~~ 660 (891)
+|++++++||| ++|.|+|++++|+...+.+.+... .++. . ... ++-.+.+ +.+..+++.+ .+.++
T Consensus 193 ~D~~~~s~~K~-~gp~G~g~l~vr~~~~~~p~~~g~-~~~~-----~--~~~----gt~~~~~~~al~~al~~~-~~~~~ 258 (382)
T TIGR03403 193 VDFLSFSAHKF-HGPKGVGGLYIRKGVELTPLFHGG-EHMG-----G--RRS----GTLNVPYIVAMGEAMRLA-NEYLD 258 (382)
T ss_pred CCEEEEcchhh-CCCCceEEEEECCCCCCCCcccCC-CCCC-----C--ccc----CCcChHHHHHHHHHHHHH-HHhHH
Confidence 89999999998 569999999999875333211100 0000 0 001 1111112 2444455433 34577
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc------
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE------ 731 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~------ 731 (891)
...++..+++++|.+.|+++++++++.+. . .++++|.+.+. ..+.+...|.++|+...+++.+.
T Consensus 259 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~ 331 (382)
T TIGR03403 259 FEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------EGEAMLWDLNKAGIAASTGSACASEDLEA 331 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------CHHHHHHhhccCCEEEEchhccCCCCCCc
Confidence 77888999999999999999999998653 2 46888988643 35677778888999877654331
Q ss_pred -------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 732 -------------QNDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 732 -------------g~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
....+ +|+++++|++|||+++++|+++++.
T Consensus 332 ~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 332 NPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred CHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12457 9999999999999999999988743
No 190
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.51 E-value=4.9e-06 Score=95.51 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=60.3
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+....+ ...|.++..++.+ +.+.+++.+++. +-+|.++..+|.+|.+.||++|+++
T Consensus 103 Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~l 171 (394)
T PRK09028 103 LLMVDSCYEPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSRI 171 (394)
T ss_pred EEEECCCcHHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHH
Confidence 666666776665533 1245677666543 457788877654 3588889999999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.||.+|+
T Consensus 172 a~~~g~~lvvD~t~a 186 (394)
T PRK09028 172 AHEHDIVVMLDNTWA 186 (394)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999888898884
No 191
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.51 E-value=3.8e-06 Score=95.98 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=59.2
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+...-+ ...+.++..++.+ +.++|++.+++. +-+|+++..+|.+|.+.||++|+++
T Consensus 92 Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~-----~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~l 160 (377)
T TIGR01324 92 VLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL-----IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAKA 160 (377)
T ss_pred EEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHHH
Confidence 667776766554433 2245677666542 227788877654 3488888899999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.||.+|+
T Consensus 161 a~~~g~~livD~t~a 175 (377)
T TIGR01324 161 ARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999888888884
No 192
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.51 E-value=2.8e-06 Score=97.57 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=60.6
Q ss_pred EEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|.+.... +...|.+++.++.+ +.++|++.+++. +-+|++...+|.+|.+.|+++|++
T Consensus 106 ~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ 174 (394)
T PRK07050 106 DVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITA 174 (394)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHH
Confidence 377777787765542 34456788877643 446788777654 347777778889999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|+||
T Consensus 175 ia~~~gi~livD~a~ 189 (394)
T PRK07050 175 AARARGVVTAIDNTY 189 (394)
T ss_pred HHHHcCCEEEEECCc
Confidence 999999888888888
No 193
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.50 E-value=1.5e-05 Score=91.90 Aligned_cols=227 Identities=9% Similarity=0.004 Sum_probs=132.4
Q ss_pred EEEecccchHHHHH---HHHH--cCceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEE-EecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEK---AAMM--AFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFV-STTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~K---aa~l--~gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~V-vataGTT~--------c 572 (891)
.|+++..+|.+... ...+ .+.+++.+|.+ +++.+|+++|+++|++.. ...+++ ....|+.. |
T Consensus 113 ~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~---~k~v~~~~~~~~~~~~~~~I~~la 189 (416)
T PRK00011 113 TILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHK---PKLIIAGASAYSRPIDFKRFREIA 189 (416)
T ss_pred EEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcC---CCEEEECCCcCCCccCHHHHHHHH
Confidence 47777777765322 1122 24577888887 458999999999997521 112222 23344332 3
Q ss_pred hhh-----hcC---------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCcccc
Q psy852 573 YRK-----SQG---------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR 632 (891)
Q Consensus 573 ~~~-----ldG---------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~ 632 (891)
+++ +|+ +..+|.++.++|||+.+|.| |++++.+++...........+..
T Consensus 190 ~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~~~~---------- 258 (416)
T PRK00011 190 DEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFPGIQ---------- 258 (416)
T ss_pred HHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCcccc----------
Confidence 331 222 22478999999999977764 56666544333221111111100
Q ss_pred CCcccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhH
Q psy852 633 HWGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 633 ~~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln 710 (891)
.+... ....++.++.....+++.+.+++..++++++.+.|++. ++++.. ....+++.+.+.+. ....
T Consensus 259 -----~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~-----~~~~ 327 (416)
T PRK00011 259 -----GGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSK-----GLTG 327 (416)
T ss_pred -----CCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCccc-----CCCH
Confidence 00011 11233444444555678889999999999999999986 687753 23457888887532 1134
Q ss_pred HHHHHHHHhCCcEEEeec-cc-----cCCeEE-EEec----CCCCHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPA-SQ-----EQNDEV-FELQ----ERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s-~~-----~g~~~l-~sv~----~~tT~edId~li~~L~ei~ 759 (891)
..+.+.|.+.|+...... .. .....+ ++.. ...|++|+++++++|+++.
T Consensus 328 ~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~ 387 (416)
T PRK00011 328 KEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVL 387 (416)
T ss_pred HHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence 567888888898743211 01 011224 5432 2468999999999999875
No 194
>PRK06108 aspartate aminotransferase; Provisional
Probab=98.49 E-value=7.8e-06 Score=92.71 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=69.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~ 218 (891)
|++..-+|......+...+.+++.++.+. ++.+|+++|++.+.+. +.+|+.+..+|.||.+- ++++|+
T Consensus 111 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~NPtG~~~~~~~~~~l~ 184 (382)
T PRK06108 111 VVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSPNNPTGWTASRDDLRAIL 184 (382)
T ss_pred EEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCCCCCcccCHHHHHHHH
Confidence 66667788888888877788999999874 3469999999888543 34666677899999765 578899
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++++|.+|+++
T Consensus 185 ~~~~~~~~~li~De~y~~~ 203 (382)
T PRK06108 185 AHCRRHGLWIVADEVYERL 203 (382)
T ss_pred HHHHHCCcEEEEehhhhhh
Confidence 9999999999999999654
No 195
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.49 E-value=6.9e-06 Score=95.32 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCCChHHHHHH-HHcCCeEEEEecCC----------CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcc-ccc---cC
Q psy852 149 KEAHSCVEKAA-MMAFVRLKILEPDD----------KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-CSF---DN 213 (891)
Q Consensus 149 ~~~H~Sv~kaa-~~~~~~v~~V~~d~----------~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~-Gav---Dp 213 (891)
...||....++ .+.|...+.+++++ .|.||+++|++.|.+... ..+.+|+++..+|.+ |.+ ++
T Consensus 97 ~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG~~~s~~~ 174 (431)
T cd00617 97 SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGGQPVSMAN 174 (431)
T ss_pred cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCCccCCHHH
Confidence 45787766655 56788999998873 356999999999975411 124467777777766 665 46
Q ss_pred HHHHHHHHHHcCCceeeeccc
Q psy852 214 LAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 214 l~~I~~i~~~~~~~lHvDaA~ 234 (891)
+++|.++|+++|++||.|+|.
T Consensus 175 l~~i~eia~~~gi~li~DaAr 195 (431)
T cd00617 175 LREVRELAHKYGIPVVLDAAR 195 (431)
T ss_pred HHHHHHHHHHcCCEEEEEchh
Confidence 778899999999999999995
No 196
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.49 E-value=1.3e-05 Score=91.56 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=70.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
.|+++.-+|.....++...|.+++.++.+. .+.+|++.|++.+++.. .+|+++.-+|.+|.+ +++++|+
T Consensus 117 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~NPtG~~~~~~~~~~l~ 190 (393)
T PRK05764 117 EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKT------KALILNSPSNPTGAVYSPEELEAIA 190 (393)
T ss_pred EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccc------eEEEEECCCCCCCcccCHHHHHHHH
Confidence 377777888888888777788999999974 45789999999886432 355666778899998 4588999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|.+|+.
T Consensus 191 ~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 191 DVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHHHCCcEEEEeccccc
Confidence 999999999999999954
No 197
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.48 E-value=1.1e-05 Score=93.85 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=62.2
Q ss_pred EEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...|...... +...+.+++.|+++ |+++|++++++. +-+|+++.-+|.+|.+-|+++|++
T Consensus 105 ~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~ 173 (431)
T PRK08248 105 EIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAA 173 (431)
T ss_pred EEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 377777777554332 33457788888763 889999888653 346667778889999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++.+|++++
T Consensus 174 la~~~gi~vIvD~t~a 189 (431)
T PRK08248 174 IAHEHGIPLIVDNTFA 189 (431)
T ss_pred HHHHcCCEEEEeCCCC
Confidence 9999999999999883
No 198
>PRK04311 selenocysteine synthase; Provisional
Probab=98.46 E-value=3.1e-06 Score=98.94 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=61.0
Q ss_pred EEecCCCChHH------HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc--cc--cccCH
Q psy852 145 AYCSKEAHSCV------EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--CC--SFDNL 214 (891)
Q Consensus 145 v~~S~~~H~Sv------~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~--~G--avDpl 214 (891)
|++|..+|+++ ...+...|.+++.|+++ +..++++++++|.+.+ .+|..++-+|. +| ..-|+
T Consensus 168 VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~T------klV~~vh~sN~~i~G~~~~~dl 239 (464)
T PRK04311 168 VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENT------ALLLKVHTSNYRIEGFTKEVSL 239 (464)
T ss_pred EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccC------eEEEEEcCCCccccccCCcCCH
Confidence 78888877743 22334457788888653 4568999999997654 35666665654 45 56799
Q ss_pred HHHHHHHHHcCCceeeecccc
Q psy852 215 AEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~G 235 (891)
++|+++|+++|+++.+|++.|
T Consensus 240 ~eI~~lak~~gi~vivD~gsG 260 (464)
T PRK04311 240 AELAALGKEHGLPVVYDLGSG 260 (464)
T ss_pred HHHHHHHHHcCCeEEEECCCc
Confidence 999999999999999999764
No 199
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.46 E-value=9.4e-06 Score=94.26 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=63.3
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+..+.. ...+.+++.++++ |++++++++++. +.+|.+..-+|.+|.+-|+++|+++
T Consensus 105 VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~l 173 (427)
T PRK05994 105 FIAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAEV 173 (427)
T ss_pred EEEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHH
Confidence 777777777654432 3356788888764 789999888653 3477778888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.|++
T Consensus 174 a~~~gi~livD~a~a 188 (427)
T PRK05994 174 AHRAGLPLIVDNTLA 188 (427)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999999999883
No 200
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.45 E-value=5.7e-06 Score=94.56 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=61.8
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+....+ ...+.+++.++. .|++++++++++.+ -+|.+..-+|.+|.+.|+++|+++
T Consensus 91 Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~~t------klV~le~P~NPtg~~~dl~~I~~l 159 (377)
T PRK07671 91 VILTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRPNT------KAIYVETPTNPLLKITDIKKISTI 159 (377)
T ss_pred EEECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHH
Confidence 677777776454432 224667777764 38999999887643 477778888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.||+
T Consensus 160 a~~~g~~lvvD~a~~ 174 (377)
T PRK07671 160 AKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999999884
No 201
>PRK10534 L-threonine aldolase; Provisional
Probab=98.42 E-value=7.4e-06 Score=91.30 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=59.6
Q ss_pred EEecCCCChHHHHH--H-HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH---H
Q psy852 145 AYCSKEAHSCVEKA--A-MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI---G 218 (891)
Q Consensus 145 v~~S~~~H~Sv~ka--a-~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I---~ 218 (891)
|+++...|.+...+ + ..++.+++.+++++++.+|+++|++++.+....+..+.+|++. |+.+|++-|.++| +
T Consensus 76 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~--np~~G~v~~~~~l~~i~ 153 (333)
T PRK10534 76 YIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLE--NTHNGKVLPREYLKQAW 153 (333)
T ss_pred eEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEe--cCCCCeecCHHHHHHHH
Confidence 56666677544432 2 3344677888888889999999999886532111123344443 5567999888766 5
Q ss_pred HHHHHcCCceeeeccc
Q psy852 219 PVAKEFDVWLHVDGAY 234 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~ 234 (891)
++|+++++++++|.|+
T Consensus 154 ~~~~~~~~~lvvDEA~ 169 (333)
T PRK10534 154 EFTRERNLALHVDGAR 169 (333)
T ss_pred HHHHHcCCeEEeeHHH
Confidence 6788889999999987
No 202
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.42 E-value=5.7e-06 Score=94.64 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=60.9
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+....+ ...+.+++.++. .|++++++++++. +-+|.+...+|.+|.+.|+++|+++
T Consensus 91 Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~l 159 (380)
T PRK06176 91 VLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-----SDLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCASV 159 (380)
T ss_pred EEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-----CCHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHHH
Confidence 666666665554333 234667777764 3899999888654 3477777789999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.||+
T Consensus 160 a~~~gi~vivD~t~a 174 (380)
T PRK06176 160 AKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999999999883
No 203
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.41 E-value=8.3e-06 Score=93.50 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=120.4
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++..+|.+....+ . .++.++..++ ..|++++++.+++. +-+|.++..+|.+|.+-|+++|.+
T Consensus 93 ~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~ 161 (386)
T PRK08045 93 LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICH 161 (386)
T ss_pred EEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHH
Confidence 4777777777654433 2 2444666653 36899999888654 347777899999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++.+|.||+.....
T Consensus 162 ia~~~g~~vivDeay~~~~~~----------------------------------------------------------- 182 (386)
T PRK08045 162 LAREAGAVSVVDNTFLSPALQ----------------------------------------------------------- 182 (386)
T ss_pred HHHHcCCEEEEECCCCccccC-----------------------------------------------------------
Confidence 999999988899988321100
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD-- 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~-- 377 (891)
. ++ + ..+|-+..+.|||+.+|-+
T Consensus 183 ------------------------------------------------~----pl-~--~gaDivv~S~tK~l~G~~d~~ 207 (386)
T PRK08045 183 ------------------------------------------------N----PL-A--LGADLVLHSCTKYLNGHSDVV 207 (386)
T ss_pred ------------------------------------------------C----ch-h--hCCCEEEeecceeccCCCCce
Confidence 0 00 0 1368889999999988876
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|+++.+++. +...+.....++ +. ...++..|+.++.+. -+...+++..++|..+++.|+
T Consensus 208 ~G~vi~~~~~-~~~~l~~~~~~~-------------g~----~~~p~~~~l~~rgl~--tl~~R~~~~~~na~~la~~L~ 267 (386)
T PRK08045 208 AGVVIAKDPD-VVTELAWWANNI-------------GV----TGGAFDSYLLLRGLR--TLVPRMELAQRNAQAIVKYLQ 267 (386)
T ss_pred eEEEEeCcHH-HHHHHHHHHHhc-------------CC----CCCHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHH
Confidence 6777665543 211111100111 11 134566787777665 488999999999999999999
Q ss_pred cCCccccc
Q psy852 458 RDPRFEIS 465 (891)
Q Consensus 458 ~~~~~eVv 465 (891)
++|.++-+
T Consensus 268 ~~p~v~~V 275 (386)
T PRK08045 268 TQPLVKKL 275 (386)
T ss_pred cCCCEeEE
Confidence 99987644
No 204
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.41 E-value=5.5e-05 Score=86.03 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=124.0
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc--CCccEEE---EecCCccc--------hh
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM--GYIPFFV---STTLGTTS--------CY 573 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~--g~ip~~V---vataGTT~--------c~ 573 (891)
-.|+++..+|.|+..++.+........ +..|+++|+++|++.... ..+.+++ .+..|+.. |+
T Consensus 96 d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~ 170 (370)
T PRK05937 96 DYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSK 170 (370)
T ss_pred CEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHH
Confidence 368888999999999987653322223 346899999999864321 1222222 23345544 44
Q ss_pred h-----hhcCC-------------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 574 R-----KSQGI-------------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 574 ~-----~ldGi-------------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
+ ++|++ +..+-+..+++|+++ |.|+|+++.++. ..........|....
T Consensus 171 ~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~~vl~~~~~--~~~~~~~~~~~~~s~----- 242 (370)
T PRK05937 171 KYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGAALLSSSEV--KQDLMLNSPPLRYST----- 242 (370)
T ss_pred HcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCceEEEcCHHH--HHHHHHhCCCCeecC-----
Confidence 3 12221 112234566779775 788887655331 111110111222110
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhh
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~l 709 (891)
+. -+...+.+..+++.+-..+ ....++..+++++|.+.|.... + ..++.|.+.+. .
T Consensus 243 -----~~---~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-------~-~~~~~i~~~~~-------~ 298 (370)
T PRK05937 243 -----GL---PPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-------P-GCVQPIFLPGI-------S 298 (370)
T ss_pred -----CC---CHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-------C-CCEEEEEeCCh-------h
Confidence 10 1122334445666665555 4456778888999988886421 0 11233555432 3
Q ss_pred HHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++.+.+.|.+.|+.....+ ......+ |+++.++|++|||+++++|+++..
T Consensus 299 ~~~~~~~L~~~gi~v~~~~-~~~~~~iRis~~~~~t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 299 EQELYSKLVETGIRVGVVC-FPTGPFLRVNLHAFNTEDEVDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHHHHCCeeEEeeC-CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888988998643322 2234467 999999999999999999998764
No 205
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.40 E-value=3.4e-05 Score=87.60 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=67.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++...|.+...++.+.+.++..++ .+|++++++.+.+... ..+.+|+.....+.+|.+.|+++|.++|++
T Consensus 119 ~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~ 191 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAER 191 (385)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHH
Confidence 477778899999888777666665553 5889999988875421 224566667677889999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
||+++++|.+|+
T Consensus 192 ~~~~li~De~~~ 203 (385)
T TIGR01825 192 YGAVTYVDDAHG 203 (385)
T ss_pred hCCEEEEECccc
Confidence 999999999994
No 206
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.38 E-value=1.9e-05 Score=89.80 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=59.6
Q ss_pred EEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+.+.. ..+...|.+++.++. .|+++|++++++. +-+|.+..-+|.+|.+.++++|+++
T Consensus 93 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~l 161 (366)
T PRK08247 93 LIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAKI 161 (366)
T ss_pred EEEecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHHH
Confidence 555555554432 223345678888775 3899999988654 3477777777889999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++.+|.+|+
T Consensus 162 a~~~g~~lIvD~t~~ 176 (366)
T PRK08247 162 AKKHGLLLIVDNTFY 176 (366)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999888888883
No 207
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.38 E-value=3.9e-07 Score=100.33 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH--
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-- 523 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-- 523 (891)
.++.+.+++.+.. +. .+ +..+||.+|.+++.+.-. +.-.|++...+|..+....
T Consensus 32 ~~l~~~i~~l~g~-e~--a~--f~~sGT~An~~al~~~~~-------------------~~~~vi~~~~aHi~~~E~ga~ 87 (290)
T PF01212_consen 32 ARLEERIAELFGK-EA--AL--FVPSGTMANQLALRAHLR-------------------PGESVICADTAHIHFDETGAI 87 (290)
T ss_dssp HHHHHHHHHHHTS-SE--EE--EESSHHHHHHHHHHHHHH-------------------TTEEEEEETTEHHHHSSTTHH
T ss_pred HHHHHHHHHHcCC-CE--EE--EeCCCChHHHHHHHHHHh-------------------cCCceeccccceeeeeccchh
Confidence 3444566666655 22 12 566899999999877542 1234899999999886643
Q ss_pred -HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----C--Cccc-----------hhh-----hhcCC-
Q psy852 524 -MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----L--GTTS-----------CYR-----KSQGI- 579 (891)
Q Consensus 524 -~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----a--GTT~-----------c~~-----~ldGi- 579 (891)
.+.|.+++.||.+++|.||+++|++.+++.......|-+|+.+ . |+.. |++ |+||.
T Consensus 88 ~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR 167 (290)
T PF01212_consen 88 EELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR 167 (290)
T ss_dssp HHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT
T ss_pred hHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh
Confidence 3678999999998889999999999998854322335555432 2 4433 444 57763
Q ss_pred ----------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccccc
Q psy852 580 ----------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 580 ----------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
.++|++++++.|.+++|. |.+++-+++.+...... ..++.. ++.-+ ++-
T Consensus 168 l~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~-~k~~gg-----------~~~~~-G~~ 232 (290)
T PF01212_consen 168 LANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQ-RKRLGG-----------GMRQA-GVL 232 (290)
T ss_dssp HHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHH-HHHHTH-----------HHHHT-THH
T ss_pred HHHhhhcccccHHHHhhhCCEEEEEEEccccccc--ceEEEechHHHHHHHHH-HHHhcc-----------Ceeec-cee
Confidence 779999999999999998 66777666544432211 000000 00000 000
Q ss_pred -chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeE
Q psy852 644 -SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGL 693 (891)
Q Consensus 644 -aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~i 693 (891)
+..++......+.+.....+++..++|++|.+.|+..+. .+..++..|.
T Consensus 233 ~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~-~~~~~~~tn~ 282 (290)
T PF01212_consen 233 AAAELYQFAALRALELWLERARHANAMAKRLAAGLEALGG-VLPRPVETNQ 282 (290)
T ss_dssp HHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEECE-EEETTSS-HH
T ss_pred eeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCC-cccCCCCCcE
Confidence 001111122233344467788899999999999988654 3555555543
No 208
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=98.38 E-value=1.7e-05 Score=88.88 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=67.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-++......+...+.+++.++++++|.+|++.|++.+.+. +.+|+++..+|.+|.+-|++++.++|+.+
T Consensus 98 v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~ 171 (346)
T TIGR01141 98 VLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERT 171 (346)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 666555554444455667889999999999999999999976433 34677778899999999999999999987
Q ss_pred --CCceeeecccc
Q psy852 225 --DVWLHVDGAYA 235 (891)
Q Consensus 225 --~~~lHvDaA~G 235 (891)
++++.+|.+|+
T Consensus 172 ~~~~~ii~D~~y~ 184 (346)
T TIGR01141 172 PEDALVVVDEAYG 184 (346)
T ss_pred CCCcEEEEECchh
Confidence 88899999984
No 209
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=98.38 E-value=1.7e-05 Score=88.91 Aligned_cols=249 Identities=12% Similarity=0.075 Sum_probs=145.7
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV 528 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv 528 (891)
-+.+++.++..+. +|+ +++|+++++..++.+.. . +.-.|+++.-.+......+...|.
T Consensus 60 r~~ia~~~~~~~~-~i~--~~~G~~~~l~~~~~~l~----~---------------~gd~v~~~~p~y~~~~~~~~~~g~ 117 (346)
T TIGR01141 60 KQALADYYGVDPE-QIL--LGNGSDEIIELLIRAFL----E---------------PGDAVLVPPPTYSMYEISAKIHGA 117 (346)
T ss_pred HHHHHHHhCcChH-HEE--EcCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCCHHHHHHHHHHcCC
Confidence 3444445543233 566 67888888766654421 0 112366666666655666677899
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-------hcCC--------C--
Q psy852 529 RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-------SQGI--------E-- 580 (891)
Q Consensus 529 ~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-------ldGi--------~-- 580 (891)
+++.+|.++++.+|++.|++++.+.+ ..++++ +..|++. |..+ +|.+ .
T Consensus 118 ~~~~~~~~~~~~~d~~~l~~~~~~~~----~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~ 193 (346)
T TIGR01141 118 EVVKVPLDEDGQLDLEDILVAIDDKP----KLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL 193 (346)
T ss_pred eEEEeccCCCCCCCHHHHHHhcCCCC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHH
Confidence 99999999889999999999875432 122322 3345544 2110 1111 0
Q ss_pred -----Ccc-EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 581 -----YAD-SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 581 -----~aD-SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
..+ -+..+.+||++.| ..+|+++.++. +.+.+..... .++. + .+.+..+...
T Consensus 194 ~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~-------------~~~~--~----~~~~~~~~~~ 252 (346)
T TIGR01141 194 PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE--IIDALNKVRA-------------PFNL--S----RLAQAAAIAA 252 (346)
T ss_pred HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH--HHHHHHhccC-------------CCCC--C----HHHHHHHHHH
Confidence 012 3355789999655 45898887432 2222211000 0110 1 1122222222
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 654 YGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 654 lG~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
+-.. .+.+..++..++++++.+.|++.+++++. ++..+.++|.+.. ..+++.+.|.+.|+....+....+
T Consensus 253 l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~--------~~~~~~~~L~~~gI~v~~g~~f~~ 323 (346)
T TIGR01141 253 LRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR--------DADALFEALLEKGIIVRDLNSYPG 323 (346)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC--------CHHHHHHHHHHCCeEEEeCCCcCC
Confidence 2211 36667777888899999999988888864 4456678887742 346788889899977554432211
Q ss_pred -CeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 733 -NDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 733 -~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
...+ ++++ +++|+++++++|+
T Consensus 324 ~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 324 LPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred CCCeEEEecC---CHHHHHHHHHHhC
Confidence 3456 8765 7899999998763
No 210
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.37 E-value=5.3e-05 Score=87.03 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=64.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhh--------cCCcceEEEeecccCccccccCHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET--------MGYIPFFVSTTLGTTSCCSFDNLA 215 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~--------~g~~p~~V~~t~Gtt~~GavDpl~ 215 (891)
.|++.+..|.|+..++.+.+.++++++.+ |.+++++.++.... ....+.+|++-...+.+|.+-|++
T Consensus 84 ~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~ 158 (392)
T PLN03227 84 LLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLK 158 (392)
T ss_pred EEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHH
Confidence 58899999999988887766677766643 24445544332211 112345666666778899999999
Q ss_pred HHHHHHHHcCCceeeecccc
Q psy852 216 EIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~G 235 (891)
+|.++|+++|+++++|-+++
T Consensus 159 ~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 159 ELVALKEEFHYRLILDESFS 178 (392)
T ss_pred HHHHHHHHcCCEEEEECccc
Confidence 99999999999999999995
No 211
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.36 E-value=6.9e-05 Score=84.75 Aligned_cols=216 Identities=11% Similarity=0.104 Sum_probs=130.7
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC----Cccc--------hhhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL----GTTS--------CYRK 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata----GTT~--------c~~~ 575 (891)
.|+++...|.+...++.+.+.+++.+|. .|+++|++.+++... ...++++.+. |+.. |+++
T Consensus 125 ~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~~--~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~ 197 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKWRA--GRALIVTESVFSMDGDLAPLAELVALARRH 197 (385)
T ss_pred EEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhccC--CCeEEEEEecccCCCCcCCHHHHHHHHHHh
Confidence 5778889999999998888888888876 389999999975311 1223333322 3222 4331
Q ss_pred -----hc-----C--------------CC-Ccc-EEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCC
Q psy852 576 -----SQ-----G--------------IE-YAD-SFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGA 628 (891)
Q Consensus 576 -----ld-----G--------------i~-~aD-SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~ 628 (891)
+| | +. ..| -+..+.||+++. .| |+++. ++... +.+. ....|..
T Consensus 198 ~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-g~~~~-~~~~~-~~~~~~~~~~~~------ 267 (385)
T PRK05958 198 GAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SG-AAVLG-SETLI-DYLINRARPFIF------ 267 (385)
T ss_pred CCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CC-cEEEc-CHHHH-HHHHHhCcccee------
Confidence 11 1 11 123 346788999974 33 55544 33222 2211 1111110
Q ss_pred ccccCCccccc-ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhh
Q psy852 629 IDYRHWGIPLS-RRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD 707 (891)
Q Consensus 629 ~~~~~~ti~~S-Rr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d 707 (891)
..+ -.......+.+++.+... .+..++..++++++.+.|++. ++++. ++..++++|.++. .
T Consensus 268 --------~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~------~ 329 (385)
T PRK05958 268 --------TTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGD------N 329 (385)
T ss_pred --------cCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC------H
Confidence 011 112233444555544322 566778888999999999875 46654 4566788888742 2
Q ss_pred hhHHHHHHHHHhCCcEEEeec--c-ccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 708 QNNRKLLEDINASGRLHMVPA--S-QEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 708 ~ln~~L~~~L~~~G~~~~s~s--~-~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
....++.+.|.+.|+.+.... . ..+..++ ++++.+++++|++++++.|+++
T Consensus 330 ~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 330 ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 345678899988998854311 1 1234567 9999889999999999998764
No 212
>PLN02822 serine palmitoyltransferase
Probab=98.35 E-value=5.9e-05 Score=89.02 Aligned_cols=87 Identities=8% Similarity=0.132 Sum_probs=67.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhc----CCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM----GYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~----g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
+|++....|+|+..++.+.+.++++++.+ |.++|+..+++..+. .....+|++..-.+.+|.+-|+++|++
T Consensus 195 ~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~ 269 (481)
T PLN02822 195 IIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVR 269 (481)
T ss_pred EEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHH
Confidence 46677889999999988888888888765 456677666543221 122256666666777999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|++||+++.+|-+++
T Consensus 270 l~~k~~~~LIvDEa~s 285 (481)
T PLN02822 270 LKEKYRFRVLLDESNS 285 (481)
T ss_pred HHHHcCCEEEEECCcc
Confidence 9999999999999995
No 213
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=98.35 E-value=0.00012 Score=83.32 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=130.8
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc--------hh
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS--------CY 573 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~--------c~ 573 (891)
..|++.+..|++...++.+.+.+++.++. +|+++|++.+++....+..+.+|+. ..|+.. |.
T Consensus 127 d~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~ 201 (397)
T PRK06939 127 DAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLAD 201 (397)
T ss_pred CEEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHH
Confidence 35888899999999988888887777765 5899999998763222212233332 123322 43
Q ss_pred hh--------------h--c--------CC-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhcc-CCCccccCCCC
Q psy852 574 RK--------------S--Q--------GI-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV-DPLYLQHGHEG 627 (891)
Q Consensus 574 ~~--------------l--d--------Gi-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~-~~~Yl~~~~e~ 627 (891)
++ + . ++ +.+|.+..++||+++++ ..|+++.+.+ .+ +.+.. ...|..
T Consensus 202 ~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~-r~G~v~~~~~-~~-~~l~~~~~~~~~----- 273 (397)
T PRK06939 202 KYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA-SGGYTAGRKE-VI-DWLRQRSRPYLF----- 273 (397)
T ss_pred HhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc-CceEEEeCHH-HH-HHHHHhCccccc-----
Confidence 31 0 0 11 23578888999999655 4577766533 22 22221 111110
Q ss_pred CccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhh
Q psy852 628 AIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIA 706 (891)
Q Consensus 628 ~~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~ 706 (891)
.++- ......+..+++.+. ...+..++..++++++.+.|++. ++++.. +..+++.+.+.+
T Consensus 274 ---------~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~------ 334 (397)
T PRK06939 274 ---------SNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFTLGP-GEHPIIPVMLGD------ 334 (397)
T ss_pred ---------cCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEECC------
Confidence 0011 111222333444432 12456677788899999999875 455543 344555444432
Q ss_pred hhhHHHHHHHHHhCCcEEEeeccc----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLEDINASGRLHMVPASQ----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 707 d~ln~~L~~~L~~~G~~~~s~s~~----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.....++.+.|.++|+... +... .+...+ ++++...+++||+++++.|++++.
T Consensus 335 ~~~~~~~~~~L~~~gI~v~-~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 335 AKLAQEFADRLLEEGVYVI-GFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred HHHHHHHHHHHHHCCceEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1245678899988898755 3221 223456 888888899999999999987763
No 214
>PLN02271 serine hydroxymethyltransferase
Probab=98.34 E-value=6.8e-05 Score=88.37 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC-CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecc
Q psy852 435 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSK 513 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~it-sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~ 513 (891)
-+.+.++-.-+++.|+.+. ..... +....++ .+|+.||+.++++. .+ +.-.|+..+
T Consensus 189 ~~~iD~iE~la~era~~lF---~~~~~-~~gaNVQp~SGs~AN~aV~~AL----l~---------------PGD~IL~ld 245 (586)
T PLN02271 189 NQYIDQIERLCCERALAAF---GLDSE-KWGVNVQPYSCTSANFAVYTGL----LL---------------PGDRIMGLD 245 (586)
T ss_pred ChhHHHHHHHHHHHHHHHh---CCccc-ccccceeeccHHHHHHHHHHHh----cC---------------CCCEEEEec
Confidence 4445555566666666554 21110 1101122 27789999888764 11 112233322
Q ss_pred ---cchHHHH------HHHHHcCceEEEec--CC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc----------
Q psy852 514 ---EAHSCVE------KAAMMAFVRLKILE--PD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS---------- 571 (891)
Q Consensus 514 ---~aH~Sv~------Kaa~l~gv~v~~Vp--~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~---------- 571 (891)
-.|.+.. +-+...++.+..+| +| ++|.+|.++|++..... .|-+|+...-...
T Consensus 246 l~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~-----rPKLII~g~Saypr~~D~~~i~e 320 (586)
T PLN02271 246 SPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDF-----RPKILICGGSSYPREWDYARFRQ 320 (586)
T ss_pred CCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhc-----CCeEEEECchhccCcCCHHHHHH
Confidence 3455543 12233455455555 64 67999999999855332 2444544222211
Q ss_pred -hhh----------hhcC----------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccC-----C
Q psy852 572 -CYR----------KSQG----------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG-----H 625 (891)
Q Consensus 572 -c~~----------~ldG----------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~-----~ 625 (891)
|.+ |..| +.++|.++.+.||||.+|.| |+++++++.. +............ .
T Consensus 321 IAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~~g~~gs~s~~~~~~d~ 397 (586)
T PLN02271 321 IADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRKQGMLLSHGDDNSHYDF 397 (586)
T ss_pred HHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccccCCccccccccccHHH
Confidence 322 2222 46799999999999999999 8888876522 1111000000000 0
Q ss_pred CCCccccC-Ccccccccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCc
Q psy852 626 EGAIDYRH-WGIPLSRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSEN 702 (891)
Q Consensus 626 e~~~~~~~-~ti~~SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~ 702 (891)
+...+..- .+++++-.. ...++..+++......+++..++.+++|+.|++.|.+. +|.+++. .+.++|...+.+.+
T Consensus 398 ~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g 476 (586)
T PLN02271 398 EEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLG 476 (586)
T ss_pred HHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccC
Confidence 00001111 133433322 23455667777777788999999999999999999884 8888753 45677777775542
Q ss_pred chhhhhhHHHHHHHHHhCCcEEEeecc------ccCCeEEEE----ecCCCCHHHHHHHHHHHHHHHHH
Q psy852 703 NLIADQNNRKLLEDINASGRLHMVPAS------QEQNDEVFE----LQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~~G~~~~s~s~------~~g~~~l~s----v~~~tT~edId~li~~L~ei~~~ 761 (891)
-.....-..|.+.|+..---+. ....++.+. +.....++|++++.+.|.+++++
T Consensus 477 -----~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~~ 540 (586)
T PLN02271 477 -----LTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQI 540 (586)
T ss_pred -----CCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 1234455556667765211110 011112232 44567889999999999988763
No 215
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.34 E-value=8e-05 Score=85.15 Aligned_cols=281 Identities=12% Similarity=0.040 Sum_probs=159.5
Q ss_pred HHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH
Q psy852 446 CELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM 525 (891)
Q Consensus 446 lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l 525 (891)
.++-+.+++.+... . ++ .++|||+++..++.+.. . .+.-.|+++..+|.+...++..
T Consensus 36 ~~le~~la~~~g~~-~--~v--~~~sgt~al~lal~al~---~---------------~~Gd~Viv~~~~~~~~~~~~~~ 92 (379)
T PRK11658 36 QALEQAFCQLTGNQ-H--AI--AVSSATAGMHITLMALG---I---------------GPGDEVITPSLTWVSTLNMIVL 92 (379)
T ss_pred HHHHHHHHHHhCCC-e--EE--EECCHHHHHHHHHHHcC---C---------------CCCCEEEECCCcHHHHHHHHHH
Confidence 33444555555442 2 23 35788999888876531 0 0122588889999999888888
Q ss_pred cCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh-----hcC-------------
Q psy852 526 AFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK-----SQG------------- 578 (891)
Q Consensus 526 ~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~-----ldG------------- 578 (891)
.|++++.+++|.+ +.+|+++|+++|.+.++ .++++...|... |+++ .|+
T Consensus 93 ~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tk----av~~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~ 168 (379)
T PRK11658 93 LGATPVMVDVDRDTLMVTPEAIEAAITPRTK----AIIPVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI 168 (379)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcccCCe----EEEEeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeec
Confidence 8999999999865 46999999999976422 233455567664 4331 111
Q ss_pred -CCCccEEEEcCcccCCcccccEEEEEeCCccchhh--hccCCCccccC----CCCCccccCCcccccccccchHHHHHH
Q psy852 579 -IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA--LVVDPLYLQHG----HEGAIDYRHWGIPLSRRFRSLKLWFVI 651 (891)
Q Consensus 579 -i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~--l~~~~~Yl~~~----~e~~~~~~~~ti~~SRr~~aL~lW~~L 651 (891)
-..++.++++++|.+.++- -|+++..+++...+. +...-.+.... ....+.+..+.+ +-.++--.+=+++
T Consensus 169 g~~g~~~~Sf~~~K~l~~g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~--G~n~~~~~l~AAl 245 (379)
T PRK11658 169 GARGTAIFSFHAIKNITCAE-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTP--GYKYNLADINAAI 245 (379)
T ss_pred CCCCCEEEeCCCCCcCcccC-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecc--ccccCcCHHHHHH
Confidence 1234778999999886542 344444444433221 11111111000 000000000001 1011112233455
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEE-
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHM- 725 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~- 725 (891)
...-.+++.+..++..++++++.+.|++++...+..+.. ..+.+|++.+.. .+....++.+.|.+.|+...
T Consensus 246 ~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~L~~~gI~~~~ 322 (379)
T PRK11658 246 ALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEER---CGISRDALMEALKERGIGTGL 322 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcc---ccCCHHHHHHHHHHCCCCCcc
Confidence 556678899999999999999999999876432322211 245667764210 01235678888888886411
Q ss_pred --eecc----cc--------------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 726 --VPAS----QE--------------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 726 --s~s~----~~--------------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+.. .. ....+ +-+++..|++|+++++++|+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 323 HFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0100 00 01123 44677899999999999999864
No 216
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.33 E-value=5.3e-06 Score=95.01 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCc-cc---cccCH
Q psy852 150 EAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-CC---SFDNL 214 (891)
Q Consensus 150 ~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~-~G---avDpl 214 (891)
..||-.-++. .+.|...+.+++ +.+|.||++.|++.|++.-. +.++ ++..+..+|. -| ..+++
T Consensus 129 n~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~-~~i~-~v~~tlt~N~~GGqpvslenl 206 (467)
T TIGR02617 129 NYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVP-YIVATITCNSAGGQPVSLANL 206 (467)
T ss_pred EEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC-CCce-eeeeeEEEecCCCEEeCHHHH
Confidence 3444433333 566766665532 24699999999999986411 1223 3333333333 34 34778
Q ss_pred HHHHHHHHHcCCceeeeccc
Q psy852 215 AEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 215 ~~I~~i~~~~~~~lHvDaA~ 234 (891)
.+|.++|++||+.+|+|||-
T Consensus 207 r~V~~la~~~GIplhLDgAR 226 (467)
T TIGR02617 207 KAVYEIAKKYDIPVVMDSAR 226 (467)
T ss_pred HHHHHHHHHcCCcEEEEhHH
Confidence 88999999999999999988
No 217
>KOG2862|consensus
Probab=98.33 E-value=1.6e-05 Score=85.89 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHH
Q psy852 36 DMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ 115 (891)
Q Consensus 36 ~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~ 115 (891)
.-+..++|.|+.. ..||.+..|=.++++-+-..|.=..+... .+.+.|+
T Consensus 30 ~~V~~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~~tf----------------------------~isgsGh-- 78 (385)
T KOG2862|consen 30 GRVQEAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANAQTF----------------------------VISGSGH-- 78 (385)
T ss_pred HHHHHhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCCceE----------------------------EEecCCc--
Confidence 4444555555544 37899999999999999998865443210 0112232
Q ss_pred HHHHHHHHHHhccccCCccccccccCC-eEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCC
Q psy852 116 SVQNIIVLTRGQKKIHPFVDEGVLLSK-LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY 194 (891)
Q Consensus 116 ~~~~~~~~ar~~~~~~~~~~~g~~~~~-~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~ 194 (891)
+ ...+.+.+.- .|. .+ +++.+..-.|-...-+ +--|.+|..|+.|.-....++.+++.+.+.+
T Consensus 79 ~-g~E~al~N~l---ePg-------d~vLv~~~G~wg~ra~D~~-~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~---- 142 (385)
T KOG2862|consen 79 S-GWEAALVNLL---EPG-------DNVLVVSTGTWGQRAADCA-RRYGAEVDVVEADIGQAVPLEEITEKLSQHK---- 142 (385)
T ss_pred c-hHHHHHHhhc---CCC-------CeEEEEEechHHHHHHHHH-HhhCceeeEEecCcccCccHHHHHHHHHhcC----
Confidence 1 1122221111 111 11 1222222333322222 2245689999888888899999999998854
Q ss_pred cceEEEeecccCccccccC-HHHHHHHHHHcCCceeeecc
Q psy852 195 IPFFVSTTLGTTSCCSFDN-LAEIGPVAKEFDVWLHVDGA 233 (891)
Q Consensus 195 ~p~~V~~t~Gtt~~GavDp-l~~I~~i~~~~~~~lHvDaA 233 (891)
|.+|.+|.|.|.||..+| ++.+.++|++|+..+.||+.
T Consensus 143 -p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~V 181 (385)
T KOG2862|consen 143 -PKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTV 181 (385)
T ss_pred -CceEEEEecCccccccchHHHHHHHHhhcCCeEEEEech
Confidence 889999999999999999 77778999999999999984
No 218
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.32 E-value=1.4e-05 Score=91.48 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=119.3
Q ss_pred EEEecCCCChHHHHHH-H---HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa-~---~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...+.+....+ . .++.++..++. .|+++|++++++. +-+|.++..+|.+|.+-|+++|++
T Consensus 92 ~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~ 160 (382)
T TIGR02080 92 LLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICH 160 (382)
T ss_pred EEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHH
Confidence 3777777776654433 2 23445555532 3789999988654 347778889999999999999999
Q ss_pred HHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 220 VAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
+|+++|+++.+|.||.-+...
T Consensus 161 la~~~g~~vvvD~a~~~~~~~----------------------------------------------------------- 181 (382)
T TIGR02080 161 LAKAVGAVVVVDNTFLSPALQ----------------------------------------------------------- 181 (382)
T ss_pred HHHHcCCEEEEECCCcccccC-----------------------------------------------------------
Confidence 999999999999988211100
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD-- 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~-- 377 (891)
. ++ + ..+|-+..+++||+.++-+
T Consensus 182 ------------------------------------------------~----pl-~--~gaDivv~S~sK~l~G~~~~~ 206 (382)
T TIGR02080 182 ------------------------------------------------N----PL-A--LGADLVLHSCTKYLNGHSDVI 206 (382)
T ss_pred ------------------------------------------------C----ch-h--hCCCEEEeecceeccCCCCce
Confidence 0 00 0 0358888999999988765
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|+++.++...... +.....|+ +-...++..|..++ |.+-+..++++..++|..+++.|+
T Consensus 207 ~G~i~~~~~~~~~~-l~~~~~~~-----------------g~~~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a~~L~ 266 (382)
T TIGR02080 207 AGAVIAKDPQVAEE-LAWWANNL-----------------GVTGGAFDSYLTLR--GLRTLVARMRLQQRNAQAIVEYLQ 266 (382)
T ss_pred eEEEEeCCHHHHHH-HHHHHHcc-----------------CCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 67777766532221 11111111 11134667788866 556677778888899999999999
Q ss_pred cCCcccccc
Q psy852 458 RDPRFEISN 466 (891)
Q Consensus 458 ~~~~~eVv~ 466 (891)
++|.++-+.
T Consensus 267 ~~p~v~~V~ 275 (382)
T TIGR02080 267 TQPLVKKIY 275 (382)
T ss_pred hCCCeeEEE
Confidence 999876443
No 219
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.32 E-value=2.4e-05 Score=90.12 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=61.3
Q ss_pred EEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.... +...+.+++.++.+ |++++++.+++. +-+|++...+|.+|.+-|+++|+++
T Consensus 106 Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~l 174 (400)
T PRK06234 106 VVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISNI 174 (400)
T ss_pred EEEecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHHH
Confidence 66666666554333 34467788888754 799999988754 3477778899999999999999999
Q ss_pred HHHc--CCceeeeccc
Q psy852 221 AKEF--DVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~--~~~lHvDaA~ 234 (891)
|+++ ++++.+|.||
T Consensus 175 a~~~~~~i~livDea~ 190 (400)
T PRK06234 175 AHENNKECLVFVDNTF 190 (400)
T ss_pred HHhcCCCCEEEEECCC
Confidence 9997 7888888887
No 220
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.32 E-value=6.5e-05 Score=79.88 Aligned_cols=260 Identities=14% Similarity=0.080 Sum_probs=158.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~ 545 (891)
+|-|+.|+-+..+.+... ..-.|++-..+||+-.-||...|.++..||.. +.+.++++.
T Consensus 81 ~t~GARe~KfavMhal~~-------------------~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~ 141 (382)
T COG1103 81 VTAGAREAKFAVMHALCK-------------------EGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEG 141 (382)
T ss_pred ecccchhhHHHHHHHhcc-------------------CCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHH
Confidence 677888777766655322 22358888999999999999999999999963 679999999
Q ss_pred HHHHHHhhhhcC-CccEEEEe-----cCCccc--------hhh-----hh-----------cCC-CCccEEEEcCcccCC
Q psy852 546 LRQVMQQDETMG-YIPFFVST-----TLGTTS--------CYR-----KS-----------QGI-EYADSFNVNVNKWLL 594 (891)
Q Consensus 546 Le~aI~~d~~~g-~ip~~Vva-----taGTT~--------c~~-----~l-----------dGi-~~aDSIs~d~HK~L~ 594 (891)
..+.|++-..++ ..|.+... +.|... |++ .+ .+- -++|+|.-|+||.|-
T Consensus 142 y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmA 221 (382)
T COG1103 142 YAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMA 221 (382)
T ss_pred HHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchh
Confidence 999999977765 43443332 334433 544 11 221 458999999999999
Q ss_pred cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 595 TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 595 ~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
+..+||++-++.+- -...+.....+....+ ....+.| +|.+..+.+-+++-+. .+. -+..+...+.+++|.
T Consensus 222 As~PiGvl~~~eE~-ae~V~r~Sg~~~~~KE---vellGCT---~rGapivTlmASfP~V-~eR-VkrWdeEv~kaR~fv 292 (382)
T COG1103 222 ASAPIGVLAMSEEW-AEIVLRRSGRAFPKKE---VELLGCT---VRGAPIVTLMASFPHV-VER-VKRWDEEVEKARWFV 292 (382)
T ss_pred ccCCeeEEeehhHH-HHHHHhhcccccccce---eeeeccc---ccCchHHHHHhcCHHH-HHH-HHHHHHHHHHHHHHH
Confidence 99999999887652 1112222212211111 1111111 2333333333332221 111 233456688999999
Q ss_pred HHhccCCCcEEeCC-C-ceeEEEEEecCCc--chhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHH
Q psy852 675 GKVRRDPRFEISND-V-RLGLVCFRLRSEN--NLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLA 749 (891)
Q Consensus 675 ~~L~~~~~~eil~~-~-~~~iV~Fr~~~~~--~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId 749 (891)
+.|.++.+++.++. | +-.++-|.-+... .++.....--|++.|.++|+.=+ ...-...+ .|+ +..+.|+|+
T Consensus 293 ~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI---~~G~Tk~~K~sv-yGl~~Eqve 368 (382)
T COG1103 293 AELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGI---QPGQTKYFKLSV-YGLSWEQVE 368 (382)
T ss_pred HHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcccc---ccCceeEEEEEe-ecCCHHHHH
Confidence 99999999988764 3 3446666653321 01111112245666766665411 11112233 332 467999999
Q ss_pred HHHHHHHHHH
Q psy852 750 YKRSFFVRML 759 (891)
Q Consensus 750 ~li~~L~ei~ 759 (891)
..++++++++
T Consensus 369 ~V~~afkeI~ 378 (382)
T COG1103 369 YVVDAFKEIA 378 (382)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 221
>PLN02822 serine palmitoyltransferase
Probab=98.32 E-value=0.00017 Score=85.13 Aligned_cols=272 Identities=11% Similarity=0.073 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA 522 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka 522 (891)
.-..++.+.+++.+..-+ .++ +++|++ ++..++.+ +.+ +.-+|++....|+++..+
T Consensus 154 ~~~~~Lee~La~~~~~~~--~i~--~s~G~~-a~~sai~a----~~~---------------~gd~Ii~d~~~H~s~~~~ 209 (481)
T PLN02822 154 DVHLDCETKIAKFLGTPD--SIL--YSYGLS-TIFSVIPA----FCK---------------KGDIIVADEGVHWGIQNG 209 (481)
T ss_pred HHHHHHHHHHHHHhCCCC--EEE--ECCHHH-HHHHHHHH----hCC---------------CCCEEEEeCCccHHHHHH
Confidence 345667777777776432 344 344444 44333321 111 223577888899999999
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhc----CCc-cEEEE----ecCCccc--------hhhh----------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETM----GYI-PFFVS----TTLGTTS--------CYRK---------- 575 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~----g~i-p~~Vv----ataGTT~--------c~~~---------- 575 (891)
+.+.+.+++.+|.+ |.++|+..+++.... ... .++|+ ...|... |.++
T Consensus 210 ~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~ 284 (481)
T PLN02822 210 LYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESN 284 (481)
T ss_pred HHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCc
Confidence 99988888888875 567777777653222 112 23333 2234433 4331
Q ss_pred ----hc----------CC--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccc
Q psy852 576 ----SQ----------GI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLS 639 (891)
Q Consensus 576 ----ld----------Gi--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~S 639 (891)
+. |+ ...|-++.+.+|.++.+- |+++ .+++.+.........| ++..+
T Consensus 285 s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G--G~i~-g~~~ii~~~~~~~~~~--------------~fsa~ 347 (481)
T PLN02822 285 SFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG--GFCT-GSARVVDHQRLSSSGY--------------VFSAS 347 (481)
T ss_pred cccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC--eEEE-cCHHHHHHHHhcCCce--------------eeccc
Confidence 11 12 256888999999987433 5554 4433332211111111 11111
Q ss_pred ccccchHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCC-cc-hhhhhhHHHHHHH
Q psy852 640 RRFRSLKLWFVIRTYG-LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSE-NN-LIADQNNRKLLED 716 (891)
Q Consensus 640 Rr~~aL~lW~~L~~lG-~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~-~~-~~~d~ln~~L~~~ 716 (891)
- .++.+.+++..+- .+...+..++..+++++|.+.|++.+++.+..++...++.+++.+. +. ..-....+.+.+.
T Consensus 348 l--Pp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~ 425 (481)
T PLN02822 348 L--PPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADR 425 (481)
T ss_pred c--CHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHH
Confidence 1 1122223322221 1223567788899999999999998888887777888999998542 10 0112345678888
Q ss_pred HH-hCCcEEEee--cccc---CCeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 717 IN-ASGRLHMVP--ASQE---QNDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 717 L~-~~G~~~~s~--s~~~---g~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
|. +.|++.... +... ....+ ++++...|++||+++++.|+++...+
T Consensus 426 Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 426 MLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred HHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 87 778875532 2221 12346 88888889999999999999887543
No 222
>PRK10534 L-threonine aldolase; Provisional
Probab=98.32 E-value=2.2e-05 Score=87.54 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=137.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH--HHH-cCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA--AMM-AFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka--a~l-~gv~v~~Vp~d~~G~mD~~ 544 (891)
++.||+++++.++.+... +.-.|+++...|.+...+ +.. ++++.+.++.++++.+|++
T Consensus 54 v~~~g~~a~~~~l~~~~~-------------------~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 114 (333)
T PRK10534 54 FLPTGTQANLVALLSHCE-------------------RGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLD 114 (333)
T ss_pred EeCchHHHHHHHHHHhcC-------------------CCCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHH
Confidence 567888888888775311 111355777777544443 233 4468888888888999999
Q ss_pred HHHHHHHhhhhc--C-CccEEEEecCCccc-----------hhh-----hhc-----------CC------CCccEEEEc
Q psy852 545 TLRQVMQQDETM--G-YIPFFVSTTLGTTS-----------CYR-----KSQ-----------GI------EYADSFNVN 588 (891)
Q Consensus 545 ~Le~aI~~d~~~--g-~ip~~VvataGTT~-----------c~~-----~ld-----------Gi------~~aDSIs~d 588 (891)
+|++++.+.... + ...++.+...|+.. |.+ .+| +. ...|.+.++
T Consensus 115 ~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s 194 (333)
T PRK10534 115 KVAAKIKPDDIHFARTRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTIC 194 (333)
T ss_pred HHHHhhcccCcCcccceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEE
Confidence 999998652111 1 12222233345543 322 112 11 234777889
Q ss_pred CcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 668 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~ 668 (891)
++|.++.| .|..++.+++.+.........+ +...+ ..++.+.+.+..+ +...+.+++..+
T Consensus 195 ~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~--------------~~~~~--~~~~~~a~~~~~l--~~~~~~~~~~~~ 254 (333)
T PRK10534 195 LSKGLGTP--VGSLLVGNRDYIKRARRWRKMT--------------GGGMR--QAGILAAAGLYAL--KHNVARLQEDHD 254 (333)
T ss_pred eEcCCCCc--ccceEEcCHHHHHHHHHHHHHh--------------CCchh--hHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence 99988877 5755555655433211111000 00000 0111122222222 122355556666
Q ss_pred HHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHH
Q psy852 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDD 747 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ed 747 (891)
.++++.+.|++. ++++. ++..+.+.+++.+. ....+.+.|.++|++...+ ..+ ++.+..+|.++
T Consensus 255 ~r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~~-------~~~~~~~~l~~~gi~v~~~------~~~rl~~~~r~t~e~ 319 (333)
T PRK10534 255 NAAWLAEQLREA-GADVM-RQDTNMLFVRVGEE-------QAAALGEYMRERNVLINAS------PIVRLVTHLDVSREQ 319 (333)
T ss_pred HHHHHHHHHHhC-CCccC-CCCceEEEEECCch-------hHHHHHHHHHHcCeeecCC------ceEEEEEEeCCCHHH
Confidence 788999999986 77765 34788888887521 2456778888999885322 134 66655679999
Q ss_pred HHHHHHHHHHHH
Q psy852 748 LAYKRSFFVRML 759 (891)
Q Consensus 748 Id~li~~L~ei~ 759 (891)
++++++.|++..
T Consensus 320 ~~~~~~~l~~~~ 331 (333)
T PRK10534 320 LAEVVAHWRAFL 331 (333)
T ss_pred HHHHHHHHHHHh
Confidence 999999998543
No 223
>PLN02242 methionine gamma-lyase
Probab=98.32 E-value=2.1e-05 Score=91.12 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=59.2
Q ss_pred EEecCCCChHHHHHH-----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA-----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
|+++...+......+ +..+.+++.++.+ |+++|++++++. .+.+|++..-+|.+|.+-|+++|++
T Consensus 118 Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~ 187 (418)
T PLN02242 118 VVASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELAR 187 (418)
T ss_pred EEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHH
Confidence 666665544444333 2245566666543 899999888653 1347778888899999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++++|.||
T Consensus 188 la~~~gi~livDea~ 202 (418)
T PLN02242 188 IAHEKGVTVVVDNTF 202 (418)
T ss_pred HHHHhCCEEEEECCC
Confidence 999999999999988
No 224
>PRK05957 aspartate aminotransferase; Provisional
Probab=98.31 E-value=9.6e-05 Score=84.57 Aligned_cols=88 Identities=16% Similarity=0.097 Sum_probs=70.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i 220 (891)
.|+++.-.+......+...|.+++.++.|+++.+|+++|++.+++. +-+|+++..+|.||.+-| +++|+++
T Consensus 115 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~klv~~~~p~NPtG~~~~~~~~~~i~~~ 188 (389)
T PRK05957 115 EIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPK------TRAIVTISPNNPTGVVYPEALLRAVNQI 188 (389)
T ss_pred EEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcC------ceEEEEeCCCCCCCcCcCHHHHHHHHHH
Confidence 3666665555555555666889999999988899999999988653 336667778999999988 8899999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++|+++.+|.+|+.+
T Consensus 189 a~~~~~~li~De~y~~~ 205 (389)
T PRK05957 189 CAEHGIYHISDEAYEYF 205 (389)
T ss_pred HHHcCcEEEEeccchhc
Confidence 99999999999999544
No 225
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.31 E-value=8.6e-05 Score=82.95 Aligned_cols=215 Identities=9% Similarity=0.046 Sum_probs=127.9
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe----cCCccc--------hhhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST----TLGTTS--------CYRK 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva----taGTT~--------c~~~ 575 (891)
.|+++...|.+...++.+.+.+++.++. +|+++|++++++.... ..-++++. ..|+.. |.++
T Consensus 102 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~-~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~ 175 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNRGE-RRKLIVTDGVFSMDGDIAPLPQLVALAERY 175 (360)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcccC-CCeEEEEeCCccCCCCCcCHHHHHHHHHHc
Confidence 5777888999999998888888887774 6899999998753211 11222222 223332 4331
Q ss_pred -----hc-----C--------------C--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCC
Q psy852 576 -----SQ-----G--------------I--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGA 628 (891)
Q Consensus 576 -----ld-----G--------------i--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~ 628 (891)
+| | + ...|-+..+.||+++.+ | |+++.. ++.. +.+. ....+.
T Consensus 176 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~-g-G~~~~~-~~~~-~~~~~~~~~~~------- 244 (360)
T TIGR00858 176 GAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY-G-AYVAGS-QALI-DYLINRARTLI------- 244 (360)
T ss_pred CcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc-C-cEEEcC-HHHH-HHHHHhCccce-------
Confidence 11 1 1 13466778999988753 3 665543 3222 2221 111110
Q ss_pred ccccCCcccccc-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhh
Q psy852 629 IDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIAD 707 (891)
Q Consensus 629 ~~~~~~ti~~SR-r~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d 707 (891)
...+- .+....+..+++.+. ...+..++..++++++.+.|++. ++++. ++..+++.+.+.+.
T Consensus 245 -------~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~------ 307 (360)
T TIGR00858 245 -------FSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDN------ 307 (360)
T ss_pred -------ecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCH------
Confidence 00011 111223334444332 23566788889999999999886 46654 44567888887421
Q ss_pred hhHHHHHHHHHhCCcEEEeecc---ccCCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 708 QNNRKLLEDINASGRLHMVPAS---QEQNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 708 ~ln~~L~~~L~~~G~~~~s~s~---~~g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
...+++.++|.+.|++...... ..+...+ ++++.+++++|++++++.|+
T Consensus 308 ~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 308 ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 2356788999889987543211 1234457 99999999999999998763
No 226
>KOG2040|consensus
Probab=98.27 E-value=8e-05 Score=86.68 Aligned_cols=288 Identities=17% Similarity=0.183 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccccc-CCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEeccc
Q psy852 436 SGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKE 514 (891)
Q Consensus 436 ~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~-~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~ 514 (891)
.||+++++ .+.+.|-++-||+-+. ++.|| -..-..+|.+.|.....+.. ..+-+.+++..
T Consensus 578 qGY~~lf~-------~Le~~Lc~iTG~D~~s~QPNsG-A~GEYaGL~~IRaY~~~kge-----------~hRnvClIPvS 638 (1001)
T KOG2040|consen 578 QGYQQLFT-------ELEKDLCEITGFDSFSLQPNSG-AQGEYAGLRVIRAYLESKGE-----------GHRNVCLIPVS 638 (1001)
T ss_pred hhHHHHHH-------HHHHHhheeecccceeecCCCC-cccchhhHHHHHHHHHhccC-----------CcceeEEEeec
Confidence 46666554 4556666666666554 33344 45567778888887654421 24668899999
Q ss_pred chHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc------hh---h-----hhcC
Q psy852 515 AHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS------CY---R-----KSQG 578 (891)
Q Consensus 515 aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~------c~---~-----~ldG 578 (891)
||-..-..|.|.|.++++|.+|.+|.+|..+|++.-++... .+.-++|. .|.|... |. + .+||
T Consensus 639 AHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~-~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDG 717 (1001)
T KOG2040|consen 639 AHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKD-NLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDG 717 (1001)
T ss_pred ccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhh-hhheeEEecccccccccccHHHHHHHHHhcCCEEEecC
Confidence 99998889999999999999999999999999999887644 23333332 2344433 42 2 2555
Q ss_pred C-------------CCccEEEEcCcccCCcccccE-----EEEEeCCccchhhhccCCCccccCCCCCcc---cc---CC
Q psy852 579 I-------------EYADSFNVNVNKWLLTAFDSS-----CLWVADRYKLTSALVVDPLYLQHGHEGAID---YR---HW 634 (891)
Q Consensus 579 i-------------~~aDSIs~d~HK~L~~P~g~G-----~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~---~~---~~ 634 (891)
. -++|---++.||.+..|-|-| =+-+|.. |. +||.+- ++.+ .. ..
T Consensus 718 ANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H--La-------pfLP~H--pVvs~~~~~~~~~~ 786 (1001)
T KOG2040|consen 718 ANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LA-------PFLPSH--PVVSPGRPEDTSPV 786 (1001)
T ss_pred CCccceecccCCccccccceeecccceeeecCCCCCCCCCccchhhh--cc-------ccCCCC--CccCCCCCCCCCCc
Confidence 2 347999999999988876533 3344433 22 222211 0110 01 11
Q ss_pred ccccccccc---chHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEe----cCCcchhh
Q psy852 635 GIPLSRRFR---SLKL-WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRL----RSENNLIA 706 (891)
Q Consensus 635 ti~~SRr~~---aL~l-W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~----~~~~~~~~ 706 (891)
+.-.+-+|. .|++ |+.++.+|..|+...-+-.+-+|+|++++|+++ ++++-....+.|.-.| ++. ....
T Consensus 787 gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~f-K~~a 863 (1001)
T KOG2040|consen 787 GSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPF-KKTA 863 (1001)
T ss_pred cceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhh-cccc
Confidence 111222333 3554 999999999999999999999999999999884 5554333333443222 111 0111
Q ss_pred hhhHHHHHHHHHhCCcEEEeec-cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLEDINASGRLHMVPA-SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 707 d~ln~~L~~~L~~~G~~~~s~s-~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+-....+..+|.+-|+- .|+ ++.-.+.+ +-....-+.+++|+|++++-.+-
T Consensus 864 gieavDvAKRL~DYgFH--aPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIr 916 (1001)
T KOG2040|consen 864 GIEAVDVAKRLMDYGFH--APTMSWPVAGTLMIEPTESEDKAELDRFCDALISIR 916 (1001)
T ss_pred CCcHHHHHHHHHhccCC--CCccccccCCceEeccCccccHHHHHHHHHHHHHHH
Confidence 23355788889887753 222 12222234 44444568889999999987665
No 227
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.27 E-value=9.4e-05 Score=85.77 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=60.5
Q ss_pred EEecCCCChHHH----HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~----kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...|.+.. ..+...+.+++.++.+ |+++|++.+.+. +.+|.+...+|.+|.+.|+++|+++
T Consensus 99 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~l 167 (418)
T TIGR01326 99 IVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAEV 167 (418)
T ss_pred EEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHH
Confidence 666666664432 2334457788888753 899999988654 2366667778899999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++|+++++|.+|+
T Consensus 168 a~~~~i~livD~t~~ 182 (418)
T TIGR01326 168 AHAHGVPLIVDNTFA 182 (418)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999884
No 228
>PRK09064 5-aminolevulinate synthase; Validated
Probab=98.26 E-value=0.00024 Score=81.72 Aligned_cols=262 Identities=10% Similarity=0.047 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++.+.+++.+.. +. .++ .++|+++|..++..++.. .++.+|+.....|.++..++.
T Consensus 93 ~~~l~~~la~~~g~-~~-~~~---~~sG~~an~~ai~~l~~~-----------------~~~~~i~~~~~~h~s~~~~~~ 150 (407)
T PRK09064 93 HVELERELADLHGK-EA-ALV---FTSGYVSNDATLSTLAKL-----------------IPDCVIFSDELNHASMIEGIR 150 (407)
T ss_pred HHHHHHHHHHHhCC-Cc-EEE---ECcHHHHHHHHHHHHhCC-----------------CCCCEEEEeCcchHHHHHHHH
Confidence 34555666666653 32 233 345678888877665421 023356777778999988887
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhhh-----hc-----C-----
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYRK-----SQ-----G----- 578 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~~-----ld-----G----- 578 (891)
+.+.++..++. .|+++|++.++.........+++.... |+.. |.++ +| |
T Consensus 151 ~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~ 225 (407)
T PRK09064 151 RSRCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPR 225 (407)
T ss_pred HcCCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCC
Confidence 77777666654 278899998874321111122222222 3322 3331 11 1
Q ss_pred ---------C-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHH
Q psy852 579 ---------I-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 579 ---------i-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
+ +..|-+..+.+|.++.+ | |+++. +++.+ +.+. ....|. ++.. .-+..+...
T Consensus 226 g~g~~~~~~~~~~~div~~t~sKa~g~~-G-G~~~~-~~~~~-~~l~~~~~~~~------------~t~~-~~~~~~~aa 288 (407)
T PRK09064 226 GGGIAERDGLMDRIDIIEGTLAKAFGVM-G-GYIAG-SAALV-DAVRSYAPGFI------------FTTS-LPPAIAAAA 288 (407)
T ss_pred CCChHHhcCCCCCCeEEEEecchhhhcc-C-ceEec-CHHHH-HHHHHhCcccc------------ccCc-CCHHHHHHH
Confidence 1 23466767889988754 2 55443 33222 2111 111111 0100 112223334
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEe
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMV 726 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s 726 (891)
..+++.+... ....++..+++++|.+.|++. +++++. +..+++.|.+.. +.....+.++|.+ .|++...
T Consensus 289 ~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~------~~~~~~l~~~L~~~~gi~v~~ 358 (407)
T PRK09064 289 LASIRHLKES--NEERERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGD------PEKCKKASDMLLEEHGIYVQP 358 (407)
T ss_pred HHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCC------HHHHHHHHHHHHHhCCEEEee
Confidence 4555554433 234567788999999999885 566654 346777777632 1345678888865 5877432
Q ss_pred ec--c-ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 727 PA--S-QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 727 ~s--~-~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.. . ..+...+ ++++..+|++|+|+++++|+++.+
T Consensus 359 ~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 359 INYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred ECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 21 1 1244567 999999999999999999998763
No 229
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.26 E-value=0.0001 Score=82.34 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=68.5
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++..+|.+...++.+.+.+++.++. +|+++|++.+++.. +..+.+|+....++.+|.+.|+++|.++|++
T Consensus 102 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~ 174 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAPLPQLVALAER 174 (360)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcCHHHHHHHHHH
Confidence 4777788999999888777778877763 68999999887532 1124566666677899999999999999999
Q ss_pred cCCceeeecccc
Q psy852 224 FDVWLHVDGAYA 235 (891)
Q Consensus 224 ~~~~lHvDaA~G 235 (891)
+|+++.+|.+++
T Consensus 175 ~~~~li~De~~~ 186 (360)
T TIGR00858 175 YGAWLMVDDAHG 186 (360)
T ss_pred cCcEEEEECccc
Confidence 999999999994
No 230
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.25 E-value=4.8e-05 Score=82.82 Aligned_cols=270 Identities=14% Similarity=0.078 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH-----
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----- 518 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----- 518 (891)
--..+...++-.|.+.++ |++. .++|..|+.-.+.|-.+..+.+ .+++|+..-.-
T Consensus 77 lp~~lgdklApLiGA~~~-Evvv---~dtts~nl~k~L~aalr~~~~r----------------~vIv~E~~~fpTdly~ 136 (407)
T COG3844 77 LPERLGDKLAPLIGARAG-EVVV---TDTTSINLFKVLAAALRPQEGR----------------RVIVSEGDNFPTDLYI 136 (407)
T ss_pred chhHHHHHhhhhhcCCCC-ceEE---eCCcchHHHHHHHHHhccCCCc----------------eEEeecCCCCCcchhh
Confidence 334566777888887777 5552 2345566666555544332211 24444443221
Q ss_pred HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe-----cCCccc------hhh------------h
Q psy852 519 VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST-----TLGTTS------CYR------------K 575 (891)
Q Consensus 519 v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva-----taGTT~------c~~------------~ 575 (891)
.+--+.+.++ --|..+++.|.+++++++++.+ +|+. -.|... |.. |
T Consensus 137 a~g~~~~~~~-----~~~~~~~~~P~~~~~~~~dd~A------vV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAH 205 (407)
T COG3844 137 AEGLADLLGI-----GYDLEGVIAPRALEEAITDDVA------VVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAH 205 (407)
T ss_pred hcchhhhhcc-----cccceeeeChHHHHHhhccceE------EEEeccccccccceeeHHHHHHHHHhcCceEEeehhc
Confidence 1112223322 2355678889999999998743 2221 123221 222 2
Q ss_pred hcC-------CCCccEEEEcCcccC-CcccccEEEEEeCCccchhhhccCCCccccCCCCCcccc-CC-ccccccccc--
Q psy852 576 SQG-------IEYADSFNVNVNKWL-LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYR-HW-GIPLSRRFR-- 643 (891)
Q Consensus 576 ldG-------i~~aDSIs~d~HK~L-~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~-~~-ti~~SRr~~-- 643 (891)
-.| -.+||+-..|.||+| ++|-+.+.+++.++. .......-..|+.+... +... .+ ..++.|+|.
T Consensus 206 saGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h-~e~~~~~lsgW~gha~p--f~m~~~y~p~~ga~rf~~g 282 (407)
T COG3844 206 SAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRH-RERSWPPLSGWWGHARP--FAMEEVYAPGPGARRFLCG 282 (407)
T ss_pred ccCCcceeecccCCCeeeeeeceeccCCCCCceeEEecccc-ccccccccccccCCCCc--chhhhccCcCccccceeeC
Confidence 222 256899999999999 567777788876552 22222223456554321 1000 01 123344444
Q ss_pred ------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-C--CcEEeCCC----ceeEEEEEecCCcchhhhhhH
Q psy852 644 ------SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-P--RFEISNDV----RLGLVCFRLRSENNLIADQNN 710 (891)
Q Consensus 644 ------aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~-~--~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln 710 (891)
...+-.+|...+.-++.+.-++.+.|+.+|.+.++.. + ++++..|. .-+-|+|.++ ..
T Consensus 283 t~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp---------~~ 353 (407)
T COG3844 283 TQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP---------HG 353 (407)
T ss_pred CcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC---------cH
Confidence 2355667777888889999999999999999999875 3 57777654 3478999985 45
Q ss_pred HHHHHHHHhCCcEEEeeccccCCeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPASQEQNDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
.++.+.|.+.|++ ...+...++ |.+.+ |++-+||-.+++.|+++.+
T Consensus 354 ~~V~qaLi~rGVi----gD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~ 401 (407)
T COG3844 354 YQVMQALIDRGVI----GDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLD 401 (407)
T ss_pred HHHHHHHHHcCcc----ccccCCCeeeecCccceechhHHHHHHHHHHHHHH
Confidence 7899999999998 666677788 88877 8999999999999998874
No 231
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.24 E-value=0.00011 Score=85.35 Aligned_cols=80 Identities=11% Similarity=-0.018 Sum_probs=58.6
Q ss_pred EEecCCCChHHHHHH-HH---cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA-MM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa-~~---~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...+......+ .. .+.++..++. .|+++|++.+++.+ .+|.+...+|.+|.+-|+++|.++
T Consensus 100 Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~~t------klV~lesp~NPtG~v~dl~~I~~l 168 (425)
T PRK06084 100 IVSVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDERT------KAVFCESIGNPAGNIIDIQALADA 168 (425)
T ss_pred EEEeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhccCC------cEEEEeCCCCCCCeecCHHHHHHH
Confidence 555555554444433 22 2445555543 38999999987643 367778888999999999999999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++++++.+|.||+
T Consensus 169 a~~~~i~vVvD~a~a 183 (425)
T PRK06084 169 AHRHGVPLIVDNTVA 183 (425)
T ss_pred HHHcCCEEEEECCCc
Confidence 999999999999984
No 232
>PRK08363 alanine aminotransferase; Validated
Probab=98.23 E-value=0.0001 Score=84.50 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=68.6
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEE-ecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKIL-EPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V-~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-++.+....+...+.+++.+ +.+++ +.+|++.|++.+.+. +-+|+++..+|.||.+-+ +++|+
T Consensus 119 ~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~ 192 (398)
T PRK08363 119 EILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEK------TKAIAVINPNNPTGALYEKKTLKEIL 192 (398)
T ss_pred EEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcCcCHHHHHHHH
Confidence 47777778888888777666677777 56655 469999999887543 236666788999999877 88999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|.||+.
T Consensus 193 ~~a~~~~~~li~Deay~~ 210 (398)
T PRK08363 193 DIAGEHDLPVISDEIYDL 210 (398)
T ss_pred HHHHHcCeEEEEhhhhhh
Confidence 999999999999999954
No 233
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.22 E-value=0.00024 Score=81.82 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 445 HCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 445 ~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
..++.+.+++.+.. +. .++ + ++|+++|..++...-. . .+..+|+++...|.++..++.
T Consensus 93 ~~~Le~~la~~~g~-~~-~i~--~-~sG~~a~~~~i~~l~~-----~------------~~g~~vi~~~~~h~s~~~~~~ 150 (410)
T PRK13392 93 HVLLERELADLHGK-ES-ALL--F-TSGYVSNDAALSTLGK-----L------------LPGCVILSDALNHASMIEGIR 150 (410)
T ss_pred HHHHHHHHHHHhCC-CC-EEE--E-CcHHHHHHHHHHHHhc-----C------------CCCCEEEEehhhhHHHHHHHH
Confidence 34666777777764 33 334 2 3457888777653211 0 012367778889999988888
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hc-----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQ----------- 577 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ld----------- 577 (891)
+.|.+++.++.+ |.++|++.++.........+++.. ..|+.. |.++ +|
T Consensus 151 ~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~ 225 (410)
T PRK13392 151 RSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGAR 225 (410)
T ss_pred HcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCC
Confidence 888887776542 567777777653221222223322 234433 3321 11
Q ss_pred --C-------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHH
Q psy852 578 --G-------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLW 648 (891)
Q Consensus 578 --G-------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW 648 (891)
| .+.+|-++.+.+|+++.+- |++.. +++...........|.. +... -+.....+.
T Consensus 226 g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~~-~~~~~~~l~~~~~~~~~------------s~~~-~~~~~~a~~ 289 (410)
T PRK13392 226 GGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYIAA-SADLIDFVRSFAPGFIF------------TTAL-PPAVAAGAT 289 (410)
T ss_pred CCchhhhccCCCCCcEEEEEChHhhhccc--chhhc-CHHHHHHHHHhCcchhc------------cCcC-CHHHHHHHH
Confidence 1 1245766778999888753 44433 33322211112222211 0000 011122333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEee
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVP 727 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~ 727 (891)
.+|+.+.. .....++..++++++.+.|++. ++++. +++.+++.+.+. . +....++.++|. +.|++....
T Consensus 290 aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~-~-----~~~~~~~~~~L~~~~GI~v~~~ 359 (410)
T PRK13392 290 AAIRHLKT--SQTERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVG-D-----PTLCKAISDRLMSEHGIYIQPI 359 (410)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeC-C-----HHHHHHHHHHHHHhCCEEEeee
Confidence 44544332 2344566788899999999885 67654 455677666653 1 223567888886 578774322
Q ss_pred --cc-ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 --AS-QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 --s~-~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. ..+...+ ++++...|++|+|+++++|+++.
T Consensus 360 ~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~ 395 (410)
T PRK13392 360 NYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIW 395 (410)
T ss_pred CCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 11 1244567 99999999999999999998875
No 234
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.21 E-value=1.6e-05 Score=90.42 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=138.6
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCCCccccc
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDN 256 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~ 256 (891)
+|++++++++++.+ -+|.+...+|.+|.+-|+++|+++|+++|+++.+|.||+..+..
T Consensus 124 ~d~~~l~~~i~~~T------klV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~---------------- 181 (364)
T PRK07269 124 NTEEELIAAIEEDT------DIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ---------------- 181 (364)
T ss_pred CCHHHHHHhcCcCc------eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC----------------
Confidence 58999999987543 48888889999999999999999999999999999998321100
Q ss_pred CCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEE
Q psy852 257 LHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLH 336 (891)
Q Consensus 257 ~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (891)
T Consensus 182 -------------------------------------------------------------------------------- 181 (364)
T PRK07269 182 -------------------------------------------------------------------------------- 181 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--ceEEEEeccccchhhcccCccccCCCCCCcccccccc
Q psy852 337 VDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 414 (891)
Q Consensus 337 ~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~--~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 414 (891)
++. . ..+|-+..+.||++.++-+ .|+++.++...... +.. +.. ..
T Consensus 182 ---------------~pl-~--~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~-~~~---~~~----------~~- 228 (364)
T PRK07269 182 ---------------RPI-E--LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEK-LFY---NLN----------TT- 228 (364)
T ss_pred ---------------Cch-h--hCCcEEEecCceeccCCCcccceEEEeCcHHHHHH-HHH---HHH----------Hh-
Confidence 000 0 1479999999999998876 67777766532221 110 000 00
Q ss_pred cCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhcc
Q psy852 415 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKI 494 (891)
Q Consensus 415 ~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~ 494 (891)
+-...++..|..++.+.. +..++++..++|..+++.|.++|.++-+.-+-.||.-+....-..+-.++....+
T Consensus 229 ---G~~~s~~~a~l~~~~L~t--L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~-- 301 (364)
T PRK07269 229 ---GAVLSPFDSYLLMRGLKT--LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADETRIPHILNSLK-- 301 (364)
T ss_pred ---CCCCCHHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCHHHHHHHHHhCC--
Confidence 112356778877766654 8889999999999999999999987655533334433322210111112222221
Q ss_pred Cccccccccc---cceEEEecccchHHHHHHHHH-cCc--eEEEecCCCCCCcCHHHHHHHHHh
Q psy852 495 HPFVDEGVLL---SKLMAYCSKEAHSCVEKAAMM-AFV--RLKILEPDDKNSLRGATLRQVMQQ 552 (891)
Q Consensus 495 ~~~~~~g~~~---~~~vI~~S~~aH~Sv~Kaa~l-~gv--~v~~Vp~d~~G~mD~~~Le~aI~~ 552 (891)
...-+... ..+++......|..+..-.+. .|+ .++++-+ |.=|+++|.+=|++
T Consensus 302 --~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsv---GlE~~~dli~dl~~ 360 (364)
T PRK07269 302 --VFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSI---GIEDARDLIADLKQ 360 (364)
T ss_pred --cceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEe---ccCCHHHHHHHHHH
Confidence 11111111 122232334566655433332 343 5677766 55567777655544
No 235
>PLN02483 serine palmitoyltransferase
Probab=98.21 E-value=0.0005 Score=81.41 Aligned_cols=223 Identities=11% Similarity=0.094 Sum_probs=132.3
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcC--------CccEEEEec----CCccc----
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMG--------YIPFFVSTT----LGTTS---- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g--------~ip~~Vvat----aGTT~---- 571 (891)
.|++.+..|.|+..++++.|.+++.+|.+ |+++|++.|++....+ ...++++.. .|+..
T Consensus 187 ~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~ 261 (489)
T PLN02483 187 LIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPE 261 (489)
T ss_pred EEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHH
Confidence 58899999999999999999999999864 5788888876532211 012333321 23332
Q ss_pred ----hhhh-----h-------------------cCC--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCc
Q psy852 572 ----CYRK-----S-------------------QGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLY 620 (891)
Q Consensus 572 ----c~~~-----l-------------------dGi--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Y 620 (891)
|+++ + -++ ..+|-+..+++|.++.+ | |+++ .+++.+. .+. ....+
T Consensus 262 I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~-G-G~i~-~~~~li~-~l~~~~~~~ 337 (489)
T PLN02483 262 IVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC-G-GYIA-GSKELIQ-YLKRTCPAH 337 (489)
T ss_pred HHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC-c-eEEE-cCHHHHH-HHHHhCccc
Confidence 3321 0 111 34688888999998753 3 5554 4443332 222 11111
Q ss_pred cccCCCCCccccCCcccccccccchHHHHHHHHH-HH---hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE
Q psy852 621 LQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-GL---SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF 696 (891)
Q Consensus 621 l~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-G~---~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F 696 (891)
.... + .-+..+...-.+|+.+ +. +-..++.++..+++++|.+.|++. ++++..+....++.+
T Consensus 338 ~~~~----------~---~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l 403 (489)
T PLN02483 338 LYAT----------S---MSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPI 403 (489)
T ss_pred cccC----------C---cCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEE
Confidence 1000 0 0001111111223322 11 223456778889999999999987 777776555567666
Q ss_pred EecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc----cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 697 RLRSENNLIADQNNRKLLEDINASGRLHMVPASQ----EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 697 r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~----~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+... .....+.+.|.++|+.++. ... .+...+ ++++...|++|||++++.|+++..
T Consensus 404 ~l~~~------~~~~~~~~~Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~ 465 (489)
T PLN02483 404 MLYNP------AKIPAFSRECLKQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGD 465 (489)
T ss_pred EECCH------HHHHHHHHHHHHCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 65321 2344678888888987552 221 222456 999988899999999999998874
No 236
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.21 E-value=0.00015 Score=82.68 Aligned_cols=83 Identities=7% Similarity=0.078 Sum_probs=69.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC-cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g-~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.+++|+++ .+|+++|++.+++.+ -+|+.+ +.+|...|+.+|.++|+
T Consensus 73 ~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~t------k~i~~~---~~~G~~~~~~~i~~la~ 143 (375)
T PRK11706 73 EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKT------RAIVPV---HYAGVACEMDTIMALAK 143 (375)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCC------eEEEEe---CCCCCccCHHHHHHHHH
Confidence 48888899999999988888899999999774 799999999886532 244443 35799999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|+++.+|+|++
T Consensus 144 ~~~i~vIeD~a~a 156 (375)
T PRK11706 144 KHNLFVVEDAAQG 156 (375)
T ss_pred HcCCEEEEECccc
Confidence 9999999999983
No 237
>PRK06460 hypothetical protein; Provisional
Probab=98.20 E-value=5.2e-05 Score=86.64 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=50.6
Q ss_pred HHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 157 KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 157 kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
..+...|.+++.++.+++ +.+++.+++ .+-+|.+...+|.+|.+-|+++|+++|+++|+++++|.||+
T Consensus 103 ~~~~~~G~~v~~~~~~~~-----~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~ 170 (376)
T PRK06460 103 DYLKNWGVNVDASNPGSD-----NIIEKAKSK------RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS 170 (376)
T ss_pred HHHHhhCcEEEEECCCCH-----HHHHHhcCC------CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC
Confidence 444556778888876532 334333322 24578889999999999999999999999999999999883
No 238
>KOG2040|consensus
Probab=98.20 E-value=4.7e-05 Score=88.50 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCeEEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc-cCHHHHHH
Q psy852 141 SKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-DNLAEIGP 219 (891)
Q Consensus 141 ~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-Dpl~~I~~ 219 (891)
.+-+.+++..+|-....++.++|.+++.|.+|.+|.||..+|++..++...+ -..+.+|.-+|. |.+ ..|.+|++
T Consensus 629 hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~---Laa~MvTYPST~-GvfE~~i~d~cd 704 (1001)
T KOG2040|consen 629 HRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDN---LAALMVTYPSTH-GVFEEGIDDICD 704 (1001)
T ss_pred cceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhh---hheeEEeccccc-ccccccHHHHHH
Confidence 3556777788999998888899999999999999999999999998876543 468888998775 666 56999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+.+++|--+-.|||-
T Consensus 705 ~iHehGGQVYlDGAN 719 (1001)
T KOG2040|consen 705 IIHEHGGQVYLDGAN 719 (1001)
T ss_pred HHHhcCCEEEecCCC
Confidence 999998777777765
No 239
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.19 E-value=0.00021 Score=83.46 Aligned_cols=83 Identities=7% Similarity=0.063 Sum_probs=67.9
Q ss_pred eEEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
-.|+++..+|.+...++...|..++.+++| .++.+|++++++.+...+ .+|+++. ..|...++++|.++|
T Consensus 112 d~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~t------kaVi~~~---~~G~p~dl~~I~~la 182 (438)
T PRK15407 112 DEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKT------KAIMIAH---TLGNPFDLAAVKAFC 182 (438)
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCC------eEEEEeC---CCCChhhHHHHHHHH
Confidence 348888999999998887778899999987 578899999999886543 3444443 256678999999999
Q ss_pred HHcCCceeeeccc
Q psy852 222 KEFDVWLHVDGAY 234 (891)
Q Consensus 222 ~~~~~~lHvDaA~ 234 (891)
+++|++|.+|+|+
T Consensus 183 ~~~gi~vIeDaa~ 195 (438)
T PRK15407 183 DKHNLWLIEDNCD 195 (438)
T ss_pred HHCCCEEEEECcc
Confidence 9999999999988
No 240
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=98.19 E-value=0.00014 Score=83.46 Aligned_cols=163 Identities=10% Similarity=-0.015 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..|.+...+...+-..+ .+.......+++.++.+.|++++|.+.+.. .+
T Consensus 53 ~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v-----------------------------~~ 101 (413)
T cd00610 53 NHPEVVEALKEQLAKLT--HFSLGFFYNEPAVELAELLLALTPEGLDKV-----------------------------FF 101 (413)
T ss_pred CCHHHHHHHHHHHHhCc--CccCcccCCHHHHHHHHHHHHhCCCCCCEE-----------------------------EE
Confidence 45666665555542211 111111235667777888888887432211 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcC------------CeEEEEecCC---
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF------------VRLKILEPDD--- 173 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~------------~~v~~V~~d~--- 173 (891)
+.||+. .+...+.++|.... .+-+++....-|.+..-++.+.+ .+++.+|.+.
T Consensus 102 ~~sgse-a~~~al~~~~~~~~-----------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (413)
T cd00610 102 VNSGTE-AVEAALKLARAYTG-----------RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYR 169 (413)
T ss_pred cCcHHH-HHHHHHHHHHHHcC-----------CCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCcccc
Confidence 467765 45555555664311 12345555666777665554322 2466777663
Q ss_pred ---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 174 ---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 174 ---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+...|++.|++.+++. +..+.+|+++-..+.+|.+-| +++|.++|++||+++++|-+++|+
T Consensus 170 ~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~ 237 (413)
T cd00610 170 PPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF 237 (413)
T ss_pred chhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3456999999988753 223567777878888899887 999999999999999999999763
No 241
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=98.18 E-value=0.00022 Score=81.76 Aligned_cols=271 Identities=11% Similarity=0.052 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
...++++.+.+.+..... +++ ++.||+|+|..++..+|.... .+.+++....-|-+..-+.
T Consensus 80 ~~~~l~~~l~~~~~~~~~-~v~--~~~sgsea~~~al~~~~~~~~----------------~~~ii~~~~~yhg~~~~~~ 140 (413)
T cd00610 80 PAVELAELLLALTPEGLD-KVF--FVNSGTEAVEAALKLARAYTG----------------RKKIISFEGAYHGRTLGAL 140 (413)
T ss_pred HHHHHHHHHHHhCCCCCC-EEE--EcCcHHHHHHHHHHHHHHHcC----------------CCeEEEECCCcCCccHHHH
Confidence 345666666666652122 455 678999999999999885311 2235556666776665554
Q ss_pred HHcC------------ceEEEecCCC------CCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc----------
Q psy852 524 MMAF------------VRLKILEPDD------KNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS---------- 571 (891)
Q Consensus 524 ~l~g------------v~v~~Vp~d~------~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~---------- 571 (891)
.+.+ .++..+|.++ +...|+++|++++++.. +.+-++++ .+.|.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~vi~~p~~~~~G~~~~~~~~l~~l~ 218 (413)
T cd00610 141 SLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP--EEVAAVIVEPIQGEGGVIVPPPGYLKALR 218 (413)
T ss_pred HhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC--CCEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 4322 2456666653 34458888888887521 12222222 2234432
Q ss_pred --hhhh-----hc----CC-------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCC
Q psy852 572 --CYRK-----SQ----GI-------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 627 (891)
Q Consensus 572 --c~~~-----ld----Gi-------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~ 627 (891)
|.++ +| |. -..|-++++ |+++.++++|+++.+++ +.+.+. ...+..
T Consensus 219 ~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~s--K~l~~g~~~g~~~~~~~--~~~~~~-~~~~~~----- 288 (413)
T cd00610 219 ELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLG--KGLGGGLPLGAVLGREE--IMDAFP-AGPGLH----- 288 (413)
T ss_pred HHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEc--ccccCccccEEEEEcHH--HHHhhc-cCCCCC-----
Confidence 3321 11 11 023666554 99998888999887533 222220 000000
Q ss_pred CccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC-cEEe--CCCceeEEEEEecCCcc-
Q psy852 628 AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPR-FEIS--NDVRLGLVCFRLRSENN- 703 (891)
Q Consensus 628 ~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~-~eil--~~~~~~iV~Fr~~~~~~- 703 (891)
..+.. +-+........+++.+... +..++..++.+++.+.|++... ..++ ......++++.+.+...
T Consensus 289 -----~~t~~-~~~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 359 (413)
T cd00610 289 -----GGTFG-GNPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRAT 359 (413)
T ss_pred -----CCCCC-cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCc
Confidence 00111 1122233445556655543 4556677778888888776421 1121 12345678888754210
Q ss_pred -hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 704 -LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 704 -~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
..-......+.+.|.+.|+.+..+. ...+ ++++...|++||+++++.|+++
T Consensus 360 ~~~~~~~~~~~~~~l~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 360 KPPDKELAAKIIKAALERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEA 412 (413)
T ss_pred CCcchHHHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 0001245678888999998743332 3456 8888888999999999998764
No 242
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=0.00018 Score=81.75 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=67.3
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
-|+++..+=.+...+....|.+.+.|++|. .+.||++.+|++|.+.++ -++.|=.+ |..=|+++|.++|+
T Consensus 76 eVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tK----AIipVhl~-----G~~~dm~~i~~la~ 146 (374)
T COG0399 76 EVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTK----AIIPVHLA-----GQPCDMDAIMALAK 146 (374)
T ss_pred EEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCe----EEEEehhc-----cCCCCHHHHHHHHH
Confidence 488888888888888877888999999995 499999999999998753 13333333 44559999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
+||++|--|+|+
T Consensus 147 ~~~l~vIEDaAq 158 (374)
T COG0399 147 RHGLPVIEDAAQ 158 (374)
T ss_pred HcCCeEEEEcch
Confidence 999999999988
No 243
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.17 E-value=4.1e-05 Score=87.78 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=104.9
Q ss_pred HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCcc
Q psy852 160 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239 (891)
Q Consensus 160 ~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~ 239 (891)
...|.+++.+++++...++++ .. .+-+|....-+|.++.+.|+++|+++|++++ +.||+|+|..+.
T Consensus 125 ~~~Gi~v~fvd~~~~~~~~l~-------~~-----~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~ 190 (384)
T PRK06434 125 KTLGIHVDYIDTDRLNSLDFD-------PS-----NYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN 190 (384)
T ss_pred HhcCcEEEEECCCChhheeec-------CC-----CeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc
Confidence 446789999998754444321 11 1347777888889999999999999999998 457999843221
Q ss_pred ccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccc
Q psy852 240 ICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET 319 (891)
Q Consensus 240 ~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (891)
.
T Consensus 191 ~------------------------------------------------------------------------------- 191 (384)
T PRK06434 191 Q------------------------------------------------------------------------------- 191 (384)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCC--ceEEEEeccccchhhcccCc
Q psy852 320 RGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDP 397 (891)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~--~g~~~~r~~~~~~~~~~~~~ 397 (891)
+++ . ..+|-+.+++||++.+|-+ .|+++.++...... +.
T Consensus 192 --------------------------------~pl-~--~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~-~~--- 232 (384)
T PRK06434 192 --------------------------------NPL-D--LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNN-LV--- 232 (384)
T ss_pred --------------------------------Cch-h--cCCCEEEeecccccCCCCCceEEEEecCcHHHHHH-HH---
Confidence 000 0 1479999999999988876 67777665432111 10
Q ss_pred cccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 398 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 398 ~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
.+.. .+ +.....+..|..+ .|.+-+..++++..++|..+++.|.++|.++-+
T Consensus 233 -~~~~---------~~----G~~~~~~~A~l~~--~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V 284 (384)
T PRK06434 233 -ERRK---------TL----GSNPDPIQAYLAL--RGLKTLGLRMEKHNKNGMELARFLRDSKKISNV 284 (384)
T ss_pred -HHHH---------hc----CCCCCHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 0000 00 1112355666554 466677889999999999999999999987544
No 244
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.17 E-value=9.9e-05 Score=83.80 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=61.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+-.++..++...|.+++.+++| +++.||+++|++.|.+.++ .|++ +...|...|+.+|.++|+
T Consensus 67 eVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~------ai~~---~h~~G~~~d~~~i~~~~~ 137 (363)
T PF01041_consen 67 EVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTK------AILV---VHLFGNPADMDAIRAIAR 137 (363)
T ss_dssp EEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEE------EEEE---E-GGGB---HHHHHHHHH
T ss_pred eEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCcc------EEEE---ecCCCCcccHHHHHHHHH
Confidence 48899999999999998888999999999 7899999999999998753 3332 244566779999999999
Q ss_pred HcCCceeeeccc
Q psy852 223 EFDVWLHVDGAY 234 (891)
Q Consensus 223 ~~~~~lHvDaA~ 234 (891)
++|++|--|+|+
T Consensus 138 ~~~i~lIeD~a~ 149 (363)
T PF01041_consen 138 KHGIPLIEDAAQ 149 (363)
T ss_dssp HTT-EEEEE-TT
T ss_pred HcCCcEEEcccc
Confidence 999999999988
No 245
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.17 E-value=7.7e-06 Score=93.98 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=187.0
Q ss_pred HHHHHHHhhccC-CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HH
Q psy852 448 LAKLFEGKVRRD-PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KA 522 (891)
Q Consensus 448 lAr~l~~~L~~~-~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Ka 522 (891)
+.+.+++.+... +. +|+ +++|+|+++..++.+...... .+.-.|+++..+|++.. ..
T Consensus 72 ~r~~la~~~~~~~~~-~v~--~t~g~t~~l~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~ 133 (406)
T PRK09295 72 VRKQAALFINARSAE-ELV--FVRGTTEGINLVANSWGNSNV---------------RAGDNIIISEMEHHANIVPWQML 133 (406)
T ss_pred HHHHHHHHcCcCCCC-eEE--EeCCHHHHHHHHHHHhhhhcC---------------CCcCEEEECcchhhHHHHHHHHH
Confidence 334677777653 33 666 778999998877655322111 12235888899987653 34
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC---------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI--------- 579 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi--------- 579 (891)
+...|++++.+|.+++|.+|+++|+++++++++ .+ ...+.+..|+.. |++ .+|++
T Consensus 134 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~--lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~ 211 (406)
T PRK09295 134 CARVGAELRVIPLNPDGTLQLETLPALFDERTR--LLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVD 211 (406)
T ss_pred HHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcE--EEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccC
Confidence 456789999999999999999999999976422 11 112234456654 433 13331
Q ss_pred ---CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC---------CCccccCCccc-ccccc-cch
Q psy852 580 ---EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE---------GAIDYRHWGIP-LSRRF-RSL 645 (891)
Q Consensus 580 ---~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e---------~~~~~~~~ti~-~SRr~-~aL 645 (891)
..+|.+++++|| +++|.|+|+++++++. + +.+ +.+...+.. ..+......++ ++... ..+
T Consensus 212 ~~~~~~D~~~~s~~K-~~gp~G~G~l~~~~~~-~-~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~ 285 (406)
T PRK09295 212 VQALDCDFYVFSGHK-LYGPTGIGILYVKEAL-L-QEM---PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGII 285 (406)
T ss_pred chhcCCCEEEeehhh-ccCCCCcEEEEEchHh-H-hhC---CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHH
Confidence 247999999999 5569999999998652 1 111 111111100 00000011122 12222 246
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
.++.+++.+...|++++.++..++++++.+.|+++++++++.+ ...++|+|.+++. ..+.+.+.|.+.|+..
T Consensus 286 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~-------~~~~~~~~L~~~gI~v 358 (406)
T PRK09295 286 GLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------HAYDVGSFLDNYGIAV 358 (406)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCc-------CHHHHHHHHHhCCeEE
Confidence 7888888888889999999999999999999999999999875 3468999998643 3466788888899887
Q ss_pred Eeecccc--------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MVPASQE--------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s~s~~~--------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+++.+. ...++ +|++.++|++|||+++++|+++.
T Consensus 359 ~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 359 RTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred eccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 6665332 12457 99999999999999999999875
No 246
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.16 E-value=0.00028 Score=80.13 Aligned_cols=219 Identities=11% Similarity=0.090 Sum_probs=124.5
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc--------hhhh
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS--------CYRK 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~--------c~~~ 575 (891)
.|+++...|.+...++.+.++++..++ .+|+++|++.|.+..... .-++++.. .|... |+++
T Consensus 119 ~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~-~~~v~~~~v~~~tG~~~~~~~i~~l~~~~ 192 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPSYG-KKLIVTDGVFSMDGDVAPLPEIVELAERY 192 (385)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhccCC-CeEEEEecCCcCCCCccCHHHHHHHHHHh
Confidence 577888899999888877777666553 588999999887643212 22333332 23222 4331
Q ss_pred -----hc-----C--------------C-CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCc
Q psy852 576 -----SQ-----G--------------I-EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAI 629 (891)
Q Consensus 576 -----ld-----G--------------i-~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~ 629 (891)
+| | + ...|....+.||+++.+- |+++. +++.+. .+. ....|...
T Consensus 193 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g--G~~~~-~~~~~~-~~~~~~~~~~~~------ 262 (385)
T TIGR01825 193 GAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG--GYAAG-HKELIE-YLKNRARPFLFS------ 262 (385)
T ss_pred CCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC--CEEec-CHHHHH-HHHHhCcccccc------
Confidence 11 1 1 234666789999997643 55543 333222 221 11112100
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhh
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQN 709 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~l 709 (891)
. ...+.....+..+++.+.. ..+..++..++++++.+.|++. ++++.. +..+++.+.+.+. ..
T Consensus 263 ---~----~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~------~~ 325 (385)
T TIGR01825 263 ---T----AQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTGG-SETPITPVVIGDE------KA 325 (385)
T ss_pred ---C----CCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEECCH------HH
Confidence 0 0001111222233332211 2345666778899999999875 676653 3445666665321 23
Q ss_pred HHHHHHHHHhCCcEEEeec---cccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPA---SQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s---~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+.+.|.++|++..... ...+...+ ++++..++++||+++++.|++++
T Consensus 326 ~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 326 AQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred HHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4678888888898743211 11233456 88888999999999999999876
No 247
>PRK02948 cysteine desulfurase; Provisional
Probab=98.16 E-value=9e-05 Score=84.25 Aligned_cols=272 Identities=13% Similarity=0.136 Sum_probs=173.2
Q ss_pred HHHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH
Q psy852 446 CELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM 524 (891)
Q Consensus 446 lelA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~ 524 (891)
++.+ +.+++.+...+. +|+ +++|+++++..++.+...... .+..+|+++..+|+|...++.
T Consensus 45 ~~~~r~~la~~~g~~~~-~i~--~~~g~t~a~~~~~~~~~~~~~---------------~~g~~vv~~~~~h~s~~~~~~ 106 (381)
T PRK02948 45 LQVCRKTFAEMIGGEEQ-GIY--FTSGGTESNYLAIQSLLNALP---------------QNKKHIITTPMEHASIHSYFQ 106 (381)
T ss_pred HHHHHHHHHHHhCCCCC-eEE--EeCcHHHHHHHHHHHHHHhcc---------------CCCCEEEECCcccHHHHHHHH
Confidence 3444 366666654444 566 678899999988776543210 123468899999999877764
Q ss_pred ---HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh-----hhcCC------
Q psy852 525 ---MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-----KSQGI------ 579 (891)
Q Consensus 525 ---l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-----~ldGi------ 579 (891)
..|.+++.+|++++|.+|+++|++++++.+ ..+++. +..|+.. |++ ++|+.
T Consensus 107 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~----~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~ 182 (381)
T PRK02948 107 SLESQGYTVTEIPVDKSGLIRLVDLERAITPDT----VLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL 182 (381)
T ss_pred HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCC----EEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcccc
Confidence 458899999999899999999999986532 122222 2334443 333 23321
Q ss_pred ------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 580 ------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 580 ------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
..+|.+++++||++ +|.|+|+++++++..+.+.... ...+.. +..++.. ....+.+-.+++.
T Consensus 183 ~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~------~~~~~~--~~~~t~~---~~~~~a~~~al~~ 250 (381)
T PRK02948 183 PIDVFEMGIDSLSVSAHKIY-GPKGVGAVYINPQVRWKPVFPG------TTHEKG--FRPGTVN---VPGIAAFLTAAEN 250 (381)
T ss_pred ccCcccCCCCEEEecHHhcC-CCCcEEEEEEcCCCCCCCcccC------CCCCCC--cCCCCcc---HHHHHHHHHHHHH
Confidence 24799999999975 5999999999876322111000 000000 0001110 0112333444443
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe--CCC---ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS--NDV---RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil--~~~---~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s 728 (891)
+ .+.+++..++..+++++|.+.|++. ++++. +++ ...+++|.+.+. ...++...|.++|+....++
T Consensus 251 ~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~l~~~gI~v~~g~ 321 (381)
T PRK02948 251 I-LKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGI-------EGQYTMLECNRRGIAISTGS 321 (381)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCC-------CHHHHHHhcccCCEEEEchH
Confidence 3 2467888899999999999999987 34432 222 235788887643 24567777888898876554
Q ss_pred ccc-------------------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 729 SQE-------------------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 729 ~~~-------------------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+. ....+ +|++.++|++|+|+++++|+++.+
T Consensus 322 ~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 322 ACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN 373 (381)
T ss_pred hcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 321 23567 999999999999999999998764
No 248
>PRK08912 hypothetical protein; Provisional
Probab=98.15 E-value=0.00041 Score=79.20 Aligned_cols=87 Identities=10% Similarity=-0.064 Sum_probs=71.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
.|++..-+|.....++...|.+++.+++++ ++.+|+++|++.+... +-+|+++..+|.||.+-+ +++|++
T Consensus 113 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~ 186 (387)
T PRK08912 113 EVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAE 186 (387)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 477777888888888877788999999974 6789999999987543 236666788999999876 667899
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++++++.+|.+|+.
T Consensus 187 ~~~~~~~~ii~De~y~~ 203 (387)
T PRK08912 187 FCQRHDAVAICDEVWEH 203 (387)
T ss_pred HHHHCCeEEEEhhhhhh
Confidence 99999999999999953
No 249
>PLN02452 phosphoserine transaminase
Probab=98.14 E-value=4.3e-05 Score=87.03 Aligned_cols=264 Identities=13% Similarity=0.043 Sum_probs=155.7
Q ss_pred cccCCCCC-CHHHHHHHHHHHhcCCCCC------ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q psy852 21 HAYFPSGN-SYPSVLADMLSDAIGCIGF------SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDID 93 (891)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~l~~~~n~~~~------~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~ 93 (891)
+.+-|.+. ..+.++..+...++|.++. ...-+|.+.++-.++.+.|.++++.|++.. -+|
T Consensus 9 ~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~-------v~~------ 75 (365)
T PLN02452 9 FNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYE-------VLF------ 75 (365)
T ss_pred EeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCce-------EEE------
Confidence 34444333 5588999999888764421 123478888999999999999999976521 011
Q ss_pred ccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHH---HHHHHHcCCeEEEEe
Q psy852 94 MNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCV---EKAAMMAFVRLKILE 170 (891)
Q Consensus 94 ~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv---~kaa~~~~~~v~~V~ 170 (891)
..+|||.+--+..+++.+.. .+ +.|++ ...++- ..+.+++...++. .
T Consensus 76 --------------l~Gsgt~~~ea~~~nl~~~~-------------~~-~l~~~-~G~fg~r~~~~a~~~g~~~~~~-~ 125 (365)
T PLN02452 76 --------------LQGGASTQFAAIPLNLCKPG-------------DK-ADFVV-TGSWSKKAAKEAKKYCKTNVIA-S 125 (365)
T ss_pred --------------EeCccHHHHHHHHHhcCCCC-------------Ce-EEEEE-CCHHHHHHHHHHHHhCCCcEEE-e
Confidence 23667654333344442211 11 23332 344443 2233445433332 2
Q ss_pred cCCCC---cccHHHHHHHHHhhhhcCCcceEEEeecccCcccc-ccCHHHHHHHHHHcCCceeeeccccCCccccCCCCc
Q psy852 171 PDDKN---SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCS-FDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRP 246 (891)
Q Consensus 171 ~d~~g---~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Ga-vDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~ 246 (891)
....+ ..++++++ .+ ..+-.|.+|+-.|.+|. +.|+.++.+ +.+.||++..
T Consensus 126 ~~~~~~~~~~~~~~~~----~~----~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss----------- 180 (365)
T PLN02452 126 GKDEKYTKIPSVSEWE----LT----PDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSN----------- 180 (365)
T ss_pred cCCCCCCCCCChHHcC----CC----CCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCcc-----------
Confidence 22222 45666642 11 11458999999999999 699988863 6788999771
Q ss_pred cCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccc
Q psy852 247 FMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSY 326 (891)
Q Consensus 247 ~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (891)
.++..+++.
T Consensus 181 ----------------------~g~~pidv~------------------------------------------------- 189 (365)
T PLN02452 181 ----------------------FLSKPVDVS------------------------------------------------- 189 (365)
T ss_pred ----------------------ccCcccCHH-------------------------------------------------
Confidence 111111100
Q ss_pred cccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCC
Q psy852 327 RDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEG 406 (891)
Q Consensus 327 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~ 406 (891)
..+-+..+.||.+ +|-|.|++++|++..- ..-...|.|+.....
T Consensus 190 ---------------------------------~~~v~~~saqK~l-GP~Gl~~v~vr~~~l~-~~~~~~~~~~~~~~~- 233 (365)
T PLN02452 190 ---------------------------------KYGVIYAGAQKNV-GPSGVTIVIIRKDLIG-NARPITPGMLDYKIH- 233 (365)
T ss_pred ---------------------------------HcCEEEEeccccc-CCCCeEEEEEcHHHHh-hcccCCCchhhHHHH-
Confidence 0122336999966 6999999999976321 111223444432211
Q ss_pred cccccccccCCCCCh-hHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcc
Q psy852 407 AIDYRHWGIPLSRRF-RSLKLWFVIRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRF 462 (891)
Q Consensus 407 ~~~~~~~~~~~sr~~-~~l~~w~~l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~ 462 (891)
....+..++-+. ....+-.+++++-.+ |+..+.++..++++++++.|.+.++|
T Consensus 234 ---~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~ 288 (365)
T PLN02452 234 ---AENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF 288 (365)
T ss_pred ---HhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 001122233333 345778889988776 89999999999999999999988876
No 250
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.13 E-value=6.4e-05 Score=85.58 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=55.7
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...++.....+. ..|.+++.|+.++++. .+.+. +-+|.+..-+|.+|.+.|+++|++
T Consensus 91 ~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~--------~~~~~------t~lV~le~p~NPtg~v~di~~I~~ 156 (366)
T PRK07582 91 TVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE--------AALAG------ADLVLAETPSNPGLDVCDLAALAA 156 (366)
T ss_pred EEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH--------HhccC------ceEEEEECCCCCCCCccCHHHHHH
Confidence 37776777766655442 2467888888765431 11122 236667788889999999999999
Q ss_pred HHHHcCCceeeeccc
Q psy852 220 VAKEFDVWLHVDGAY 234 (891)
Q Consensus 220 i~~~~~~~lHvDaA~ 234 (891)
+|+++|+++.||+||
T Consensus 157 ~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 157 AAHAAGALLVVDNTT 171 (366)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999988
No 251
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.11 E-value=0.00018 Score=82.86 Aligned_cols=218 Identities=15% Similarity=0.152 Sum_probs=112.2
Q ss_pred EEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.+++|...|+.....++ ..+++++.+|.++++.+| +++ +..+++ ++.|... +
T Consensus 156 ~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~-----~a~v~vq~Pn~~G~~ed~~~i~~~~ 222 (429)
T PF02347_consen 156 KVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDD-----TAAVMVQNPNTFGVFEDIKEIADIA 222 (429)
T ss_dssp EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STT-----EEEEEEESS-TTSB--THHHHHHHH
T ss_pred EEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccC-----eEEEEeecCCCCceEeeHHHHHHHH
Confidence 49999999987766553 368899999999888888 222 111222 2344443 1
Q ss_pred hhh------------hc-----CCCCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCCCCCcc
Q psy852 573 YRK------------SQ-----GIEYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEGAID 630 (891)
Q Consensus 573 ~~~------------ld-----Gi~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~ 630 (891)
+++ +- |--+||-+ +.-||-++.|.+ +|.+-+|+. +.+.+-+.--....+.++.
T Consensus 223 h~~gal~~~~ad~~aL~~l~~Pge~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~lPGRiVG~t~D~~G~-- 297 (429)
T PF02347_consen 223 HAAGALVIVGADPNALGGLKSPGEYGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQLPGRIVGQTKDADGK-- 297 (429)
T ss_dssp HHTT-EEEECGGCCGCCTC--GGGGT-SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS-S-EEEEEEBCCCS--
T ss_pred HHcCCEEEEecCHHHHhCcCChhhcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhCCCceeccccccccc--
Confidence 110 11 12347888 778999999976 677888776 3322211100000000111
Q ss_pred ccCCcc--c----cccc------------ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee
Q psy852 631 YRHWGI--P----LSRR------------FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG 692 (891)
Q Consensus 631 ~~~~ti--~----~SRr------------~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~ 692 (891)
..+.+ + --|| +-++..|..+..+|.+|+++..++++.+|.|+.++|++..++.+.+++-..
T Consensus 298 -~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e 376 (429)
T PF02347_consen 298 -RAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFE 376 (429)
T ss_dssp -CCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSS
T ss_pred -ceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcee
Confidence 11111 1 1111 114577888999999999999999999999999999997333333332223
Q ss_pred EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 693 LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 693 iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
.|.....+ ....++.++....| +.. ...... .+ +++.-.+|++|||++++++
T Consensus 377 ~v~~~~~~-------~~~~~l~~~~~~~g-l~~--~~~~~~-~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 377 FVVVFSKD-------KEVEELLKRGIEGG-LNL--RYPDDG-ALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EEEEESS--------HHHHHHHHTT-----EEE--GGG-SS-EEEEE--TT--HHHHHHHHH--
T ss_pred eeeecCCc-------HHHHHHHHHHHhcC-CCc--cccCCC-eEEEEccCCCCHHHHHHHHhcC
Confidence 33333321 12223555555566 212 222233 56 9999999999999999865
No 252
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.11 E-value=0.00092 Score=76.93 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=128.4
Q ss_pred eEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhh---------cCCccEEEEecC----Cccc--
Q psy852 507 LMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDET---------MGYIPFFVSTTL----GTTS-- 571 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~---------~g~ip~~Vvata----GTT~-- 571 (891)
-.|++++..|.|+..++.+.+.+++.++.. |.+++++.++.... .....++++-+. |...
T Consensus 83 D~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l 157 (392)
T PLN03227 83 DLLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPL 157 (392)
T ss_pred CEEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCH
Confidence 368999999999988887777777776653 34555554433211 011222332222 3222
Q ss_pred ------hhhh-----hc----------------------CCCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC
Q psy852 572 ------CYRK-----SQ----------------------GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP 618 (891)
Q Consensus 572 ------c~~~-----ld----------------------Gi~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~ 618 (891)
|+++ +| ....+|-++.+.+|+++ |. |.+++.+++.. +.+..
T Consensus 158 ~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~--gg~v~~~~~~~-~~~~~-- 231 (392)
T PLN03227 158 KELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV--GGMTVGSEEVV-DHQRL-- 231 (392)
T ss_pred HHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc--CcEEecCHHHH-HHHHH--
Confidence 3331 11 12456999999999876 43 33333333222 11110
Q ss_pred CccccCCCCCccccCCcccccccccchHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhccC--C-------CcEEeCC
Q psy852 619 LYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY-GLSGLQKYIRRHCELAKLFEGKVRRD--P-------RFEISND 688 (891)
Q Consensus 619 ~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l-G~~G~~~~i~~~~~lA~~L~~~L~~~--~-------~~eil~~ 688 (891)
+ .+ ..++ +-...++-.|+++..+ ....-.+.+++..+++++|.+.|++. + ++.+...
T Consensus 232 -~-~~---------~~~~--~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~ 298 (392)
T PLN03227 232 -S-GS---------GYCF--SASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSD 298 (392)
T ss_pred -h-Cc---------Cccc--cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCC
Confidence 0 00 0111 1111233345555433 32334567888899999999999752 2 1122233
Q ss_pred CceeEEEEEecCCcchh---hhhhHHHHHHHHHhCCcEEEe-ec------cccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 689 VRLGLVCFRLRSENNLI---ADQNNRKLLEDINASGRLHMV-PA------SQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 689 ~~~~iV~Fr~~~~~~~~---~d~ln~~L~~~L~~~G~~~~s-~s------~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+..+++.+.+.+..... -+.....+.+.|.++|++... +. .......+ ++++...|+||||+++++|++
T Consensus 299 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~ 378 (392)
T PLN03227 299 PISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGE 378 (392)
T ss_pred CCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678888885321000 011335888899999987532 11 11223456 999999999999999999999
Q ss_pred HHHH
Q psy852 758 MLGL 761 (891)
Q Consensus 758 i~~~ 761 (891)
++..
T Consensus 379 ~~~~ 382 (392)
T PLN03227 379 AVEA 382 (392)
T ss_pred HHHH
Confidence 8753
No 253
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.09 E-value=0.0012 Score=76.16 Aligned_cols=160 Identities=9% Similarity=0.035 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
..+.+...+....-+.....|.......++-+.+.+|+++..|++.... +.++ .
T Consensus 54 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~------------~~I~--------------i 107 (405)
T PRK06207 54 PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAA------------DELI--------------I 107 (405)
T ss_pred CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------------CCEE--------------E
Confidence 3455665555544332222333333456788889999999999753210 1111 2
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC-----CCCcccHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-----DKNSLRGATLR 183 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-----~~g~id~~~L~ 183 (891)
|+|++ +.....+.. -.. +...|++..-+++.....+...|.+++.|+++ .+..+|+++|+
T Consensus 108 t~Ga~-~al~~~~~~-l~~-------------~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~ 172 (405)
T PRK06207 108 TPGTQ-GALFLAVAA-TVA-------------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE 172 (405)
T ss_pred eCCcH-HHHHHHHHH-hcC-------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHH
Confidence 34443 322211111 111 12236666677777777777778899999886 35789999999
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCceeeecccc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lHvDaA~G 235 (891)
+.+.+.. -+|+.+.-+|.||.+-+ +++|+++|++++++|.+|-+|+
T Consensus 173 ~~~~~~~------k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~ 221 (405)
T PRK06207 173 EAFKAGV------RVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYS 221 (405)
T ss_pred HhhhhcC------eEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 9886542 36677777999999987 6778888999999999999994
No 254
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.09 E-value=1.4e-05 Score=90.36 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=180.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----H
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----A 522 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----a 522 (891)
++.+.+++.+...+.-+++ +++|+++++..++.+..... .+...|+++..+|++... .
T Consensus 47 ~~~~~la~~~~~~~~~~v~--~~~g~t~a~~~~~~~l~~~~----------------~~g~~vl~~~~~~~~~~~~~~~~ 108 (373)
T cd06453 47 AAREKVARFINAPSPDEII--FTRNTTEAINLVAYGLGRAN----------------KPGDEIVTSVMEHHSNIVPWQQL 108 (373)
T ss_pred HHHHHHHHHhCCCCCCeEE--EeCCHHHHHHHHHHHhhhcC----------------CCCCEEEECcchhHHHHHHHHHH
Confidence 3444666666543222455 67899999887776643310 022358889999998643 3
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh-----hhcC--------
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR-----KSQG-------- 578 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~-----~ldG-------- 578 (891)
+...|.+++.||.+.++.+|+++|++.++++. ..+++.. ..|+.. |++ ++|+
T Consensus 109 ~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~ 184 (373)
T cd06453 109 AERTGAKLKVVPVDDDGQLDLEALEKLLTERT----KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMP 184 (373)
T ss_pred HhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc----eEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCcee
Confidence 44668899999999999999999999997632 1222222 245543 443 2232
Q ss_pred --C--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC--------CCccccCCccc-cccc-ccc
Q psy852 579 --I--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE--------GAIDYRHWGIP-LSRR-FRS 644 (891)
Q Consensus 579 --i--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e--------~~~~~~~~ti~-~SRr-~~a 644 (891)
+ ..+|++++++|||++. .++|+++++++. +. .+. .+..++.. ..+......+. ++.. ...
T Consensus 185 ~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~-~~-~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 258 (373)
T cd06453 185 VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEEL-LE-EMP---PYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGA 258 (373)
T ss_pred eeccccCCCEEEeccccccCC-CCcEEEEEchHH-hh-cCC---CeecCCCccccccccccccCCCccccCCCCCCHHHH
Confidence 1 2589999999999887 789988887542 21 111 11111000 00000000111 1111 235
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 645 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 645 L~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
+.+|.+++.+...|++++.++..++++++.+.|+++++++++.++ ..++++|++.+. ...++.+.|.+.|+
T Consensus 259 ~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~~gi 331 (373)
T cd06453 259 IGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILDQYGI 331 (373)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHHHCCE
Confidence 788999999999999999999999999999999999999988543 467889988532 34678889988898
Q ss_pred EEEeeccc--------cCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 723 LHMVPASQ--------EQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 723 ~~~s~s~~--------~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
.+..+..+ .....+ ++++..+|++|||+++++|
T Consensus 332 ~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 332 AVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 75443321 123456 9999999999999999764
No 255
>PRK06108 aspartate aminotransferase; Provisional
Probab=98.09 E-value=0.00046 Score=78.34 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=144.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC---CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD---KN 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~---~G 539 (891)
+|+ ++.|+++++..++.+... +.-.|++..-.|......+...|++++.+|.+. ++
T Consensus 86 ~i~--~t~g~~~al~~~~~~l~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 144 (382)
T PRK06108 86 RIA--VTSSGVQALMLAAQALVG-------------------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGW 144 (382)
T ss_pred eEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCc
Confidence 455 678888887776654311 112366677788888888888899999999863 35
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc----------C------CCC---
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ----------G------IEY--- 581 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld----------G------i~~--- 581 (891)
.+|+++|++.++... ..++++ +-.|++. |.++ +| + ...
T Consensus 145 ~~d~~~l~~~~~~~~----~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 220 (382)
T PRK06108 145 TLDLDRLLAAITPRT----RALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEP 220 (382)
T ss_pred cCCHHHHHHhcCccc----eEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCC
Confidence 799999999886421 122222 2345442 3221 11 1 000
Q ss_pred --ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HH
Q psy852 582 --ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GL 656 (891)
Q Consensus 582 --aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~ 656 (891)
-.-+..+.+|.++.| ..+|+++...+ .+ +.+.....|.. .+ ...+.+.++...+ +.
T Consensus 221 ~~~~i~~~S~SK~~g~~G~RiG~~~~~~~-~~-~~~~~~~~~~~-----------~~------~~~~~q~a~~~~l~~~~ 281 (382)
T PRK06108 221 DDRIIFVNSFSKNWAMTGWRLGWLVAPPA-LG-QVLEKLIEYNT-----------SC------VAQFVQRAAVAALDEGE 281 (382)
T ss_pred cCCEEEEeechhhccCcccceeeeeCCHH-HH-HHHHHHHHhcc-----------cC------CChHHHHHHHHHHhCCh
Confidence 123456899977644 56899988543 22 22211001100 00 0112222222333 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCC
Q psy852 657 SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQN 733 (891)
Q Consensus 657 ~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~ 733 (891)
+-+++..++..++.+++.+.|++.+++++..+.....+.+++.+. .....+.+.|. +.|+.+..+... .+.
T Consensus 282 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~ 355 (382)
T PRK06108 282 DFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGV------TDSLALAKRLVDEAGLGLAPGTAFGPGGE 355 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCC------CCHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 445677778888899999999888888876543344556677532 13457777775 578875544432 234
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ ++++. ++++++++++.|++.+
T Consensus 356 ~~~Ris~~~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 356 GFLRWCFAR--DPARLDEAVERLRRFL 380 (382)
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 566 88876 7899999988887654
No 256
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.07 E-value=0.0008 Score=79.03 Aligned_cols=250 Identities=12% Similarity=0.075 Sum_probs=137.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-HHcCceEEEecCCC---------
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPDD--------- 537 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~l~gv~v~~Vp~d~--------- 537 (891)
++.||++++.+++.+. . ..++ |+++ ..|+....+. .+.|.+++.+|+++
T Consensus 98 ~t~ggt~A~~~~~~al----l--------------~pGD--Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~ 156 (460)
T PRK13238 98 PTHQGRAAEQILFPVL----I--------------KKGD--VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHP 156 (460)
T ss_pred ECCCHHHHHHHHHHHh----C--------------CCCC--EEcc-CCcccchHHHHHHcCCEEEEEecccccccccccc
Confidence 6789999998886542 1 1123 4444 3477665554 57888999998853
Q ss_pred -CCCcCHHHHHHHHHhhhhcCCccEEEE----ecCC-ccc-----------hhhh-----hcC-----------------
Q psy852 538 -KNSLRGATLRQVMQQDETMGYIPFFVS----TTLG-TTS-----------CYRK-----SQG----------------- 578 (891)
Q Consensus 538 -~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataG-TT~-----------c~~~-----ldG----------------- 578 (891)
.|.+|+++|+++|.+.... .+.++++ +..| +.. |.+| .|+
T Consensus 157 f~g~id~e~Le~~i~~~~~~-~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~ 235 (460)
T PRK13238 157 FKGNFDLEKLEALIEEVGAE-NVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGY 235 (460)
T ss_pred ccCCcCHHHHHHHHhhcCCC-ceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccc
Confidence 2559999999999863211 2333332 2334 332 4331 121
Q ss_pred ------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC---CCccccCCCCCccccCCccccccccc
Q psy852 579 ------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD---PLYLQHGHEGAIDYRHWGIPLSRRFR 643 (891)
Q Consensus 579 ------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~---~~Yl~~~~e~~~~~~~~ti~~SRr~~ 643 (891)
...+|++++++||.+++|.| |+++.++.+.....-... ..++ .++-...+...
T Consensus 236 ~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~g~~-----------t~~g~~~~~~~ 303 (460)
T PRK13238 236 KDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYEGFP-----------TYGGLAGRDME 303 (460)
T ss_pred cCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccccCCcc-----------cccCcHHHHHH
Confidence 03489999999999999997 888888754333211010 1111 01111111111
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc----chhhhhhHHHHHHHHH-
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN----NLIADQNNRKLLEDIN- 718 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~----~~~~d~ln~~L~~~L~- 718 (891)
|+. ..|+..-. ...++...+.+++|.+.|++. ++.++.+....-|...+.... .+..+ ...+..+|.
T Consensus 304 Ala--~~l~e~~~---~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~--~~~~a~~L~~ 375 (460)
T PRK13238 304 ALA--VGLYEGMD---EDYLAYRIGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQFP--AQALACELYL 375 (460)
T ss_pred HHH--hhHHHhhC---hHHHHHHHHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCCc--hHHHHHHHHH
Confidence 111 11111101 123334455679999999885 888887655444444443210 01111 356666664
Q ss_pred hCCcEEEeecc-------ccC------CeEE-EEecC-CCCHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPAS-------QEQ------NDEV-FELQE-RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 719 ~~G~~~~s~s~-------~~g------~~~l-~sv~~-~tT~edId~li~~L~ei~ 759 (891)
+.|+..+-+.. ..+ ...+ +++.. --|.+++|.+++.|+++.
T Consensus 376 e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 376 EAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred HcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 57776433221 111 2455 77655 349999999999999876
No 257
>PRK07777 aminotransferase; Validated
Probab=98.06 E-value=0.00066 Score=77.53 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=95.3
Q ss_pred ccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhc
Q psy852 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQ 127 (891)
Q Consensus 48 ~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~ 127 (891)
.|...+...++...+.+++.+..|++...- +. + ..|+||+..-.+.+. +...
T Consensus 56 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~------~~------i--------------~~t~G~~~al~~~~~--~~~~ 107 (387)
T PRK07777 56 QYPPGPGIPELRAAIAAQRRRRYGLEYDPD------TE------V--------------LVTVGATEAIAAAVL--GLVE 107 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------Cc------E--------------EEeCCcHHHHHHHHH--HhcC
Confidence 344445567888888999998888753210 00 1 134566432111111 1111
Q ss_pred cccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC---CcccHHHHHHHHHhhhhcCCcceEEEeecc
Q psy852 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---NSLRGATLRQVMQQDETMGYIPFFVSTTLG 204 (891)
Q Consensus 128 ~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~---g~id~~~L~~~l~~~~~~g~~p~~V~~t~G 204 (891)
+...|++..-.|.+...++...+.+++.++.+++ +.+|+++|++.+.+. +-+|+++..
T Consensus 108 -------------~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p 168 (387)
T PRK07777 108 -------------PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSP 168 (387)
T ss_pred -------------CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCC
Confidence 1123666666777777777777788999998765 469999999988643 235566677
Q ss_pred cCcccccc---CHHHHHHHHHHcCCceeeeccccCC
Q psy852 205 TTSCCSFD---NLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 205 tt~~GavD---pl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|.||.+- ++++|+++|+++++++.+|-+|+++
T Consensus 169 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~ 204 (387)
T PRK07777 169 HNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHL 204 (387)
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhc
Confidence 89999974 5889999999999999999999543
No 258
>PRK09082 methionine aminotransferase; Validated
Probab=98.06 E-value=5.6e-05 Score=86.37 Aligned_cols=142 Identities=7% Similarity=0.012 Sum_probs=99.2
Q ss_pred cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhcc
Q psy852 49 WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQK 128 (891)
Q Consensus 49 ~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~ 128 (891)
|.......+++..+.+++.+++|.+.... .. + ..|+||+. .....+. +-..
T Consensus 63 Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~-----~~-i--------------------~~t~G~~~-al~~~~~-~~~~- 113 (386)
T PRK09082 63 YPPMTGVAALREAIAAKTARLYGRQYDAD-----SE-I--------------------TVTAGATE-ALFAAIL-ALVR- 113 (386)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCC-----Cc-E--------------------EEeCCHHH-HHHHHHH-HHcC-
Confidence 33344567889999999999998753210 00 0 12456642 2221111 1111
Q ss_pred ccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCc
Q psy852 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS 207 (891)
Q Consensus 129 ~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~ 207 (891)
+...|++..-+|.+...++...|.+++.++++. ++.+|+++|++.+++. +.+|+++.-+|.
T Consensus 114 ------------~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NP 175 (386)
T PRK09082 114 ------------PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPR------TRLIILNTPHNP 175 (386)
T ss_pred ------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCcc------ceEEEEeCCCCC
Confidence 122477778899999888877788999999974 5789999999988643 335666667899
Q ss_pred cccc---cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 208 CCSF---DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 208 ~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
||.+ +++++|+++|+++++++++|.+|+.+
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~ 208 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHI 208 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhh
Confidence 9977 88999999999999999999999644
No 259
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=98.06 E-value=8.1e-05 Score=85.69 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=169.9
Q ss_pred HhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCce
Q psy852 454 GKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVR 529 (891)
Q Consensus 454 ~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~ 529 (891)
+.+...++ +|+ +++|+|+++..++... + +.. .++.+|+++..+|.|+..++ ...|++
T Consensus 80 ~l~g~~~~-~v~--~~~~~t~~l~~~~~~~---~-~~~------------~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~ 140 (406)
T TIGR01814 80 RLVGAKED-EVV--VMNTLTINLHLLLASF---Y-KPT------------PKRYKILLEAKAFPSDHYAIESQLQLHGLT 140 (406)
T ss_pred cccCCCCC-cEE--EeCCchHHHHHHHHHh---c-CCc------------CCccEEEecCCCCChHHHHHHHHHHhcCCC
Confidence 55665554 566 6778899888776543 1 000 01336889999999865543 345666
Q ss_pred E----EEecCCCCCCcCHHHHHHHHHhhhhc-CCc-cEEEEecCCccc--------hhhh-----hcCC-----------
Q psy852 530 L----KILEPDDKNSLRGATLRQVMQQDETM-GYI-PFFVSTTLGTTS--------CYRK-----SQGI----------- 579 (891)
Q Consensus 530 v----~~Vp~d~~G~mD~~~Le~aI~~d~~~-g~i-p~~VvataGTT~--------c~~~-----ldGi----------- 579 (891)
+ +.++.+.+|.+|++++++.++....+ ..+ ...|....|... |+++ +|++
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~ 220 (406)
T TIGR01814 141 VEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLH 220 (406)
T ss_pred cccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccc
Confidence 6 57777778999999999998643211 111 112333456655 4442 3331
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCcc------ccCCccc-ccccc-cchHHHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID------YRHWGIP-LSRRF-RSLKLWFV 650 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~------~~~~ti~-~SRr~-~aL~lW~~ 650 (891)
..+|.+++++||||++|.| |.++++.+.. .........|........++ .....++ ++-.. ..+.+-.+
T Consensus 221 ~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~a 298 (406)
T TIGR01814 221 DWGVDFACWCTYKYLNAGPG-AGAFVHEKHA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGS 298 (406)
T ss_pred cCCCCEEEEcCccccCCCCC-eEEEEehhhh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHH
Confidence 2489999999999987768 6677655432 11100111221111000000 0000111 11111 12455667
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccC----CCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 651 IRTYGLSGLQKYIRRHCELAKLFEGKVRRD----PRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 651 L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~----~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
++.+-..|++++.++...+++++.+.|++. ++++++++. ..++|+|.++ . ..+.+.+.|.++|+
T Consensus 299 l~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~-------~~~~~~~~L~~~gi 370 (406)
T TIGR01814 299 LDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V-------PGKAVFQALIKRGV 370 (406)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C-------CHHHHHHHHHHCCE
Confidence 777777889999999999999999999875 468888753 2468999985 2 24678888988898
Q ss_pred EEEeeccccCCeEE-EEe-cCCCCHHHHHHHHHHHHHHH
Q psy852 723 LHMVPASQEQNDEV-FEL-QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 723 ~~~s~s~~~g~~~l-~sv-~~~tT~edId~li~~L~ei~ 759 (891)
+.. ......+ +|+ +.+||++|||+++++|++++
T Consensus 371 ~v~----~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 371 IGD----KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred EEe----ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 632 2333467 998 68999999999999998764
No 260
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.05 E-value=2.4e-05 Score=89.61 Aligned_cols=277 Identities=13% Similarity=0.096 Sum_probs=183.6
Q ss_pred HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HHHHH
Q psy852 450 KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAAMM 525 (891)
Q Consensus 450 r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Kaa~l 525 (891)
+.+++.++..+.=+++ +++|+++++..++.+...... .+...|+++..+|++.. +++..
T Consensus 69 ~~ia~~~~~~~~~~v~--~~~g~t~~l~~~~~~~~~~~~---------------~~g~~vl~~~~~~~s~~~~~~~~~~~ 131 (403)
T TIGR01979 69 EKVAKFINAASDEEIV--FTRGTTESINLVAYSWGDSNL---------------KAGDEIVISEMEHHANIVPWQLLAER 131 (403)
T ss_pred HHHHHHhCcCCCCeEE--EeCCHHHHHHHHHHHhhhhcC---------------CCCCEEEECcchhhHHHHHHHHHHHh
Confidence 4566666654222566 678889997776655432111 12346889999988754 44556
Q ss_pred cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC----------
Q psy852 526 AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi---------- 579 (891)
.|++++.+|++++|.+|+++|+++++++++ .+++. +..|+.. |+++ +|+.
T Consensus 132 ~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~----lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~ 207 (403)
T TIGR01979 132 TGATLKFIPLDDDGTLDLDDLEKLLTEKTK----LVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDV 207 (403)
T ss_pred cCcEEEEEecCCCCCCCHHHHHHHhccCCe----EEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCc
Confidence 789999999999999999999999976422 22222 2345543 3331 3321
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCC--------CCCccccCCccc-ccccc-cchHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGH--------EGAIDYRHWGIP-LSRRF-RSLKL 647 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~--------e~~~~~~~~ti~-~SRr~-~aL~l 647 (891)
..+|.+++++||++ +|.|+|+++++++ .+ +.+. .+...+. ...+....+.++ ++... ..+.+
T Consensus 208 ~~~~~d~~~~s~~K~~-gp~G~g~l~~~~~-~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 281 (403)
T TIGR01979 208 QALDCDFYVFSGHKMY-GPTGIGVLYGKEE-LL-EQMP---PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGL 281 (403)
T ss_pred cccCCCEEEEeccccc-CCCCceEEEEchH-HH-hcCC---CeecCCCceeecccCccccCCChhhcCCCCccHHHHHHH
Confidence 24899999999976 5999999998765 22 1111 1111000 000000111122 12222 24678
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----RLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+.+++.+...|++++.++..++++++.++|+++++++++.+. ..++++|++.+. ...++.+.|.+.|+.
T Consensus 282 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI~ 354 (403)
T TIGR01979 282 GAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVGTILDEEGIA 354 (403)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHHHHHhhCCEE
Confidence 888888888899999999999999999999999999998654 368999998643 245677888888987
Q ss_pred EEeeccc--------cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQ--------EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~~s~s~~--------~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
...++.+ .....+ +|++.++|++|||+++++|+++..
T Consensus 355 v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 355 VRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred EcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 5543311 113457 999999999999999999998764
No 261
>PRK05968 hypothetical protein; Provisional
Probab=98.05 E-value=0.0003 Score=80.79 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=107.1
Q ss_pred EEEecccchHHHH----HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------h
Q psy852 508 MAYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~----Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c 572 (891)
.|+++...|.+.. +.+...|++++.++.+ |+++|++++. . ...+++.+..|.+. |
T Consensus 104 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-~----tklV~ie~pt~~~~~~~dl~~i~~la 173 (389)
T PRK05968 104 RIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKALP-G----AKLLYLESPTSWVFELQDVAALAALA 173 (389)
T ss_pred EEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhcc-c----CCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 3666666666533 3445578888888754 7888888773 1 12344444444442 2
Q ss_pred hhh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|+ + .++|.+..++||++++|-+ .|+++ .+++.+.........++.
T Consensus 174 ~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g------------ 240 (389)
T PRK05968 174 KRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLG------------ 240 (389)
T ss_pred HHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCC------------
Confidence 221 222 1 2579999999999999865 46554 444333221111111110
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc------------eeEEEEEecCCc
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR------------LGLVCFRLRSEN 702 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~------------~~iV~Fr~~~~~ 702 (891)
. ....+..|.. ..+.+.+..++++..++++++.+.|+++|.++.+..|. .++++|.+.+.
T Consensus 241 -~----~~~~~~A~~~--l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~- 312 (389)
T PRK05968 241 -A----KLSPFEAWLL--LRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG- 312 (389)
T ss_pred -C----CCChHHHHHH--HcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-
Confidence 0 1123444544 34666778899999999999999999999987665331 35999999631
Q ss_pred chhhhhhHHHHHHHHHhCC
Q psy852 703 NLIADQNNRKLLEDINASG 721 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~~G 721 (891)
....++.+.|...+
T Consensus 313 -----~~~~~f~~~L~~~~ 326 (389)
T PRK05968 313 -----IDVRAFADALKLFR 326 (389)
T ss_pred -----HHHHHHHHhCCccE
Confidence 23457777776644
No 262
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.04 E-value=2.2e-05 Score=89.86 Aligned_cols=284 Identities=13% Similarity=0.023 Sum_probs=189.0
Q ss_pred HHHHH-HHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH----
Q psy852 445 HCELA-KLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV---- 519 (891)
Q Consensus 445 ~lelA-r~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv---- 519 (891)
.++.+ +.+++.+...+.-+|+ +++|+|+++..++.+..... ..+.-.|+++..+|++.
T Consensus 61 ~~~~~r~~la~~~g~~~~~~i~--~t~g~t~~l~~~~~~~~~~~---------------~~~gd~Vl~~~~~~~s~~~~~ 123 (398)
T TIGR03392 61 RYELARQQVARFLNAPDAENIV--WTRGTTESINLVAQSYARPR---------------LQPGDEIIVSEAEHHANLIPW 123 (398)
T ss_pred HHHHHHHHHHHHhCCCCCCeEE--EeCChHHHHHHHHHHhhhcc---------------CCCCCEEEECCcchhHHHHHH
Confidence 34433 3666777653222566 67899999887776542100 01123588899999874
Q ss_pred HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhhh-----hcCC------
Q psy852 520 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYRK-----SQGI------ 579 (891)
Q Consensus 520 ~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~~-----ldGi------ 579 (891)
...+...|++++.+|++.++.+|+++|+++|++.++ .+ ...+.+..|+.. |+++ +|++
T Consensus 124 ~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~--lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~ 201 (398)
T TIGR03392 124 LMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTR--ILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG 201 (398)
T ss_pred HHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCce--EEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC
Confidence 344466789999999998899999999999976432 11 112234566665 4331 2321
Q ss_pred ------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC------CCccc--cCCccc-ccccc-c
Q psy852 580 ------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE------GAIDY--RHWGIP-LSRRF-R 643 (891)
Q Consensus 580 ------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e------~~~~~--~~~ti~-~SRr~-~ 643 (891)
-.+|.+++++|| +++|.|+|+++++++ .+. .+. .+...+.. ..+.+ ....++ ++..+ .
T Consensus 202 ~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~ 275 (398)
T TIGR03392 202 PPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKTE-LLE-AMP---PWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAG 275 (398)
T ss_pred CCChhhcCCCEEEEeccc-ccCCCceEEEEEcHH-HHh-hCC---CeecCCceEeeccccccccCCChhhccCCCCCHHH
Confidence 147999999999 456889999998755 221 111 11111000 00000 001111 12222 3
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
.+.+..+++.+...|++++.++..++++++.+.|++++++++..++..++++|++.+. .++.+.+.|.++|+.
T Consensus 276 ~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L~~~gI~ 348 (398)
T TIGR03392 276 VIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAESGIA 348 (398)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CHHHHHHHHHhCCEE
Confidence 4678888888888899988899999999999999999999988777788999998643 356788889889988
Q ss_pred EEeecccc--------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQE--------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 724 ~~s~s~~~--------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+..++.+. ...++ +|++.++|++|||+++++|++++.
T Consensus 349 v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 349 LRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred EecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 76665432 13467 999999999999999999998764
No 263
>PLN02656 tyrosine transaminase
Probab=98.04 E-value=8.8e-05 Score=85.54 Aligned_cols=89 Identities=10% Similarity=0.152 Sum_probs=70.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
.|++++-+|......+...+.+++.+++++ .+.+|+++|++.+++. +.+|+++..+|.||.+ +++++|+
T Consensus 122 ~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~s~~~~~~i~ 195 (409)
T PLN02656 122 NILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGNVYSYQHLKKIA 195 (409)
T ss_pred eEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCCCCCHHHHHHHH
Confidence 377777777766666666788999999863 3579999999887543 2466666789999999 6789999
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|++|.+|+.+.
T Consensus 196 ~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 196 ETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHcCCEEEEehhhhhcc
Confidence 99999999999999996543
No 264
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.04 E-value=0.00056 Score=77.91 Aligned_cols=255 Identities=9% Similarity=0.044 Sum_probs=138.5
Q ss_pred HhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEe
Q psy852 454 GKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL 533 (891)
Q Consensus 454 ~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~V 533 (891)
+.+...+. +++ ++.|+++++..++.+.-. . ++ .|+++.-.+.....++...|.+++.+
T Consensus 77 ~~l~~~~~-~v~--~~~g~t~al~~~~~~~~~--------------~----gd-~vl~~~p~y~~~~~~~~~~g~~~~~v 134 (380)
T PRK06225 77 KDLGLDDD-EAL--ITAGATESLYLVMRAFLS--------------P----GD-NAVTPDPGYLIIDNFASRFGAEVIEV 134 (380)
T ss_pred HhcCCCCC-cEE--EeCCHHHHHHHHHHHhcC--------------C----CC-EEEEcCCCCcchHHHHHHhCceEEee
Confidence 33433333 566 788999998888765311 0 11 25555555666667777788899999
Q ss_pred cCCC---CCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----hcCC------------
Q psy852 534 EPDD---KNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----SQGI------------ 579 (891)
Q Consensus 534 p~d~---~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----ldGi------------ 579 (891)
|++. ++.+|+++|++++.+.+ ..++++. ..|.+. |.++ +|.+
T Consensus 135 ~~~~~~~~~~~d~~~l~~~~~~~~----~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 210 (380)
T PRK06225 135 PIYSEECNYKLTPELVKENMDENT----RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAA 210 (380)
T ss_pred ccccccCCccCCHHHHHhhcCCCc----eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchh
Confidence 9742 36899999999887532 1222232 245543 3221 1110
Q ss_pred --C-CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 580 --E-YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 580 --~-~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
. ...-...+++|+++.| .-+|+++.++. .+ +.+.. +.. ..++. +. .........|+..
T Consensus 211 ~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~-l~-~~~~~---~~~---------~~~~~--~~-~~~~~a~~~l~~~- 272 (380)
T PRK06225 211 EYAPEHTVTSYSFSKIFGMAGLRIGAVVATPD-LI-EVVKS---IVI---------NDLGT--NV-IAQEAAIAGLKVK- 272 (380)
T ss_pred hcCCCCEEEEeechhhcCCccceeEEEecCHH-HH-HHHHH---HHh---------cccCC--CH-HHHHHHHHHHhcc-
Confidence 1 1122344778999644 34799887543 22 22211 000 00111 11 1111111122211
Q ss_pred HhhH-HHHHHHHHHHHHHHHHHhccCCCcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc---
Q psy852 656 LSGL-QKYIRRHCELAKLFEGKVRRDPRFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--- 730 (891)
Q Consensus 656 ~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--- 730 (891)
..+ ++..+...++.+.+.+.|++++++.+. .++..+.+.+.+.+. +....++.+.|.+.|+.+..+...
T Consensus 273 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~l~~~l~~~gi~v~~g~~~~~~ 346 (380)
T PRK06225 273 -DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA-----GIDPEDLVEYLLERKIFVRQGTYTSKR 346 (380)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc-----cCCHHHHHHHHHHCCEEEcCCcccCcC
Confidence 122 222233345566777888877665442 344556777777542 123567888888889765443211
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+...+ +++.. ++++++++++.|+++.+
T Consensus 347 ~~~~~iR~s~~~--~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 347 FGDRYIRVSFSI--PREQVEVFCEEFPDVVE 375 (380)
T ss_pred CCCceEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 123355 87753 78999999999998874
No 265
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=98.02 E-value=0.00037 Score=79.63 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=113.5
Q ss_pred ccCCCCCCccccccCCCCCCHHHHHHHHHHHhcCCCCCc--cccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q psy852 10 HQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFS--WAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNAT 87 (891)
Q Consensus 10 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~--~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~ 87 (891)
+.+++|.+-.|+|.-..+....++...+-....+..+.. .-.++.-.+||+ .||+++|.+..-.
T Consensus 39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~al~---------- 104 (388)
T COG0156 39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEAALL---------- 104 (388)
T ss_pred ceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCcEEE----------
Confidence 346788888899886554433333333332223322222 233556677887 5667777775421
Q ss_pred CCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEE
Q psy852 88 TPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK 167 (891)
Q Consensus 88 tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~ 167 (891)
.++|..+|...+-.+.. ++.+|+.=+..|.|+..++++.+.+++
T Consensus 105 ---------------------f~SGy~AN~~~i~~l~~---------------~~dli~~D~lnHASiidG~rls~a~~~ 148 (388)
T COG0156 105 ---------------------FSSGFVANLGLLSALLK---------------KGDLIFSDELNHASIIDGIRLSRAEVR 148 (388)
T ss_pred ---------------------EcccchhHHHHHHHhcC---------------CCcEEEEechhhhhHHHHHHhCCCcEE
Confidence 13444333322222211 233466667899999999998877666
Q ss_pred EEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 168 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 168 ~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
.-+ .-|+++||+.|++..+++..+.+|+.-..=+..|.+=||.+|++++++|+.++-||=|+|
T Consensus 149 ~f~-----HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa 211 (388)
T COG0156 149 RFK-----HNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHA 211 (388)
T ss_pred Eec-----CCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEcccc
Confidence 654 268899999999865444356788888888899999999999999999999999999884
No 266
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.02 E-value=0.00043 Score=80.71 Aligned_cols=216 Identities=11% Similarity=0.117 Sum_probs=122.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+. .+ +.-.|+++...|.+...... -.|++++.++++ |+
T Consensus 84 ~~sSGt~Al~~al~~l----l~---------------~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~ 139 (433)
T PRK08134 84 ATASGQAALHLAIATL----MG---------------AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DI 139 (433)
T ss_pred EeCCHHHHHHHHHHHH----hC---------------CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CH
Confidence 5778899998887653 11 11248888888877655542 258888888875 89
Q ss_pred HHHHHHHHhhhhcCCccEEEEecCCcc----c--------hhhh-----hcCC-----------CCccEEEEcCcccCCc
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTLGTT----S--------CYRK-----SQGI-----------EYADSFNVNVNKWLLT 595 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~VvataGTT----~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~ 595 (891)
++|+++|++.++ ++++.+.|.. . |+++ +|+. -++|.+.+|+|||++.
T Consensus 140 ~~l~~~i~~~Tk-----lV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 140 DGWRAAIRPNTR-----LLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGG 214 (433)
T ss_pred HHHHHhcCCCCe-----EEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCC
Confidence 999999987532 2222233332 2 3332 3432 2589999999999987
Q ss_pred ccc-cEEEEEeCCccc-hh--hhc-cCCCccccC-C--CCCccccCC--------cccccccccchHHHHHHHHHHHhhH
Q psy852 596 AFD-SSCLWVADRYKL-TS--ALV-VDPLYLQHG-H--EGAIDYRHW--------GIPLSRRFRSLKLWFVIRTYGLSGL 659 (891)
Q Consensus 596 P~g-~G~llvR~~~~L-~~--~l~-~~~~Yl~~~-~--e~~~~~~~~--------ti~~SRr~~aL~lW~~L~~lG~~G~ 659 (891)
|-+ .|.+++...... .. .+. ..+.+.... - ........+ ....+-.......|..+ .|.+.+
T Consensus 215 ~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~--~gL~tl 292 (433)
T PRK08134 215 HGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLL--QGIETL 292 (433)
T ss_pred CCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHh--cCCCcH
Confidence 753 566666432211 00 000 000000000 0 000000000 00001112334555444 477889
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCC------C------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISND------V------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~------~------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
..++++..++|.++.+.|+++|.++-+.- | -.++++|.+++. .....++++.|.-
T Consensus 293 ~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~-----~~~~~~f~~~l~l 365 (433)
T PRK08134 293 PLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGG-----RAAGRKFIESLKL 365 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCC-----HHHHHHHHHhCCc
Confidence 99999999999999999999888753321 1 136999999642 1233455555543
No 267
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.02 E-value=0.00021 Score=81.82 Aligned_cols=245 Identities=10% Similarity=0.078 Sum_probs=141.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +++|+++++..++.+.-. +.-.|++.+-+|.+....+...|.+++.+|+|++ +.
T Consensus 95 ~i~--~t~G~~~al~~~~~~l~~-------------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 153 (391)
T PRK08361 95 NVI--VTAGAYEATYLAFESLLE-------------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQ 153 (391)
T ss_pred cEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCC
Confidence 555 678889998876654310 1124777777888888888888999999998764 57
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------CC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------GI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------Gi---------~~aD 583 (891)
+|+++|++.+++.++ .++++ +..|.+. |.++ +| +- ...+
T Consensus 154 ~d~~~l~~~i~~~~~----~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK08361 154 PDPDELLELITKRTR----MIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNT 229 (391)
T ss_pred CCHHHHHHhcccccE----EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCE
Confidence 999999999876321 22222 2345543 3221 11 10 1124
Q ss_pred EEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH----h
Q psy852 584 SFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL----S 657 (891)
Q Consensus 584 SIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~----~ 657 (891)
-+..+.+|.++.| | +|+++..+ +.+....... .+. .++. ..+.+..+...+.. .
T Consensus 230 i~~~s~SK~~~~~-GlRiG~~~~~~-~~~~~~~~~~-~~~-----------~~~~------~~~~q~~~~~~l~~~~~~~ 289 (391)
T PRK08361 230 ILANSFSKTFAMT-GWRLGFVIAPE-QVIKDMIKLH-AYI-----------IGNV------ASFVQIAGIEALRSKESWK 289 (391)
T ss_pred EEEecCchhcCCc-HhhhhhhccCH-HHHHHHHHHH-hhh-----------ccCC------ChHHHHHHHHHhcCCcccH
Confidence 4667889988766 5 78887743 2222211110 010 0001 11233333333321 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCe
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQND 734 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~ 734 (891)
.+++..+...+..+.+.+.|++.+++++..+.....++.++++. +....++.+.|. +.|+.+..+... .+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~-----~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~ 364 (391)
T PRK08361 290 AVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET-----GMSSEDFAEWLLEKARVVVIPGTAFGKAGEG 364 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCC-----CCCHHHHHHHHHHhCCEEEcCchhhCCCCCC
Confidence 35555666677788889999888787765543333455566432 113456777775 468875544332 2345
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ ++++. ++++++..++.|++.+
T Consensus 365 ~iRi~~~~--~~~~l~~al~~l~~~l 388 (391)
T PRK08361 365 YIRISYAT--SKEKLIEAMERMEKAL 388 (391)
T ss_pred EEEEEecC--CHHHHHHHHHHHHHHH
Confidence 66 88763 5677888887777654
No 268
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.01 E-value=0.00021 Score=81.25 Aligned_cols=258 Identities=14% Similarity=0.097 Sum_probs=150.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCCCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G~mD~~~L 546 (891)
.+++||.|+.++|.+..- .+.-.|+++...-.+...+....|.+++.+++| +++.||+++|
T Consensus 45 ~~~sgt~Al~~al~~l~~------------------~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~ 106 (363)
T PF01041_consen 45 AVSSGTSALHLALRALGL------------------GPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEAL 106 (363)
T ss_dssp EESSHHHHHHHHHHHTTG------------------GTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHH
T ss_pred EeCChhHHHHHHHHhcCC------------------CcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHH
Confidence 456788888888877321 123368999999999999999999999999998 7899999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcCC---CCccEEEEcCc--ccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQGI---EYADSFNVNVN--KWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldGi---~~aDSIs~d~H--K~L~~P~g 598 (891)
+++|.+.+ ..++++-..|... |.++ .+|- ...|.-.||.| |.+.+.-
T Consensus 107 ~~~i~~~t----~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge- 181 (363)
T PF01041_consen 107 EKAITPKT----KAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGE- 181 (363)
T ss_dssp HHHHHTTE----EEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS-
T ss_pred HHHhccCc----cEEEEecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCCC-
Confidence 99999864 2455666677765 4331 1221 23466666655 7773333
Q ss_pred cEEEEEeCCccchhhhccCCCccccCCCCCccccC-CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy852 599 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH-WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKV 677 (891)
Q Consensus 599 ~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~-~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L 677 (891)
-|++++++++.....-..............+.... .+. .++--.+=+++-..-.+.+.+.+++..++++++.+.|
T Consensus 182 GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~----n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L 257 (363)
T PF01041_consen 182 GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGY----NFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREAL 257 (363)
T ss_dssp -EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS------B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCc----ccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 37777777654333221111111100000000000 111 1221122233344456778899999999999999999
Q ss_pred ccCCCcEEeCCCc-e-----eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeec--c------ccC-----------
Q psy852 678 RRDPRFEISNDVR-L-----GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA--S------QEQ----------- 732 (891)
Q Consensus 678 ~~~~~~eil~~~~-~-----~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s--~------~~g----------- 732 (891)
..++++..+..+. . ....+++.+.. ......+.+.|.+.|+-..... . ...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~----~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ 333 (363)
T PF01041_consen 258 AGIPGIKPPPIPDGAERSSYYRFPIRLPDEA----LADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPN 333 (363)
T ss_dssp TTGTTEEEEGCGTTTEEBCESSEEEEETCCG----CSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHH
T ss_pred hcCCCcccccccccccccccccccccccccc----cchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHH
Confidence 9999987654322 1 23344554320 0235688999999998632211 0 001
Q ss_pred -----CeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 733 -----NDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 733 -----~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
...+ +-+++..+++|+++++++|+
T Consensus 334 ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 334 AERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 0145 55778899999999998875
No 269
>PLN02955 8-amino-7-oxononanoate synthase
Probab=98.01 E-value=0.0072 Score=70.91 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=68.8
Q ss_pred CeEEEecCCCChHHHHHHHHc----CCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMA----FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEI 217 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~----~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I 217 (891)
..+|+.=...|.|+.-++++. +.++...+ .-|+++|++.|+....+ ..+|++-..-+..|.+=|+.+|
T Consensus 200 ~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~-----HND~~~Le~~L~~~~~~---~~~Vv~EgV~SmdGdiapL~eL 271 (476)
T PLN02955 200 KVAIFSDALNHASIIDGVRLAERQGNVEVFVYR-----HCDMYHLNSLLSSCKMK---RKVVVTDSLFSMDGDFAPMEEL 271 (476)
T ss_pred CcEEEEeccchHHHHHHHHhccccCCceEEEeC-----CCCHHHHHHHHHhCCCC---ceEEEEeCCCCCCCCcCCHHHH
Confidence 445777788999999999775 34555444 34889999999775422 3466666667888999999999
Q ss_pred HHHHHHcCCceeeeccccCCc
Q psy852 218 GPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~~ 238 (891)
.++|++||..+.||=|+|++.
T Consensus 272 ~~L~~~~ga~LiVDEAH~~Gv 292 (476)
T PLN02955 272 SQLRKKYGFLLVIDDAHGTFV 292 (476)
T ss_pred HHHHHHcCcEEEEcccccCce
Confidence 999999999999999996543
No 270
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.00 E-value=0.00053 Score=77.11 Aligned_cols=170 Identities=17% Similarity=0.195 Sum_probs=110.6
Q ss_pred CHHHHHHHHHH-HhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q psy852 29 SYPSVLADMLS-DAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107 (891)
Q Consensus 29 ~~~~~~~~~l~-~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~ 107 (891)
.++.++..+.. .....-...|.......+++..+.+++.+--|++.+... . .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~------~---------------------i 71 (363)
T PF00155_consen 19 PPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEA------N---------------------I 71 (363)
T ss_dssp HHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGE------G---------------------E
T ss_pred chHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccce------E---------------------E
Confidence 44555555554 222222223334445678888888888866666543210 0 1
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQV 185 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~ 185 (891)
.+++|+.+....+..+.+.. +.-.|++..-.|......+...+..++.++.+ +++.+|+++|++.
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~-------------~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 138 (363)
T PF00155_consen 72 LVTSGAQAALFLLLRLLKIN-------------PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEA 138 (363)
T ss_dssp EEESHHHHHHHHHHHHHHSS-------------TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHH
T ss_pred EEecccccchhhhhhccccc-------------ccccceecCCccccccccccccCceeeeccccccccccccccccccc
Confidence 24566544333333333211 12247777888999999998888889998865 7889999999999
Q ss_pred HHhhhhcCCcceEEEeecccCccccccCHHHHHHH---HHHcCCceeeeccccCCc
Q psy852 186 MQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV---AKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 186 l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i---~~~~~~~lHvDaA~GG~~ 238 (891)
+++...++..+.+|+.+-.+|.||.+=+.+++.++ |+++++++-+|-+|+++.
T Consensus 139 l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 139 LDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp HHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred cccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccc
Confidence 99875554335577777888999988666555554 999999999999996544
No 271
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=98.00 E-value=8.2e-05 Score=83.80 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=70.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-++......+...|.+++.++.+.++.+|+++|++.+... +.+|+++..+|.+|.+-|++++.++|+++
T Consensus 114 vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 187 (361)
T PRK00950 114 VIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILEST 187 (361)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHC
Confidence 555554444445555667889999998888899999999988543 33666678899999999999999999999
Q ss_pred CCceeeeccccCC
Q psy852 225 DVWLHVDGAYAGS 237 (891)
Q Consensus 225 ~~~lHvDaA~GG~ 237 (891)
++++++|.+|+++
T Consensus 188 ~~~li~De~y~~~ 200 (361)
T PRK00950 188 DALVFVDEAYVEF 200 (361)
T ss_pred CcEEEEECchhhh
Confidence 9999999999653
No 272
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.00 E-value=0.0001 Score=85.78 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=68.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|+++.-..+.....+.+.+.+++.++++ .++.+|+++|++.+++.+ .+++++..+|.||.+-| +++|++
T Consensus 144 Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~P~NPtG~v~~~~~l~~i~~ 217 (430)
T PLN00145 144 ILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENT------VAMVIINPNNPCGSVYSYEHLAKIAE 217 (430)
T ss_pred EEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCc------eEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 6666556665556666677788888764 457899999998876543 46777778999999998 788889
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|++|++|.+|+.+
T Consensus 218 ~a~~~~i~ii~De~Y~~~ 235 (430)
T PLN00145 218 TARKLGILVIADEVYDHL 235 (430)
T ss_pred HHHHcCCEEEEeccchhh
Confidence 999999999999999653
No 273
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.00 E-value=0.00098 Score=76.08 Aligned_cols=250 Identities=9% Similarity=0.012 Sum_probs=143.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+++ +++|+++++..++.+.-. +.-.|+++.-.|.....++...|.+++.+|.++ .+.
T Consensus 93 ~i~--~~~g~~~a~~~~~~~~~~-------------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (393)
T PRK05764 93 QVI--VTTGAKQALYNAFMALLD-------------------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFK 151 (393)
T ss_pred HEE--EeCCcHHHHHHHHHHhcC-------------------CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCc
Confidence 455 678888888776655311 112477777888888888888899999999863 467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------CC------------C
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------GI------------E 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------Gi------------~ 580 (891)
+|+++|++++++.. ..++++ +..|.+. |.++ +| +- .
T Consensus 152 ~d~~~l~~~l~~~~----~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 227 (393)
T PRK05764 152 LTVEQLEAAITPKT----KALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELR 227 (393)
T ss_pred CCHHHHHHhhCccc----eEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCc
Confidence 99999999986432 122222 2245542 3221 11 10 0
Q ss_pred CccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--Hh
Q psy852 581 YADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LS 657 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~ 657 (891)
.-+-...+..|.++.|- -+|+++. +++.+.........+ .-....+.+|.+.+.+. .+
T Consensus 228 ~~~i~~~s~SK~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~------------------~~~~~~~~q~~~~~~l~~~~~ 288 (393)
T PRK05764 228 DRTITVNGFSKAYAMTGWRLGYAAG-PKELIKAMSKLQSHS------------------TSNPTSIAQYAAVAALNGPQD 288 (393)
T ss_pred CCEEEEecCcccccCccceeEEEec-CHHHHHHHHHHHhhc------------------ccCCChHHHHHHHHHHcCChH
Confidence 11233445788887662 2677663 332222111110000 00112345555555553 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~l 736 (891)
.+.+..+...++++++.+.|++++++.+..+.....+++++.+... .......++.+.|. +.|+.+..+........+
T Consensus 289 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~v 367 (393)
T PRK05764 289 EVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG-KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYV 367 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc-cccCCHHHHHHHHHHhCCEEEccccccCCCCEE
Confidence 4455556667788889999998878887654333355556643210 00012356777765 568876554433334456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++.. ++++++++++.|.+++
T Consensus 368 Ris~~~--~~~~~~~~i~~l~~~~ 389 (393)
T PRK05764 368 RLSYAT--SLEDLEEGLERIERFL 389 (393)
T ss_pred EEEecC--CHHHHHHHHHHHHHHH
Confidence 88764 6899999999998775
No 274
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.00 E-value=0.00036 Score=81.18 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=63.9
Q ss_pred EEEecCCCChHHHHH----HHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~ka----a~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++.....+.... +...|.++..++. .+|+++++++|++.++ +|.+...+|.++.+-|+++|++
T Consensus 102 ~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~----~~d~~~l~~~I~~~Tk------~I~~e~pgnP~~~v~Di~~I~~ 171 (432)
T PRK06702 102 HLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP----NLTADEIVALANDKTK------LVYAESLGNPAMNVLNFKEFSD 171 (432)
T ss_pred EEEECCCchHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHhCCcCCe------EEEEEcCCCccccccCHHHHHH
Confidence 378887777655444 3345678888753 4799999999987542 5555667899999999999999
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++|+++-+|.+|+
T Consensus 172 iA~~~gi~livD~T~~ 187 (432)
T PRK06702 172 AAKELEVPFIVDNTLA 187 (432)
T ss_pred HHHHcCCEEEEECCCC
Confidence 9999999999999994
No 275
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=97.98 E-value=0.0011 Score=76.15 Aligned_cols=146 Identities=10% Similarity=-0.011 Sum_probs=88.9
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-+++ .|+++..+++|+++.+++ +.+.+.. . . ...+.. +-+........+|+.+..+ +
T Consensus 245 pDi~t~--sK~l~~G~~ig~~~~~~~--~~~~~~~--~--~---------~~~t~~-~~~~~~aaa~a~l~~~~~~---~ 303 (398)
T PRK03244 245 PDVVTL--AKGLGGGLPIGACLAFGP--AADLLTP--G--L---------HGSTFG-GNPVACAAALAVLDTIASE---G 303 (398)
T ss_pred CCEEEE--chhhhCCcccEEEEEcHH--HHhhccC--C--C---------CcCCCC-CCHHHHHHHHHHHHHHHhc---c
Confidence 466666 699997788999998765 2222210 0 0 011111 1122223333444444433 3
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FE 738 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~s 738 (891)
..++..++.++|.+.|++.. +.++.. ...+++.+.+.+ .....+.++|.++|++.. +. +...+ ++
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~-~~~~~~v~g~g~~~~i~~~~-------~~~~~~~~~l~~~Gv~~~-~~---~~~~iR~~ 371 (398)
T PRK03244 304 LLENAERLGEQLRAGIEALG-HPLVDHVRGRGLLLGIVLTA-------PVAKAVEAAAREAGFLVN-AV---APDVIRLA 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCceeeEeeccEEEEEEEec-------cHHHHHHHHHHHCCeEEe-ec---CCCEEEEE
Confidence 45666777888999998752 222211 134566777642 145678899999998743 21 23567 99
Q ss_pred ecCCCCHHHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei~~ 760 (891)
++...|++||+++++.|++++.
T Consensus 372 p~~~~t~~~i~~~~~~l~~~l~ 393 (398)
T PRK03244 372 PPLIITDAQVDAFVAALPAILD 393 (398)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH
Confidence 9888899999999999998874
No 276
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=97.98 E-value=0.00014 Score=83.16 Aligned_cols=83 Identities=6% Similarity=0.061 Sum_probs=69.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAK 222 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~ 222 (891)
.|+++..+|.+...++...|.+++.|++|++ +.+|+++|++.+++.+ -+|+. ++.+|..-|+.+|.++|+
T Consensus 73 ~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~t------k~Iip---~~~~G~~~d~~~I~~la~ 143 (376)
T TIGR02379 73 EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRT------KAIVP---VHYAGVACDMDTIMALAN 143 (376)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCc------eEEEE---eCCCCCccCHHHHHHHHH
Confidence 4888889999998888777889999999976 5799999999887542 34543 456799999999999999
Q ss_pred HcCCceeeecccc
Q psy852 223 EFDVWLHVDGAYA 235 (891)
Q Consensus 223 ~~~~~lHvDaA~G 235 (891)
++|++|..|+|++
T Consensus 144 ~~~i~vIeDaa~~ 156 (376)
T TIGR02379 144 KHQLFVIEDAAQG 156 (376)
T ss_pred HCCCEEEEECccc
Confidence 9999999999983
No 277
>PLN02724 Molybdenum cofactor sulfurase
Probab=97.98 E-value=1.2e-05 Score=100.42 Aligned_cols=292 Identities=12% Similarity=0.004 Sum_probs=183.5
Q ss_pred HHHHHHHHH-HHHHhhccCC-ccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH
Q psy852 442 IRRHCELAK-LFEGKVRRDP-RFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV 519 (891)
Q Consensus 442 i~~~lelAr-~l~~~L~~~~-~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv 519 (891)
....++.+| .+++.|+..+ .++|+ +|+|+|+++........ + .+.-.|+++...|.|+
T Consensus 76 ~~~~~e~aR~~ia~~lga~~~~~~Vv--FtsnaT~alnlva~~l~--~----------------~~gd~Iv~t~~eH~sv 135 (805)
T PLN02724 76 SSDTIESARQQVLEYFNAPPSDYACV--FTSGATAALKLVGETFP--W----------------SSESHFCYTLENHNSV 135 (805)
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEE--EeCChHHHHHHHHHHCC--C----------------CCCCeEEEeeccccch
Confidence 444566665 7777777654 45677 88999999876643321 0 0112577799999988
Q ss_pred HHHHHH---cCceEEEecCC--------CCCCcCH--HHHHHHHHh----h----hhcCCc-cEEEEecCCccc------
Q psy852 520 EKAAMM---AFVRLKILEPD--------DKNSLRG--ATLRQVMQQ----D----ETMGYI-PFFVSTTLGTTS------ 571 (891)
Q Consensus 520 ~Kaa~l---~gv~v~~Vp~d--------~~G~mD~--~~Le~aI~~----d----~~~g~i-p~~VvataGTT~------ 571 (891)
.-...+ .|++++.+|++ ++|.+++ ++|++.+.+ . ....++ ..++.+..|+..
T Consensus 136 l~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~ 215 (805)
T PLN02724 136 LGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVK 215 (805)
T ss_pred HHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHH
Confidence 744333 47889999886 5566655 667776531 0 000122 223345566655
Q ss_pred -hhh--------------hhcCC------------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccC
Q psy852 572 -CYR--------------KSQGI------------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG 624 (891)
Q Consensus 572 -c~~--------------~ldGi------------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~ 624 (891)
|.+ ++|+. -.+|.+++++|||+++|.|+|+||+|++. +. .+ .+.|...+
T Consensus 216 ~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~-~~-~l--~p~~~GGg 291 (805)
T PLN02724 216 LIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDA-AK-LL--KKKYFGGG 291 (805)
T ss_pred HHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEEehhh-hh-hh--cCCccCCC
Confidence 121 13432 24799999999999999999999999752 11 11 22222221
Q ss_pred CC------CCc----cccCCcccc-cccc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC------CcEEe
Q psy852 625 HE------GAI----DYRHWGIPL-SRRF-RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP------RFEIS 686 (891)
Q Consensus 625 ~e------~~~----~~~~~ti~~-SRr~-~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~------~~eil 686 (891)
.- ..+ ......++. +..+ ..+.+-.+++.+-..|++++.++...|+++|.+.|++++ +++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iy 371 (805)
T PLN02724 292 TVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLY 371 (805)
T ss_pred ceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEc
Confidence 10 000 000011221 2222 235677788888888999999999999999999999886 58888
Q ss_pred CCC--------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc---------------------------
Q psy852 687 NDV--------RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--------------------------- 731 (891)
Q Consensus 687 ~~~--------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--------------------------- 731 (891)
++. ..++|+|.+.+.....+. ...+...+...|+...+++.+.
T Consensus 372 g~~~~~~~~~~r~~ivsFnv~~~~~~~v~--~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~ 449 (805)
T PLN02724 372 GNHTFKLEFHIQGPIVTFNLKRADGSWVG--HREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWD 449 (805)
T ss_pred CCCCCCCCcccccCEEEEEEEcCCCCEeC--HHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCc
Confidence 643 468999999875322211 1122333355788877766543
Q ss_pred ------C--CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 ------Q--NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 ------g--~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ .+++ +|+++++|.+|||+++++|++.-
T Consensus 450 ~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 450 DQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred hhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 1 2567 99999999999999999999853
No 278
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=97.97 E-value=0.00043 Score=79.32 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=133.1
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEec--ccchHHHHHHHHH-------cCceEEEecCC-CCC
Q psy852 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCS--KEAHSCVEKAAMM-------AFVRLKILEPD-DKN 539 (891)
Q Consensus 470 sggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S--~~aH~Sv~Kaa~l-------~gv~v~~Vp~d-~~G 539 (891)
.+|+.||+.++.+.-+ ++..++-.+ .-.|.|....... ...+....++| +++
T Consensus 93 ~SGs~An~av~~aLl~------------------pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~ 154 (399)
T PF00464_consen 93 HSGSQANLAVYMALLK------------------PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTG 154 (399)
T ss_dssp SSHHHHHHHHHHHHT-------------------TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTS
T ss_pred CCchHHHHHHHHHHHh------------------hcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCC
Confidence 5678899887776321 112223222 3346554333322 23477888888 679
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC----------CCCccEEEEc
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG----------IEYADSFNVN 588 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG----------i~~aDSIs~d 588 (891)
.+|.+.+++.+++. .|-+|+...-... |.+ |+.| +++||-++.+
T Consensus 155 ~ID~d~l~~~a~~~-----kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~s 229 (399)
T PF00464_consen 155 LIDYDELEKLAKEH-----KPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGS 229 (399)
T ss_dssp SB-HHHHHHHHHHH-------SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEE
T ss_pred eECHHHHHHHHhhc-----CCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEee
Confidence 99999999999874 2444443332222 222 2222 5889999999
Q ss_pred CcccCCcccccEEEEEeCCc------------cchhhhccCCCccccCCCCCccccCCcccccccc-cchHHHHHHHHHH
Q psy852 589 VNKWLLTAFDSSCLWVADRY------------KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF-RSLKLWFVIRTYG 655 (891)
Q Consensus 589 ~HK~L~~P~g~G~llvR~~~------------~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~-~aL~lW~~L~~lG 655 (891)
-||.|-+|-| |++++++.. .+.+.+.. -+ -.+.+++=.. +...+..+++...
T Consensus 230 ThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~---av-----------fP~~qg~~h~~~iaalAval~ea~ 294 (399)
T PF00464_consen 230 THKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDS---AV-----------FPGLQGGPHMHRIAALAVALKEAL 294 (399)
T ss_dssp SSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHH---HH-----------TTTT-SS--HHHHHHHHHHHHHHT
T ss_pred ccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhcc---cc-----------CCCcccCcchhHHHHHHHHHhccc
Confidence 9999999986 788887221 11111100 00 0011111111 1234455666666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-c-cC
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-Q-EQ 732 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~-~g 732 (891)
...+++..++.+++|+.|++.|.+ .+|.++. -.+.++|.....+. +.......+.|.+-|+.+-.-+- . ..
T Consensus 295 ~~~fk~Ya~qVv~NAk~La~~L~~-~G~~v~~ggTd~H~vlvd~~~~-----~~~g~~a~~~Le~~gI~vnkn~iP~d~~ 368 (399)
T PF00464_consen 295 SPEFKEYAKQVVKNAKALAEALQE-RGFKVVTGGTDNHQVLVDLRSF-----GIDGKEAEKALEEAGIIVNKNTIPGDRS 368 (399)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-TT-EEGGGS-SSSEEEEEGGGG-----TS-HHHHHHHHHHTTEE-EEE--TTTST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEECCCCCCeEEEEeccc-----ccchHHHHHHHHhcCeeecccccCCCCC
Confidence 667889999999999999999998 4899974 35678888887643 22345666778888987422111 1 11
Q ss_pred ---CeEE-EE----ecCCCCHHHHHHHHHHH
Q psy852 733 ---NDEV-FE----LQERKRKDDLAYKRSFF 755 (891)
Q Consensus 733 ---~~~l-~s----v~~~tT~edId~li~~L 755 (891)
...+ +. +.....++|+.++.+.|
T Consensus 369 ~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 369 PFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp TTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 1234 55 34567888888776543
No 279
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=97.97 E-value=0.00014 Score=83.76 Aligned_cols=88 Identities=11% Similarity=0.164 Sum_probs=69.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|+++.-++......+...+.+++.++++ +++.+|++++++.+.+. +.+|+++..+|.+|.+- ++++|++
T Consensus 123 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~ 196 (403)
T TIGR01265 123 ILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK------TVAIVVINPSNPCGSVFSRDHLQKIAE 196 (403)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC------ccEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 6666667777777776677788888875 35689999999887653 24677778899999995 4899999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|+++++|.+|+.+.
T Consensus 197 ~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 197 VARKLGIPIIADEIYGHMV 215 (403)
T ss_pred HHHHCCCEEEEEccccccc
Confidence 9999999999999996543
No 280
>PRK08960 hypothetical protein; Provisional
Probab=97.96 E-value=0.00012 Score=83.53 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=70.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
.|+++.-+|.+....+...+.+++.|+++++ +.+|+++|++.+++.. .+++.+..+|.||.+-+.+ +|+
T Consensus 118 ~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~ 191 (387)
T PRK08960 118 HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADT------VGALVASPANPTGTLLSRDELAALS 191 (387)
T ss_pred EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccc------eEEEEECCCCCCCcCcCHHHHHHHH
Confidence 4778888998888888776778999998765 4799999999876542 3566677899999997754 666
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++|+++.+|.+|..+
T Consensus 192 ~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 192 QALRARGGHLVVDEIYHGL 210 (387)
T ss_pred HHHHHcCCEEEEEcccccc
Confidence 6789999999999999553
No 281
>PRK07505 hypothetical protein; Provisional
Probab=97.96 E-value=0.00091 Score=76.93 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=62.2
Q ss_pred EEEecCCCChHHHHHH--HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA--MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa--~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~ 221 (891)
+|+.....|.|+.... ...+.+++.+|.+ |+++|++.+++. +.+++++-+++.+|.+.|+++|.++|
T Consensus 137 vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~l~ 205 (402)
T PRK07505 137 HMVFDKNAHASLNILKGICADETEVETIDHN-----DLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLRLQ 205 (402)
T ss_pred EEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHHHH
Confidence 5666778999985422 2234577777753 889999888643 23666677888999999999999999
Q ss_pred HHcCCceeeeccc
Q psy852 222 KEFDVWLHVDGAY 234 (891)
Q Consensus 222 ~~~~~~lHvDaA~ 234 (891)
+++++++++|.++
T Consensus 206 ~~~~~~li~DEa~ 218 (402)
T PRK07505 206 EKYGLFLYIDDAH 218 (402)
T ss_pred HHcCCEEEEECcc
Confidence 9999999999998
No 282
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=97.96 E-value=3.5e-05 Score=86.57 Aligned_cols=276 Identities=10% Similarity=0.004 Sum_probs=173.5
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH--HHHHHHHc
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC--VEKAAMMA 526 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S--v~Kaa~l~ 526 (891)
.+.+++.+...+.-.++ +++++++++..++.+.- . +.-.|+++...|++ +...+...
T Consensus 38 ~~~la~~~g~~~~~~~~--~~~~~t~al~~~~~~~~----~---------------~g~~vl~~~~~~~~~~~~~~~~~~ 96 (356)
T cd06451 38 LEGLRYVFQTENGLTFL--LSGSGTGAMEAALSNLL----E---------------PGDKVLVGVNGVFGDRWADMAERY 96 (356)
T ss_pred HHHHHHHhcCCCCCEEE--EecCcHHHHHHHHHHhC----C---------------CCCEEEEecCCchhHHHHHHHHHh
Confidence 34555555543333344 56677999877775431 1 11236666677876 34556678
Q ss_pred CceEEEecCCCCCCcCHHHHHHHHHh-hhhcCCccEEEE---ecCCccc--------hhhh-----hcCC----------
Q psy852 527 FVRLKILEPDDKNSLRGATLRQVMQQ-DETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI---------- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~G~mD~~~Le~aI~~-d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi---------- 579 (891)
|.+++.+|+++++.+|+++|++.+++ +. ..++++ +..|+.. |+++ +|+.
T Consensus 97 g~~~~~v~~~~~~~~~~~~l~~~i~~~~~----~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~ 172 (356)
T cd06451 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI----KAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRM 172 (356)
T ss_pred CCCeEEeecCCCCCCCHHHHHHHHhccCC----CEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccc
Confidence 89999999988899999999999975 22 122222 2245543 3331 2221
Q ss_pred --CCccEEEEcCcccCCcccccEEEEEeCCccchhhhc--cCC-CccccCCCCCccccCCc-cc-ccccc-cchHHHHHH
Q psy852 580 --EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV--VDP-LYLQHGHEGAIDYRHWG-IP-LSRRF-RSLKLWFVI 651 (891)
Q Consensus 580 --~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~--~~~-~Yl~~~~e~~~~~~~~t-i~-~SRr~-~aL~lW~~L 651 (891)
..+|.+..++|||+++|.|+|+++++++ .+..... ... .|...... ......+ .. ++-.. ....++.++
T Consensus 173 ~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~t~~~~~~~a~~aal 249 (356)
T cd06451 173 DEWGVDVAYTGSQKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDLLLL--LKYWGEGYSYPHTPPVNLLYALREAL 249 (356)
T ss_pred cccCccEEEecCchhccCCCCcceeEECHH-HHHHHHhcCCCCceeecHHHH--HhhhcccCCCCCCChHHHHHHHHHHH
Confidence 2479999999999999999999999865 2222211 111 11110000 0000000 00 01111 124667888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc--eeEE-EEEecCCcchhhhhhHHHHHHHHHhC-CcEEEee
Q psy852 652 RTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR--LGLV-CFRLRSENNLIADQNNRKLLEDINAS-GRLHMVP 727 (891)
Q Consensus 652 ~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~--~~iV-~Fr~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~ 727 (891)
+.+...++++..++..++++++.+.|++. ++++..++. .+.+ ++++.+. .....+.+.|.+. |+....+
T Consensus 250 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~~gI~~~~g 322 (356)
T cd06451 250 DLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEG------VDGDEVVRRLMKRYNIEIAGG 322 (356)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCC------CCHHHHHHHHHHhCCEEEecc
Confidence 88888899999999999999999999987 788875432 4444 4555321 2356788899888 8875544
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
........+ ++++.++|++||++++++|++++
T Consensus 323 ~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 323 LGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 333333466 99999999999999999998764
No 283
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=97.96 E-value=0.00067 Score=76.49 Aligned_cols=247 Identities=9% Similarity=0.036 Sum_probs=137.7
Q ss_pred HHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEE
Q psy852 452 FEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK 531 (891)
Q Consensus 452 l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~ 531 (891)
+++.+...++-+|+ +++|+++++..++.+.- + +...|++..-.+.....++...|++++
T Consensus 72 ia~~~~~~~~~~I~--~t~G~~~~i~~~~~~~~----~---------------~gd~vlv~~P~y~~~~~~~~~~g~~~~ 130 (356)
T PRK04870 72 LRAAMGVPAGADVL--LGNGSDELIQLLALACA----K---------------PGATVLAPEPGFVMYRMSAKLAGLEFV 130 (356)
T ss_pred HHHHhCcCCCCcEE--EcCCHHHHHHHHHHHhc----C---------------CCCEEEECCCCHHHHHHHHHHcCCEEE
Confidence 33444332322455 67787777766554321 0 122466777778888888889999999
Q ss_pred EecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCCCCcc------------
Q psy852 532 ILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGIEYAD------------ 583 (891)
Q Consensus 532 ~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi~~aD------------ 583 (891)
.+|.++++.+|+++|++++.... ...++++ +-.|++. +... +|.+ +.|
T Consensus 131 ~i~~~~~~~~d~~~l~~~~~~~~---~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~-y~~~~~~~~~~~~~~ 206 (356)
T PRK04870 131 GVPLTADFTLDLPAMLAAIAEHR---PALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEA-YQPFAGDSWLPRLAR 206 (356)
T ss_pred EecCCCCCCCCHHHHHHHhhcCC---CCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC-chhhcCcchHHHHhh
Confidence 99999889999999999986521 1223333 3345554 1100 1110 001
Q ss_pred ----EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hh
Q psy852 584 ----SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LS 657 (891)
Q Consensus 584 ----SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~ 657 (891)
-+.-+..|+ +.| .-+|+++... +.+........ .+. ...+.++++...+. .+
T Consensus 207 ~~~vi~~~S~SK~-~~~GlRiG~~i~~~-~~i~~~~~~~~--------------~~~------~~~~~q~~a~~~l~~~~ 264 (356)
T PRK04870 207 FPNLLVMRTVSKL-GLAGLRLGYLAGHP-AWIAELDKVRP--------------PYN------VNVLTQATALFALEHVD 264 (356)
T ss_pred CCCEEEEecchhh-hhHHHhhhhhhCCH-HHHHHHHHccC--------------CCc------CCHHHHHHHHHHHhCHH
Confidence 112233442 211 1133333211 11111000000 011 11222333222221 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~ 735 (891)
.+++..++..+.++++.+.|++.+++.+. ++..+.+.+++. ....+.+.|.++|+.+..+.... ....
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~ 334 (356)
T PRK04870 265 VLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP---------DAAAVFDGLKTRGVLVKNLSGMHPLLANC 334 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC---------CHHHHHHHHHHCCEEEEECCCCCCCCCCe
Confidence 36777778888999999999988888764 556667777764 13567888888998865443321 2345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei 758 (891)
+ ++++ +.+++++++++|+++
T Consensus 335 iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 335 LRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred EEEeCC---CHHHHHHHHHHHHHh
Confidence 6 8776 789999999999864
No 284
>PRK07582 cystathionine gamma-lyase; Validated
Probab=97.94 E-value=0.00071 Score=77.11 Aligned_cols=148 Identities=19% Similarity=0.079 Sum_probs=89.7
Q ss_pred CccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
.+|-+..++|||+++|-| .|+++.++++... .+..-..+. +. ....+..|..++ |..-
T Consensus 183 g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~-~l~~~~~~~-------------g~----~~~~~~a~l~~r--~l~t 242 (366)
T PRK07582 183 GADLVVASDTKALTGHSDLLLGYVAGRDPELMA-AVERWRLLA-------------GA----IPGPFEAWLAHR--SLGT 242 (366)
T ss_pred CCcEEEecccccccCCCCeeEEEEEcCcHHHHH-HHHHHHHHh-------------CC----CCCHHHHHHHHh--cccc
Confidence 479999999999999877 4777766554322 221100010 00 012344565554 4456
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeC------CC-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISN------DV-----------RLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~------~~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+..++++..++++.+++.|+++|.++-+. .| ..++|+|.+.+ .+.+.+.|+..+
T Consensus 243 l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~---------~~~~~~~~~~l~ 313 (366)
T PRK07582 243 LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD---------AAAAERFVAASR 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC---------HHHHHHHHHhCC
Confidence 77888999999999999999999876432 23 25799999952 122333333333
Q ss_pred cEEEeec------------cc---cCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 722 RLHMVPA------------SQ---EQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 722 ~~~~s~s------------~~---~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
++....+ .. -....+ +|++....++.|+.+.++|++
T Consensus 314 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 314 LVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred cceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 3322100 01 112456 999988777777777777653
No 285
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=97.94 E-value=0.0021 Score=72.16 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=137.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+.-. +.-.|+++.-.+......+...|++++.+|.++++.+|
T Consensus 79 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d 137 (353)
T PRK05387 79 QVF--VGNGSDEVLAHAFLAFFN-------------------HDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSID 137 (353)
T ss_pred HEE--EcCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCC
Confidence 566 788999988877665311 11236666666666666677889999999998889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh------hc-------CC--------CCccEEEEcCc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK------SQ-------GI--------EYADSFNVNVN 590 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~------ld-------Gi--------~~aDSIs~d~H 590 (891)
+++|++. . . -++++ +-.|.+. |... +| +- ..-.-+..++.
T Consensus 138 ~~~l~~~----~---~-~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~S 209 (353)
T PRK05387 138 VEDYLRP----N---G-GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFS 209 (353)
T ss_pred HHHHHhc----C---C-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehh
Confidence 9998641 1 1 12222 2345554 1110 11 10 00124555677
Q ss_pred ccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-HhhHHHHHHHHHH
Q psy852 591 KWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGLQKYIRRHCE 668 (891)
Q Consensus 591 K~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~~~~i~~~~~ 668 (891)
|.++.| .-+|+++. +++.+ +.+....... ..++ ...+.++++...+. .+.+++..++..+
T Consensus 210 K~~~~~GlR~G~~~~-~~~~~-~~l~~~~~~~----------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 271 (353)
T PRK05387 210 KSRSLAGLRVGFAIG-HPELI-EALNRVKNSF----------NSYP------LDRLAQAGAIAAIEDEAYFEETRAKVIA 271 (353)
T ss_pred Hhhcchhhhceeeec-CHHHH-HHHHHhhccC----------CCCC------cCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776645 44666654 22222 1111100000 0011 11234444444443 2345666777788
Q ss_pred HHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHH
Q psy852 669 LAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDD 747 (891)
Q Consensus 669 lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ed 747 (891)
.++++.+.|++. ++++. ++..+.+++++.+. ...++.+.|.++|+.+...........+ ++++ +.++
T Consensus 272 ~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~ 339 (353)
T PRK05387 272 TRERLVEELEAL-GFEVL-PSKANFVFARHPSH-------DAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEE 339 (353)
T ss_pred HHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC-------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHH
Confidence 889999999887 67654 44566777776432 3567888898899875322111223456 8776 6799
Q ss_pred HHHHHHHHHHHH
Q psy852 748 LAYKRSFFVRML 759 (891)
Q Consensus 748 Id~li~~L~ei~ 759 (891)
+++++++|+++.
T Consensus 340 ~~~~~~~L~~~~ 351 (353)
T PRK05387 340 MEALVDALKEIL 351 (353)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 286
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=97.93 E-value=0.00013 Score=82.47 Aligned_cols=247 Identities=11% Similarity=0.084 Sum_probs=139.1
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++...-.++ +|+ ++.|++|++..++.+. ... ++-.|+++.-++......++..|.++
T Consensus 65 ~~a~~~g~~~~-~I~--~~~Gs~e~i~~~~~~~----~~~--------------g~~~vli~~P~y~~y~~~~~~~G~~~ 123 (351)
T PRK01688 65 NYAAYAGVKPE-QVL--VSRGADEGIELLIRAF----CEP--------------GKDAILYCPPTYGMYSVSAETIGVEI 123 (351)
T ss_pred HHHHHhCCCHH-HEE--EcCCHHHHHHHHHHHh----cCC--------------CCCEEEEcCCCHHHHHHHHHHcCCEE
Confidence 33344333333 566 6789999887766542 100 11246777778888888888899999
Q ss_pred EEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh----hhcCC--CCc------c-
Q psy852 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR----KSQGI--EYA------D- 583 (891)
Q Consensus 531 ~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~----~ldGi--~~a------D- 583 (891)
+.+|.++++.+|+++|+++++ . ...++++ +-.|+.. |.+ .+|.. +.+ +
T Consensus 124 ~~v~~~~~~~~d~~~l~~~~~-~----~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~ 198 (351)
T PRK01688 124 RTVPTLDNWQLDLPAIADNLD-G----VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGW 198 (351)
T ss_pred EEeecCCCCCCCHHHHHHhcc-C----CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHH
Confidence 999998889999999998873 2 1123333 3356654 111 01111 000 0
Q ss_pred -------EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH-
Q psy852 584 -------SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY- 654 (891)
Q Consensus 584 -------SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l- 654 (891)
-+.-+++|+++.| .-+|.++...+ .+......... +.+ + .+.+-++...+
T Consensus 199 ~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~-~i~~l~~~~~~--------------~~v--~----~~~~~~a~~~L~ 257 (351)
T PRK01688 199 LAEYPHLVILRTLSKAFALAGLRCGFTLANEE-VINLLLKVIAP--------------YPL--S----TPVADIAAQALS 257 (351)
T ss_pred HhhCCCEEEEecchHhhcCHHHHHhHHhCCHH-HHHHHHhccCC--------------CCC--C----HHHHHHHHHHHh
Confidence 0112233544422 23444443211 11110000000 111 1 11111222222
Q ss_pred --HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-c
Q psy852 655 --GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-E 731 (891)
Q Consensus 655 --G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~ 731 (891)
+.+-+++.++...+.++++.+.|+++++++.+.++..+-+.+++. ..+.+.+.|.++|+.+...... .
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~---------~~~~l~~~L~~~gi~vr~~~~~~~ 328 (351)
T PRK01688 258 PQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT---------ASSAVFKSLWDQGIILRDQNKQPG 328 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC---------CHHHHHHHHHHCCeEEEECCCcCC
Confidence 234456667777788899999999888876555666777777764 2367888899999876544322 1
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
....+ ++++ +.+|+++++++|+
T Consensus 329 ~~~~iRis~~---~~~e~~~l~~al~ 351 (351)
T PRK01688 329 LSNCLRITIG---TREECQRVIDALR 351 (351)
T ss_pred CCCeEEEeCC---CHHHHHHHHHhhC
Confidence 13456 8887 6799999998873
No 287
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=97.93 E-value=0.0015 Score=75.45 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=51.8
Q ss_pred EEEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|++|...|+.....+. ..+.+++.++++++|..| .++ ++.|+++.-| ..|.|+++.+|++
T Consensus 156 ~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~------~a~v~vq~Pn-~~G~~ed~~~i~~ 220 (429)
T PF02347_consen 156 KVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDD------TAAVMVQNPN-TFGVFEDIKEIAD 220 (429)
T ss_dssp EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STT------EEEEEEESS--TTSB--THHHHHH
T ss_pred EEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccC------eEEEEeecCC-CCceEeeHHHHHH
Confidence 48999999998877653 257799999999999988 222 5788888886 5799999999999
Q ss_pred HHHHcCCceee
Q psy852 220 VAKEFDVWLHV 230 (891)
Q Consensus 220 i~~~~~~~lHv 230 (891)
+++++|..+-+
T Consensus 221 ~~h~~gal~~~ 231 (429)
T PF02347_consen 221 IAHAAGALVIV 231 (429)
T ss_dssp HHHHTT-EEEE
T ss_pred HHHHcCCEEEE
Confidence 99999855433
No 288
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.92 E-value=0.0004 Score=79.14 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=116.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++.+... +.-.|+++...|.+.... +...|++++.++.+ |+
T Consensus 60 ~~~sG~~Ai~~~l~~l~~-------------------~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~ 115 (369)
T cd00614 60 AFSSGMAAISTVLLALLK-------------------AGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DP 115 (369)
T ss_pred EEcCHHHHHHHHHHHHcC-------------------CCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CH
Confidence 456778888888766411 112467777777665443 34567888888775 58
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
++|++++++.+ ..+++.. ..|... |+++ +|+ + -.+|.+..+.+|++++|
T Consensus 116 ~~l~~~i~~~~----~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~ 191 (369)
T cd00614 116 EALEAAIKPET----KLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGH 191 (369)
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCC
Confidence 88888886521 1222211 123222 3331 222 1 25899999999999987
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++++... .+.....+ ++ -....+..|..++ +.+.+..++++..++++++.
T Consensus 192 ~~~~gG~v~~~~~~l~~-~l~~~~~~-------------~g----~~~~p~~a~~~l~--~l~tl~~r~~~~~~na~~la 251 (369)
T cd00614 192 SDVIAGVVVGSGEALIQ-RLRFLRLA-------------LG----TILSPFDAWLLLR--GLKTLPLRMERHSENALKVA 251 (369)
T ss_pred CCceEEEEEeCcHHHHH-HHHHHHHh-------------hC----CCCCHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 53 6777765533222 11110000 00 0122445566655 44667788999999999999
Q ss_pred HHhccCCCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 675 GKVRRDPRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 675 ~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+.|++.+.++-+.-| ..++++|.+.+. .....++.+.|.
T Consensus 252 ~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~-----~~~~~~f~~~l~ 307 (369)
T cd00614 252 EFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGG-----LEAAKKFLNALK 307 (369)
T ss_pred HHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCC-----HHHHHHHHHcCC
Confidence 999998876543222 357999999742 233445555554
No 289
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=0.0011 Score=75.45 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~mD~~~L 546 (891)
.+++||.++.++|.+.- + .+.-.|+++...=.+-..+..+.|.+.+.|.+|++ +-||++.|
T Consensus 54 a~~sgT~AL~laL~al~---i---------------g~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~i 115 (374)
T COG0399 54 AVSSGTAALHLALLALA---I---------------GPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLI 115 (374)
T ss_pred EecChHHHHHHHHHhcC---C---------------CCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHH
Confidence 35678888888887532 1 12225888888888887777889999999999965 89999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh--------------------hcCCCCccEEEEcCcccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK--------------------SQGIEYADSFNVNVNKWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~--------------------ldGi~~aDSIs~d~HK~L~~P~g 598 (891)
|++|.+.++ -++.+-.+|-.. |.+| +-....+-++||-++|-+.+= .
T Consensus 116 e~aIt~~tK----AIipVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg-E 190 (374)
T COG0399 116 EAAITPRTK----AIIPVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTG-E 190 (374)
T ss_pred HHHcccCCe----EEEEehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCcccc-C
Confidence 999998632 445555566654 3321 112455788899999977654 4
Q ss_pred cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy852 599 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 678 (891)
Q Consensus 599 ~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~ 678 (891)
=|+++..|++.....-......+..+....+..-..+... |..- +=+++.....+.+.+..++..+++++..+.|+
T Consensus 191 GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~--rm~~--iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~ 266 (374)
T COG0399 191 GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNY--RLTE--IQAAIGLAQLERLDEINERRREIAQIYAEALK 266 (374)
T ss_pred ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeeccccc--CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777765443322111111111000001111111111 1111 11334445567788888899999999999999
Q ss_pred cCCCcEEeCCCceeEEEEEecCCc-chhhhhhHHHHHHHHHhCCcE---EEeecc----cc----------------CCe
Q psy852 679 RDPRFEISNDVRLGLVCFRLRSEN-NLIADQNNRKLLEDINASGRL---HMVPAS----QE----------------QND 734 (891)
Q Consensus 679 ~~~~~eil~~~~~~iV~Fr~~~~~-~~~~d~ln~~L~~~L~~~G~~---~~s~s~----~~----------------g~~ 734 (891)
+.+++.+..++....-++...... +.. ......+.+.|++.|+. +..+.- .+ ...
T Consensus 267 ~~~~~~~p~~~~~~~~~~~~~~i~~~~~-~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r 345 (374)
T COG0399 267 GLPGITLPPEPDGAVHAWHLYTILVDEE-GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSER 345 (374)
T ss_pred cCCCccccCCCCCceeeeeeeEEEecCC-CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhC
Confidence 988877654443332222221110 000 23446788899988654 222210 00 011
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ +-+++.++.+|+++++++|+++.
T Consensus 346 ~l~LP~~p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 346 ILSLPLHPNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred eEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 23 44677899999999999999876
No 290
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=97.91 E-value=7.7e-05 Score=85.49 Aligned_cols=283 Identities=12% Similarity=0.064 Sum_probs=188.9
Q ss_pred HHHHHHH-HHHHHhhcc-CCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH-
Q psy852 443 RRHCELA-KLFEGKVRR-DPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV- 519 (891)
Q Consensus 443 ~~~lelA-r~l~~~L~~-~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv- 519 (891)
...++.+ +.+++.+.. .++ +|+ +++|+|+++...+.+.-... ..+.-.|+++..+|++.
T Consensus 62 ~~~~~~~r~~la~~~g~~~~~-~i~--~~~~~t~~i~~~~~~~~~~~---------------~~~gd~vl~~~~~~~s~~ 123 (401)
T PRK10874 62 TARYEAAREQVAQLLNAPDAK-NIV--WTRGTTESINLVAQSYARPR---------------LQPGDEIIVSEAEHHANL 123 (401)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-EEE--EECCHHHHHHHHHHHhhhcc---------------CCCcCEEEECCcchHHHH
Confidence 3334444 467777765 333 566 67788998777665431100 01223588889999774
Q ss_pred ---HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhh-----hhcCC-
Q psy852 520 ---EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYR-----KSQGI- 579 (891)
Q Consensus 520 ---~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~-----~ldGi- 579 (891)
.+.+...|++++.||.+.++.+|+++|+++|+++++ .+++ .+..|+.. |++ .+|++
T Consensus 124 ~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~----lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 124 VPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTR----ILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcE----EEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 344566789999999998899999999999976432 2233 23456554 333 23332
Q ss_pred -----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC---CC---ccc--cCCccc-cc
Q psy852 580 -----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE---GA---IDY--RHWGIP-LS 639 (891)
Q Consensus 580 -----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e---~~---~~~--~~~ti~-~S 639 (891)
-.+|.+++++||+ ++|.|+|+++++++ .+.. + ..+...+.. .. +.. ..+.++ ++
T Consensus 200 ~~g~~~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt 273 (401)
T PRK10874 200 GAVHFPADVQALDIDFYAFSGHKL-YGPTGIGVLYGKSE-LLEA-M---SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGT 273 (401)
T ss_pred ccccccCCchhcCCCEEEEecccc-cCCCccEEEEEchH-HHhc-C---CCeecCCcceEeeccCccCCCCChhhccCCC
Confidence 1379999999995 56999999998755 2211 1 111111000 00 000 001111 12
Q ss_pred cc-ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 640 RR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 640 Rr-~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
.. ...+.+..+++.+...|+.+..++..++++++.+.|+++++++++.++..++++|.+.+. ..+++.+.|.
T Consensus 274 ~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~ 346 (401)
T PRK10874 274 PNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHSDLVTLLA 346 (401)
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHHHHHHHHH
Confidence 22 234678888888888899888899999999999999999999998777888999998643 3467888888
Q ss_pred hCCcEEEeecccc--------CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 719 ASGRLHMVPASQE--------QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 719 ~~G~~~~s~s~~~--------g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++|+.+..++.+. ....+ +|++.++|++|||+++++|+++++
T Consensus 347 ~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~ 397 (401)
T PRK10874 347 EYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALE 397 (401)
T ss_pred HCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 8999876655332 23567 999999999999999999998774
No 291
>PRK07682 hypothetical protein; Validated
Probab=97.91 E-value=0.001 Score=75.56 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=68.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++.+-+++.....+...+.+++.++++ +++.+|+++|++.+.+. +.+|+.+..+|.||.+-+ +++|+
T Consensus 107 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l~ 180 (378)
T PRK07682 107 EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEIA 180 (378)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHHH
Confidence 37777778877777777677788888875 35789999999988643 335556667999999854 88999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-+|+.
T Consensus 181 ~~~~~~~~~ii~De~y~~ 198 (378)
T PRK07682 181 VIVEKHDLIVLSDEIYAE 198 (378)
T ss_pred HHHHHcCcEEEEehhhhh
Confidence 999999999999999954
No 292
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=97.91 E-value=0.0018 Score=75.70 Aligned_cols=289 Identities=9% Similarity=0.057 Sum_probs=156.8
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
++-+.+++.+... .++ ++++||+++..++.++...+..+. + ..+.-.|+++..+|.+...++...
T Consensus 67 ~fe~~lA~~~g~~---~~v--~~~sGt~al~~aL~al~~~~~~~~---------~-~~pGd~VIv~~~t~~a~~~~v~~~ 131 (438)
T PRK15407 67 AFEKKLAEFLGVR---YAL--LVNSGSSANLLAFSALTSPKLGDR---------A-LKPGDEVITVAAGFPTTVNPIIQN 131 (438)
T ss_pred HHHHHHHHHhCCC---eEE--EECCHHHHHHHHHHHHhhcccccc---------C-CCCCCEEEECCCCcHHHHHHHHHc
Confidence 3445555555542 244 567889999998876533221110 1 112335888999999998888888
Q ss_pred CceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcC--C-
Q psy852 527 FVRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQG--I- 579 (891)
Q Consensus 527 gv~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldG--i- 579 (891)
|.+++.++++ .++.+|+++|++++.+.+ ..++++...|... |.++ .+| +
T Consensus 132 G~~pv~vdvd~~~~~id~~~le~~i~~~t----kaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G 207 (438)
T PRK15407 132 GLVPVFVDVELPTYNIDASLLEAAVSPKT----KAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTG 207 (438)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHHcCcCC----eEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeee
Confidence 8899999887 468899999999987532 2344444566654 3331 122 1
Q ss_pred CCccEEE--EcCcccCCcccccEEEEEeCCccchhh--hcc-CCC---------ccccC-CCC----Ccccc-CCcc-cc
Q psy852 580 EYADSFN--VNVNKWLLTAFDSSCLWVADRYKLTSA--LVV-DPL---------YLQHG-HEG----AIDYR-HWGI-PL 638 (891)
Q Consensus 580 ~~aDSIs--~d~HK~L~~P~g~G~llvR~~~~L~~~--l~~-~~~---------Yl~~~-~e~----~~~~~-~~ti-~~ 638 (891)
...|--+ |.+.|-+.+--| |++++++++..... +.. ... +.... ... .+.+. .+.. ..
T Consensus 208 ~~gd~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T PRK15407 208 TFGDIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHL 286 (438)
T ss_pred ccCceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccc
Confidence 1124444 445565543223 77777766533211 111 000 00000 000 00000 0000 00
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCc-EEeCC-Ccee----EEEEEecCCcchhhhhhHHH
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRF-EISND-VRLG----LVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~-eil~~-~~~~----iV~Fr~~~~~~~~~d~ln~~ 712 (891)
+-.++-=.+.+++-....+.+.+.+++..++++++.+.|.++++. .+... +... ...+++.+.. ...-.+
T Consensus 287 G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~Rd~ 362 (438)
T PRK15407 287 GYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA----GFTRVE 362 (438)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC----CCCHHH
Confidence 001122234445555567778889999999999999999887753 23221 2211 2223332210 112457
Q ss_pred HHHHHHhCCcEEE---e-ecc----cc-------C---------CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHM---V-PAS----QE-------Q---------NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 713 L~~~L~~~G~~~~---s-~s~----~~-------g---------~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.+.|.++|+-.. . +.. .. . ...+ +-+++..|++|++.++++|++..
T Consensus 363 l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~ 434 (438)
T PRK15407 363 LVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFF 434 (438)
T ss_pred HHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 8889998887421 1 100 00 0 1123 33566789999999999999876
No 293
>PRK05967 cystathionine beta-lyase; Provisional
Probab=97.91 E-value=0.00082 Score=77.39 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=63.8
Q ss_pred EEEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~ 219 (891)
.|+++...+.+....+ ...|.++..++.+ +.+++++++++.+ -+|.++..+|.++.+.||++|++
T Consensus 105 ~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-----~~e~l~~al~~~T------klV~lesPsNP~l~v~dl~~I~~ 173 (395)
T PRK05967 105 HALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-----IGAGIAKLMRPNT------KVVHTEAPGSNTFEMQDIPAIAE 173 (395)
T ss_pred EEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHHH
Confidence 4788888887776533 3356788887543 3477888886543 48888888888999999999999
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|+++|+++.||.+|+.
T Consensus 174 la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 174 AAHRHGAIVMMDNTWAT 190 (395)
T ss_pred HHHHhCCEEEEECCccC
Confidence 99999999999999843
No 294
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=97.90 E-value=0.002 Score=73.59 Aligned_cols=259 Identities=9% Similarity=0.064 Sum_probs=141.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCcCHHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATL 546 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~mD~~~L 546 (891)
+++|++.++..++.+.- . .+.-.|+++...|.+...++...|.+++.+++|++ +.+|+++|
T Consensus 51 ~~~sgt~al~~~l~~~~---~---------------~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~l 112 (375)
T PRK11706 51 LTPSCTAALEMAALLLD---I---------------QPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLI 112 (375)
T ss_pred EECCHHHHHHHHHHHhC---C---------------CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHH
Confidence 56788888766654320 0 12235888999999999999889999999999877 48999999
Q ss_pred HHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcCC---CCccEEEEcCc--ccCCcccc
Q psy852 547 RQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQGI---EYADSFNVNVN--KWLLTAFD 598 (891)
Q Consensus 547 e~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldGi---~~aDSIs~d~H--K~L~~P~g 598 (891)
++++++.+ ..++++...|+.. |.++ .+|- ...|.-++|.| |.+....
T Consensus 113 e~~i~~~t----k~i~~~~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g~- 187 (375)
T PRK11706 113 EAAITPKT----RAIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGE- 187 (375)
T ss_pred HHhcCCCC----eEEEEeCCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccccccC-
Confidence 99997632 2233445567654 3331 1111 11355556666 9886533
Q ss_pred cEEEEEeCCccchhh--hcc---CCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 599 SSCLWVADRYKLTSA--LVV---DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 599 ~G~llvR~~~~L~~~--l~~---~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
-|++++.+++...+. +.. .......+....+.... +..+-+...+- +++-......+.+..++..++++++
T Consensus 188 gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~--aa~~~~ql~~l~~~~~~R~~~~~~~ 263 (375)
T PRK11706 188 GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVD--IGSSYLPSELQ--AAYLWAQLEAADRINQRRLALWQRY 263 (375)
T ss_pred CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeee--cccccCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666555433211 110 00000000000000000 11111111111 1221222344777788888999999
Q ss_pred HHHhccCCC---cEEeCCC-c----eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEe---ecc-------c---c-
Q psy852 674 EGKVRRDPR---FEISNDV-R----LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMV---PAS-------Q---E- 731 (891)
Q Consensus 674 ~~~L~~~~~---~eil~~~-~----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s---~s~-------~---~- 731 (891)
.+.|.++++ +++...+ . ...+.+++.+ .....++.+.|.++|+.... +.. . .
T Consensus 264 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~ 337 (375)
T PRK11706 264 YDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD------LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHG 337 (375)
T ss_pred HHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC------cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCC
Confidence 999988762 4332111 1 1233344432 12456888899999875211 100 0 0
Q ss_pred --------CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 --------QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 --------g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
....+ +-+++..+++|++.++++|++..
T Consensus 338 ~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 338 EDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred CChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 01133 44677899999999999998753
No 295
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.89 E-value=0.0014 Score=76.00 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=88.7
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ -|+++.. +++|+++.+++ +.+.+...... .. .....|.. +.+......-.+++.+..+
T Consensus 262 pDi~~~--~K~l~gG~~p~~av~~~~~--i~~~~~~~~~~------~~-~~~~~T~~-~np~~~aaa~a~l~~l~~~--- 326 (423)
T PRK05964 262 PDIMCL--SKGLTGGYLPLAATLCTAE--IFEAFYSDDRA------KA-FMHSPSYT-ANPLACAAANASLDLFEDE--- 326 (423)
T ss_pred CCeeee--ehhhhcCcccceEEEEcHH--HHHhhhcCCcc------cc-cccCCCCC-cCHHHHHHHHHHHHHHHhc---
Confidence 576666 4999887 68898777644 22222110000 00 00011111 1222222333344444333
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
+..++..++.++|.+.|++...+..+.+ ....++.|.+.+... +.....+.+.|.++|++... . + ..+ +
T Consensus 327 ~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~---~~~~~~l~~~l~~~Gv~v~~-~---~-~~lR~ 398 (423)
T PRK05964 327 PVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL---ERDGPALRAFALERGVLLRP-L---G-NTIYL 398 (423)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc---hhHHHHHHHHHHHCCeEEEe-c---C-CEEEE
Confidence 3456777788888888876543333322 123456777753210 12466888899999987432 1 2 356 9
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
+++..+|++|||.+++.+++.+.
T Consensus 399 ~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 399 MPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred eCCcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 296
>PRK07568 aspartate aminotransferase; Provisional
Probab=97.89 E-value=0.0023 Score=73.11 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=63.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC-CCCc--ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNS--LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d-~~g~--id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
|+++.-.+......+...+.+++.|+++ ++|. .|+++|++.+++. +.+|+++..+|.+|.+-+ +++|+
T Consensus 115 Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~ 188 (397)
T PRK07568 115 ILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPK------TKAILISNPGNPTGVVYTKEELEMLA 188 (397)
T ss_pred EEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHH
Confidence 5555444443444446667899999987 3443 3578998887653 236677778999999875 78899
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++++|.+|+++
T Consensus 189 ~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 189 EIAKKHDLFLISDEVYREF 207 (397)
T ss_pred HHHHHCCcEEEEeccchhc
Confidence 9999999999999999654
No 297
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=97.86 E-value=0.004 Score=70.94 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=68.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.....++...|.+++.||++++ ..+|+++|++.+.+. +-+|.++..+|.||.+-+ +++|+
T Consensus 117 ~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~ 190 (383)
T TIGR03540 117 IVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELV 190 (383)
T ss_pred EEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHH
Confidence 4677666666666667777889999999753 457999999887543 346666677999999988 68889
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-+|+.
T Consensus 191 ~~a~~~~~~ii~De~y~~ 208 (383)
T TIGR03540 191 EFAKEYNIIVCHDNAYSE 208 (383)
T ss_pred HHHHHcCEEEEEecchhh
Confidence 999999999999999943
No 298
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=97.86 E-value=7.7e-05 Score=86.30 Aligned_cols=281 Identities=16% Similarity=0.124 Sum_probs=184.4
Q ss_pred HHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HH
Q psy852 449 AKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AM 524 (891)
Q Consensus 449 Ar~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~ 524 (891)
.+.+++.+...+.-+|+ +++|+|+++..++........ .+...|+++..+|++.... +.
T Consensus 82 r~~la~~~~~~~~~~v~--~t~g~t~al~~i~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~a~ 144 (424)
T PLN02855 82 RKKVAAFINASTSREIV--FTRNATEAINLVAYTWGLANL---------------KPGDEVILSVAEHHSNIVPWQLVAQ 144 (424)
T ss_pred HHHHHHHcCCCCCCEEE--EeCCHHHHHHHHHHHhhhhcC---------------CCcCEEEECCCccHHHHHHHHHHHH
Confidence 34666677664333677 778999997766543211000 1223588888888875433 34
Q ss_pred HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCc-cEEEEecCCccc--------hhh-----hhcCC-----------
Q psy852 525 MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI-PFFVSTTLGTTS--------CYR-----KSQGI----------- 579 (891)
Q Consensus 525 l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~i-p~~VvataGTT~--------c~~-----~ldGi----------- 579 (891)
..|++++.+|++.++.+|+++|++.|++.++ .+ ...+.+..|+.. |++ .+|+.
T Consensus 145 ~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~--lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~ 222 (424)
T PLN02855 145 KTGAVLKFVGLTPDEVLDVEQLKELLSEKTK--LVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQ 222 (424)
T ss_pred HcCCEEEEEecCCCCCcCHHHHHHHhccCce--EEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCch
Confidence 5689999999988888999999999976321 11 112233456654 433 12321
Q ss_pred -CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC--CCc-c---cc--CCcc-ccccc-ccchHHH
Q psy852 580 -EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE--GAI-D---YR--HWGI-PLSRR-FRSLKLW 648 (891)
Q Consensus 580 -~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e--~~~-~---~~--~~ti-~~SRr-~~aL~lW 648 (891)
..+|.+.+++||+ ++|.|+|+++++++. +.. + ..+...+.. ..+ + +. ...+ .++.. ...+.++
T Consensus 223 ~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~-~~~-~---~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~ 296 (424)
T PLN02855 223 TLGADFLVASSHKM-CGPTGIGFLWGKSDL-LES-M---PPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLG 296 (424)
T ss_pred hcCCCEEEeecccc-cCCCccEEEEEchhh-hhc-C---CCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHH
Confidence 2379999999995 569999999998652 211 1 111111100 000 0 00 0011 11222 2235788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------ceeEEEEEecCCcchhhhhhHHHHHHHHHhC-C
Q psy852 649 FVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------RLGLVCFRLRSENNLIADQNNRKLLEDINAS-G 721 (891)
Q Consensus 649 ~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~-G 721 (891)
.+++.+...|++++.++..++++++.+.|+++++++++++. ..++|+|.+++. ..+.+.+.|.++ |
T Consensus 297 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-------~~~~v~~~L~~~~g 369 (424)
T PLN02855 297 AAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-------HPTDLSTFLDQQHG 369 (424)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-------CHHHHHHHhcccCC
Confidence 88888888899999999999999999999999999998643 358999998643 345788888877 8
Q ss_pred cEEEeecccc-------C-CeEE-EEecCCCCHHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQE-------Q-NDEV-FELQERKRKDDLAYKRSFFVRMLGL 761 (891)
Q Consensus 722 ~~~~s~s~~~-------g-~~~l-~sv~~~tT~edId~li~~L~ei~~~ 761 (891)
+...+++.+. + ...+ +|+++++|++|||+++++|++++..
T Consensus 370 I~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 370 VAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred EEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 8766554221 1 2457 9999999999999999999988753
No 299
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.85 E-value=0.0007 Score=78.98 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=108.0
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecCCc----cc--------
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGT----TS-------- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGT----T~-------- 571 (891)
.|+++...|.+..... .-.|++++.++ +.. |+++|+++|++.++ ++++-+.+. ..
T Consensus 110 ~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~tk-----~V~~e~~~Np~~~v~di~~I~~l 180 (437)
T PRK05613 110 HIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPNTK-----AFFGETFANPQADVLDIPAVAEV 180 (437)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCccCe-----EEEEECCCCCCCcccCHHHHHHH
Confidence 5888888988875433 34688888887 332 89999999876432 222323332 22
Q ss_pred hhh-----hhcCC-----------CCccEEEEcCcccCCcc-cccEEEEEeCCccc-hhhhcc--CCCccccCCCC--Cc
Q psy852 572 CYR-----KSQGI-----------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKL-TSALVV--DPLYLQHGHEG--AI 629 (891)
Q Consensus 572 c~~-----~ldGi-----------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L-~~~l~~--~~~Yl~~~~e~--~~ 629 (891)
|++ .+|+. -++|.+++|.|||++++ -+.|.+++.++..- ...... --.++-..... ..
T Consensus 181 a~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (437)
T PRK05613 181 AHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGL 260 (437)
T ss_pred HHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccc
Confidence 333 13331 25899999999999876 34566666433210 000000 00000000000 00
Q ss_pred ---cccC----------CcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC------C-
Q psy852 630 ---DYRH----------WGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND------V- 689 (891)
Q Consensus 630 ---~~~~----------~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~------~- 689 (891)
+++. +....+-...+...|+.+ -|.+-+.-++++..++|.++++.|+++|.++-+.- |
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~--rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~ 338 (437)
T PRK05613 261 KYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTA--QGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPW 338 (437)
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCcc
Confidence 0000 000011112245556554 48888999999999999999999999998753321 1
Q ss_pred ------c-----eeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 690 ------R-----LGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 690 ------~-----~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+ -++++|.+++. .....++++.|+-
T Consensus 339 ~~~~~~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l~l 374 (437)
T PRK05613 339 YATKEKLGLKYTGSVLSFDIKGG-----KDEAWAFIDALKL 374 (437)
T ss_pred HHHHHHhcCCCCceEEEEEecCC-----HHHHHHHHHhCCc
Confidence 1 35999999642 1233455555543
No 300
>PRK07550 hypothetical protein; Provisional
Probab=97.84 E-value=0.00038 Score=79.42 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=67.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-++......+...|.+++.|+.|+ .+.+|+++|++.+++. +.+|+++..+|.+|.+-+ +++|++
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~~ 190 (386)
T PRK07550 117 VILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELYD 190 (386)
T ss_pred EEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHHH
Confidence 66666565555555567788999999974 3568999999988753 234455567899998876 789999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|++|.+|+.+
T Consensus 191 ~~~~~~~~iI~Dd~y~~~ 208 (386)
T PRK07550 191 LARRHGIALILDETYRDF 208 (386)
T ss_pred HHHHcCeEEEEeccchhh
Confidence 999999999999999654
No 301
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=97.83 E-value=0.0034 Score=70.81 Aligned_cols=238 Identities=9% Similarity=0.081 Sum_probs=133.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-.......++...|.+++.+|.++++.+|
T Consensus 78 ~i~--it~G~~~~l~~~~~~l----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d 136 (351)
T PRK14807 78 NIF--VGNGSDEIIHLIMLAF----IN---------------KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYD 136 (351)
T ss_pred cEE--EecCHHHHHHHHHHHh----cC---------------CCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCC
Confidence 555 6788888877665542 11 11135555555555666677889999999998889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-------------C-Ccc-EEEEcCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-------------E-YAD-SFNVNVNK 591 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-------------~-~aD-SIs~d~HK 591 (891)
+++|+++++... ...++++ +-.|++. |.++ +|.+ . .-. -+.-+..|
T Consensus 137 ~~~l~~~~~~~~---~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK 213 (351)
T PRK14807 137 VGSFIKVIEKYQ---PKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSK 213 (351)
T ss_pred HHHHHHHhhccC---CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchH
Confidence 999999987521 1123332 2345443 1110 1110 0 001 12233445
Q ss_pred cCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy852 592 WLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670 (891)
Q Consensus 592 ~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA 670 (891)
.++.| .-+|+++. +++ +.+.+.... . ......+.+..+.+.+....+++.++...+.+
T Consensus 214 ~~~~~GlRiG~~v~-~~~-~~~~~~~~~--------------~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r 272 (351)
T PRK14807 214 AFGLAGLRVGYAVA-NEN-ILKYLNLVK--------------S-----PYNINSLSQVIALKVLRTGVLKERVNYILNER 272 (351)
T ss_pred hcccchhceeeeec-CHH-HHHHHHHcc--------------C-----CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55433 33444442 111 111111000 0 00112344555555554445677777778888
Q ss_pred HHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecc-ccCCeEE-EEecCCCCHHHH
Q psy852 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS-QEQNDEV-FELQERKRKDDL 748 (891)
Q Consensus 671 ~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~-~~g~~~l-~sv~~~tT~edI 748 (891)
+++.+.|++.+++.+. ++..+.+.+++. ....+.+.|.+.|+.+..... ......+ +++. +.++.
T Consensus 273 ~~l~~~l~~~~g~~~~-~~~~~~~~i~~~---------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~ 339 (351)
T PRK14807 273 ERLIKELSKIPGIKVY-PSKTNFILVKFK---------DADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEAN 339 (351)
T ss_pred HHHHHHHHhCCCcEEC-cCCccEEEEEcC---------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHH
Confidence 8899999888888764 455555666663 135778888888977543221 1223455 7765 67889
Q ss_pred HHHHHHHHHH
Q psy852 749 AYKRSFFVRM 758 (891)
Q Consensus 749 d~li~~L~ei 758 (891)
++++++|+++
T Consensus 340 ~~l~~~l~~~ 349 (351)
T PRK14807 340 DYLINGLKEL 349 (351)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 302
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=97.83 E-value=0.00063 Score=76.15 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=61.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~ 221 (891)
|++..-++.+....+...+.+++.++ |++.|++.+.+ . -+|+++..+|.+|.+-+ +++|+++|
T Consensus 89 vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~~~l~~~~~~-~------~~v~i~~p~NPtG~~~~~~~~~~l~~~a 154 (330)
T TIGR01140 89 VLVLAPTYSEYARAWRAAGHEVVELP-------DLDRLPAALEE-L------DVLVLCNPNNPTGRLIPPETLLALAARL 154 (330)
T ss_pred EEEeCCCcHHHHHHHHHcCCEEEEeC-------CHHHHHhhccc-C------CEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 55556677777777777778888887 88999887732 1 26666778999999999 66677888
Q ss_pred HHcCCceeeeccccCC
Q psy852 222 KEFDVWLHVDGAYAGS 237 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~ 237 (891)
+++|+++++|.+|+++
T Consensus 155 ~~~~~~ii~De~y~~~ 170 (330)
T TIGR01140 155 RARGGWLVVDEAFIDF 170 (330)
T ss_pred HhcCCEEEEECccccc
Confidence 9999999999999543
No 303
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=97.83 E-value=0.0018 Score=73.18 Aligned_cols=215 Identities=9% Similarity=0.010 Sum_probs=127.1
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh--
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR-- 574 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~-- 574 (891)
.|+++.-.+......+...|.+++.+|. .++.+|+++|++++++.. ..++++ +..|++. |..
T Consensus 110 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 184 (367)
T PRK02731 110 EVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPRT----RLVFIANPNNPTGTYLPAEEVERFLAGVP 184 (367)
T ss_pred EEEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCCC----cEEEEeCCCCCCCcCCCHHHHHHHHHhCC
Confidence 4666666666666666778899999998 457899999999986421 122222 2345554 111
Q ss_pred -----hhcC--------------CC----CccEE-EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCc
Q psy852 575 -----KSQG--------------IE----YADSF-NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 629 (891)
Q Consensus 575 -----~ldG--------------i~----~aDSI-s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~ 629 (891)
.+|. +. .-+.| .-+..|.++.| ..+|+++..++ +.+.+.....
T Consensus 185 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~--~~~~l~~~~~---------- 252 (367)
T PRK02731 185 PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPE--IIDALNRVRQ---------- 252 (367)
T ss_pred CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHH--HHHHHHHccC----------
Confidence 0111 00 01122 22567877544 56788876532 2222211000
Q ss_pred cccCCcccccccccchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhh
Q psy852 630 DYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 630 ~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ 708 (891)
.+. ...+.++++...+-... +++..++..++.+++.+.|++. ++.+. ++..+.+++++.+. .
T Consensus 253 ---~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~------~ 315 (367)
T PRK02731 253 ---PFN------VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDG------K 315 (367)
T ss_pred ---CCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCC------C
Confidence 001 11344555555554333 4566666677888888989886 66655 45667888887321 2
Q ss_pred hHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...++.+.|.+.|+.+..+........+ ++++ +.+++++++++|+++.
T Consensus 316 ~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 316 DAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFL 364 (367)
T ss_pred CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHH
Confidence 4567888998899875544333223456 8875 7899999999998865
No 304
>PRK12414 putative aminotransferase; Provisional
Probab=97.83 E-value=0.00019 Score=81.97 Aligned_cols=85 Identities=6% Similarity=0.077 Sum_probs=69.7
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i 220 (891)
|+++.-+|......+...|.+++.|++++ ++.+|++.|++.+++. +.+|+++..+|.||.+ +++++|+++
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~~ 190 (384)
T PRK12414 117 VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQL 190 (384)
T ss_pred EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHHH
Confidence 66777778777777776778999999874 5689999999988643 3466667789999997 678899999
Q ss_pred HHHcCCceeeecccc
Q psy852 221 AKEFDVWLHVDGAYA 235 (891)
Q Consensus 221 ~~~~~~~lHvDaA~G 235 (891)
|+++++++.+|.+|+
T Consensus 191 a~~~~~~ii~De~Y~ 205 (384)
T PRK12414 191 TRNTDIVILSDEVYE 205 (384)
T ss_pred HHHCCeEEEEhhhhh
Confidence 999999999999994
No 305
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=97.82 E-value=0.00048 Score=78.96 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=70.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~i 220 (891)
|++..-++......+...|.+++.++++++ +.+|++.|++.+++.. ..+-+|+++..+|.||.+- ++++|+++
T Consensus 118 vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~ 194 (391)
T PRK07309 118 VLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG---DKLKAVILNYPANPTGVTYSREQIKALADV 194 (391)
T ss_pred EEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC---CCeEEEEEECCCCCCCcCcCHHHHHHHHHH
Confidence 666666777777777777889999998765 4799999999986531 1234666677899999874 58899999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++++++++|.+|+.+
T Consensus 195 ~~~~~~~ii~D~~y~~~ 211 (391)
T PRK07309 195 LKKYDIFVISDEVYSEL 211 (391)
T ss_pred HHHcCcEEEEEccccce
Confidence 99999999999999543
No 306
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.0045 Score=70.53 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=142.8
Q ss_pred HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEecC--Cccc--------hhhh-----hcCC----
Q psy852 519 VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTL--GTTS--------CYRK-----SQGI---- 579 (891)
Q Consensus 519 v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvata--GTT~--------c~~~-----ldGi---- 579 (891)
+.+-+...|.+++.+.++..-.+|+++++++|+++..- ...++|-++. |... |++| +|++
T Consensus 95 ~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~-~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~G 173 (383)
T COG0075 95 FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDI-KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLG 173 (383)
T ss_pred HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCc-cEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCC
Confidence 44555667889999999877889999999999964321 1233333332 3332 3333 4443
Q ss_pred --------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccC-C-CccccCCC-CCc---cccCCcccccccccch
Q psy852 580 --------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVD-P-LYLQHGHE-GAI---DYRHWGIPLSRRFRSL 645 (891)
Q Consensus 580 --------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~-~-~Yl~~~~e-~~~---~~~~~ti~~SRr~~aL 645 (891)
=++|-+....+|.+++|-|.|++.++++.. ....... + -|+.=... ..+ ....+|.+- ---.
T Consensus 174 g~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~-e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv---~~i~ 249 (383)
T COG0075 174 GEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERAL-EAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPV---NLIY 249 (383)
T ss_pred CcccchhhcCccEEEecCchhccCCCccceeEECHHHH-HHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCH---HHHH
Confidence 137999999999999999999999987742 1111111 1 23320000 000 011122211 0123
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC--ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 646 KLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV--RL-GLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 646 ~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~--~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
.+-.+|+.+-.+|++++++++..+++++.+.+++. +|+++.++ .+ .+++|+.+.. .+ ...+...+.+++.
T Consensus 250 aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g----~~--~~~~~~~~~~~~g 322 (383)
T COG0075 250 ALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG----VD--DKKVRRALLKEYG 322 (383)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC----CC--cHHHHHHHHHhCC
Confidence 56678889999999999999999999999999986 78887644 23 5667776432 11 2233335555533
Q ss_pred EEEeecc-ccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 723 LHMVPAS-QEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 723 ~~~s~s~-~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+.+.+.. .-...++ |..+-..+.+|+..++.+|+..+.
T Consensus 323 ~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~ 362 (383)
T COG0075 323 VEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALR 362 (383)
T ss_pred EEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 3344433 2222344 764448899999999999998774
No 307
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=97.81 E-value=0.0029 Score=72.49 Aligned_cols=276 Identities=9% Similarity=0.097 Sum_probs=148.1
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHc
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA 526 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~ 526 (891)
+..+++++.... + .++ +++|+++++..++.+.. ..+.-.|+++...|.+...++...
T Consensus 35 ~~e~~la~~~g~-~--~~v--~~~sgt~aL~~~l~al~------------------~~pGd~Viv~~~t~~~~~~~~~~~ 91 (376)
T TIGR02379 35 RCETWLENRTGT-K--KAL--LTPSCTAALEMAALLLD------------------IQPGDEVIMPSYTFVSTANAFVLR 91 (376)
T ss_pred HHHHHHHHHhCC-C--eEE--EeCCHHHHHHHHHHHcC------------------CCCcCEEEECCCCcHHHHHHHHHc
Confidence 334455555443 2 244 56788888776655421 012235888889999998888888
Q ss_pred CceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEecCCccc--------hhhh---------------hcC--C-
Q psy852 527 FVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS--------CYRK---------------SQG--I- 579 (891)
Q Consensus 527 gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~--------c~~~---------------ldG--i- 579 (891)
|.+++.+++|++ +.+|+++|++++++.++ .++++...|+.. |+++ .+| +
T Consensus 92 G~~~v~vd~d~~~~~~d~~~le~~i~~~tk----~Iip~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g 167 (376)
T TIGR02379 92 GAKIVFVDIRPDTMNIDETLIESAITHRTK----AIVPVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALG 167 (376)
T ss_pred CCEEEEEecCCCcCCCCHHHHHHhcCcCce----EEEEeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccC
Confidence 999999999876 68999999999876422 233445566654 3331 222 1
Q ss_pred CCccEEEEcCc--ccCCcccccEEEEEeCCccchhhhccCCCccccC-----CCCCccccCCcccccccccchHHHHHHH
Q psy852 580 EYADSFNVNVN--KWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHG-----HEGAIDYRHWGIPLSRRFRSLKLWFVIR 652 (891)
Q Consensus 580 ~~aDSIs~d~H--K~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~-----~e~~~~~~~~ti~~SRr~~aL~lW~~L~ 652 (891)
...|.-+||+| |-+..-...|++++.+++.....-.......... ....+.+...+.. . +..-+. +++-
T Consensus 168 ~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n-~-~~~~~~--Aa~g 243 (376)
T TIGR02379 168 SIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSS-Y-LPSELQ--AAYL 243 (376)
T ss_pred CCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeeccc-C-CccHHH--HHHH
Confidence 11244445544 4443211357788877654432211110000000 0000000001110 0 111121 1222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCC--C-cEEeC-CCce----eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEE
Q psy852 653 TYGLSGLQKYIRRHCELAKLFEGKVRRDP--R-FEISN-DVRL----GLVCFRLRSENNLIADQNNRKLLEDINASGRLH 724 (891)
Q Consensus 653 ~lG~~G~~~~i~~~~~lA~~L~~~L~~~~--~-~eil~-~~~~----~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~ 724 (891)
.-..+.+.+.+++..+++++..+.|...+ + +++.. ++.. ...++++.+. ....++.+.|.++|+..
T Consensus 244 ~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~r~~l~~~L~~~gI~~ 317 (376)
T TIGR02379 244 WAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE------DDRNELIKYLKEQEIMA 317 (376)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc------CCHHHHHHHHHHCCCCc
Confidence 22345677778888888888888887754 2 22221 1111 2333444321 13468888999988752
Q ss_pred Ee---ecc-------c---cC---------CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 725 MV---PAS-------Q---EQ---------NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 725 ~s---~s~-------~---~g---------~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.. +.. . .+ ...+ +-+++..|++|+++++++|++..
T Consensus 318 ~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 318 VFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred cccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 11 100 0 00 1234 55778899999999999998753
No 308
>PRK08064 cystathionine beta-lyase; Provisional
Probab=97.81 E-value=0.0015 Score=75.19 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=123.6
Q ss_pred EEecccchHHHH----HHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hh
Q psy852 509 AYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~Sv~----Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~ 573 (891)
|+++...|.+.. +.+...|++++.++.+ |+++|++++++.++ .+++. +..|... |+
T Consensus 95 Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~tk----lV~l~~p~NptG~~~dl~~I~~la~ 165 (390)
T PRK08064 95 VLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPNTK----LFYVETPSNPLLKVTDIRGVVKLAK 165 (390)
T ss_pred EEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCce----EEEEECCCCCCcEeccHHHHHHHHH
Confidence 666777665433 3334568888888874 68888888865321 22222 1234332 22
Q ss_pred hh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 574 RK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 574 ~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
++ +|+ + -++|-+..++|||+++|-+ .|++++++++........... +
T Consensus 166 ~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~--------------~- 230 (390)
T PRK08064 166 AIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNS--------------F- 230 (390)
T ss_pred HcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHh--------------c-
Confidence 21 121 1 2479999999999999987 588887765433221101000 0
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcE-EeCC-----C-----------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFE-ISND-----V-----------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~e-il~~-----~-----------~~~iV~Fr~ 698 (891)
+-...+...|..+ .|..-+..++++..+++..+.+.|++.|.+. +.-+ | ..++|+|.+
T Consensus 231 ---g~~~~~~~a~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~ 305 (390)
T PRK08064 231 ---GAVLGVQDCWLVL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL 305 (390)
T ss_pred ---CCCCCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEE
Confidence 1111223455543 4666678899999999999999999887653 2211 1 236999999
Q ss_pred cCCcchhhhhhHHHHHHHHHhCCcEEEee--------------ccc-------cC--CeEE-EEecCCCCHHHHHHHHHH
Q psy852 699 RSENNLIADQNNRKLLEDINASGRLHMVP--------------ASQ-------EQ--NDEV-FELQERKRKDDLAYKRSF 754 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~~~G~~~~s~--------------s~~-------~g--~~~l-~sv~~~tT~edId~li~~ 754 (891)
.+. + ...++++.|.--......+ +.. .| ...+ +|++.+.+++.|+.+.++
T Consensus 306 ~~~-----~-~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~A 379 (390)
T PRK08064 306 QSE-----E-AVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQA 379 (390)
T ss_pred CCH-----H-HHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 532 1 2223344332210011111 000 11 3466 999999888888888888
Q ss_pred HHHH
Q psy852 755 FVRM 758 (891)
Q Consensus 755 L~ei 758 (891)
|+++
T Consensus 380 l~~~ 383 (390)
T PRK08064 380 LSYV 383 (390)
T ss_pred HHhc
Confidence 8764
No 309
>PRK07337 aminotransferase; Validated
Probab=97.81 E-value=0.00034 Score=79.91 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=70.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-+|.+....+...+.+++.+++|. ++.+|+++|++.+.+.+ .+|+.+..+|.||.+-+ +++|+
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (388)
T PRK07337 116 EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERT------RGVLLASPSNPTGTSIAPDELRRIV 189 (388)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccc------eEEEEECCCCCCCcCcCHHHHHHHH
Confidence 377778888888877766677899999875 46899999999886532 35666778999999766 67888
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-+|.+
T Consensus 190 ~~a~~~~~~ii~De~y~~ 207 (388)
T PRK07337 190 EAVRARGGFTIVDEIYQG 207 (388)
T ss_pred HHHHHCCCEEEEeccccc
Confidence 899999999999999954
No 310
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=97.81 E-value=0.0013 Score=74.48 Aligned_cols=245 Identities=15% Similarity=0.170 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC---CCCCCcCHHHHHHHH
Q psy852 474 ECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVM 550 (891)
Q Consensus 474 ean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~---d~~G~mD~~~Le~aI 550 (891)
.+..+||.+.| ..++. -.|+.+...|+|-.||+...|.+++.||. .+.-..|++++++.|
T Consensus 86 m~l~l~l~~l~--~r~~a---------------~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i 148 (389)
T PF05889_consen 86 MSLTLCLLALR--MRPKA---------------KYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKI 148 (389)
T ss_dssp HHHHHHHHHHH--HHCT-----------------EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHH
T ss_pred cHHHHHHHHHh--cccCC---------------ceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHH
Confidence 67888899988 22221 14888999999999999999999999985 234567899999999
Q ss_pred HhhhhcCCcc-EEEEec-CCccc------------hhh----h----hcCC---------------CCccEEEEcCcccC
Q psy852 551 QQDETMGYIP-FFVSTT-LGTTS------------CYR----K----SQGI---------------EYADSFNVNVNKWL 593 (891)
Q Consensus 551 ~~d~~~g~ip-~~Vvat-aGTT~------------c~~----~----ldGi---------------~~aDSIs~d~HK~L 593 (891)
++. |..+ ++|..+ .+... |++ | .-|+ .++|-+.=+.-|=+
T Consensus 149 ~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF 225 (389)
T PF05889_consen 149 EEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNF 225 (389)
T ss_dssp HHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHH
T ss_pred HHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCE
Confidence 664 3333 333322 12111 333 1 1244 78899999999999
Q ss_pred CcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc--cchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 594 LTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF--RSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 594 ~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~--~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
++|.|=+++...++..+.. ....|- +|-+ ..+-+-..|..+|..||...+....++-.
T Consensus 226 ~VPvGgai~As~~~~~i~~---vs~~Yp-----------------GRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~ 285 (389)
T PF05889_consen 226 MVPVGGAIMASFDPSGILA---VSKEYP-----------------GRASASPSLDLFITLLSLGCTGYGALLKERKASFP 285 (389)
T ss_dssp CEESSHEEEEESSHHHHHH---HHHTSH-----------------SHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcEEEecCHHHHHH---HHHHhh-----------------hhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999988877766543321 111221 2211 23667788999999999999999999999
Q ss_pred HHHHHhccCC---CcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE---EEeeccccCC--------eEE
Q psy852 672 LFEGKVRRDP---RFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDINASGRL---HMVPASQEQN--------DEV 736 (891)
Q Consensus 672 ~L~~~L~~~~---~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~---~~s~s~~~g~--------~~l 736 (891)
++.++|++.. +-.++..|. .-.+.|........ .+...-.|...|-.+|+. .+++..-... .++
T Consensus 286 ~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~-~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Yl 364 (389)
T PF05889_consen 286 YLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEI-SQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYL 364 (389)
T ss_dssp HHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTC-CSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEE
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhh-ccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHH
Confidence 9999997631 223333333 33555665433211 113445778888776543 2222111111 345
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.....+++||||.+++.|++++
T Consensus 365 t~AsaiG~~~eevd~~v~rL~k~i 388 (389)
T PF05889_consen 365 TAASAIGMTREEVDYFVKRLDKII 388 (389)
T ss_dssp EEEE-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHh
Confidence 65667899999999999999876
No 311
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=97.78 E-value=0.0019 Score=72.81 Aligned_cols=212 Identities=10% Similarity=0.056 Sum_probs=118.4
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK- 575 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~- 575 (891)
.|+++.-.+......+...|.+++.+|.+.++.+|+++|++.++... ..++++ +..|+.. |.++
T Consensus 113 ~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 188 (361)
T PRK00950 113 EVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKT----KVIFLCTPNNPTGNLIPEEDIRKILESTD 188 (361)
T ss_pred EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCC----CEEEEeCCCCCCCCCcCHHHHHHHHHHCC
Confidence 36666656666666777889999999988888999999999886421 122222 3345554 2221
Q ss_pred ----hcCC-------------CCccEE--EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 576 ----SQGI-------------EYADSF--NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 576 ----ldGi-------------~~aDSI--s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
+|.. ...|.+ .-+..|.++.| .-+|+++..++ +...+..... .++
T Consensus 189 ~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~--~~~~~~~~~~-------------~~~ 253 (361)
T PRK00950 189 ALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEW--LIDYYMRAKT-------------PFS 253 (361)
T ss_pred cEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHH--HHHHHHHhcC-------------CCC
Confidence 1111 011211 22566766544 23455543221 1111110000 000
Q ss_pred ccccccccchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHH
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
...+.++.++..+...+ +++..++..++++++.+.|. +.+. ++..+.+++++.+. ...++.
T Consensus 254 ------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~~~-------~~~~~~ 315 (361)
T PRK00950 254 ------LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVTPM-------TAKEFC 315 (361)
T ss_pred ------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECCCC-------CHHHHH
Confidence 11234444444443333 45555666666777777765 4443 45567777887422 456888
Q ss_pred HHHHhCCcEEEeeccc--cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQ--EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~--~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+.|.++|+.+..+... .+...+ ++++ +.+++++++++|+++.
T Consensus 316 ~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 316 EELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred HHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 8998899775443332 223456 8876 7789999999998764
No 312
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=97.77 E-value=0.00025 Score=80.08 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=67.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC-HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN-LAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp-l~~I~~i 220 (891)
|+.|...|+|-.|++...|.+++.||.. +.-..|++++++.+++. |..+++.+.|.-+-..+-.-| +.+|+++
T Consensus 104 Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~Iaki 180 (389)
T PF05889_consen 104 VIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKI 180 (389)
T ss_dssp EEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHH
T ss_pred EEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHH
Confidence 7778899999999998888888888852 33456888899888543 555788888888888888855 9999999
Q ss_pred HHHcCCceeeeccc
Q psy852 221 AKEFDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~~~~~lHvDaA~ 234 (891)
|++||++..+.+||
T Consensus 181 C~~~~IPhlvNnAY 194 (389)
T PF05889_consen 181 CKEYDIPHLVNNAY 194 (389)
T ss_dssp HHHHT--EEEEGTT
T ss_pred HHHcCCceEEccch
Confidence 99999999999999
No 313
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=97.77 E-value=0.0045 Score=69.82 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=68.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-+.......+...|.+++.|++|+++.+|+++|+++++... +-+|+++..+|.||.+-+.+++.++++++
T Consensus 103 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~-----~k~v~l~~p~NPtG~~~~~~~l~~l~~~~ 177 (351)
T PRK14807 103 VIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQ-----PKLVFLCNPNNPTGSVIEREDIIKIIEKS 177 (351)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 5555555444455556778899999999889999999999886421 23566667899999999999999999998
Q ss_pred CCceeeeccccC
Q psy852 225 DVWLHVDGAYAG 236 (891)
Q Consensus 225 ~~~lHvDaA~GG 236 (891)
+.++-+|.+|+.
T Consensus 178 ~~~~ivDe~y~~ 189 (351)
T PRK14807 178 RGIVVVDEAYFE 189 (351)
T ss_pred CCEEEEeCcchh
Confidence 888888999943
No 314
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=97.77 E-value=0.0071 Score=69.57 Aligned_cols=265 Identities=12% Similarity=0.124 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccc-hHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEA-HSCVEKA 522 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~a-H~Sv~Ka 522 (891)
...++++.+.+.+. .+ .++ ++++|+++|..|+..||.....+ .|...++.+|++-..+ |-+..-+
T Consensus 80 ~~~~l~~~l~~~~~-~~--~~~--~~~SGs~A~e~ai~~a~~~~~~~---------~~~~~~~~~i~~~~~~yhg~~~~~ 145 (401)
T TIGR01885 80 VFGEFAEYVTKLFG-YD--KVL--PMNTGAEAVETAIKLARKWGYKV---------KGIPENQAIIVSAKGNFHGRTLGA 145 (401)
T ss_pred HHHHHHHHHHhhcC-CC--EEE--EeCccHHHHHHHHHHHHHHhhhh---------cCCCCCCCEEEEECCCcCcccHHH
Confidence 34556666666653 12 333 67889999999999999864322 1222234455555555 4343334
Q ss_pred HHHcCc------------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEE-EEe---cCCccc------------hhh
Q psy852 523 AMMAFV------------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFF-VST---TLGTTS------------CYR 574 (891)
Q Consensus 523 a~l~gv------------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~-Vva---taGTT~------------c~~ 574 (891)
..+.+- ++..+|.+ |+++|+++|++.. ..+..+ +-. +.|... |.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~--~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~ 218 (401)
T TIGR01885 146 ISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG--PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTK 218 (401)
T ss_pred HhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC--CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence 333221 12223321 5777887776421 122222 211 222221 322
Q ss_pred h-----------------------hcCCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCcc
Q psy852 575 K-----------------------SQGIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID 630 (891)
Q Consensus 575 ~-----------------------ldGi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~ 630 (891)
+ ..++ ..|.++++ |.+++. +.+|+++.+.. +.+.+.. .+.
T Consensus 219 ~~~lli~DEv~~g~g~~G~~~~~~~~~~-~~di~~~g--K~l~~g~~~ig~v~~~~~--i~~~~~~--~~~--------- 282 (401)
T TIGR01885 219 HNVLLIADEIQTGLGRTGKLLCVDHENV-KPDIVLLG--KALSGGVYPVSAVLADDD--VMLTIKP--GEH--------- 282 (401)
T ss_pred cCCEEEEechhhCCCccchhhHHhhcCC-CCCEEEee--ccccCCCCCcEEEEEcHH--HHhhccC--CCC---------
Confidence 1 1122 25777775 988765 45777776533 2221110 000
Q ss_pred ccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhh
Q psy852 631 YRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQ 708 (891)
Q Consensus 631 ~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ 708 (891)
..+.. +-+........+|+.+..+.+. ++..+++++|.+.|++++ ..++.. ..-.+..+.+..... ..
T Consensus 283 --~~t~~-~~p~~~~aa~a~L~~i~~~~l~---~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~~---~~ 352 (401)
T TIGR01885 283 --GSTYG-GNPLACAVAVAALEVLEEEKLA---ENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESKT---GR 352 (401)
T ss_pred --CCCCC-CCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCcc---hh
Confidence 11111 1233333344555555444433 466677899999998863 122221 122343444432100 12
Q ss_pred hHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 709 NNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 709 ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...++.+.|.+.|++. .+. +...+ |+++..+|++|||++++.|++..
T Consensus 353 ~~~~l~~~l~~~Gv~v-~~~---~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 353 TAWDLCLKLKEKGLLA-KPT---HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHHHHHHHHhCCEEE-Eec---CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 4568888998899774 332 23456 98888899999999999998754
No 315
>PRK06225 aspartate aminotransferase; Provisional
Probab=97.77 E-value=0.00023 Score=81.10 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=66.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC---CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD---KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~---~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~ 218 (891)
|+++.-++......+...|.+++.++++. ++.+|+++|++.+...+ .+|+++..+|.+|.+ +++.+|+
T Consensus 110 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NptG~~~~~~~~~~i~ 183 (380)
T PRK06225 110 AVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENT------RLIYLIDPLNPLGSSYTEEEIKEFA 183 (380)
T ss_pred EEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCc------eEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 55555666666666666777899998743 35899999999886542 356666678899986 4599999
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++|+++++|.+|+.
T Consensus 184 ~~a~~~~~~ii~De~y~~ 201 (380)
T PRK06225 184 EIARDNDAFLLHDCTYRD 201 (380)
T ss_pred HHHHHCCcEEEEehhHHH
Confidence 999999999999999954
No 316
>PLN00175 aminotransferase family protein; Provisional
Probab=97.76 E-value=0.00062 Score=78.78 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=70.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC-CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~i 220 (891)
|++.+-.+......+...|.+++.|++++ ++.+|+++|++.+.... -+|+++..+|.||.+- .+++|+++
T Consensus 142 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~------k~i~i~~p~NPtG~~~s~~~l~~l~~~ 215 (413)
T PLN00175 142 VILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKT------RAILINTPHNPTGKMFTREELELIASL 215 (413)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCc------eEEEecCCCCCCCcCCCHHHHHHHHHH
Confidence 66666677777777777788999999974 57899999999886532 3666778889999996 57788999
Q ss_pred HHHcCCceeeeccccCC
Q psy852 221 AKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG~ 237 (891)
|+++++++++|-+|+.+
T Consensus 216 a~~~~~~ii~De~Y~~l 232 (413)
T PLN00175 216 CKENDVLAFTDEVYDKL 232 (413)
T ss_pred HHHcCcEEEEecccCcc
Confidence 99999999999999554
No 317
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=97.76 E-value=0.00055 Score=78.24 Aligned_cols=259 Identities=11% Similarity=-0.048 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q psy852 29 SYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQS 108 (891)
Q Consensus 29 ~~~~~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~ 108 (891)
.+|.+..+- +-+........+|.+.++-.++.+.|.++++.|++.. -+ ..
T Consensus 14 ~~~~~~~~~---~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~-------v~--------------------~l 63 (374)
T TIGR01365 14 KRPGWSIEE---LKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYL-------IG--------------------IV 63 (374)
T ss_pred CCchhhHHH---HhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcE-------EE--------------------EE
Confidence 456653333 3334444446799999999999999999999864420 00 13
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHH---HHHHHcCC-eEEEEecCCCCcccHHHHHH
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVE---KAAMMAFV-RLKILEPDDKNSLRGATLRQ 184 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~---kaa~~~~~-~v~~V~~d~~g~id~~~L~~ 184 (891)
+++||.+--+...++.... +..++++. .|+-. +.+...+. ++..|+.+..-.+|+++++.
T Consensus 64 ~GsGT~a~Eaa~~nl~~~~-------------g~~vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~ 127 (374)
T TIGR01365 64 PASDTGAVEMALWSMLGCR-------------GVDVLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF 127 (374)
T ss_pred CCchHHHHHHHHHHcCCCC-------------CCeEEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC
Confidence 4667643223333332110 11223332 55543 44444565 57788766666789999872
Q ss_pred HHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeec--cccCCccccCCCCccCCCCcccccCCCCcc
Q psy852 185 VMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDG--AYAGSSFICPEFRPFMNGKTSFDNLHLSPI 262 (891)
Q Consensus 185 ~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDa--A~GG~~~~~~~~~~~~~g~~~~d~~~~s~~ 262 (891)
. + -|++|+..|.||...|+++|++.+ ++..+.||+ ++||--+
T Consensus 128 ----~-~------~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l----------------------- 171 (374)
T TIGR01365 128 ----K-N------DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDL----------------------- 171 (374)
T ss_pred ----C-C------CEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCC-----------------------
Confidence 1 1 267999999999999998776432 467788887 3432110
Q ss_pred cccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccccceEEEeecccc
Q psy852 263 WYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYA 342 (891)
Q Consensus 263 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 342 (891)
T Consensus 172 -------------------------------------------------------------------------------- 171 (374)
T TIGR01365 172 -------------------------------------------------------------------------------- 171 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCc-----cccCCCCCCcccccccccCC
Q psy852 343 GSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP-----LYLQHGHEGAIDYRHWGIPL 417 (891)
Q Consensus 343 ~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~-----~y~~~~~~~~~~~~~~~~~~ 417 (891)
.++ .+|-+....+|.+.+|-+.|+++++++..-. .-...+ .|+.....+.+.. +.-.+
T Consensus 172 -----------~~d---~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~ 234 (374)
T TIGR01365 172 -----------DYH---KLDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LESYTPAWPLPKIFRLTKGGKLNK--KIFEG 234 (374)
T ss_pred -----------Chh---HCcEEEEechhccCCCCceEEEEECHHHHHH-HhhcCCCCCChhhhccccccchhh--hhhcC
Confidence 011 2699999999999999999999998764322 111111 2222111000000 00011
Q ss_pred CCCh-h-HHHHHHH---HHHhcHH-HHHHHHHHHHHHHHHHHHhhccCCcccccc
Q psy852 418 SRRF-R-SLKLWFV---IRTYGLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISN 466 (891)
Q Consensus 418 sr~~-~-~l~~w~~---l~~~g~~-G~~~ii~~~lelAr~l~~~L~~~~~~eVv~ 466 (891)
.-++ - ...+++. ++.+-.+ |+.++.++..++++.+++.+.+...++++.
T Consensus 235 ~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~ 289 (374)
T TIGR01365 235 STINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLA 289 (374)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 1222 1 1233433 4444465 899999999999999999999876566663
No 318
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=97.76 E-value=0.0016 Score=75.02 Aligned_cols=185 Identities=10% Similarity=0.098 Sum_probs=109.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-H---HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~---l~gv~v~~Vp~d~~G~mD~ 543 (891)
++.|+++++..++.+. .+ +.-.|+++...|.+....+ . ..+++++.++. .|+
T Consensus 73 vt~gg~~Ai~~~l~al----l~---------------~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~ 128 (388)
T PRK08861 73 VTNCGTSALNLWVSAL----LG---------------PDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDA 128 (388)
T ss_pred EECCHHHHHHHHHHHH----cC---------------CCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCH
Confidence 5678888888777653 11 1123666666666544433 2 23566666642 477
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
+++++++++.++ .+++. +..|+.. |+++ +|. + -+||-+..+.|||+++|
T Consensus 129 e~l~~~i~~~tk----lV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~ 204 (388)
T PRK08861 129 AALDAALAKKPK----LILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGH 204 (388)
T ss_pred HHHHHhcCcCCe----EEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCC
Confidence 888777765321 22221 2233332 2221 111 1 25899999999999999
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++++.... +. +++. .. +-...+...|..+ .|.+-+.-++++..++|..++
T Consensus 205 ~d~~gG~i~~~~~~~~~~-~~----~~~~---------~~----G~~~~p~~a~l~~--rgl~Tl~lR~~~~~~~a~~~a 264 (388)
T PRK08861 205 SDVIGGVLITKTKEHAEE-LA----WWGN---------CI----GATGTPFDSYMTL--RGIRTLGARMRVHEESAQQIL 264 (388)
T ss_pred CcceeEEEEecHHHHHHH-HH----HHHh---------cc----CCCCChHHHHHHH--hcCCCHHHHHHHHHHHHHHHH
Confidence 76 56666665432221 11 1110 00 1112234456554 488888899999999999999
Q ss_pred HHhccCCCcEEeCC------C-----------ceeEEEEEecC
Q psy852 675 GKVRRDPRFEISND------V-----------RLGLVCFRLRS 700 (891)
Q Consensus 675 ~~L~~~~~~eil~~------~-----------~~~iV~Fr~~~ 700 (891)
+.|+++|.++-+.- | -.++++|.+++
T Consensus 265 ~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 265 AYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 99999998764321 1 13699999974
No 319
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=97.75 E-value=0.0064 Score=69.81 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeC-CCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISN-DVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~-~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv 739 (891)
..++..+++++|.+.|++.....+.. ...-.++.|.+.+. +.....+.+.|.+.|+... + .+...+ +++
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~-----~~~~~~~~~~L~~~GV~v~-~---~~~~~lR~~p 379 (401)
T PRK00854 309 MIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPE-----AGGARQYCEALKERGLLAK-D---THDHTIRLAP 379 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecC-----chhHHHHHHHHHHCCeEEe-c---CCCCEEEEeC
Confidence 56677778899999998763221211 22344566665432 1234678888988998742 2 233567 999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~ 759 (891)
+..+|++|||++++.|++.+
T Consensus 380 ~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 380 PLVITREQVDWALEQIAKVL 399 (401)
T ss_pred CcccCHHHHHHHHHHHHHHh
Confidence 98999999999999998764
No 320
>PLN02452 phosphoserine transaminase
Probab=97.75 E-value=0.00021 Score=81.47 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=108.2
Q ss_pred cEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCccccccc-ccchHHHHHHHHHHHh-hHH
Q psy852 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS-GLQ 660 (891)
Q Consensus 583 DSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr-~~aL~lW~~L~~lG~~-G~~ 660 (891)
|-+..++||.++ |-|.|++++|++.. ...-...+.|+.-... ....+...+=+ +....+-.+|+.+-.+ |++
T Consensus 192 ~v~~~saqK~lG-P~Gl~~v~vr~~~l-~~~~~~~~~~~~~~~~----~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~ 265 (365)
T PLN02452 192 GVIYAGAQKNVG-PSGVTIVIIRKDLI-GNARPITPGMLDYKIH----AENDSLYNTPPCFGIYMCGLVFEDLLAQGGLK 265 (365)
T ss_pred CEEEEecccccC-CCCeEEEEEcHHHH-hhcccCCCchhhHHHH----HhcCCccCChhHHHHHHHHHHHHHHHHccCHH
Confidence 445579999885 99999999987742 1111112223211000 00000001111 2234556677777666 899
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEe-CCC--c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEIS-NDV--R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil-~~~--~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
.+.++..+++++|.+.|++.++|... .++ + ..+|+|++.+. + +.+++.+.+.+.|++-..+-.-.++ +
T Consensus 266 ~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~-----~-~~~~f~~~~~~~g~~~~~G~r~~gg--~ 337 (365)
T PLN02452 266 AMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS-----E-LEAEFVKEAAKAGMVQLKGHRSVGG--M 337 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc-----h-hHHHHHHHHHHCCCcccCCccccCc--e
Confidence 99999999999999999998877221 121 2 35899998754 2 7789999999999886555544444 6
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++-+.++.++|+++++.+++..
T Consensus 338 R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 338 RASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred EEECcCCCCHHHHHHHHHHHHHHH
Confidence 99888999999999999998764
No 321
>PRK07681 aspartate aminotransferase; Provisional
Probab=97.74 E-value=0.0076 Score=69.26 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=70.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++......+...|.+++.|++|+++ .+|+++|++.+.+. +-+|+++..+|.||.+-+ +++|+
T Consensus 119 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~~~~~~i~ 192 (399)
T PRK07681 119 IILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNFPGNPVPAMAHEDFFKEVI 192 (399)
T ss_pred EEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCcCcCCCHHHHHHHH
Confidence 36666677777777777788899999998653 67999999888543 346677777999999988 77888
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|++++++|-+|-+|+.
T Consensus 193 ~~a~~~~~~iI~De~y~~ 210 (399)
T PRK07681 193 AFAKKHNIIVVHDFAYAE 210 (399)
T ss_pred HHHHHcCeEEEEeccchh
Confidence 899999999999999954
No 322
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=97.74 E-value=0.0045 Score=70.81 Aligned_cols=252 Identities=11% Similarity=0.013 Sum_probs=138.3
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+...+. +|+ +++|+++++..++.+. .+ +.-.|+++.-........+...|+++
T Consensus 94 ~ia~~~~~~~~-~I~--~t~Ga~~~i~~~~~~~----~~---------------~gd~Vlv~~P~y~~y~~~~~~~g~~~ 151 (380)
T PLN03026 94 ALAEDSGLESE-NIL--VGCGADELIDLLMRCV----LD---------------PGDKIIDCPPTFGMYVFDAAVNGAEV 151 (380)
T ss_pred HHHHHhCcChh-hEE--EcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHHHHHHHcCCEE
Confidence 33444433333 455 6889999887765442 10 11135555555555556667789999
Q ss_pred EEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccchh----hh--------hcC--------------CCC
Q psy852 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTSCY----RK--------SQG--------------IEY 581 (891)
Q Consensus 531 ~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~c~----~~--------ldG--------------i~~ 581 (891)
+.+|.++++.+|+++|++++... +...++++ +-.|+..-. +. +|. ++.
T Consensus 152 ~~v~~~~~~~~d~~~l~~~~~~~---~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~~~vi~DeaY~~~~~~~~~~~~~~~ 228 (380)
T PLN03026 152 IKVPRTPDFSLDVPRIVEAVETH---KPKLLFLTSPNNPDGSIISDDDLLKILELPILVVLDEAYIEFSTQESRMKWVKK 228 (380)
T ss_pred EEeecCCCCCcCHHHHHHHHhcc---CCcEEEEeCCCCCCCCCCCHHHHHHHHhcCCEEEEECcchhhcCCcchHHHHHh
Confidence 99999888999999999988421 11223333 234554410 00 010 000
Q ss_pred --ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 582 --ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 582 --aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
-.-+.-+..|.++.| .-+|+++.. ++.+......... +. ...+.+.++...+....
T Consensus 229 ~~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~--------------~~------~~~~~q~aa~~aL~~~~ 287 (380)
T PLN03026 229 YDNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQP--------------YN------VSVAAEVAACAALSNPK 287 (380)
T ss_pred CCCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCC--------------CC------CCHHHHHHHHHHhhCHH
Confidence 012234455655433 234444432 1111111000000 11 12233444444443222
Q ss_pred -HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 659 -LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 659 -~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
+++..++..+.++++.+.|++++.+++ .+...+.+.+++.+. ....++.+.|.+.|+.+..++.......+
T Consensus 288 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lR 360 (380)
T PLN03026 288 YLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSG------RDAKKLKEDLAKMGVMVRHYNSKELKGYIR 360 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCC------CCHHHHHHHHHHCCeEEEECCCCCCCCEEE
Confidence 455566667788889999988766654 455677888887531 13467888888899875443332234466
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei 758 (891)
++++ +.+++++++++|+++
T Consensus 361 is~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 361 VSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred EecC---CHHHHHHHHHHHHHh
Confidence 8887 678999999998753
No 323
>PRK07908 hypothetical protein; Provisional
Probab=97.74 E-value=0.002 Score=72.56 Aligned_cols=233 Identities=10% Similarity=0.039 Sum_probs=134.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|.|+++++..++. .. . ++ +++ ..-+-......+...|++++.+|.|+++.+|
T Consensus 77 ~I~--it~Ga~~al~~~~~-----l~-~--------------~~-viv-~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d 132 (349)
T PRK07908 77 EVL--LLAGAAEGFALLAR-----LR-P--------------RR-AAV-VHPSFTEPEAALRAAGIPVHRVVLDPPFRLD 132 (349)
T ss_pred hEE--ECCCHHHHHHHHHh-----cC-C--------------Ce-EEE-eCCCChHHHHHHHHcCCEEEeeccCcccCcC
Confidence 666 78899998775543 11 0 11 222 2222233345566789999999998878899
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh------------hhcC-------CCCccEEEE-cCcc
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR------------KSQG-------IEYADSFNV-NVNK 591 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~------------~ldG-------i~~aDSIs~-d~HK 591 (891)
++++++ . ...++++ +-.|++. |.+ .+.+ ...-+.|.+ +++|
T Consensus 133 ~~~l~~----~----~~~i~l~np~NPTG~~~~~~~l~~l~~~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK 204 (349)
T PRK07908 133 PAAVPD----D----ADLVVIGNPTNPTSVLHPAEQLLALRRPGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTK 204 (349)
T ss_pred hhHhcc----C----CCEEEEcCCCCCCCCCcCHHHHHHHHhcCCEEEEECcchhhccCCccccccccCCCEEEEeeccc
Confidence 986532 1 1122222 3345554 211 1111 112256777 7899
Q ss_pred cCC-cccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHH
Q psy852 592 WLL-TAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669 (891)
Q Consensus 592 ~L~-~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~l 669 (891)
.++ ...-+|+++... +.+ +.+. ....| ... +-...++..| ++..+..-+++..++..++
T Consensus 205 ~~~l~GlRiG~~~~~~-~~~-~~~~~~~~~~--------------~~~-~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 265 (349)
T PRK07908 205 TWSLAGLRVGYALGAP-DVL-ARLTRGRAHW--------------PVG-TLQLEAIAAC--CAPRAVAEAAADAARLAAD 265 (349)
T ss_pred ccCCccceeeeeecCH-HHH-HHHHhcCCCC--------------Ccc-HHHHHHHHHH--hcccchHHHHHHHHHHHHH
Confidence 776 345688888643 222 2221 11111 000 0011112212 1111223455666777888
Q ss_pred HHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CCeEE-EEecCCCCHH
Q psy852 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QNDEV-FELQERKRKD 746 (891)
Q Consensus 670 A~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~~~l-~sv~~~tT~e 746 (891)
++++.+.|++. ++++..++..+.+++++++ ...+.+.|.+.|+.+..+.... +...+ ++++ +.+
T Consensus 266 r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~---------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~---~~~ 332 (349)
T PRK07908 266 RAEMVAGLRAV-GARVVDPAAAPFVLVRVPD---------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR---PRA 332 (349)
T ss_pred HHHHHHHHHhC-CcEeccCCCceEEEEECCc---------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC---CCc
Confidence 88999999887 7887776777888888752 3567778888898765544332 24566 8885 678
Q ss_pred HHHHHHHHHHHHH
Q psy852 747 DLAYKRSFFVRML 759 (891)
Q Consensus 747 dId~li~~L~ei~ 759 (891)
++++++++|+++.
T Consensus 333 ~~~~l~~al~~~~ 345 (349)
T PRK07908 333 EVPVLVQALAEIL 345 (349)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998775
No 324
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0014 Score=72.96 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=57.1
Q ss_pred HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeecccc
Q psy852 156 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 156 ~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~G 235 (891)
..++.-.|+++++|+.+ |++.++++|+++++ .+.+=|.| |.-+.|-|++.|+++|+++|+++.||-+++
T Consensus 119 ~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~~nTk-----avf~Etig-NP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 119 SHTLKRLGIEVRFVDPD-----DPENFEAAIDENTK-----AVFAETIG-NPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred HHHHHhcCcEEEEeCCC-----CHHHHHHHhCcccc-----eEEEEecc-CCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 33444567899998754 48999999999875 45556666 667899999999999999999999999996
Q ss_pred CC
Q psy852 236 GS 237 (891)
Q Consensus 236 G~ 237 (891)
..
T Consensus 188 tp 189 (426)
T COG2873 188 TP 189 (426)
T ss_pred cc
Confidence 54
No 325
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=97.73 E-value=0.0015 Score=75.07 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=116.0
Q ss_pred EEecCCCChHHHHHHH----HcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~----~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++...-....+-+. -.++++.+++. -|+++|++++++.+ .+|.+-..+|.+.-+-||++|+++
T Consensus 97 iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-----~d~~~l~~~l~~~t------~~v~~EspsNP~l~v~Dl~~i~~~ 165 (386)
T PF01053_consen 97 IVASDDLYGGTYRLLEELLPRFGVEVTFVDP-----TDLEALEAALRPNT------KLVFLESPSNPTLEVPDLEAIAKL 165 (386)
T ss_dssp EEEESSSSHHHHHHHHHCHHHTTSEEEEEST-----TSHHHHHHHHCTTE------EEEEEESSBTTTTB---HHHHHHH
T ss_pred eEecCCccCcchhhhhhhhcccCcEEEEeCc-----hhHHHHHhhccccc------eEEEEEcCCCcccccccHHHHHHH
Confidence 6666554444443332 25778888754 47899999998854 477888888899999999999999
Q ss_pred HHHcC-CceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchh
Q psy852 221 AKEFD-VWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEG 299 (891)
Q Consensus 221 ~~~~~-~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (891)
|+++| +++.||.+|+..+.+ +|.
T Consensus 166 a~~~g~~~~vVDnT~atp~~~-------------------~pL------------------------------------- 189 (386)
T PF01053_consen 166 AKEHGDILVVVDNTFATPYNQ-------------------NPL------------------------------------- 189 (386)
T ss_dssp HHHTTT-EEEEECTTTHTTTC--------------------GG-------------------------------------
T ss_pred HHHhCCceEEeeccccceeee-------------------ccC-------------------------------------
Confidence 99998 999999999543321 110
Q ss_pred hHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccC--C
Q psy852 300 VLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAF--D 377 (891)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~--~ 377 (891)
- ..||-+.-+.-|++.+.- -
T Consensus 190 -------------------------------------------------------~---~GaDivv~S~TKyl~Ghsdv~ 211 (386)
T PF01053_consen 190 -------------------------------------------------------E---LGADIVVHSATKYLSGHSDVM 211 (386)
T ss_dssp -------------------------------------------------------G---GT-SEEEEETTTTTTTSSSE-
T ss_pred -------------------------------------------------------c---CCceEEEeeccccccCCccee
Confidence 0 037899999999876543 3
Q ss_pred ceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCChhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhc
Q psy852 378 SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVR 457 (891)
Q Consensus 378 ~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~ 457 (891)
.|++.+++...+...+......+. -...+...|..++ |..-+.-++++..++|..+++.|+
T Consensus 212 ~G~vv~~~~~~~~~~l~~~~~~~G-----------------~~~~p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~ 272 (386)
T PF01053_consen 212 GGAVVVNGSSELYDRLREFRRLLG-----------------ATLSPFDAWLLLR--GLRTLPLRMERQNENAEALAEFLE 272 (386)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHT------------------B--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECchhhhhhhhcchhhhcC-----------------ccchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 688887764333322211100000 0124567787776 788899999999999999999999
Q ss_pred cCCccc
Q psy852 458 RDPRFE 463 (891)
Q Consensus 458 ~~~~~e 463 (891)
++|.++
T Consensus 273 ~hp~V~ 278 (386)
T PF01053_consen 273 EHPKVK 278 (386)
T ss_dssp TSTTEE
T ss_pred hCCCCC
Confidence 999876
No 326
>PRK05942 aspartate aminotransferase; Provisional
Probab=97.73 E-value=0.00059 Score=78.22 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=70.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-++.....++...|.+++.|++|.+ +.+|+++|++.+.+. +-+|.++.-+|.||.+-+ +++|+
T Consensus 123 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~ 196 (394)
T PRK05942 123 VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIV 196 (394)
T ss_pred EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHH
Confidence 3777777777777667667789999998753 469999999988643 346666667999999988 78889
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++.+|.+|+.+
T Consensus 197 ~~a~~~~~~iI~De~y~~~ 215 (394)
T PRK05942 197 AFARKYEIMLVHDLCYAEL 215 (394)
T ss_pred HHHHHcCeEEEEeccchhh
Confidence 9999999999999999543
No 327
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=97.73 E-value=0.0053 Score=75.04 Aligned_cols=253 Identities=14% Similarity=0.125 Sum_probs=148.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--C---CCcCH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--K---NSLRG 543 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~---G~mD~ 543 (891)
+.|.|-+|.+++.++-. +.-.|++...+|-|+..++.+.|...+.+++.. . |.+++
T Consensus 217 vNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~ 277 (713)
T PRK15399 217 TNGTSTSNKIVGMYAAP-------------------AGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPR 277 (713)
T ss_pred eCChHHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCCCCh
Confidence 34667788887776421 223589999999999999999999988887642 2 34566
Q ss_pred -----HHHHHHHHhhhhcCCccEEEEecCCccc--hh------------h-h--------------------hcCCCCcc
Q psy852 544 -----ATLRQVMQQDETMGYIPFFVSTTLGTTS--CY------------R-K--------------------SQGIEYAD 583 (891)
Q Consensus 544 -----~~Le~aI~~d~~~g~ip~~VvataGTT~--c~------------~-~--------------------ldGi~~aD 583 (891)
+.++++|++.... ..|..++.|..|.. |. - + +.+...+|
T Consensus 278 ~~~~~e~I~~~i~~~p~~-~~p~~vvit~pTYdGi~yd~~~I~~~~g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD 356 (713)
T PRK15399 278 REFTRDSIEEKVAATTQA-QWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPG 356 (713)
T ss_pred hhccHHHHHHHHHhCCCc-CCceEEEEECCCCCceeeCHHHHHHHhCCCEEEEeccchhhhhcCcccCCcChhhCCCCCC
Confidence 9999999875432 34566777666655 10 0 1 11222478
Q ss_pred EE---EEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 584 SF---NVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 584 SI---s~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.. +-|.||.|.+--.++.+.++.... .+. .+..|+-+.+. .|. +.+ +.+|-....+. -|..| +
T Consensus 357 ~~i~~tQStHKtL~alTQaS~iHvk~~vd-~~~--~n~a~~m~~ST-SPs---Y~L-----mASLD~a~~~m-~~~~G-~ 422 (713)
T PRK15399 357 KVIFETQSTHKMLAAFSQASLIHIKGEYD-EET--FNEAFMMHTST-SPS---YPI-----VASVETAAAML-RGNPG-K 422 (713)
T ss_pred eeeeeeeehhccccccchheeeeecCCCC-HHH--HHHHHHHHcCC-CcH---HHH-----HHHHHHHHHHH-Hhhhh-H
Confidence 77 999999999999999998876411 111 11122211110 000 000 11122111111 11122 4
Q ss_pred HHHHHHHHHHHHHHHHhccCCC------cEEeCCC-----------------------------ceeEEEEEecCCcc--
Q psy852 661 KYIRRHCELAKLFEGKVRRDPR------FEISNDV-----------------------------RLGLVCFRLRSENN-- 703 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~------~eil~~~-----------------------------~~~iV~Fr~~~~~~-- 703 (891)
+.+++.++++..|.++|.++.+ |+++.+. +..-+.+..++.+.
T Consensus 423 ~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g 502 (713)
T PRK15399 423 RLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQG 502 (713)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCccccc
Confidence 4666777777778877777655 5666431 11222222221110
Q ss_pred --hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 704 --LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 704 --~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++..--...+.+.|.+.|+. ....+.+.+ +.++...|++++++++++|.++-
T Consensus 503 ~~~~~Gi~g~~l~~~L~e~gI~----~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~ 557 (713)
T PRK15399 503 NMSEEGIPAALVAKFLDERGIV----VEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFK 557 (713)
T ss_pred ccccCCCCHHHHHHHHHHcCCE----EEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 01112234666778888987 555555556 77888899999999999998764
No 328
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=97.72 E-value=0.0026 Score=71.92 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred HHHHHHHcCCeEEEEecCCCC--cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHHHHHHcCCcee
Q psy852 155 VEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGPVAKEFDVWLH 229 (891)
Q Consensus 155 v~kaa~~~~~~v~~V~~d~~g--~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~i~~~~~~~lH 229 (891)
....+...|.+++.++.+++. .+| +++++.+.+. +-+|+++..+|.||.+-+ +++|+++|++++++|-
T Consensus 107 ~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~------~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 107 YRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPD------LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred HHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCC------CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 344556778899999987543 444 3454544322 236667888999999988 8889999999999999
Q ss_pred eeccccC
Q psy852 230 VDGAYAG 236 (891)
Q Consensus 230 vDaA~GG 236 (891)
+|.+|..
T Consensus 180 ~De~y~~ 186 (356)
T PRK08056 180 LDEAFID 186 (356)
T ss_pred Eecchhc
Confidence 9999944
No 329
>PLN02187 rooty/superroot1
Probab=97.72 E-value=0.007 Score=71.25 Aligned_cols=86 Identities=7% Similarity=0.146 Sum_probs=66.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-+.+.....+...|.+++.++.. +++.+|+++|++.+++. +.+|+++.-+|.||.+-+ +++|++
T Consensus 158 Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~ 231 (462)
T PLN02187 158 ILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAE 231 (462)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 5555555555555566677799988874 46789999999887543 346677778899999876 788889
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|.+|-+|+.
T Consensus 232 ~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 232 TARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHHCCCEEEEeccccc
Confidence 99999999999999944
No 330
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=97.72 E-value=0.0018 Score=73.19 Aligned_cols=235 Identities=11% Similarity=0.050 Sum_probs=133.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ ++.|+++++..++.+.-. .+.-.|++..-........+...|++++.+|.++++.+|
T Consensus 79 ~I~--it~Gs~~~i~~~~~~~~~------------------~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~ 138 (354)
T PRK04635 79 QIL--TSRGADEAIELLIRAFCE------------------PGQDSIACFGPTYGMYAISAETFNVGVKALPLTADYQLP 138 (354)
T ss_pred HEE--EeCCHHHHHHHHHHHhcC------------------CCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCC
Confidence 566 788999988876654210 011235555555566667778889999999998889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh---hhcCC--------CCcc--------EEEEcC
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR---KSQGI--------EYAD--------SFNVNV 589 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~---~ldGi--------~~aD--------SIs~d~ 589 (891)
++.+++ +. +...++++ +-.|+.. |.+ -+|.. ...+ -+.-++
T Consensus 139 ~~~l~~-~~-----~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~ 212 (354)
T PRK04635 139 LDYIEQ-LD-----GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL 212 (354)
T ss_pred HHHHHh-cc-----CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence 999873 32 11223333 2345554 111 01110 0001 134478
Q ss_pred cccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHhhHHHHHHH
Q psy852 590 NKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLSGLQKYIRR 665 (891)
Q Consensus 590 HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~G~~~~i~~ 665 (891)
+|+++ ...-+|+++..++ .+.........| +. + ...+..++..+ |.+.+++.++.
T Consensus 213 SK~~~l~GlRlG~~i~~~~-~~~~l~~~~~~~--------------~~--~----~~~~~~a~~~l~~~~~~~~~~~~~~ 271 (354)
T PRK04635 213 SKAFALAGARCGFTLANEE-LIEILMRVIAPY--------------PV--P----LPVSEIATQALSEAGLARMKFQVLD 271 (354)
T ss_pred HHHhhhhHHHHhhhhCCHH-HHHHHHhhcCCC--------------CC--C----HHHHHHHHHHHhcccHHHHHHHHHH
Confidence 89876 3355777766432 222111111111 11 1 11222233333 33445556666
Q ss_pred HHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCC
Q psy852 666 HCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKR 744 (891)
Q Consensus 666 ~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT 744 (891)
..+.++++.+.|++.+++++. ++..+.+.++++ ....+.+.|.+.|+.+...........+ ++++ +
T Consensus 272 ~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~---------~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~---~ 338 (354)
T PRK04635 272 LNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFD---------DVDAVFKALWDAGIVARAYKDPRLANCIRFSFS---N 338 (354)
T ss_pred HHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECC---------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---C
Confidence 777788999999988777765 445555556653 1346777888889875433222223456 8875 7
Q ss_pred HHHHHHHHHHHHH
Q psy852 745 KDDLAYKRSFFVR 757 (891)
Q Consensus 745 ~edId~li~~L~e 757 (891)
.+|+++++++|++
T Consensus 339 ~e~~~~l~~al~~ 351 (354)
T PRK04635 339 RAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999975
No 331
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=97.70 E-value=0.00024 Score=78.32 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC------CCcC
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK------NSLR 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~------G~mD 542 (891)
++|+|++|..++.+.-. +.-.|+++..+|.|+..++.+.|.+++.++++.+ +.+|
T Consensus 81 ~~Gst~a~~~~l~al~~-------------------~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~ 141 (294)
T cd00615 81 VNGTSSSNKAVILAVCG-------------------PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIP 141 (294)
T ss_pred cCcHHHHHHHHHHHcCC-------------------CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCC
Confidence 56778888877665311 2235888899999999999988998888877432 4799
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe--cCCccc--------hhhh-----hcC-----------------CCCccEEEEcCc
Q psy852 543 GATLRQVMQQDETMGYIPFFVST--TLGTTS--------CYRK-----SQG-----------------IEYADSFNVNVN 590 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva--taGTT~--------c~~~-----ldG-----------------i~~aDSIs~d~H 590 (891)
+++|++++++... ...++++. ..|+.. |+++ +|+ ...+|.+..++|
T Consensus 142 ~~~l~~~l~~~~~--~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~h 219 (294)
T cd00615 142 PETFKKALIEHPD--AKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTH 219 (294)
T ss_pred HHHHHHHHHhCCC--ceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchh
Confidence 9999999976321 11222221 134433 4331 221 135899999999
Q ss_pred ccCCcccccEEEEEeCC
Q psy852 591 KWLLTAFDSSCLWVADR 607 (891)
Q Consensus 591 K~L~~P~g~G~llvR~~ 607 (891)
|++.+|-++|++++++.
T Consensus 220 K~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 220 KTLPALTQGSMIHVKGD 236 (294)
T ss_pred cccchHhHHHHHHhCCC
Confidence 99998888888888765
No 332
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=97.70 E-value=0.0044 Score=69.71 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=139.4
Q ss_pred EEEecccchHHHHHHHHHcCceEEEecCC--CCCCcCHHHHHHHHHhhhhcCC-ccEEEEec----CCccc---------
Q psy852 508 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGY-IPFFVSTT----LGTTS--------- 571 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~mD~~~Le~aI~~d~~~g~-ip~~Vvat----aGTT~--------- 571 (891)
.|++..-.|......+...|.+++.+|.+ .++.+|+++|++.+++...++. ..++++.+ .|++.
T Consensus 95 ~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~ 174 (363)
T PF00155_consen 95 TVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELA 174 (363)
T ss_dssp EEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHH
T ss_pred cceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchh
Confidence 58888899999999999999999999864 7899999999999999766553 33444333 34433
Q ss_pred --hhhh-------------hcC----------C-CCc-cEEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccc
Q psy852 572 --CYRK-------------SQG----------I-EYA-DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQ 622 (891)
Q Consensus 572 --c~~~-------------ldG----------i-~~a-DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~ 622 (891)
|.++ ..+ + ... .-+.-+..|.++.| .-.|++++ ++.... .+. ....+
T Consensus 175 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~-~l~~~~~~~-- 250 (363)
T PF00155_consen 175 ELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIE-RLRRFQRSG-- 250 (363)
T ss_dssp HHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHH-HHHHHHHHT--
T ss_pred hhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccc-hhhhhh-hhhhccccc--
Confidence 2220 001 1 112 25777899988877 56888888 443222 211 11011
Q ss_pred cCCCCCccccCCcccccccccchHHHH---HHHHHHH--hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEE
Q psy852 623 HGHEGAIDYRHWGIPLSRRFRSLKLWF---VIRTYGL--SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFR 697 (891)
Q Consensus 623 ~~~e~~~~~~~~ti~~SRr~~aL~lW~---~L~~lG~--~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr 697 (891)
. . .++.+.+ .+...+. +-+++..++..++++++.+.|++. ++.+..++ .+.+++.
T Consensus 251 ------------~---~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~ 310 (363)
T PF00155_consen 251 ------------L---S---SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWV 310 (363)
T ss_dssp ------------T---S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEE
T ss_pred ------------c---c---cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEE
Confidence 0 0 1122222 2222232 256777778888999999999887 88887655 5555444
Q ss_pred ecCCcchhhhhhHHHHHHHHHhC-CcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 698 LRSENNLIADQNNRKLLEDINAS-GRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~~-G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
..+. ....++.+.|.++ |+....+........+ +++ ...++++++++++.|
T Consensus 311 ~~~~------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 311 RLDP------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp EESH------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred Eccc------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 3221 1467888899887 9886655443336667 998 677999999999765
No 333
>PRK08114 cystathionine beta-lyase; Provisional
Probab=97.69 E-value=0.0015 Score=75.31 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=97.3
Q ss_pred EEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhh--------------------------cC
Q psy852 508 MAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDET--------------------------MG 557 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~--------------------------~g 557 (891)
.|+++...|.+....+. -.|++++.++. .|++.++++|+++++ .|
T Consensus 103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g 177 (395)
T PRK08114 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVN 177 (395)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhC
Confidence 47777778877766653 24777777764 356667776654321 11
Q ss_pred -CccEEEEecCCccchhhhhcCCCCccEEEEcCcccCCcc--cccEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 558 -YIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTA--FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 558 -~ip~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P--~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
.++++|.+|.++....+ ... -+||.+..+.|||+++| ...|+++.+ ++.... +... .+ ..
T Consensus 178 ~g~~lvVDnT~a~p~~~~-pl~-~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~-l~~~-~~------------~~ 240 (395)
T PRK08114 178 PDAVIMIDNTWAAGVLFK-ALD-FGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQ-LREN-SY------------LM 240 (395)
T ss_pred CCCEEEEECCCccccccC-HHH-cCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHH-HHHH-HH------------hc
Confidence 12223333322221110 000 24999999999999999 477866543 322111 1100 00 00
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-C-----C-----------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-D-----V-----------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~-----~-----------~~~iV~Fr 697 (891)
+--..+...|..++ |.+-+.-++++..++|..+++.|+++|.++-+. | | -.++++|.
T Consensus 241 ----G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~ 314 (395)
T PRK08114 241 ----GQMVDADTAYMTSR--GLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFV 314 (395)
T ss_pred ----cCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 11233455665544 778888899999999999999999999876332 1 1 13699999
Q ss_pred ecC
Q psy852 698 LRS 700 (891)
Q Consensus 698 ~~~ 700 (891)
+++
T Consensus 315 l~~ 317 (395)
T PRK08114 315 LKK 317 (395)
T ss_pred ecC
Confidence 974
No 334
>PRK07682 hypothetical protein; Validated
Probab=97.68 E-value=0.0028 Score=72.12 Aligned_cols=244 Identities=9% Similarity=0.031 Sum_probs=137.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|+|+++++..++.+. .+ +.-.|++..-.+......+.+.|.+++.+|.+ +++.
T Consensus 83 ~i~--~t~G~~~al~~~~~~l----~~---------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 141 (378)
T PRK07682 83 EII--VTVGASQALDVAMRAI----IN---------------PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFK 141 (378)
T ss_pred cEE--EeCChHHHHHHHHHHh----CC---------------CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCC
Confidence 455 6888898887765442 10 11246667777777777778888888888875 3578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C----------CCCc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G----------IEYA 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G----------i~~a 582 (891)
+|+++|++++.+.. ..++++ +..|++. |.++ .| + ...-
T Consensus 142 ~d~~~l~~~~~~~~----~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 217 (378)
T PRK07682 142 VQPAQIEAAITAKT----KAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRER 217 (378)
T ss_pred CCHHHHHhhcCccc----EEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCC
Confidence 99999999886531 222232 3456553 3221 01 1 0011
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
.-+.-+..|.++.| .-+|+++..++ +.+.+.....|. .+ ....+.+.++...+ |...+
T Consensus 218 ~i~~~S~SK~~~~~GlR~G~~~~~~~--~i~~l~~~~~~~-----------~~------~~~~~~q~a~~~~l~~~~~~~ 278 (378)
T PRK07682 218 TILISGFSKGFAMTGWRLGFIAAPVY--FSEAMLKIHQYS-----------MM------CAPTMAQFAALEALRAGNDDV 278 (378)
T ss_pred EEEEecCcccccChhhhhhhhhcCHH--HHHHHHHHHHhh-----------cc------CCCHHHHHHHHHHHhCChHHH
Confidence 22344567877654 33677765332 222211000000 00 01123344444444 22335
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeE-EEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeE
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGL-VCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~i-V~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~ 735 (891)
++..++..+.++++.+.|++. ++++.. |+.+. ++..+.+. +....++.+.|. +.|+.+..+... .+...
T Consensus 279 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~-p~g~~~~~~~~~~~-----~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~ 351 (378)
T PRK07682 279 IRMRDSYRKRRNFFVTSFNEI-GLTCHV-PGGAFYAFPSISST-----GLSSEEFAEQLLLEEKVAVVPGSVFGESGEGF 351 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCccCC-CCeeEEEEEeccCC-----CCCHHHHHHHHHHhCCEEEcCchhhCcCCCCe
Confidence 666667778888899999886 666543 44443 33334322 113457787765 678875544432 23456
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ ++++. +.+++++.++.|+++.
T Consensus 352 iRis~~~--~~~~l~~~l~~l~~~l 374 (378)
T PRK07682 352 IRCSYAT--SLEQLQEAMKRMKRFV 374 (378)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHH
Confidence 6 88874 5889999998888765
No 335
>PRK07777 aminotransferase; Validated
Probab=97.68 E-value=0.0023 Score=73.01 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=136.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC---C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK---N 539 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~---G 539 (891)
+|+ +|+|+++++..++.+. .. +.-.|++..-.|.....++.+.|.+++.+|.+++ +
T Consensus 87 ~i~--~t~G~~~al~~~~~~~----~~---------------~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 145 (387)
T PRK07777 87 EVL--VTVGATEAIAAAVLGL----VE---------------PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGF 145 (387)
T ss_pred cEE--EeCCcHHHHHHHHHHh----cC---------------CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCC
Confidence 355 6889999987665432 11 1124666666777777788888889999998654 5
Q ss_pred CcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C-----------CC
Q psy852 540 SLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G-----------IE 580 (891)
Q Consensus 540 ~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G-----------i~ 580 (891)
.+|+++|++++.+.. ..++++ +..|++. |.++ +| + ..
T Consensus 146 ~~d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 221 (387)
T PRK07777 146 ALDLDALRAAVTPRT----RALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMR 221 (387)
T ss_pred cCCHHHHHHhcCccc----EEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCc
Confidence 699999999886531 122332 3356543 3221 11 1 11
Q ss_pred CccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh
Q psy852 581 YADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS 657 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~ 657 (891)
..+-+..+++|.++.| .-+|+++...+ +.+.+.....|.. +. .+.. .+..+...+ +..
T Consensus 222 ~~~i~~~S~SK~~g~~GlRiG~~~~~~~--l~~~~~~~~~~~~-----------~~--~~~~----~q~~~~~~l~~~~~ 282 (387)
T PRK07777 222 ERTVTISSAAKTFNVTGWKIGWACGPAP--LIAAVRAAKQYLT-----------YV--GGAP----FQPAVAHALDHEDA 282 (387)
T ss_pred CcEEEEeechhhccCcCceeEEEecCHH--HHHHHHHHHhhcc-----------cC--CCCH----HHHHHHHHHhCCcH
Confidence 1344567799998867 33787765432 2222211111110 00 0111 111111112 223
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc-----
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE----- 731 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~----- 731 (891)
-+.+..+...+.++++.+.|++. ++++..+.....+++++++.+ ......+.+.|. +.|+.+..+....
T Consensus 283 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~ 357 (387)
T PRK07777 283 WVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPLG----YDDGTEFCRALPERVGVAAIPMSVFYDPADA 357 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEecccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCcC
Confidence 34455566677888888888875 566554433345555654321 113467888886 4688755443221
Q ss_pred CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 732 QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 732 g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+...+ ++++. .++++++.++.|.++.
T Consensus 358 ~~~~~Ri~~~~--~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 358 WNHLVRFAFCK--RDDTLDEAIRRLRALR 384 (387)
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 12356 87763 6889999988887654
No 336
>PRK15029 arginine decarboxylase; Provisional
Probab=97.68 E-value=0.0042 Score=76.63 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CC---CCcC-
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DK---NSLR- 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~---G~mD- 542 (891)
+.|+|-+|..++.++-. +.-.|++...+|-|+..++.+.|...+.+++. +. |.++
T Consensus 227 vNGST~gn~a~i~a~~~-------------------~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~ 287 (755)
T PRK15029 227 VVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYP 287 (755)
T ss_pred eCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCc
Confidence 34667777766655321 22259999999999999999999988888653 22 4455
Q ss_pred ----HHHHHHHHHhhhh----cCCccEEEEecCCccc------------hhh-------------h------h---cCC-
Q psy852 543 ----GATLRQVMQQDET----MGYIPFFVSTTLGTTS------------CYR-------------K------S---QGI- 579 (891)
Q Consensus 543 ----~~~Le~aI~~d~~----~g~ip~~VvataGTT~------------c~~-------------~------l---dGi- 579 (891)
++.++++|++... .+..|..|+.|.-|.. |++ | + .++
T Consensus 288 ~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~ 367 (755)
T PRK15029 288 QEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMR 367 (755)
T ss_pred cccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCcccccccccc
Confidence 9999999976421 2234556666554443 221 1 1 223
Q ss_pred ------CCcc-EEEEcCcccCCcccccEEEEEeCC
Q psy852 580 ------EYAD-SFNVNVNKWLLTAFDSSCLWVADR 607 (891)
Q Consensus 580 ------~~aD-SIs~d~HK~L~~P~g~G~llvR~~ 607 (891)
.+|| .++-|.||.|.+--.++++.+++.
T Consensus 368 ~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 368 GEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred ccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 4588 888999999999999999999765
No 337
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=97.68 E-value=0.0051 Score=70.56 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
|+++|++.+.+. +.+|++.-..+.+|.+-| +++|.++|++||+++++|-++.|+.
T Consensus 172 d~~~l~~~~~~~------~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 230 (398)
T PRK03244 172 DVDALAAAVDDD------TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIG 230 (398)
T ss_pred CHHHHHHhhcCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 789998877422 345666666889999987 9999999999999999999997643
No 338
>PRK07324 transaminase; Validated
Probab=97.67 E-value=0.00039 Score=79.24 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=71.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|+++.-++.+....+...|.+++.++++.+ ..+|+++|++.+... +-+|+++..+|.||.+-+ +++|++
T Consensus 107 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~ 180 (373)
T PRK07324 107 VISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVE 180 (373)
T ss_pred EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 666666777777777777789999999754 458999998877543 347788899999999988 899999
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|+++|+++++|.+|.++
T Consensus 181 ~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 181 IARSVDAYVLSDEVYRPL 198 (373)
T ss_pred HHHHCCCEEEEEcccccc
Confidence 999999999999999653
No 339
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=97.65 E-value=0.0036 Score=71.60 Aligned_cols=290 Identities=12% Similarity=0.041 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEeccc
Q psy852 435 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKE 514 (891)
Q Consensus 435 ~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~ 514 (891)
...|.++.++..+.-+++.+. . ++.+++- ++++||.+.=.++.- ..++ .+..+++++.-
T Consensus 34 s~~F~~i~~e~~~~L~~l~~~-~--~~~~v~~-l~GsGT~a~Eaa~~n----l~~~-------------~g~~vLv~g~F 92 (374)
T TIGR01365 34 SKLGKEKLAEAIKKTREMLGV-P--ADYLIGI-VPASDTGAVEMALWS----MLGC-------------RGVDVLAWESF 92 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCC-C--CCcEEEE-ECCchHHHHHHHHHH----cCCC-------------CCCeEEEECHH
Confidence 456677777777777666552 1 2344442 466776443322221 1110 01124444433
Q ss_pred chHHHHHHHHHcCc-eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec--CCccc-----hhh------hhcC--
Q psy852 515 AHSCVEKAAMMAFV-RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT--LGTTS-----CYR------KSQG-- 578 (891)
Q Consensus 515 aH~Sv~Kaa~l~gv-~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat--aGTT~-----c~~------~ldG-- 578 (891)
.+--..+.|...|+ ++..+..+..-.+|++.++. ++ . ..++-++ .|... +.. -+|+
T Consensus 93 G~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~~----~--v~~vhnETSTGv~npv~~i~~~~~~~lliVDavS 164 (374)
T TIGR01365 93 GKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--KN----D--VVFTWNGTTSGVRVPNGDFIPADREGLTICDATS 164 (374)
T ss_pred HHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--CC----C--EEEecCCCchheeccccccccccCCCcEEEEccc
Confidence 33333355665677 57888777667789999873 11 1 1122111 12221 111 1222
Q ss_pred --------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCC-----CccccCCCCCccccCCccccccccc-c
Q psy852 579 --------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDP-----LYLQHGHEGAIDYRHWGIPLSRRFR-S 644 (891)
Q Consensus 579 --------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~-----~Yl~~~~e~~~~~~~~ti~~SRr~~-a 644 (891)
++.+|-+..+.+|.+++|-|.|++.++++..-. .-.... .|+.-.....+.. ... ...-++- +
T Consensus 165 s~g~~~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~-~~~~~~y~~~~~~~~~~~~~~~~~-~~~-~~~t~~TP~ 241 (374)
T TIGR01365 165 AAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVAR-LESYTPAWPLPKIFRLTKGGKLNK-KIF-EGSTINTPS 241 (374)
T ss_pred hhcCCCCChhHCcEEEEechhccCCCCceEEEEECHHHHHH-HhhcCCCCCChhhhccccccchhh-hhh-cCCCCCChH
Confidence 234899999999999999999999999875321 111011 1221100000000 000 0000111 1
Q ss_pred -hHHHHHHHHH---HHh-hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-C--c-eeEEEEEecCCcch----hhhh-hH
Q psy852 645 -LKLWFVIRTY---GLS-GLQKYIRRHCELAKLFEGKVRRDPRFEISND-V--R-LGLVCFRLRSENNL----IADQ-NN 710 (891)
Q Consensus 645 -L~lW~~L~~l---G~~-G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~--~-~~iV~Fr~~~~~~~----~~d~-ln 710 (891)
..++..++.+ -.+ |++++++++.++++.+.+.+++.+.++++.+ + . ..+++|++.+.+-. +.+. ..
T Consensus 242 v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~ 321 (374)
T TIGR01365 242 MLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFA 321 (374)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHH
Confidence 2334443333 354 8999999999999999999999876777753 2 2 34677887432110 1011 14
Q ss_pred HHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHH
Q psy852 711 RKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFV 756 (891)
Q Consensus 711 ~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ 756 (891)
.++.+.|.++|+.+-.+.......++ |......+.+||+.+++.|.
T Consensus 322 ~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 322 KELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred HHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 67888888889753322222222445 77667889999999999886
No 340
>PTZ00377 alanine aminotransferase; Provisional
Probab=97.64 E-value=0.0013 Score=77.75 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=74.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.+....+...|.+++.|+++++ +.+|+++|++.+.+..+++..+-+|+++.-+|.||.+-+ +++|+
T Consensus 165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~ 244 (481)
T PTZ00377 165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244 (481)
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHH
Confidence 3777777788887777777889999998753 479999999999865444434555555567899999988 88899
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|++++++|.+|-+|+.
T Consensus 245 ~~a~~~~~~iI~De~Y~~ 262 (481)
T PTZ00377 245 KFCYEKGIVLMADEVYQE 262 (481)
T ss_pred HHHHHCCCEEEEehhhHh
Confidence 999999999999999953
No 341
>PRK06836 aspartate aminotransferase; Provisional
Probab=97.64 E-value=0.00085 Score=76.97 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=69.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
.|+++.-++......+...+.+++.+++|++ +.+|+++|++.+++. +-+|+++..+|.+|.+-| +++|++
T Consensus 122 ~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~ 195 (394)
T PRK06836 122 EVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPK------TKAVIINSPNNPTGVVYSEETLKALAA 195 (394)
T ss_pred EEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcC------ceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 3667777777776666666789999999876 789999999988654 346667778999999977 556666
Q ss_pred HHHH------cCCceeeeccccCC
Q psy852 220 VAKE------FDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~------~~~~lHvDaA~GG~ 237 (891)
+|++ +++++.+|.+|+.+
T Consensus 196 la~~~~~~~~~~~~ii~De~y~~~ 219 (394)
T PRK06836 196 LLEEKSKEYGRPIYLISDEPYREI 219 (394)
T ss_pred HHHHhhhccCCCeEEEEecccccc
Confidence 7888 89999999999653
No 342
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.63 E-value=0.0044 Score=70.99 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=108.3
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c 572 (891)
.|+++...|.+..+.+ ...|++++.++.+ |+++++++|++.+ ..+++.. ..|... |
T Consensus 87 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~t----klv~le~psnptg~v~dl~~I~~la 157 (378)
T TIGR01329 87 EIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPKT----KLVLLESPTNPLQKIVDIRKISEMA 157 (378)
T ss_pred EEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcCc----eEEEEECCCCCCCeeecHHHHHHHH
Confidence 4777777787765543 3468888888873 8899998887432 1223222 223322 3
Q ss_pred hhh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|+ + -++|.+..++|||+++|-+ .|+++++++..... +.. +...
T Consensus 158 ~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~-~~~---~~~~----------- 222 (378)
T TIGR01329 158 HAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKK-VYF---LQNS----------- 222 (378)
T ss_pred HHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHH-HHH---HHHh-----------
Confidence 331 222 1 2589999999999999977 88888877643221 110 0000
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEe-CC-----C-----------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS-ND-----V-----------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil-~~-----~-----------~~~iV~Fr 697 (891)
.+-....+..|.. ..+.+.+..++++...++..+++.|+++|.+.-+ -+ | ..++++|.
T Consensus 223 ---~G~~~~~~~a~l~--~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~ 297 (378)
T TIGR01329 223 ---TGSGLAPFDCWLL--LRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFE 297 (378)
T ss_pred ---cCCcCCHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEE
Confidence 0111112233443 3466788889999999999999999988776322 11 1 13799999
Q ss_pred ecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 698 LRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
+.+. ....++.+.|..-++
T Consensus 298 ~~~~------~~~~~~~~~L~~~~i 316 (378)
T TIGR01329 298 TGSV------ALSKRLVEATKLFSI 316 (378)
T ss_pred ECCH------HHHHHHHHhCcCccc
Confidence 9321 235577777755443
No 343
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=97.63 E-value=0.0011 Score=74.86 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=71.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC-C-CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD-K-NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~-~-g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.....++...|.+++.|+++. + ..+|+++|++++.+.. -+++++.-+|.||.+-| +++|+
T Consensus 89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~ 162 (350)
T TIGR03537 89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEET------KIVWINYPHNPTGATAPRSYLKETI 162 (350)
T ss_pred eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhcc------EEEEEeCCCCCcCcccCHHHHHHHH
Confidence 377777788888888888888999999973 3 4589999999886542 35666678999999888 88999
Q ss_pred HHHHHcCCceeeecccc
Q psy852 219 PVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~G 235 (891)
++|+++++++.+|.+|+
T Consensus 163 ~~a~~~~~~ii~De~y~ 179 (350)
T TIGR03537 163 AMCREHGIILCSDECYT 179 (350)
T ss_pred HHHHHcCcEEEEecccc
Confidence 99999999999999995
No 344
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=97.60 E-value=0.006 Score=72.74 Aligned_cols=86 Identities=10% Similarity=0.007 Sum_probs=70.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-++......+.+.|.+++.++++++ +.+|+++|++.+...+ -+|+++..+|.||.+-+ +++|+
T Consensus 234 ~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------k~i~i~nP~NPTG~v~~~~~l~~i~ 307 (517)
T PRK13355 234 EVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRT------KAIVIINPNNPTGALYPREVLQQIV 307 (517)
T ss_pred EEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCc------eEEEEECCCCCCCcCcCHHHHHHHH
Confidence 3677777777777777777889999998754 6799999999886543 36666778999999988 88899
Q ss_pred HHHHHcCCceeeecccc
Q psy852 219 PVAKEFDVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~G 235 (891)
++|++++++|.+|-+|+
T Consensus 308 ~~a~~~~~~ii~DE~Y~ 324 (517)
T PRK13355 308 DIAREHQLIIFSDEIYD 324 (517)
T ss_pred HHHHHcCcEEEEehhhh
Confidence 99999999999999994
No 345
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=97.60 E-value=0.0011 Score=76.69 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=69.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~ 218 (891)
.|+++.-++......+...|.+++.+++++ ++.+|+++|++.+.+. +-+|+.+..+|.||.+- .+++|+
T Consensus 130 ~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~ 203 (412)
T PTZ00433 130 NILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDII 203 (412)
T ss_pred EEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHH
Confidence 366667778778878877788999999864 4689999999887653 23566777899999864 577889
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|++++++|++|-+|+.+
T Consensus 204 ~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 204 RLCEELRLPLISDEIYAGM 222 (412)
T ss_pred HHHHHcCCeEEEecccccc
Confidence 9999999999999999543
No 346
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.59 E-value=0.0031 Score=72.40 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
.++|.+..+.+|+++++-+ .|+++.+++ .+...... .+. .++ -...++-.|..++ |.+
T Consensus 196 ~g~Div~~S~sK~l~g~g~~~gG~v~~~~~-~i~~~~~~----~~~---------~~g----~~~~~~~a~l~~~--~L~ 255 (386)
T PRK06767 196 LGCDAVVHSATKYIGGHGDVVAGVTICKTR-ALAEKIRP----MRK---------DIG----GIMAPFDAWLLLR--GLK 255 (386)
T ss_pred cCCcEEEecCcceecCCCCceeEEEEeChH-HHHHHHHH----HHH---------HhC----CCCCHHHHHHHHc--CCC
Confidence 3579999999999998876 466666543 23221110 000 000 0112344565544 445
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCc
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------RLGLVCFRLRSENNLIADQNNRKLLEDINASGR 722 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~ 722 (891)
-+..++++..++++++++.|+++|+++.+.-| ..++|+|.+++. .....++.+.|...++
T Consensus 256 tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-----~~~~~~f~~~l~~~~~ 326 (386)
T PRK06767 256 TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGG-----KEETQAFINDLHFITI 326 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCC-----HHHHHHHHHhCCccEE
Confidence 66678899999999999999999999865422 247999999642 2345677777765543
No 347
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=97.59 E-value=0.0078 Score=69.69 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=102.5
Q ss_pred EEecccchHHH----HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hh
Q psy852 509 AYCSKEAHSCV----EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~Sv----~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~ 573 (891)
|+++...+... ...+...+++++.++. .|+++|++++++.+ ..+++. +-.|... |+
T Consensus 102 Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~t----klV~l~~P~NPtG~v~dl~~I~~la~ 172 (405)
T PRK08776 102 LVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQSP----KLVLIETPSNPLLRITDLRFVIEAAH 172 (405)
T ss_pred EEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcCC----eEEEEECCCCCCCccCCHHHHHHHHH
Confidence 55555555542 2223345677777765 37888888886432 122332 2234432 33
Q ss_pred hh-----hc-----C-----C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 574 RK-----SQ-----G-----I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 574 ~~-----ld-----G-----i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
++ +| + + -++|-+..|+||++++|-+ .|+++.++++.... +.. ... ..+
T Consensus 173 ~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~-l~~----~~~---------~~g 238 (405)
T PRK08776 173 KVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQ-LVW----WAN---------ALG 238 (405)
T ss_pred HcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHH-HHH----HHH---------hcC
Confidence 21 11 1 1 2579999999999998865 57777766543222 110 000 001
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~ 698 (891)
. ....+..|..+ .|.+-+..++++..+++..+.+.|++.|.+.-+.-| -.++++|.+
T Consensus 239 ~----~~s~~~a~l~~--~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~ 312 (405)
T PRK08776 239 L----TGSPFDAFLTL--RGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFEL 312 (405)
T ss_pred C----CCCHHHHHHHH--hhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEE
Confidence 1 12345566665 477788999999999999999999998887533211 136999999
Q ss_pred cCCcchhhhhhHHHHHHHHHh
Q psy852 699 RSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~~ 719 (891)
++. .+...++++.|..
T Consensus 313 ~~~-----~~~~~~f~~~l~l 328 (405)
T PRK08776 313 EGG-----EAAVRAFVDGLRY 328 (405)
T ss_pred cCC-----HHHHHHHHHhCCc
Confidence 742 1223455555543
No 348
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=97.59 E-value=0.0058 Score=70.25 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=82.1
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHh
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLS 657 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~ 657 (891)
.|-+++ .|.++.+ +.+|+++.+++ +.+.+... .. ..+..+ ..+.+++++..+ -.+
T Consensus 248 pdi~~~--sK~lg~gg~~ig~~~~~~~--i~~~~~~~----~~---------~~t~~~----~~~~~aaa~aaL~~~~~~ 306 (396)
T PRK04073 248 PDMYIL--GKALGGGVFPISCVAANRD--ILGVFTPG----SH---------GSTFGG----NPLACAVSIAALEVLEEE 306 (396)
T ss_pred CCEEEe--cccccCCCCcceEEEEcHH--HHhhhcCC----CC---------CCCCCC----CHHHHHHHHHHHHHHHhc
Confidence 576665 6998877 67888887643 22222100 00 011111 123333333333 233
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
+ ..++..++.++|.+.|+++.. ..+.+ +.-+.+.+.+.. ....+.++|.+.|++.. + .+..+
T Consensus 307 ~---l~~~~~~~~~~l~~~L~~l~~-~~i~~~~~~g~~~~~~~~~--------~~~~~~~~l~~~Gv~~~-~---~~~~~ 370 (396)
T PRK04073 307 K---LPERSLELGEYFKEQLKEIDN-PMIKEVRGRGLFIGVELNE--------PARPYCEALKEEGLLCK-E---THETV 370 (396)
T ss_pred C---HHHHHHHHHHHHHHHHHhhcC-CcccceecceEEEEEEecc--------hHHHHHHHHHHCCeEEe-c---CCCCE
Confidence 3 345666788999999987522 12222 233456666531 24578888888998742 2 23346
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ |+++...|++|||++++.|++.+
T Consensus 371 iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 371 IRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEECCcccCHHHHHHHHHHHHHHh
Confidence 7 99888899999999999998764
No 349
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=97.59 E-value=0.015 Score=66.01 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=139.9
Q ss_pred eEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE----ecCCccc-------
Q psy852 507 LMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS----TTLGTTS------- 571 (891)
Q Consensus 507 ~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~------- 571 (891)
-.++++...|+.-....+ -+|+++..++.+ |.++|++. ++. . .+.|+ ++.|...
T Consensus 165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~----~-~~gv~vQyP~~~G~~~~d~~~l~ 233 (450)
T COG0403 165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DDG----D-VFGVLVQYPNTFGIVEEDLRALI 233 (450)
T ss_pred ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-ccc----C-eEEEEEecCCCCCccchhHHHHH
Confidence 359999999997766664 257888888886 88888887 331 1 22222 3455332
Q ss_pred --hhhh-------h----------cCCCCccEEEEcCcccCCcccc-----cEEEEEeCCccchhhhccCCCccccCCCC
Q psy852 572 --CYRK-------S----------QGIEYADSFNVNVNKWLLTAFD-----SSCLWVADRYKLTSALVVDPLYLQHGHEG 627 (891)
Q Consensus 572 --c~~~-------l----------dGi~~aDSIs~d~HK~L~~P~g-----~G~llvR~~~~L~~~l~~~~~Yl~~~~e~ 627 (891)
++.+ . -|--+||=+.=|.+- +|+|++ +|.+-+|++. .+.+-+..-....+..+
T Consensus 234 ~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~Qr-fGvPmgfGGPhag~fA~~~~~--~R~mPGRlVG~S~D~~G 310 (450)
T COG0403 234 EAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQR-FGVPMGFGGPHAGYFAVKDEF--KRQMPGRLVGVSVDAAG 310 (450)
T ss_pred HHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcc-cCCCcCCCCcceeeeeEhHhH--hhcCCCceeeeeecCCC
Confidence 1110 0 123457888888877 445655 7788888763 22211111111111111
Q ss_pred CccccCCcc--c----cccccc------------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC-CcEEeCC
Q psy852 628 AIDYRHWGI--P----LSRRFR------------SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDP-RFEISND 688 (891)
Q Consensus 628 ~~~~~~~ti--~----~SRr~~------------aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~-~~eil~~ 688 (891)
. ..+.+ + -=||-. |+..-..+-++|.+|++++.++.++++.+|.++|++.. +++++.+
T Consensus 311 ~---~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~ 387 (450)
T COG0403 311 K---RAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD 387 (450)
T ss_pred C---chhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc
Confidence 1 11222 1 112211 23334445578999999999999999999999999764 6888877
Q ss_pred CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 689 VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 689 ~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.-+..+.+++.. ..+..+..+....|+-... +... .+ +++...+|++||+.+++++...
T Consensus 388 ~fFdt~~v~~~~-------~~~~~l~~~~~~~G~~L~~---~~~~-~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 388 HFFDTFTVRVPE-------EVAEALLAAAIAGGINLRR---VDAD-TVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred cceeeEEEecch-------hHHHHHHHHHHhcCCceee---ecCC-ceEEEeecccCHHHHHHHHHHHhhh
Confidence 778899999852 3566777777777764211 1112 45 8888899999999999988754
No 350
>PRK07683 aminotransferase A; Validated
Probab=97.58 E-value=0.0013 Score=75.37 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC-CccccccccCCCCCCCCcccc
Q psy852 33 VLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPN-DIDMNIEDYMTPANQPQSLGG 111 (891)
Q Consensus 33 ~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~-~~~~~~~~~~t~~~~~~~~~g 111 (891)
.+.+.+...+..+...|...+...++++.+.+++.+..|++-+ |+ ++ ..|+|
T Consensus 45 ~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~-------------~~~~I--------------~~t~G 97 (387)
T PRK07683 45 HVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYS-------------PESEI--------------IVTIG 97 (387)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------------CCCcE--------------EEeCC
Confidence 3444555554444334433445678888888898877776432 11 11 12455
Q ss_pred hhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecCCC-CcccHHHHHHHHHhhh
Q psy852 112 GVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDE 190 (891)
Q Consensus 112 Gt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~-g~id~~~L~~~l~~~~ 190 (891)
++ +.....+.. --. +...|+++.-+......++...|.+++.+++|++ ..+|.++|++.+.+.
T Consensus 98 ~~-~al~~~~~~-l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~- 161 (387)
T PRK07683 98 AS-EAIDIAFRT-ILE-------------PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEK- 161 (387)
T ss_pred hH-HHHHHHHHH-hCC-------------CCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcC-
Confidence 54 222211111 111 1123666555544555556667889999999865 467889999887643
Q ss_pred hcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccC
Q psy852 191 TMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 191 ~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
+.+|+++..+|.||.+ +++++|+++|+++|+++++|.+|+.
T Consensus 162 -----~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~ 205 (387)
T PRK07683 162 -----TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSE 205 (387)
T ss_pred -----ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccccc
Confidence 3466777889999998 4588899999999999999999954
No 351
>PRK13578 ornithine decarboxylase; Provisional
Probab=97.58 E-value=0.0072 Score=73.97 Aligned_cols=257 Identities=13% Similarity=0.021 Sum_probs=142.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH-HHHcCceEEEecCCC--C---CCcC
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA-AMMAFVRLKILEPDD--K---NSLR 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka-a~l~gv~v~~Vp~d~--~---G~mD 542 (891)
+.|.|-+|..++.++-. +.-.|++...+|-|+..+ +.+.|...+.+++.. . |.++
T Consensus 196 vNGTS~gn~a~i~a~~~-------------------~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~ 256 (720)
T PRK13578 196 LNGTSASNKVVTNALLT-------------------PGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGID 256 (720)
T ss_pred eCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcCCCC
Confidence 34667778877666321 223589999999999996 678899888887543 2 3456
Q ss_pred HHH-----HHHHHHhhh-h--cCCcc-EEEEecCCccc-------------hhh----hhc--------------C----
Q psy852 543 GAT-----LRQVMQQDE-T--MGYIP-FFVSTTLGTTS-------------CYR----KSQ--------------G---- 578 (891)
Q Consensus 543 ~~~-----Le~aI~~d~-~--~g~ip-~~VvataGTT~-------------c~~----~ld--------------G---- 578 (891)
++. ++++|++.. + ....| -+|+.|..|.. |+. ++| +
T Consensus 257 ~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~~llvDEAhgah~~F~p~~~~~p~~ 336 (720)
T PRK13578 257 AHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPL 336 (720)
T ss_pred hHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCCcEEEeCcchhhhccCcccccCChh
Confidence 544 999987751 1 11233 45555555544 111 011 1
Q ss_pred --CCCcc----EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC-CCccccCCcccccccc----cchHH
Q psy852 579 --IEYAD----SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE-GAIDYRHWGIPLSRRF----RSLKL 647 (891)
Q Consensus 579 --i~~aD----SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e-~~~~~~~~ti~~SRr~----~aL~l 647 (891)
-.++| .++-|.||.|.+--.++.+.+++.. + .++..|+....- ..+. -.+.|-+. .+|-+
T Consensus 337 al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~-i----~g~~~~v~~~r~~~al~----m~qSTSPsY~LmASLDv 407 (720)
T PRK13578 337 LLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH-I----KGQARYCPHKRLNNAFM----LHASTSPFYPLFAALDV 407 (720)
T ss_pred hhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc-c----ccccccCCHHHHHHHHH----HHcCCChHHHHHHHHHH
Confidence 14578 9999999999988888888887642 1 111122211000 0000 00011111 11222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh-ccCCCcEEeCCC-------------------------------------
Q psy852 648 WFVIRTYGLSGLQKYIRRHCELAKLFEGKV-RRDPRFEISNDV------------------------------------- 689 (891)
Q Consensus 648 W~~L~~lG~~G~~~~i~~~~~lA~~L~~~L-~~~~~~eil~~~------------------------------------- 689 (891)
...+. .|..| ++.+++.++++..+.++| +.+++|+++.+.
T Consensus 408 a~~~m-~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~ 485 (720)
T PRK13578 408 NAKMH-EGESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYA 485 (720)
T ss_pred HHHHH-HHhhC-HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCcccccccccc
Confidence 11111 11122 445666777777777777 666778776421
Q ss_pred ------ceeEEEEEecCCcc-----hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 690 ------RLGLVCFRLRSENN-----LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 690 ------~~~iV~Fr~~~~~~-----~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~e 757 (891)
+..-|.+..++.+. ++..--...+.+.|.++|+. ....+.+.+ +-+....|++++++++++|.+
T Consensus 486 ~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~----~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~ 561 (720)
T PRK13578 486 EDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIV----PEKCDLNSILFLLTPAEDMAKLQQLVAMLAR 561 (720)
T ss_pred ccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCE----EEecCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 11112222222210 00000035677778778887 555555556 777888899999999999987
Q ss_pred HH
Q psy852 758 ML 759 (891)
Q Consensus 758 i~ 759 (891)
+.
T Consensus 562 f~ 563 (720)
T PRK13578 562 FE 563 (720)
T ss_pred HH
Confidence 64
No 352
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=97.58 E-value=0.02 Score=65.99 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=86.1
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.+++ .|.++.=+++|+++.+++ +.+.+... .+ ..+.. +-+.......++|+.+.. .+
T Consensus 241 pDi~t~--~K~lggG~pigav~~~~~--i~~~~~~~----~~---------~~t~~-~~p~~~aaa~a~l~~~~~---~~ 299 (397)
T TIGR03246 241 PDILTS--AKALGGGFPIGAMLTTTE--IAAHLKVG----TH---------GTTYG-GNPLACAVAGKVLDLVNT---PE 299 (397)
T ss_pred CCEEEe--ehhhhCCcceeEEEEcHH--HHHhccCC----Cc---------CCCCC-CCHHHHHHHHHHHHHHhh---cc
Confidence 577754 787754467888888654 32222110 00 11111 112223333445554433 34
Q ss_pred HHHHHHHHHHHHHHHhccCC-CcEEeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDP-RFEISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~-~~eil~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
..++..++.++|.++|+++. .+.++.+. .-.++.+.+.+. .+.....+...|.+.|++... .+..++ +
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~----~~~~~~~~~~~l~~~Gv~~~~----~g~~~lR~ 371 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEA----YQGKAKQFVNAAAEEGVIALI----AGPNVVRF 371 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCc----hhhHHHHHHHHHHHCCeEEee----cCCCEEEE
Confidence 56777788888888887742 12222221 123444444321 123456888899999988432 233567 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
++....|++|||++++.|++.+
T Consensus 372 ~p~~~~t~~~i~~~~~~l~~~l 393 (397)
T TIGR03246 372 APSLVISDDDIDEGLARFERAI 393 (397)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 8888899999999999998776
No 353
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=97.58 E-value=0.012 Score=66.94 Aligned_cols=239 Identities=10% Similarity=-0.009 Sum_probs=132.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++...+.+. . .+...|++..-.+......+...|++++.+|.++++.+|
T Consensus 90 ~i~--~t~G~~~~l~~~~~~~----~---------------~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 148 (371)
T PRK05166 90 RII--LGNGSEDLIAVICRAV----L---------------RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFD 148 (371)
T ss_pred HEE--EcCCHHHHHHHHHHHh----c---------------CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCC
Confidence 566 7788888876555432 1 012246666667777777778889999999999889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh----hhcCC-----------------CCc--cE-
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR----KSQGI-----------------EYA--DS- 584 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~----~ldGi-----------------~~a--DS- 584 (891)
+++|++++++.+ ..++++ +-.|++. |.+ .+|.+ ... ..
T Consensus 149 ~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi 224 (371)
T PRK05166 149 LDALCAAVARAP----RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWI 224 (371)
T ss_pred HHHHHHhhhcCC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEE
Confidence 999999987632 123333 2345544 110 00110 000 01
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-HhhHHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGLQKY 662 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~~~~ 662 (891)
+.-++.|.++.| .-+|+++..++.... .+..... .++ ...+.+.+++..+- ..-+++.
T Consensus 225 ~i~SfSK~~~l~GlRiG~~i~~~~~l~~-~~~~~~~-------------~~~------~~~~~q~~~~~~l~~~~~~~~~ 284 (371)
T PRK05166 225 VLRTFSKAYGLAGLRVGYGLVSDPELVG-LLDRVRT-------------PFN------VNGAAQAAALAALDDEEHLAKG 284 (371)
T ss_pred EEeechHhhhcchhheeeeecCCHHHHH-HHHHhcc-------------CCC------CCHHHHHHHHHHhcCHHHHHHH
Confidence 233456655533 335555544332221 1110000 001 11122222333332 2335555
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecC
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQE 741 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~ 741 (891)
.+...+..+++.+.|++. ++.+ .++..+-+.+++. . ..+++.+.|.++|+.+..+........+ +++.
T Consensus 285 ~~~~~~~r~~l~~~L~~~-g~~~-~p~~g~fl~~~~~-~-------~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~- 353 (371)
T PRK05166 285 VALALAERERLKKELAEM-GYRI-APSRANFLFFDAR-R-------PASAVAEALLRQGVIVKPWKQPGFETFIRVSIG- 353 (371)
T ss_pred HHHHHHHHHHHHHHHHHC-cCee-CCCcCCEEEEeCC-C-------CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC-
Confidence 666777788889999886 5665 3445555555542 1 2467888988899875443322224455 7776
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 742 ~tT~edId~li~~L~ei~ 759 (891)
+.++.+++.++|+++.
T Consensus 354 --~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 354 --SPEENDHFVAALDKVL 369 (371)
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 5777888888887664
No 354
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.56 E-value=0.0028 Score=73.17 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=97.3
Q ss_pred EEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...+.+.... +...|++++.++ .+|+++++++|++.+ ..+++. +..|... |
T Consensus 106 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~t----klV~lesp~NptG~v~dl~~I~~la 176 (398)
T PRK07504 106 HVVAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPNT----KVFFLESPTNPTLEVIDIAAVAKIA 176 (398)
T ss_pred EEEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcCc----eEEEEECCCCCCcEecCHHHHHHHH
Confidence 366666555543322 334577777775 378999998886532 122322 2234332 3
Q ss_pred hhh-----hcCC-----------CCccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 573 YRK-----SQGI-----------EYADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 573 ~~~-----ldGi-----------~~aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
+++ +|+. -++|.+..|+|||+++|- ..|.+++.++..+.+.+. .|++.
T Consensus 177 ~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~~------------ 241 (398)
T PRK07504 177 NQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFRH------------ 241 (398)
T ss_pred HHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHHH------------
Confidence 321 2221 258999999999998874 345555555443322111 11110
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC------CCc-----------eeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN------DVR-----------LGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~------~~~-----------~~iV~Fr~ 698 (891)
.+.....+..|..++ |.+.+..++++..++++++.+.|+++|.+.-+. .|+ .++++|.+
T Consensus 242 --~g~~~s~~~A~~~l~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~ 317 (398)
T PRK07504 242 --TGPSLSPFNAWTLLK--GLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFEL 317 (398)
T ss_pred --hCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEe
Confidence 011233455566654 667788899999999999999999998875321 221 46999999
Q ss_pred cC
Q psy852 699 RS 700 (891)
Q Consensus 699 ~~ 700 (891)
++
T Consensus 318 ~~ 319 (398)
T PRK07504 318 KG 319 (398)
T ss_pred CC
Confidence 64
No 355
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=97.55 E-value=0.002 Score=75.99 Aligned_cols=204 Identities=16% Similarity=0.133 Sum_probs=134.9
Q ss_pred CeEEEecCCCChHHHHHHHHcCCeEEEEec--CC----CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH
Q psy852 142 KLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DD----KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA 215 (891)
Q Consensus 142 ~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~--d~----~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~ 215 (891)
...|++-..+|-|+..++.+.|..-+++.+ |+ -|.|+.+.+++++.+..... .++++|.+ |--|.+=+++
T Consensus 110 GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitnp-TYdGv~~n~~ 185 (557)
T COG1982 110 GDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITNP-TYDGVCYNLR 185 (557)
T ss_pred CCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEecC-ccceEeecHH
Confidence 335899999999999998888877777765 34 36799999999988764221 36666666 6779999999
Q ss_pred HHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCc
Q psy852 216 EIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPF 295 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (891)
+|.+.++.+++|+-+|-|.|-..-+++.
T Consensus 186 ~i~~~~~~~~a~v~~deah~~~~~~~~~---------------------------------------------------- 213 (557)
T COG1982 186 KIVELLHHYGAWVLYDEAHPAHFDFSPM---------------------------------------------------- 213 (557)
T ss_pred HHHHHHhhcCceEEhhhcCccccccccc----------------------------------------------------
Confidence 9999999999999999988432221110
Q ss_pred cchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCcc
Q psy852 296 VDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTA 375 (891)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p 375 (891)
.|+ ..+ -..+|.++-+.||.+.+=
T Consensus 214 ----------------------------------------------------l~~--~~~--~~~~~~~tqS~HK~l~al 237 (557)
T COG1982 214 ----------------------------------------------------LPE--SAL--NGGADFVTQSTHKLLAAL 237 (557)
T ss_pred ----------------------------------------------------Ccc--hhh--hcCceEEEechhhhhhhh
Confidence 011 000 014699999999987776
Q ss_pred CCceEEEEeccccchhhcccCccccCCCCCCcccccccccCCCCC-hhHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHH
Q psy852 376 FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFV--IRTYGLSGLQKYIRRHCELAKLF 452 (891)
Q Consensus 376 ~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~-~~~l~~w~~--l~~~g~~G~~~ii~~~lelAr~l 452 (891)
--+|.+-+++..... .-..+-.|+.+. +..-|-. +++|-+ +. +...|+.-+++-+...++..+++
T Consensus 238 SQaS~iHv~~~~~~~-~~r~nea~~~h~----------STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~ 305 (557)
T COG1982 238 SQASMIHVKDGRAVN-HERFNEALMMHQ----------STSPSYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKAL 305 (557)
T ss_pred hhhHHHhhCCCccCC-HHHHHHHHHHHc----------cCCchHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 667888888631110 000111111111 0011111 244544 22 22356666666799999999999
Q ss_pred HHhhccCCccccccCCC
Q psy852 453 EGKVRRDPRFEISNDVR 469 (891)
Q Consensus 453 ~~~L~~~~~~eVv~~it 469 (891)
.+.+.+.++|+++++..
T Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (557)
T COG1982 306 RRLINEIGFFPVLQPEK 322 (557)
T ss_pred HHHHHhcCCeeeccccc
Confidence 99999999999998754
No 356
>PRK06107 aspartate aminotransferase; Provisional
Probab=97.55 E-value=0.0079 Score=69.20 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=61.2
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-.++.-..++...+...+.++++. .+.+|+++|++.+.+. +.+|+++..+|.||.+-+ +++|+
T Consensus 119 ~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l~ 192 (402)
T PRK06107 119 EVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSNPTGAVYSRAELRALA 192 (402)
T ss_pred EEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 366655544444444554556777788753 3569999999887543 346666778999997765 56778
Q ss_pred HHHHHc-CCceeeecccc
Q psy852 219 PVAKEF-DVWLHVDGAYA 235 (891)
Q Consensus 219 ~i~~~~-~~~lHvDaA~G 235 (891)
++|+++ ++++.+|-+|+
T Consensus 193 ~~a~~~~~~~iI~De~y~ 210 (402)
T PRK06107 193 DVLLRHPHVLVLTDDIYD 210 (402)
T ss_pred HHHHHcCCeEEEEehhcc
Confidence 888998 99999999995
No 357
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=97.55 E-value=0.028 Score=64.40 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=81.6
Q ss_pred ccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-++++ |+++.++ ++|+++.+++ +.+.+.... + ..+.. +-++.....-.+|+.+..+++.
T Consensus 240 pd~~~~s--K~l~~g~~~ig~v~~~~~--~~~~~~~~~-~------------~~t~~-~~~~~~~aa~~~l~~i~~~~~~ 301 (400)
T PTZ00125 240 PDIVLLG--KALSGGLYPISAVLANDD--VMLVIKPGE-H------------GSTYG-GNPLACAVAVEALEVLKEEKLA 301 (400)
T ss_pred CCEEEEc--ccccCCCcCcEEEEEcHH--HHhhccCCC-C------------CCCCC-cCHHHHHHHHHHHHHHHhcCHH
Confidence 4777765 9998776 8899888664 222111100 0 00111 1112222222334444444444
Q ss_pred HHHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
+ +..++.+++.+.|++. +.+..+ .+...++.+.+.+.. ......+.++|.+.|+++ .+. +...+
T Consensus 302 ~---~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~----~~~~~~~~~~l~~~Gv~v-~~~---~~~~l 369 (400)
T PTZ00125 302 E---NAQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSD----GVNAWDLCLKLKENGLLA-KPT---HDNII 369 (400)
T ss_pred H---HHHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCc----chHHHHHHHHHHHCCeEE-eec---CCCEE
Confidence 3 3344566666666553 222212 223345555554211 123457888888889774 332 34566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++..+++++|+++++.|.+.+.
T Consensus 370 Ri~~~~~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 370 RFAPPLVITKEQLDQALEIIKKVLK 394 (400)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHH
Confidence 988888899999999999998764
No 358
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=97.55 E-value=0.0083 Score=68.30 Aligned_cols=251 Identities=10% Similarity=0.005 Sum_probs=137.6
Q ss_pred HHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceE
Q psy852 451 LFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL 530 (891)
Q Consensus 451 ~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v 530 (891)
.+++.+.-.+. +|+ +++|+++++..++.+.- .+...|++..-.++.....+.+.|.++
T Consensus 75 ~ia~~~~~~~~-~I~--it~G~~~~l~~~~~~~~-------------------~~gd~vlv~~p~y~~~~~~~~~~g~~~ 132 (369)
T PRK08153 75 ALAAHHGVAPE-NIM--VGEGIDGLLGLIVRLYV-------------------EPGDPVVTSLGAYPTFNYHVAGFGGRL 132 (369)
T ss_pred HHHHHhCCCHH-HEE--EcCCHHHHHHHHHHHhc-------------------CCCCEEEECCCcchHHHHHHHHcCCeE
Confidence 33344433333 566 67888887665544321 012246777777777777777788899
Q ss_pred EEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh--h-----h---------cC-CCCc
Q psy852 531 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR--K-----S---------QG-IEYA 582 (891)
Q Consensus 531 ~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~--~-----l---------dG-i~~a 582 (891)
+.+|.+.+ .+|+++|++.+.... ...+++++ -.|++. |.. + + ++ ....
T Consensus 133 ~~vp~~~~-~~~~~~l~~~~~~~~---~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~ 208 (369)
T PRK08153 133 VTVPYRDD-REDLDALLDAARREN---APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPI 208 (369)
T ss_pred EEeeCCCC-CCCHHHHHHHhcccC---CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhh
Confidence 99998766 489998877765321 11223322 246654 110 0 0 11 0000
Q ss_pred -----c-EEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 583 -----D-SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 583 -----D-SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
+ -+.-++.|.++.| .-+|+++... +.+ +.+. .... ++ ...+.++++...+
T Consensus 209 ~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~-~~~-~~l~~~~~~--------------~~------~s~~~q~~~~~~l 266 (369)
T PRK08153 209 DTDDPNVIRMRTFSKAYGLAGARVGYAIGAP-GTI-KAFDKVRNH--------------FG------MNRIAQAAALAAL 266 (369)
T ss_pred hhcCCCEEEEecchHhccCcchheeeeecCH-HHH-HHHHHhhcC--------------CC------CCHHHHHHHHHHh
Confidence 1 1233556666544 3345555422 211 1111 0000 01 1233444444444
Q ss_pred HH-hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 655 GL-SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 655 G~-~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
.. +-+++..+...+..+++.+.|++. ++.+. +...+.+.+++... +.....+.++|.+.|+.+..+....+.
T Consensus 267 ~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~-----~~~a~~l~~~l~~~Gi~v~~p~~~~~~ 339 (369)
T PRK08153 267 KDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRD-----GAFARAVLDGLIARDIFVRMPGVAPLD 339 (369)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCC-----cccHHHHHHHHHHCCeEEeeCCCCCCC
Confidence 32 224455556667778888888765 55543 44556666665321 235678899999999875334332233
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ ++++ +++|+++++++|+++.
T Consensus 340 ~~iRis~~---~~~~~~~~~~al~~~~ 363 (369)
T PRK08153 340 RCIRVSCG---PDEELDLFAEALPEAL 363 (369)
T ss_pred CeEEEecC---CHHHHHHHHHHHHHHH
Confidence 456 8776 7899999999999876
No 359
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00061 Score=75.24 Aligned_cols=205 Identities=17% Similarity=0.230 Sum_probs=121.2
Q ss_pred CCChHHHHHH-HHcCCeEEEEec----------CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccc---cccCHH
Q psy852 150 EAHSCVEKAA-MMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCC---SFDNLA 215 (891)
Q Consensus 150 ~~H~Sv~kaa-~~~~~~v~~V~~----------d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~G---avDpl~ 215 (891)
..|+-.-++- ...|.-.+-|++ +=.|-+|++.|++.|++.-. ..+|+++....-|+..| ++.+++
T Consensus 131 N~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~-~nvp~I~~tiT~NsagGQpVSm~n~r 209 (471)
T COG3033 131 NYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGA-DNVPYIVLTITNNSAGGQPVSMANMK 209 (471)
T ss_pred cceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCc-ccCcEEEEEEeccccCCCcchHHhHH
Confidence 4566665554 233333333333 23688999999999987532 24566665555566555 568899
Q ss_pred HHHHHHHHcCCceeeeccccCCccccCCCCccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCc
Q psy852 216 EIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPF 295 (891)
Q Consensus 216 ~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (891)
++.++|++|++++..|+|- -+-+|.|++++.
T Consensus 210 ~v~~ia~ky~ipvv~Da~R----------------------------------faENaYFIk~rE--------------- 240 (471)
T COG3033 210 AVYEIAKKYDIPVVMDAAR----------------------------------FAENAYFIKQRE--------------- 240 (471)
T ss_pred HHHHHHHHcCCcEEeehhh----------------------------------hhhhhhhhhhcC---------------
Confidence 9999999999999999987 123455555542
Q ss_pred cchhhHHHHhhhhhccccccccccccccccccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCcc
Q psy852 296 VDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTA 375 (891)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p 375 (891)
..||| |-.-| |.. +-++++|.++.++-|=++++
T Consensus 241 ----------------------------~gYrd-----~sI~~--------Iar------Em~sYaD~~~mS~KKD~lvn 273 (471)
T COG3033 241 ----------------------------PGYRD-----WSIEE--------IAR------EMYSYADGCTMSAKKDGLVN 273 (471)
T ss_pred ----------------------------ccccc-----ccHHH--------HHH------HHHhhhhhheeeccccceec
Confidence 11221 10000 111 23468999999999999999
Q ss_pred CCceEEEEeccccch--hhcccCccccCCCCCCcccccccccCCCCChhHHH--HHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy852 376 FDSSCLWVADRYKLT--SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLK--LWFVIRTYGLSGLQKYIRRHCELAKL 451 (891)
Q Consensus 376 ~~~g~~~~r~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~sr~~~~l~--~w~~l~~~g~~G~~~ii~~~lelAr~ 451 (891)
.+ |+|.+||...+. .... .---++.+ +-.|+=--+|...+++ +.-+++ ..++++-++..+|
T Consensus 274 mG-Gfl~~~D~~~fDvy~~~~-~~~V~~eG------~~tYGgl~GrdmealAvGL~e~~~-------~~yl~~Rv~Qv~Y 338 (471)
T COG3033 274 MG-GFLCFKDDSFFDVYEECR-TLVVVQEG------FPTYGGLAGRDMEALAVGLREGVN-------FDYLAHRVAQVQY 338 (471)
T ss_pred cc-cEEEecCccHHHHHHHHH-hheEeecc------ccccCcccchhHHHHHHHHHHhcC-------cHHHHHHHHHHHH
Confidence 98 999999875321 1110 00011111 1122222234433333 222221 3567888888999
Q ss_pred HHHhhccCCccccccC
Q psy852 452 FEGKVRRDPRFEISND 467 (891)
Q Consensus 452 l~~~L~~~~~~eVv~~ 467 (891)
+.+.|.+ .|+.|+.|
T Consensus 339 L~~~l~~-~GVpi~~p 353 (471)
T COG3033 339 LADGLEE-AGVPIVQP 353 (471)
T ss_pred HHHHHHh-cCCeeEec
Confidence 9999987 46666644
No 360
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=97.54 E-value=0.0084 Score=68.98 Aligned_cols=199 Identities=13% Similarity=0.126 Sum_probs=113.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++||++++..++.+. .+ +.-.|+++...|.+....+ ..+++++..++ ..|+
T Consensus 72 ~~~sg~~Ai~~~l~~l----~~---------------~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~ 127 (386)
T PRK08045 72 LTNTGMSAIHLVTTVF----LK---------------PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDE 127 (386)
T ss_pred EECCHHHHHHHHHHHH----cC---------------CCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCH
Confidence 5678888877766542 11 1124666666666433322 22445666553 2578
Q ss_pred HHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
+++++++++.+ ..+++.. ..|+.. |+++ +|. + -++|-+..+.|||+++|
T Consensus 128 e~l~~~l~~~t----klV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~ 203 (386)
T PRK08045 128 QALRAALAEKP----KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGH 203 (386)
T ss_pred HHHHHhcccCC----eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCC
Confidence 88888776532 1222221 123322 2221 111 1 25799999999999988
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++++.... +.....+ .+. ...++..|..++ |.+-+..++++..+++..++
T Consensus 204 ~d~~~G~vi~~~~~~~~~-l~~~~~~-------------~g~----~~~p~~~~l~~r--gl~tl~~R~~~~~~na~~la 263 (386)
T PRK08045 204 SDVVAGVVIAKDPDVVTE-LAWWANN-------------IGV----TGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIV 263 (386)
T ss_pred CCceeEEEEeCcHHHHHH-HHHHHHh-------------cCC----CCCHHHHHHHHh--hhccHHHHHHHHHHHHHHHH
Confidence 87 67777766543221 1100001 011 123456676666 55568999999999999999
Q ss_pred HHhccCCCcEEeC------CC-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 675 GKVRRDPRFEISN------DV-----------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 675 ~~L~~~~~~eil~------~~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+.|++.|.++-+. .| -.++++|.+++. .....++.+.|.-
T Consensus 264 ~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~~f~~~l~~ 320 (386)
T PRK08045 264 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-----EQTLRRFLGGLSL 320 (386)
T ss_pred HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHhccc
Confidence 9999999876432 11 136999999642 1223456666543
No 361
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=97.53 E-value=0.0054 Score=71.19 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=130.8
Q ss_pred cccchHHHHHH-HHHcCceEEEecCC----------CCCCcCHHHHHHHHHhhhhcCCcc--EEEEe--cC-Cccc----
Q psy852 512 SKEAHSCVEKA-AMMAFVRLKILEPD----------DKNSLRGATLRQVMQQDETMGYIP--FFVST--TL-GTTS---- 571 (891)
Q Consensus 512 S~~aH~Sv~Ka-a~l~gv~v~~Vp~d----------~~G~mD~~~Le~aI~~d~~~g~ip--~~Vva--ta-GTT~---- 571 (891)
+...|++-..+ ..+.|..++-+++| .+|.||+++|+++|.+.... .++ .+++. .. |...
T Consensus 114 psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~-~~~lV~~e~t~N~~GG~pvs~~~ 192 (450)
T TIGR02618 114 PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGAD-KIPYICLAVTVNLAGGQPVSMAN 192 (450)
T ss_pred CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCc-ccCceEEEEecccCCCeeCCHHH
Confidence 45667666665 35555555555433 36999999999999864221 122 22222 23 4441
Q ss_pred -------hhh-----hhcC-----------------------------CCCccEEEEcCcccCCcccccEEEEEeCCccc
Q psy852 572 -------CYR-----KSQG-----------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610 (891)
Q Consensus 572 -------c~~-----~ldG-----------------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L 610 (891)
|.+ ++|| ..++|++++|+||-.++|.| |++.+++++..
T Consensus 193 l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~ 271 (450)
T TIGR02618 193 MREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMF 271 (450)
T ss_pred HHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHH
Confidence 322 1111 24699999999999999994 45555887655
Q ss_pred hhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc
Q psy852 611 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR 690 (891)
Q Consensus 611 ~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~ 690 (891)
.++-.....| . .+..++.-.+|...+|.+ .|...- -...+++....+++|.+.|.+. ++.++.++.
T Consensus 272 ~k~r~~~~~~--e------G~~tyGgla~r~~~ala~--gL~e~~---~~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~g 337 (450)
T TIGR02618 272 QSAKELVVVF--E------GMPSYGGLAGRDMEAMAI--GIREAV---DYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG 337 (450)
T ss_pred HHHHHHhhhc--C------CccccCchhhhhHHHHHH--HHHHhh---hHHHHHHHHHHHHHHHHHHHHC-CCcccCCCC
Confidence 4432221122 0 111222222344333321 111111 1245666777899999999997 898888888
Q ss_pred eeEEEEEecCCcch--hhhhhHHHHHHHH-HhCCcEEEe-eccccC------------CeEE-EEecCC-CCHHHHHHHH
Q psy852 691 LGLVCFRLRSENNL--IADQNNRKLLEDI-NASGRLHMV-PASQEQ------------NDEV-FELQER-KRKDDLAYKR 752 (891)
Q Consensus 691 ~~iV~Fr~~~~~~~--~~d~ln~~L~~~L-~~~G~~~~s-~s~~~g------------~~~l-~sv~~~-tT~edId~li 752 (891)
.+.|.+......++ ...--.+.|...| .+.|+--+. ++-..+ -..+ ..+... -|.+++|..+
T Consensus 338 gh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~ 417 (450)
T TIGR02618 338 GHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVA 417 (450)
T ss_pred cceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHH
Confidence 88988876542211 1122345666666 456653211 111100 1334 555443 3889999999
Q ss_pred HHHHHHHH
Q psy852 753 SFFVRMLG 760 (891)
Q Consensus 753 ~~L~ei~~ 760 (891)
++|..+.+
T Consensus 418 ~~~~~~~~ 425 (450)
T TIGR02618 418 DGIIKLYK 425 (450)
T ss_pred HHHHHHHh
Confidence 99998764
No 362
>PRK08175 aminotransferase; Validated
Probab=97.53 E-value=0.0023 Score=73.43 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=68.1
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGPV 220 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~i 220 (891)
.|++++-++.....++...|.+++.|++++++. +.++|+++++... ..+-+|+++..+|.||.+-+. ++|+++
T Consensus 117 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~ 192 (395)
T PRK08175 117 TVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD-FFNELERAIRESY---PKPKMMILGFPSNPTAQCVELEFFEKVVAL 192 (395)
T ss_pred EEEEcCCCCcchHHHHHHcCCeEEEEecccCCC-cHHHHHHHHhhcc---CCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 377777777776666666778999999986543 5888888876421 123466667778999998777 788999
Q ss_pred HHHcCCceeeeccccC
Q psy852 221 AKEFDVWLHVDGAYAG 236 (891)
Q Consensus 221 ~~~~~~~lHvDaA~GG 236 (891)
|+++|+++++|-+|+.
T Consensus 193 a~~~~i~ii~De~y~~ 208 (395)
T PRK08175 193 AKRYDVLVVHDLAYAD 208 (395)
T ss_pred HHHcCcEEEEecchHh
Confidence 9999999999999954
No 363
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0029 Score=71.16 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=124.2
Q ss_pred ceEEEecCC-CCCCcCHHHHHHHHHhhhhcCCccEEEEecCCccc-----------hhh----------hhcC-------
Q psy852 528 VRLKILEPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-----------CYR----------KSQG------- 578 (891)
Q Consensus 528 v~v~~Vp~d-~~G~mD~~~Le~aI~~d~~~g~ip~~VvataGTT~-----------c~~----------~ldG------- 578 (891)
.+++..|+| +++.+|.|++++...+. .|-++++..-... |.+ |+.|
T Consensus 139 ~~~v~Y~vd~et~~IDyD~~~k~a~e~-----kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~ 213 (413)
T COG0112 139 FNVVSYGVDPETGLIDYDEVEKLAKEV-----KPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH 213 (413)
T ss_pred EEeEecccccccCccCHHHHHHHHHHh-----CCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC
Confidence 366777888 56999999999999885 3555555332222 111 4433
Q ss_pred ---CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccc-hHHHHHHHHH
Q psy852 579 ---IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRS-LKLWFVIRTY 654 (891)
Q Consensus 579 ---i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~a-L~lW~~L~~l 654 (891)
++.||-+|.+-||.|-+|-| |++++++.+...+ +... ++ .+.+++=-... .+...+++..
T Consensus 214 p~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kk-in~a---VF-----------Pg~qggpl~HviAakaVa~~Ea 277 (413)
T COG0112 214 PNPLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKK-INSA---VF-----------PGLQGGPLMHVIAAKAVAFKEA 277 (413)
T ss_pred CCCCCccceEeCCcccCCCCCCc-eEEEeccHHHHHH-hhhh---cC-----------CccCCChHHHHHHHHHHHHHHH
Confidence 68899999999999999996 6777776432221 1100 00 11111111111 2334566667
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC-CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc---
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND-VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--- 730 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~-~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--- 730 (891)
-..++++..++..++|+.|++.|.+ .++.+++- .+..+|...+.+. +......-..|.+.|+..=--+-.
T Consensus 278 l~p~fk~Ya~qVv~NAkaLAe~l~~-~G~~vvsGgTdnHl~lVDl~~~-----~~~Gk~ae~~L~~~~It~NKN~iP~D~ 351 (413)
T COG0112 278 LEPEFKEYAKQVVKNAKALAEALKE-RGFKVVSGGTDNHLVLVDLRSK-----GLTGKKAEAALERAGITVNKNAIPFDP 351 (413)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHH-cCCeEecCCccceEEEEEcccC-----CCCHHHHHHHHHHcCEeeccCCCCCCC
Confidence 7788999999999999999999998 68998864 4556666555532 112233444455566552111100
Q ss_pred ----cCCeEEEE----ecCCCCHHHHHHHHHHHHHHH
Q psy852 731 ----EQNDEVFE----LQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ----~g~~~l~s----v~~~tT~edId~li~~L~ei~ 759 (891)
.-.++.+. +.....++|++++.+.|.+++
T Consensus 352 ~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl 388 (413)
T COG0112 352 ESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVL 388 (413)
T ss_pred CCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 11111222 344678888888888888776
No 364
>PRK07324 transaminase; Validated
Probab=97.52 E-value=0.013 Score=66.72 Aligned_cols=245 Identities=10% Similarity=0.032 Sum_probs=134.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +|+|+++++..++.+.- + +.-.|+++.-++.+....++..|++++.+|.+++ ..
T Consensus 82 ~vi--~t~G~~~al~~~~~~l~----~---------------~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 140 (373)
T PRK07324 82 NIL--QTNGATGANFLVLYALV----E---------------PGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWL 140 (373)
T ss_pred hEE--EcCChHHHHHHHHHHhC----C---------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence 555 68899999888776531 1 1113666666777887788888999999998753 46
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC-----------CCc----cEEE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI-----------EYA----DSFN 586 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi-----------~~a----DSIs 586 (891)
+|+++|++++.+.++ .++++ +-.|++. |.+| +|.+ ..+ ..|.
T Consensus 141 ~d~~~l~~~~~~~~k----li~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~ 216 (373)
T PRK07324 141 PDLDELRRLVRPNTK----LICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGIS 216 (373)
T ss_pred CCHHHHHHhCCCCCc----EEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 899999988865321 22332 2355544 3321 1211 001 1233
Q ss_pred -EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hh-hHHHH
Q psy852 587 -VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LS-GLQKY 662 (891)
Q Consensus 587 -~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~-G~~~~ 662 (891)
-+..|.++.| .-+|+++. ++..+. .+.....|. ++ ....+.++++...+. .+ -+++.
T Consensus 217 ~~s~SK~~~~~G~RiG~i~~-~~~li~-~~~~~~~~~-------------~~----~~~~~~q~~a~~~l~~~~~~l~~~ 277 (373)
T PRK07324 217 TNSMSKTYSLPGIRVGWIAA-NEEVID-ILRKYRDYT-------------MI----CAGVFDDMLASLALEHRDAILERN 277 (373)
T ss_pred EecchhhcCCccceeEEEec-CHHHHH-HHHHHhCcE-------------Ee----cCChHHHHHHHHHHcCHHHHHHHH
Confidence 3678887755 33677776 333222 221111110 00 011233344433332 12 22333
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccCCeEE-EEec
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDEV-FELQ 740 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~l-~sv~ 740 (891)
.+...+..+.+.+.|++.+++.+..+........++.. +....++.++|. +.|+.+.-+........+ +++.
T Consensus 278 ~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~------~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~ 351 (373)
T PRK07324 278 RKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDV------DMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC 351 (373)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCC------CCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEec
Confidence 34445567778888887777776654333333344431 123456777764 568875555443334456 8775
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy852 741 ERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 741 ~~tT~edId~li~~L~ei~ 759 (891)
. +++.+++.++.|++.+
T Consensus 352 ~--~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 352 C--DTETLKKGLKKLSEFL 368 (373)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 3 5788888887777665
No 365
>PRK04311 selenocysteine synthase; Provisional
Probab=97.52 E-value=0.0068 Score=71.29 Aligned_cols=217 Identities=15% Similarity=0.081 Sum_probs=117.5
Q ss_pred EEEecccchHHH------HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc------
Q psy852 508 MAYCSKEAHSCV------EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS------ 571 (891)
Q Consensus 508 vI~~S~~aH~Sv------~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~------ 571 (891)
.|++|..+|+++ ...+...|++++.++++ +..++++++++|+++++ ..+.+..+ .|.+.
T Consensus 167 eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~Tk---lV~~vh~sN~~i~G~~~~~dl~e 241 (464)
T PRK04311 167 EVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTA---LLLKVHTSNYRIEGFTKEVSLAE 241 (464)
T ss_pred EEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCe---EEEEEcCCCccccccCCcCCHHH
Confidence 478888777743 22334568888888763 35689999999987542 12222211 24322
Q ss_pred ----hhhh-----hcC-----------------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCC
Q psy852 572 ----CYRK-----SQG-----------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPL 619 (891)
Q Consensus 572 ----c~~~-----ldG-----------------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~ 619 (891)
|++| +|. -.++|.+++|+|||+++|. +|+++.+++ .+ +.+...+
T Consensus 242 I~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~i~g~~~-li-~~l~~~~- 317 (464)
T PRK04311 242 LAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE-LI-ARLKKHP- 317 (464)
T ss_pred HHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc-eEEEEEcHH-HH-HHHhhch-
Confidence 3332 232 0358999999999999995 888888754 22 2121110
Q ss_pred ccccCCCCCccccCCcccccccccc-----hHHHHHHHH--------H---HHhhHHHHHHHHHHHHHHHHHHhccCC--
Q psy852 620 YLQHGHEGAIDYRHWGIPLSRRFRS-----LKLWFVIRT--------Y---GLSGLQKYIRRHCELAKLFEGKVRRDP-- 681 (891)
Q Consensus 620 Yl~~~~e~~~~~~~~ti~~SRr~~a-----L~lW~~L~~--------l---G~~G~~~~i~~~~~lA~~L~~~L~~~~-- 681 (891)
..|.++. .++..+|.. . +..-+...+++..++|+.+++.|+..+
T Consensus 318 ------------------~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~ 379 (464)
T PRK04311 318 ------------------LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA 379 (464)
T ss_pred ------------------hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC
Confidence 1221110 111112221 1 122244455677778888998888764
Q ss_pred C--cEEeC---------CC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecCCCCHHHH
Q psy852 682 R--FEISN---------DV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQERKRKDDL 748 (891)
Q Consensus 682 ~--~eil~---------~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~~tT~edI 748 (891)
+ +++.. .| .+..++..+.+. +.....+.++|.+...-.+. ......+++-+ ....++|+
T Consensus 380 ~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-----~~~~~~l~~~lr~~~~~i~~--r~~~~~~~ld~-r~~~~~~~ 451 (464)
T PRK04311 380 AFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-----DRSLEALAARLRLLPPPVIG--RIEDGRLLLDL-RTLEEEDE 451 (464)
T ss_pred CeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC-----CCCHHHHHHHHhcCCCCEEE--EEECCEEEEEe-CcCCHHHH
Confidence 3 34442 12 234444444332 22346777777763222222 22222222222 24588899
Q ss_pred HHHHHHHHHHH
Q psy852 749 AYKRSFFVRML 759 (891)
Q Consensus 749 d~li~~L~ei~ 759 (891)
+.+++.|+++.
T Consensus 452 ~~~~~~~~~~~ 462 (464)
T PRK04311 452 ERLAAALLEAL 462 (464)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 366
>PRK06207 aspartate aminotransferase; Provisional
Probab=97.52 E-value=0.024 Score=65.51 Aligned_cols=246 Identities=9% Similarity=0.051 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-----C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-----D 537 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-----~ 537 (891)
+|+ +|.|+++++..++.+.- + +.-.|++..-.++.....+...|.+++.||.+ .
T Consensus 104 ~I~--it~Ga~~al~~~~~~l~----~---------------~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 162 (405)
T PRK06207 104 ELI--ITPGTQGALFLAVAATV----A---------------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADK 162 (405)
T ss_pred CEE--EeCCcHHHHHHHHHHhc----C---------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCccc
Confidence 455 67888888876665421 1 12246666667777778888889999989875 3
Q ss_pred CCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCCCC-------c
Q psy852 538 KNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGIEY-------A 582 (891)
Q Consensus 538 ~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi~~-------a 582 (891)
+..+|+++|++++++.++ .++++ +-.|++. |.++ .+|-.. .
T Consensus 163 ~~~~d~~~l~~~~~~~~k----~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ 238 (405)
T PRK06207 163 RAGLDLDQLEEAFKAGVR----VFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI 238 (405)
T ss_pred CCCcCHHHHHHhhhhcCe----EEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC
Confidence 578999999999875321 22222 2345554 2221 111100 0
Q ss_pred c----EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--
Q psy852 583 D----SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-- 655 (891)
Q Consensus 583 D----SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-- 655 (891)
| -..-++.|.++.| .=+|+++.. +..+ +.+.....+ +.+. ...+.+......+.
T Consensus 239 ~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~-~~~~~~~~~-------------~~~~----~~~~~q~a~~~~l~~~ 299 (405)
T PRK06207 239 DPENVITIMGPSKTESLSGYRLGVAFGS-PAII-DRMEKLQAI-------------VSLR----AAGYSQAVLRTWFSEP 299 (405)
T ss_pred CcCcEEEEecchhhccCcccceEEEEcC-HHHH-HHHHHHHhH-------------hccC----CCHHHHHHHHHHHhCc
Confidence 1 2334467766655 126665432 2211 111100000 0000 01122223333332
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cC
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQ 732 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g 732 (891)
..-+++.++...+.++++.+.|++.+++++..+....-++.++++. +.....+.+.|. +.|+.+.-+... .+
T Consensus 300 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~-----~~~~~~~~~~l~~~~gV~v~pG~~F~~~~ 374 (405)
T PRK06207 300 DGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRL-----AVSLHDFVKILRLQAGVIVTPGTEFSPHT 374 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCccc-----CCCHHHHHHHHHHhcCEEEeCchHhCCCC
Confidence 2235677777778888899999887777765444455666776532 112456778886 578876555432 22
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ +++.. +.++++..++.|.+.+
T Consensus 375 ~~~~Ris~~~--~~~~l~~al~rl~~~l 400 (405)
T PRK06207 375 ADSIRLNFSQ--DHAAAVAAAERIAQLI 400 (405)
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 4456 88874 5788888887777655
No 367
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=97.52 E-value=0.0095 Score=68.31 Aligned_cols=222 Identities=10% Similarity=0.100 Sum_probs=140.7
Q ss_pred ceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCC-ccEEEEecC----Cccc--------h
Q psy852 506 KLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY-IPFFVSTTL----GTTS--------C 572 (891)
Q Consensus 506 ~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~-ip~~Vvata----GTT~--------c 572 (891)
+.+|+.-+..|.|+..++++.+.++++.+- -|+++||+.|++....+. ..++|+=.. |+.. |
T Consensus 123 ~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~ 197 (388)
T COG0156 123 GDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELA 197 (388)
T ss_pred CcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHH
Confidence 457888899999999999999988887766 578999999998543332 233333222 3322 1
Q ss_pred hh----------h--------------hcCC--CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCC
Q psy852 573 YR----------K--------------SQGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 626 (891)
Q Consensus 573 ~~----------~--------------ldGi--~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e 626 (891)
.+ | -.|+ ..+|-+.-+..|.++ ..|.++..+.............|+.+.
T Consensus 198 ~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG---s~Gg~v~g~~~~~d~L~~~ar~~ifSt-- 272 (388)
T COG0156 198 EKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG---SSGGYIAGSAALIDYLRNRARPFIFST-- 272 (388)
T ss_pred HHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc---ccCceeeCcHHHHHHHHHhCCceeccC--
Confidence 11 1 1133 345899999999998 567777777653322222223443321
Q ss_pred CCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhh
Q psy852 627 GAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIA 706 (891)
Q Consensus 627 ~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~ 706 (891)
+++ +..+...-.+++.+- ...+..++..++++++...++.. ++.+ .+..++|+.+.+.+
T Consensus 273 --------alp---P~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~-~~~~-~~s~s~I~pv~~gd------ 331 (388)
T COG0156 273 --------ALP---PAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKAL-GLVL-LPSESPIIPVILGD------ 331 (388)
T ss_pred --------CCC---HHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhc-CCcc-CCCCCCeeeeEeCC------
Confidence 111 122222333334332 33455666777788887555543 3433 35567888888754
Q ss_pred hhhHHHHHHHHHhCCcEEE---eeccccCCeEE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 707 DQNNRKLLEDINASGRLHM---VPASQEQNDEV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 707 d~ln~~L~~~L~~~G~~~~---s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei 758 (891)
+....++...|.+.|+... -|+...+..-+ ++++...|++||++++++|.++
T Consensus 332 ~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 332 EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 3467888888988887632 34445666667 9999888999999999998764
No 368
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=97.52 E-value=0.00066 Score=66.70 Aligned_cols=131 Identities=14% Similarity=-0.034 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH-HHHHH
Q psy852 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE-KAAMM 525 (891)
Q Consensus 447 elAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~-Kaa~l 525 (891)
++.+++++.++. +.-.++ ++.|+++++..++.+++.. +..|+++...|.+.. ..+..
T Consensus 4 ~~~~~l~~~~~~-~~~~~~--~~~~~t~a~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~ 61 (170)
T cd01494 4 ELEEKLARLLQP-GNDKAV--FVPSGTGANEAALLALLGP-------------------GDEVIVDANGHGSRYWVAAEL 61 (170)
T ss_pred HHHHHHHHHcCC-CCCcEE--EeCCcHHHHHHHHHHhCCC-------------------CCEEEEeecccceehhhHHHh
Confidence 445566666631 111333 5668899999998886431 124888888888887 77778
Q ss_pred cCceEEEecCCCCCCcCHH--HHHHHHHhhhhcCCccEEEEe--c---CCccc--------hhhh-----hc--------
Q psy852 526 AFVRLKILEPDDKNSLRGA--TLRQVMQQDETMGYIPFFVST--T---LGTTS--------CYRK-----SQ-------- 577 (891)
Q Consensus 526 ~gv~v~~Vp~d~~G~mD~~--~Le~aI~~d~~~g~ip~~Vva--t---aGTT~--------c~~~-----ld-------- 577 (891)
.+.+++.++.+.++..+.+ .+++... ...|.+++. . .|... |+++ +|
T Consensus 62 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~ 136 (170)
T cd01494 62 AGAKPVPVPVDDAGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGAS 136 (170)
T ss_pred cCCEEEEeccCCCCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccc
Confidence 8999999998776554443 4433221 112233322 2 22221 3321 11
Q ss_pred ------C-CCCccEEEEcCcccCCcccccEEEEEe
Q psy852 578 ------G-IEYADSFNVNVNKWLLTAFDSSCLWVA 605 (891)
Q Consensus 578 ------G-i~~aDSIs~d~HK~L~~P~g~G~llvR 605 (891)
. ...+|.++.++|||+++ .++|++++|
T Consensus 137 ~~~~~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 137 PAPGVLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 1 24589999999999998 799999886
No 369
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.51 E-value=0.0053 Score=71.53 Aligned_cols=214 Identities=13% Similarity=0.123 Sum_probs=118.6
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~ 543 (891)
.+++|+.++..++.+. .+ +.-.|+++...|.+..+. +...|++++.++++ |+
T Consensus 83 ~~~SG~~Ai~~al~al----l~---------------pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~ 138 (427)
T PRK05994 83 AVASGHAAQFLVFHTL----LQ---------------PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DP 138 (427)
T ss_pred EEcCHHHHHHHHHHHH----hC---------------CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CH
Confidence 4567788888776553 11 112366666777654433 34467888888763 78
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++. +..|... |+++ +|.. -++|.+..+.|||++.|
T Consensus 139 ~~l~~ai~~~t----klV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~ 214 (427)
T PRK05994 139 ASFERAITPRT----KAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGH 214 (427)
T ss_pred HHHHHhcCcCC----eEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCC
Confidence 89998886532 223332 2234433 3332 2332 35999999999999988
Q ss_pred cc-cEEEEEeCCc-cchhhhccCCCccccCCCCCc---cccCCc-------------ccccccccchHHHHHHHHHHHhh
Q psy852 597 FD-SSCLWVADRY-KLTSALVVDPLYLQHGHEGAI---DYRHWG-------------IPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 597 ~g-~G~llvR~~~-~L~~~l~~~~~Yl~~~~e~~~---~~~~~t-------------i~~SRr~~aL~lW~~L~~lG~~G 658 (891)
-+ .|.+++.... .+.. .....++........ -...+. -..+.....+..|..+ -|.+.
T Consensus 215 ~~~~gG~v~~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~--~~l~t 290 (427)
T PRK05994 215 GNSMGGIIVDGGTFDWSK--SGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLIL--TGIET 290 (427)
T ss_pred CCcEEEEEEeCCcccccc--ccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHH--cCccc
Confidence 75 5666664321 1100 000011111000000 000000 0011223345555544 47788
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+..++++..++|.++.+.|+++|.++-+.-| -.++++|.+++. .....++++.|.
T Consensus 291 L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~-----~~~~~~~~~~l~ 363 (427)
T PRK05994 291 LPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGG-----YEAGVKLVSSLK 363 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCC-----HHHHHHHHHhCC
Confidence 8999999999999999999999987643211 136999999742 123345555554
No 370
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=97.50 E-value=0.0043 Score=70.27 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccc
Q psy852 56 TELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVD 135 (891)
Q Consensus 56 ~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~ 135 (891)
.++..+.-+.+|+++|.++... ..+.||+..+...+..++..
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e~i-----------------------------lv~~gg~~a~~~~~~al~~~--------- 94 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEEKI-----------------------------LVFNRTSSAILATILALEPP--------- 94 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcceE-----------------------------EEECCHHHHHHHHHHHhCCC---------
Confidence 3788888889999999965421 12356664333322222211
Q ss_pred cccccCCeEEEe-c-CCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc--
Q psy852 136 EGVLLSKLMAYC-S-KEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF-- 211 (891)
Q Consensus 136 ~g~~~~~~~v~~-S-~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav-- 211 (891)
.+.+++. + .-.|.|+...+++.+.++... .|+++|+. . . .+.+|++| |++.+|.+
T Consensus 95 -----gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~-------~~l~~l~~----~-~---~~~lIiit-g~s~~G~v~~ 153 (346)
T TIGR03576 95 -----GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES-------DELSELKK----I-D---GTSLVVIT-GSTMDLKVVS 153 (346)
T ss_pred -----CCEEEECCCCCCCchhHHHHHHHcCCEEecc-------CCHHHHhh----C-c---CceEEEEE-CCCCCCcccC
Confidence 1223332 3 468999999888776665322 13444322 1 1 13345555 56888988
Q ss_pred -cCHHHHHHHHHHcCCceeeeccccC
Q psy852 212 -DNLAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 212 -Dpl~~I~~i~~~~~~~lHvDaA~GG 236 (891)
.||++|+++|+++++++.+|-|||-
T Consensus 154 ~~~L~~i~~la~~~~~~livDEAy~~ 179 (346)
T TIGR03576 154 EEDLKRVIKQAKSKEAIVLVDDASGA 179 (346)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCccc
Confidence 8999999999999999999999953
No 371
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=97.50 E-value=0.0028 Score=71.51 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=71.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-++.....++...|.+++.+++++++.+|+++|++.+.... +-+|+++.-+|.||.+-+.+++.++++..
T Consensus 108 vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~i~~~~ 182 (356)
T PRK04870 108 VLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGNLFDDADVERIIEAA 182 (356)
T ss_pred EEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHHC
Confidence 6666777777777777788899999999889999999999886432 23666677899999999999999988877
Q ss_pred CCceeeeccccC
Q psy852 225 DVWLHVDGAYAG 236 (891)
Q Consensus 225 ~~~lHvDaA~GG 236 (891)
+.++++|.+|..
T Consensus 183 ~~~ii~De~y~~ 194 (356)
T PRK04870 183 PGLVVVDEAYQP 194 (356)
T ss_pred CCEEEEECCchh
Confidence 889999999943
No 372
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=97.49 E-value=0.023 Score=66.38 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=142.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-HHcCceEEEecCCC---------
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-MMAFVRLKILEPDD--------- 537 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~l~gv~v~~Vp~d~--------- 537 (891)
++.||++++.+++.+. .+ .++ .| . ...|+....++ .+.|...+.+++++
T Consensus 73 ~t~~Gt~Al~la~~al----~~--------------pGD-~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~p 131 (431)
T cd00617 73 PTHQGRGAENILFSIL----LK--------------PGR-TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIP 131 (431)
T ss_pred EcCCHHHHHHHHHHHh----CC--------------CCC-EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccC
Confidence 6789999999887653 11 112 23 2 45777666554 56788888888863
Q ss_pred -CCCcCHHHHHHHHHhhhhcCCccEEEE----ecC-Cccc-----------hhhh----------h-----------cC-
Q psy852 538 -KNSLRGATLRQVMQQDETMGYIPFFVS----TTL-GTTS-----------CYRK----------S-----------QG- 578 (891)
Q Consensus 538 -~G~mD~~~Le~aI~~d~~~g~ip~~Vv----ata-GTT~-----------c~~~----------l-----------dG- 578 (891)
.|.||+++|+++|.+... ..++++++ +.. |... |.+| + +|
T Consensus 132 f~gniD~e~Le~~I~~~~~-~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~ 210 (431)
T cd00617 132 FKGNIDVAKLEKLIDEVGA-ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGY 210 (431)
T ss_pred CCCCcCHHHHHHHhCcccC-CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccc
Confidence 355999999999986421 12333333 223 5543 3221 1 12
Q ss_pred ------------CCCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchH
Q psy852 579 ------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLK 646 (891)
Q Consensus 579 ------------i~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~ 646 (891)
...+|++++++||-+++|.| |+++.++++.... +.... ... +....+++ +. .|
T Consensus 211 ~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~-~~~~~-~~~---~~~~~~gG--~~-~r------ 275 (431)
T cd00617 211 RDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEE-ARQRV-VLY---EGFVTYGG--MA-GR------ 275 (431)
T ss_pred cCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHH-HHHhc-ccc---CCcccccc--cc-HH------
Confidence 13689999999999998872 4566655433332 22100 000 00000111 11 11
Q ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcch--hhhhhHHHHHHHH-HhCC
Q psy852 647 LWFVIRTYGLSGL--QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNL--IADQNNRKLLEDI-NASG 721 (891)
Q Consensus 647 lW~~L~~lG~~G~--~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~--~~d~ln~~L~~~L-~~~G 721 (891)
...++ ..|.+.. .+.+++..+.+++|.+.|++. ++.+..+.....|........+. .-.-..+.+..+| .+.|
T Consensus 276 ~~~A~-A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~g 353 (431)
T cd00617 276 DMEAL-AQGLREAVEEDYLRHRVEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAG 353 (431)
T ss_pred HHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcC
Confidence 11122 2333222 355677777889999999886 78887776667777776532110 0001356677555 5567
Q ss_pred cEEEe-ec-----cccC-------CeEE-EEecC-CCCHHHHHHHHHHHHHHHH
Q psy852 722 RLHMV-PA-----SQEQ-------NDEV-FELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 722 ~~~~s-~s-----~~~g-------~~~l-~sv~~-~tT~edId~li~~L~ei~~ 760 (891)
+..+. ++ ...+ -..+ +.+.. --|.+++|.+++.|..+.+
T Consensus 354 V~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 354 VRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred eeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 76443 11 1111 2344 65544 4599999999999998874
No 373
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=97.49 E-value=0.0077 Score=69.37 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=102.6
Q ss_pred EEecccchHH----HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hh
Q psy852 509 AYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~ 573 (891)
|+++...|.+ +...+...|++++.++.+ |+++++++|++.++ .+++. +..|... |+
T Consensus 101 Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~tk----lV~le~p~Np~G~v~dl~~I~~la~ 171 (391)
T TIGR01328 101 LISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDNTK----IVYFETPANPTMKLIDMERVCRDAH 171 (391)
T ss_pred EEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccCCe----EEEEECCCCCCCcccCHHHHHHHHH
Confidence 5666665543 333344567788888775 78888888865321 22221 2234332 33
Q ss_pred hh-----hcC-----------CCCccEEEEcCcccCCccccc-EEEEEeCCccchhhhccCCCccccCCCCCccccCCcc
Q psy852 574 RK-----SQG-----------IEYADSFNVNVNKWLLTAFDS-SCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI 636 (891)
Q Consensus 574 ~~-----ldG-----------i~~aDSIs~d~HK~L~~P~g~-G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti 636 (891)
++ +|+ -.++|.+..+++|++++|-+. |.+++.+++.+.........+ . +
T Consensus 172 ~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~----------~--~-- 237 (391)
T TIGR01328 172 SQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKD----------M--T-- 237 (391)
T ss_pred HcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHh----------C--C--
Confidence 21 222 136899999999999988763 445555554333221110000 0 0
Q ss_pred cccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEec
Q psy852 637 PLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRLR 699 (891)
Q Consensus 637 ~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~~ 699 (891)
+-....+..|..++ +.+.+..++++..++++++.+.|++.|.++-+.-| -.++++|.++
T Consensus 238 --g~~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 238 --GSVISPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred --CCCCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 11223345566654 55667788999999999999999999987654222 1369999997
Q ss_pred CCcchhhhhhHHHHHHHHH
Q psy852 700 SENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 700 ~~~~~~~d~ln~~L~~~L~ 718 (891)
+. .....++.+.|.
T Consensus 314 ~~-----~~~~~~f~~~l~ 327 (391)
T TIGR01328 314 GG-----FAGAKKLLNNLK 327 (391)
T ss_pred CC-----HHHHHHHHHhCC
Confidence 42 122345555554
No 374
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=97.49 E-value=0.015 Score=65.70 Aligned_cols=235 Identities=9% Similarity=0.044 Sum_probs=132.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ ++.|+++++..++.+. .+ +...|++..-.......++...|.+++.+|.+ ++.+|
T Consensus 83 ~i~--~t~G~~~~l~~~~~~~----~~---------------~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d 140 (359)
T PRK03158 83 QLL--FGAGLDEVIQMISRAL----LN---------------PGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHD 140 (359)
T ss_pred HEE--ECCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcC
Confidence 455 6778888876544332 11 11236666666666777777889999999997 68899
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhh--h-----hcCC--------------C---C--ccEE
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYR--K-----SQGI--------------E---Y--ADSF 585 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~--~-----ldGi--------------~---~--aDSI 585 (891)
+++|++++++.. ..++++ +..|++. +.. + +|.+ . . -.-+
T Consensus 141 ~~~l~~~~~~~~----~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 216 (359)
T PRK03158 141 LEAMLKAIDEQT----KIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIV 216 (359)
T ss_pred HHHHHHhcCCCC----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEE
Confidence 999998886422 122333 3355554 111 0 0100 0 0 0122
Q ss_pred EEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-HHHH
Q psy852 586 NVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKY 662 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~ 662 (891)
.-++.|.++.| .-+|+++... +.+ +.+. ... .+. ...+.+.++...+.... +++.
T Consensus 217 ~~S~SK~~g~~GlRiG~~v~~~-~~~-~~~~~~~~--------------~~~------~~~~~q~~~~~~l~~~~~~~~~ 274 (359)
T PRK03158 217 LRTFSKAYGLAALRVGYGIASE-ELI-EKLNIARP--------------PFN------TTRIAQYAAIAALEDQAFLKEC 274 (359)
T ss_pred EEechHhhcCcchhhehhcCCH-HHH-HHHHHhcC--------------CCC------CCHHHHHHHHHHhcCHHHHHHH
Confidence 23566766644 4456665432 212 1111 000 000 12344444444443333 3344
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecC
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQE 741 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~ 741 (891)
.+...+..+++.+.|++. ++.+. ++..+.+++++. . ...++.+.|.+.|+.+..+.......++ ++++
T Consensus 275 ~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~-~-------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~- 343 (359)
T PRK03158 275 VEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTG-R-------DANELFEALLKKGYIVRSGAALGFPTGVRITIG- 343 (359)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECC-C-------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-
Confidence 445566677788888776 56664 444556666552 1 2467888888889876655444334566 8876
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy852 742 RKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 742 ~tT~edId~li~~L~ei 758 (891)
+.+++++++++|+++
T Consensus 344 --~~~~~~~l~~al~~~ 358 (359)
T PRK03158 344 --LKEQNDKIIELLKEL 358 (359)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 889999999999875
No 375
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=97.47 E-value=0.0093 Score=73.00 Aligned_cols=253 Identities=12% Similarity=0.072 Sum_probs=146.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-----CCcC-
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSLR- 542 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-----G~mD- 542 (891)
+.|.|-+|.+++.++-. +.-.|++...+|-|+..++.+.|...+.++++.+ |.++
T Consensus 217 vNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~I~~ 277 (714)
T PRK15400 217 TNGTSTANKIVGMYSAP-------------------AGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQ 277 (714)
T ss_pred eCchHHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCc
Confidence 34667788877766311 2235899999999999999999999888876432 3455
Q ss_pred ----HHHHHHHHHhhhhcCCccEEEEecCCccc--h----------hh---hh-----------------cCC-CCc---
Q psy852 543 ----GATLRQVMQQDETMGYIPFFVSTTLGTTS--C----------YR---KS-----------------QGI-EYA--- 582 (891)
Q Consensus 543 ----~~~Le~aI~~d~~~g~ip~~VvataGTT~--c----------~~---~l-----------------dGi-~~a--- 582 (891)
++.++++|++.... ..|..++.+..|.. | .. ++ .++ .++
T Consensus 278 ~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTYdG~~yd~~~I~~~~~~~~ilvDEAwgah~~F~p~~~~~sam~~ga~~~ 356 (714)
T PRK15400 278 SEFQHATIAKRVKETPNA-TWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEG 356 (714)
T ss_pred cccCHHHHHHHHHhCccc-cCccEEEEECCCCccEecCHHHHHHHhCCCCEEEEccchhhhccCcccCCcChhhcCCCCC
Confidence 89999999875432 34666666666654 1 10 01 112 234
Q ss_pred c--EEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 583 D--SFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 583 D--SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
| .++-|.||.|.+--.++.+.++.. +.. -..+..|+-+.+. .|. +.+ +.+|-.... .+-...-+
T Consensus 357 ~~i~vtQStHKtL~alTQaS~LHvkg~--vd~-~~~n~a~~m~~ST-SPs---Y~l-----~ASLD~a~~--~m~~~~G~ 422 (714)
T PRK15400 357 KVIYETQSTHKLLAAFSQASMIHVKGD--VNE-ETFNEAYMMHTTT-SPH---YGI-----VASTETAAA--MMKGNAGK 422 (714)
T ss_pred CceEEEEchhhcccchhHHhHHHHcCC--CCH-HHHHHHHHHHcCC-CcH---HHH-----HHHHHHHHH--HHHhhhhH
Confidence 4 888899998888777777766543 110 0111112111110 000 000 011111111 11111224
Q ss_pred HHHHHHHHHHHHHHHHhccCCC------cEEeCCC-----------------------------ceeEEEEEecCCcc--
Q psy852 661 KYIRRHCELAKLFEGKVRRDPR------FEISNDV-----------------------------RLGLVCFRLRSENN-- 703 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~------~eil~~~-----------------------------~~~iV~Fr~~~~~~-- 703 (891)
+.+++.++++..|.++|.++++ |+++.+. +..-|.+..++.+.
T Consensus 423 ~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g 502 (714)
T PRK15400 423 RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDG 502 (714)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCc
Confidence 5667778888888888877776 7776432 11222232222110
Q ss_pred --hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 704 --LIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 704 --~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++..--...+.+.|.+.|+. ....+.+.+ |.++...|++++++++++|.++-
T Consensus 503 ~~~~~Gipg~~v~~~L~e~gI~----~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~ 557 (714)
T PRK15400 503 TMSDFGIPASIVAKYLDEHGIV----VEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (714)
T ss_pred cccccCCCHHHHHHHHHHcCCE----EEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 00111234566778888987 555566666 87888999999999999998764
No 376
>PRK07505 hypothetical protein; Provisional
Probab=97.47 E-value=0.022 Score=65.64 Aligned_cols=260 Identities=8% Similarity=0.071 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH
Q psy852 444 RHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA 523 (891)
Q Consensus 444 ~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa 523 (891)
...++++.+++.+.. +.+ +.++|+++|..++..++...... + ...+|+.....|.|+....
T Consensus 92 ~~~~l~~~la~~~~~----~~~--~~~sG~~a~~~ai~~~~~~~~~~----------~---~~~vi~~~~~~H~s~~~~~ 152 (402)
T PRK07505 92 ILKDLEEALSELFGA----SVL--TFTSCSAAHLGILPLLASGHLTG----------G---VPPHMVFDKNAHASLNILK 152 (402)
T ss_pred HHHHHHHHHHHHhCC----CEE--EECChHHHHHHHHHHHHhcccCC----------C---CCCEEEEchhhhHhHHhhh
Confidence 345566666666543 333 34467889988887655422110 0 1235677779999875432
Q ss_pred H--HcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC------
Q psy852 524 M--MAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI------ 579 (891)
Q Consensus 524 ~--l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi------ 579 (891)
. ..+.+++.+|.. |+++|++++++.. ..++++ +..|+.. |.++ +|.+
T Consensus 153 ~~~~~~~~v~~~~~~-----d~~~l~~~~~~~~----~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~ 223 (402)
T PRK07505 153 GICADETEVETIDHN-----DLDALEDICKTNK----TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIY 223 (402)
T ss_pred hhhhcCCeEEEeCCC-----CHHHHHHHHhcCC----CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCc
Confidence 2 234577777763 8899998886531 222222 2334443 4331 1111
Q ss_pred ------------C--Ccc--EEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCccccccc-
Q psy852 580 ------------E--YAD--SFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRR- 641 (891)
Q Consensus 580 ------------~--~aD--SIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr- 641 (891)
. .-| -+..+..|.++.+ | |++++.+++.. +.+. .... ++...+..
T Consensus 224 g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g~~~~~~~~~~-~~~~~~~~~--------------~t~~~~~~~ 286 (402)
T PRK07505 224 GKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-GVIMLGDAEQI-ELILRYAGP--------------LAFSQSLNV 286 (402)
T ss_pred CCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-eEEEeCCHHHH-HHHHHhCCC--------------ceeCCCCCH
Confidence 0 012 2223677876654 2 45444343222 2221 1111 11111221
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 642 FRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 642 ~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+.......++..+..+.+.+..+...+..+.+...+... .....+.++.+.+.+ .....++.+.|.++|
T Consensus 287 ~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~~~~~------~~~~~~~~~~l~~~G 355 (402)
T PRK07505 287 AALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----QSGSFLPIRLIYIGD------EDTAIKAAKQLLDRG 355 (402)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCEEEEEeCC------HHHHHHHHHHHHHCC
Confidence 222334445554555555554444444443333222111 111223343333321 124567889999999
Q ss_pred cEEEeecc---ccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPAS---QEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 722 ~~~~s~s~---~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++..... ..+..++ |+++..+|++|++++++.|+++.
T Consensus 356 i~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l 397 (402)
T PRK07505 356 FYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEIL 397 (402)
T ss_pred CeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHH
Confidence 88543211 1233567 99999999999999999998775
No 377
>PRK08363 alanine aminotransferase; Validated
Probab=97.46 E-value=0.021 Score=65.49 Aligned_cols=251 Identities=8% Similarity=0.046 Sum_probs=138.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEe-cCCCC-CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKIL-EPDDK-NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~V-p~d~~-G~ 540 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-++.....++...|..++.+ +.+++ +.
T Consensus 95 ~i~--it~G~~~al~~~~~~~----~~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~ 153 (398)
T PRK08363 95 DVR--VTAAVTEALQLIFGAL----LD---------------PGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQ 153 (398)
T ss_pred hEE--EeCCHHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCc
Confidence 455 6788888887776543 11 12247777778888888888777777777 55544 57
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcC-------CCCc-cE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQG-------IEYA-DS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldG-------i~~a-DS 584 (891)
+|+++|++++.+.+ ..++++. -.|++. |.++ .++ +... .-
T Consensus 154 ~d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~v 229 (398)
T PRK08363 154 PDIDDIRKKITEKT----KAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPV 229 (398)
T ss_pred CCHHHHHhhCCcce----EEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcE
Confidence 99999999886532 1223322 356543 2221 111 1111 13
Q ss_pred E-EEcCcccC-CcccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 585 F-NVNVNKWL-LTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 585 I-s~d~HK~L-~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
| .-+.+|++ .....+|+++.+....+.+.+... ..+.. ..++ .+ .+.+.++...+ ..+-+
T Consensus 230 i~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~---------~~~~--~s----~~~q~~~~~~l~~~~~~l 294 (398)
T PRK08363 230 IVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLAR---------IRLC--PN----TPAQFAAIAGLTGPMDYL 294 (398)
T ss_pred EEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhc---------cccc--CC----hHHHHHHHHHHhCChHHH
Confidence 3 34789984 455788999884332111111100 00000 0000 11 12222333333 23445
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE-EecCCcchhhhhhHHHHH-HHHHhCCcEEEeeccc--cCCeE
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF-RLRSENNLIADQNNRKLL-EDINASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F-r~~~~~~~~~d~ln~~L~-~~L~~~G~~~~s~s~~--~g~~~ 735 (891)
++..++..+..+++.+.|++++++++. +|+.+.+.| ++.+.. .....++. ..|.+.|+.+..++.. .+...
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~----~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~ 369 (398)
T PRK08363 295 EEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGP----WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGH 369 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEeccCC----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCe
Confidence 566666777888899999888777754 455565555 564310 01233444 4457789876555433 23346
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ +++. .+++++++.++.|++.++
T Consensus 370 iRis~~--~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 370 FRLVFL--PPVEILEEAMDRFEEFMR 393 (398)
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHH
Confidence 6 8875 358889988888887653
No 378
>PRK06434 cystathionine gamma-lyase; Validated
Probab=97.46 E-value=0.0033 Score=72.21 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=83.3
Q ss_pred EEEEecCCccchhhhhcCCCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccc
Q psy852 561 FFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPL 638 (891)
Q Consensus 561 ~~VvataGTT~c~~~ldGi~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~ 638 (891)
++|.++.|+....+.++ .++|.+.+|+||++.+|-+ -|+++.++++....... ++. .+
T Consensus 179 lvVD~t~~s~~~~~pl~--~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~-----~~~---------~~---- 238 (384)
T PRK06434 179 VIVDATFASPYNQNPLD--LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE-----RRK---------TL---- 238 (384)
T ss_pred eEEECCCCCcccCCchh--cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH-----HHH---------hc----
Confidence 56788877665444443 3599999999999999886 66666666542221110 000 00
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----------eeEEEEEecCCcchhhh
Q psy852 639 SRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----------LGLVCFRLRSENNLIAD 707 (891)
Q Consensus 639 SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----------~~iV~Fr~~~~~~~~~d 707 (891)
+.....+..|.. ..|.+.+..++++..++|+.+++.|+++|.++-+.-|. .++++|.+++.
T Consensus 239 G~~~~~~~A~l~--~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~------ 310 (384)
T PRK06434 239 GSNPDPIQAYLA--LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSM------ 310 (384)
T ss_pred CCCCCHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCH------
Confidence 111223444544 45788889999999999999999999999875332221 46999999631
Q ss_pred hhHHHHHHHHH
Q psy852 708 QNNRKLLEDIN 718 (891)
Q Consensus 708 ~ln~~L~~~L~ 718 (891)
....++.+.|+
T Consensus 311 ~~~~~f~~~l~ 321 (384)
T PRK06434 311 EDVHKFIRNLE 321 (384)
T ss_pred HHHHHHHHhCC
Confidence 22345555554
No 379
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=97.45 E-value=0.009 Score=70.12 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=112.2
Q ss_pred EEEecccchH------HHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEec----CCccc------
Q psy852 508 MAYCSKEAHS------CVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTT----LGTTS------ 571 (891)
Q Consensus 508 vI~~S~~aH~------Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vvat----aGTT~------ 571 (891)
.|++|...|. ++...+...|++++.++++ +..|+++++++|+++++ ..+.+..+ .|.+.
T Consensus 162 eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~---lv~~~h~sN~~~~G~~~~~dl~~ 236 (454)
T TIGR00474 162 EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTA---LLLKVHTSNYRIVGFTEEVSIAE 236 (454)
T ss_pred EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCE---EEEEEccCcccccCCCCCCCHHH
Confidence 4788877763 3333444568888888764 35689999999976532 11222211 24321
Q ss_pred ----hhhh-----hcC------------C-----------CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCC
Q psy852 572 ----CYRK-----SQG------------I-----------EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPL 619 (891)
Q Consensus 572 ----c~~~-----ldG------------i-----------~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~ 619 (891)
|+++ +|. + .++|.+++|+|||+++|. +|+++.+++ .+. .+...+
T Consensus 237 I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~-~i~-~l~~~~- 312 (454)
T TIGR00474 237 LVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE-LIE-RLKKNP- 312 (454)
T ss_pred HHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHH-HHH-hhhhch-
Confidence 4332 221 0 348999999999999995 788888754 221 111111
Q ss_pred ccccCCCCCccccCCccccccccc-----------chHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--C
Q psy852 620 YLQHGHEGAIDYRHWGIPLSRRFR-----------SLKLWF-----VIRTYGLSGLQKYIRRHCELAKLFEGKVRRD--P 681 (891)
Q Consensus 620 Yl~~~~e~~~~~~~~ti~~SRr~~-----------aL~lW~-----~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~--~ 681 (891)
..|.++ .+..|. .+..-|..-+...+++..++|+.+++.|++. +
T Consensus 313 ------------------l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~ 374 (454)
T TIGR00474 313 ------------------LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGP 374 (454)
T ss_pred ------------------hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccC
Confidence 122111 111111 1112234444555667777888888888764 4
Q ss_pred Cc--EEeCC---------C--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecC-CCCHHH
Q psy852 682 RF--EISND---------V--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQE-RKRKDD 747 (891)
Q Consensus 682 ~~--eil~~---------~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~-~tT~ed 747 (891)
++ ++... | .+...+..+.+. +.....+.++|.+...-.+. ...... +.+.. ...++|
T Consensus 375 ~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-----~~~~~~l~~~lr~~~~~ii~--r~~~~~--~~ld~r~~~~~~ 445 (454)
T TIGR00474 375 GFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-----GLSAEKLEARLRELPPPIIG--RIEDDR--FLLDLRTLLEDE 445 (454)
T ss_pred CceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-----CCCHHHHHHHHhcCCCCEEE--EEECCE--EEEEeCcCCHHH
Confidence 44 33321 1 133444444332 22346777777754322222 222222 22222 347788
Q ss_pred HHHHHHHH
Q psy852 748 LAYKRSFF 755 (891)
Q Consensus 748 Id~li~~L 755 (891)
++.+++.|
T Consensus 446 ~~~~~~~~ 453 (454)
T TIGR00474 446 EELLIEAL 453 (454)
T ss_pred HHHHHHHh
Confidence 88887765
No 380
>PRK09105 putative aminotransferase; Provisional
Probab=97.45 E-value=0.014 Score=66.52 Aligned_cols=244 Identities=8% Similarity=-0.016 Sum_probs=140.3
Q ss_pred HHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEE
Q psy852 453 EGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKI 532 (891)
Q Consensus 453 ~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~ 532 (891)
++.+.-.++ +|+ ++.|+++++..++.+.- + +.-.|++++-.+.....++...|.+++.
T Consensus 88 a~~~~v~~e-~I~--it~Gs~~ai~~~~~~l~----~---------------~gd~Vli~~P~y~~~~~~~~~~g~~~~~ 145 (370)
T PRK09105 88 AAQEGLPAD-HVM--AYAGSSEPLNYAVLAFT----S---------------PTAGLVTADPTYEAGWRAADAQGAPVAK 145 (370)
T ss_pred HHHhCcChh-hEE--EcCChHHHHHHHHHHHc----C---------------CCCEEEEeCCChHHHHHHHHHcCCeEEE
Confidence 333433344 566 67899998887765431 1 1123666777788888888899999999
Q ss_pred ecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhh-----------hhcC----C----
Q psy852 533 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYR-----------KSQG----I---- 579 (891)
Q Consensus 533 Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~-----------~ldG----i---- 579 (891)
+|.++++.+|+++|++.. + +...++++ +-.|++. |.+ .+.+ +
T Consensus 146 v~~~~~~~~d~~~l~~~~-~----~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~ 220 (370)
T PRK09105 146 VPLRADGAHDVKAMLAAD-P----NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVA 220 (370)
T ss_pred ecCCCCCCCCHHHHHhcC-C----CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHh
Confidence 999888999999998762 1 11122332 3355554 100 0100 0
Q ss_pred CCccEEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHh
Q psy852 580 EYADSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 657 (891)
Q Consensus 580 ~~aDSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~ 657 (891)
..-+.|.+ +..|.++.| .-+|+++.... .+ +.+... .+ +. ...+.++.+...+...
T Consensus 221 ~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~-~i-~~l~~~-~~-------------~~------~~~~~~~aa~~~L~~~ 278 (370)
T PRK09105 221 QRKDLIVLRTFSKLYGMAGMRLGLAAARPD-LL-AKLARF-GH-------------NP------LPVPAAAAGLASLRDP 278 (370)
T ss_pred hCCCEEEEecccHhhcCCccceeeeecCHH-HH-HHHHhc-CC-------------CC------cCHHHHHHHHHHHhCH
Confidence 12245665 566766534 34777775322 22 211110 00 00 1112334444444333
Q ss_pred h-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 658 G-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
. +++..++..++.+++.+.|++. ++++. +++.+.+.+++. . ...++.+.|.++|+.+.... ......+
T Consensus 279 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~-~-------~~~~l~~~L~~~gI~v~~~~-~~~~~~~ 347 (370)
T PRK09105 279 KLVPQRRAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVK-R-------PAKAVADAMAKQGVFIGRSW-PIWPNWV 347 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCC-C-------CHHHHHHHHHHCCcEEecCC-CCCCCeE
Confidence 3 4445566677888899999885 66654 355666555553 1 24678888888898752221 1123456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++ +++++++++++|+++.
T Consensus 348 Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 348 RVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred EEEcC---CHHHHHHHHHHHHHHh
Confidence 8876 6788999999998653
No 381
>PRK05957 aspartate aminotransferase; Provisional
Probab=97.45 E-value=0.028 Score=64.46 Aligned_cols=246 Identities=12% Similarity=0.064 Sum_probs=133.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +++|+++++..++.+. .. +...|+++.-.+......+...|++++.+|.++++.+|
T Consensus 91 ~i~--~t~G~~~~l~~~~~~~----~~---------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d 149 (389)
T PRK05957 91 AIV--VTAGSNMAFMNAILAI----TD---------------PGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQ 149 (389)
T ss_pred eEE--EeCChHHHHHHHHHHh----cC---------------CCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcC
Confidence 455 6788888876665443 10 11236666555544445556778999999999889999
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------CCC------Ccc----E
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------GIE------YAD----S 584 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------Gi~------~aD----S 584 (891)
+++|++++++.++ .++++ +..|+.. |+++ .| +.. ..| .
T Consensus 150 ~~~l~~~i~~~~k----lv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T PRK05957 150 PEAIEQAITPKTR----AIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHT 225 (389)
T ss_pred HHHHHHhcCcCce----EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcE
Confidence 9999999875321 22222 2456543 3221 11 100 011 1
Q ss_pred E-EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHH
Q psy852 585 F-NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQ 660 (891)
Q Consensus 585 I-s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~ 660 (891)
| .-+..|.++.| .=+|++++.++ +.+.+.....+ .... ...+.+..+...+ +..-++
T Consensus 226 i~~~S~SK~~g~~GlRiG~~~~~~~--~~~~~~~~~~~-------------~~~~----~~~~~q~~~~~~l~~~~~~~~ 286 (389)
T PRK05957 226 ISLYSLSKAYGFASWRIGYMVIPIH--LLEAIKKIQDT-------------ILIC----PPVVSQYAALGALQVGKSYCQ 286 (389)
T ss_pred EEEecchhhccCccceeEEEecCHH--HHHHHHHHHhh-------------cccC----CCcHHHHHHHHHHhCChHHHH
Confidence 2 23355766433 22666665332 21211100000 0000 0113344444444 223356
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~l 736 (891)
+..+...+.++++.+.|++++++..+.+++.+ .+.+++.+ +....++.++|. +.|+.+..+... .+...+
T Consensus 287 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~i 360 (389)
T PRK05957 287 QHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNT------DLNDFELVKQLIREYRVAVIPGTTFGMKNGCYL 360 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCC------CCChHHHHHHHHHHCCEEEccchhhCCCCCCEE
Confidence 66677778888899999887764233445543 45566642 123567888886 478875554432 223456
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++.. +.+++++.++.|.+.+
T Consensus 361 Ris~~~~-~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 361 RIAYGAL-QKATAKEGIERLVQGL 383 (389)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHH
Confidence 887653 5777777777776655
No 382
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.45 E-value=0.0083 Score=70.03 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=119.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++... .+ +.-.|+++...|.... ..+...|++++.++.+ |+
T Consensus 84 ~~~sG~~Ai~~al~~l----l~---------------~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~ 139 (431)
T PRK08248 84 AVSSGQAAITYSILNI----AS---------------AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DP 139 (431)
T ss_pred EECCHHHHHHHHHHHH----hC---------------CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CH
Confidence 5678888888777553 11 1124667776665433 3344578888888763 88
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++. +..|... |+++ +|+. -++|-+..+.|||+++|
T Consensus 140 e~l~~ai~~~t----klV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~ 215 (431)
T PRK08248 140 ENFEAAITDKT----KALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGH 215 (431)
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCC
Confidence 99998886532 122222 1223332 3331 2221 36899999999999998
Q ss_pred c-ccEEEEEeCCccchhhhccCCCccccCCCCCccc----c-------------CCcccccccccchHHHHHHHHHHHhh
Q psy852 597 F-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDY----R-------------HWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 597 ~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~----~-------------~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
- .+|.+++.+....... .....++.... ..+.. . ......+-...+...|..++ |.+-
T Consensus 216 g~~~Gg~v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~t 291 (431)
T PRK08248 216 GTSIGGVIVDSGKFDWKG-SGKFPGLTEPD-PSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ--GLET 291 (431)
T ss_pred CCceEEEEEeCCcccccc-ccccccccCCc-cccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCc
Confidence 6 3777777544321000 00000010000 00000 0 00000111233445565544 7778
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------c-eeEEEEEecCCcchhhhhhHHHHHHHHH
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------R-LGLVCFRLRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+..++++..++|.++++.|+++|.++-+.-| . .++++|.+++. .....++++.|.
T Consensus 292 l~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l~ 364 (431)
T PRK08248 292 LHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGG-----VEAGKKLIDSVK 364 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC-----HHHHHHHHHhCC
Confidence 8899999999999999999999987643211 1 35999999643 123445555554
No 383
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=97.45 E-value=0.0084 Score=69.02 Aligned_cols=200 Identities=13% Similarity=0.125 Sum_probs=118.0
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AA 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa 523 (891)
+.+.+++.+.. +. ++ .++||++++..++.+. .+ +.-.|+++...|.+... .+
T Consensus 66 le~~la~l~g~-~~--~v--~~ssG~~Ai~~al~al----~~---------------~Gd~Vi~~~~~y~~t~~~~~~~~ 121 (390)
T PRK08133 66 FQERLAALEGA-EA--CV--ATASGMAAILAVVMAL----LQ---------------AGDHVVSSRSLFGSTVSLFEKIF 121 (390)
T ss_pred HHHHHHHHhCC-Cc--EE--EECCHHHHHHHHHHHH----hC---------------CCCEEEEccCcchhHHHHHHHHH
Confidence 33445555543 22 33 4678899988776553 11 11247777777765443 34
Q ss_pred HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcC---------
Q psy852 524 MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQG--------- 578 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldG--------- 578 (891)
...|++++.++.+ |+++++++|++.++ .+++ .+..|... |+++ +|.
T Consensus 122 ~~~G~~v~~vd~~-----d~~~l~~~i~~~tk----lV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~ 192 (390)
T PRK08133 122 ARFGIETTFVDLT-----DLDAWRAAVRPNTK----LFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQ 192 (390)
T ss_pred HHcCcEEEEECCC-----CHHHHHHhcCcCCe----EEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 4578888888874 78889888865321 2222 23344443 3331 222
Q ss_pred -C-CCccEEEEcCcccCCcccc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 579 -I-EYADSFNVNVNKWLLTAFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 579 -i-~~aDSIs~d~HK~L~~P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
+ -++|-+..++||+++++-. .|.+++.++..+.+.. .++.. . +-....+..|..++ |
T Consensus 193 pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~----~~~~~----------~----g~~~~~~~a~~~l~--g 252 (390)
T PRK08133 193 PLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRT----------A----GPTLSPFNAWVFLK--G 252 (390)
T ss_pred chhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHH----HHHHH----------h----CCCCCHHHHHHHHc--c
Confidence 1 2479999999999987754 4444444443322111 11110 0 11123345566554 5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEecC
Q psy852 656 LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRLRS 700 (891)
Q Consensus 656 ~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~ 700 (891)
.+.+..++++..++++++++.|++.|.++-+.-| -.++++|.+++
T Consensus 253 l~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 253 LETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 6688899999999999999999999887654222 13699999964
No 384
>PLN00175 aminotransferase family protein; Provisional
Probab=97.44 E-value=0.025 Score=65.61 Aligned_cols=246 Identities=11% Similarity=0.091 Sum_probs=137.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+|+ +|+|+++++..++.+. . .+.-.|++.+-.+......+...|.+++.+|.++ ++.+
T Consensus 117 ~I~--vt~G~~~al~~~~~~l----~---------------~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 175 (413)
T PLN00175 117 EVT--VTSGCTEAIAATILGL----I---------------NPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAV 175 (413)
T ss_pred CEE--EeCCHHHHHHHHHHHh----C---------------CCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCC
Confidence 355 6888899877665532 1 1122466667778888888888899999999874 5799
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC----------------CC---cc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI----------------EY---AD 583 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi----------------~~---aD 583 (891)
|+++|++++.+.+ ..++++ +..|.+. |.++ .|.+ .. -.
T Consensus 176 ~~~~l~~~~~~~~----k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~v 251 (413)
T PLN00175 176 PEDELKAAFTSKT----RAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERT 251 (413)
T ss_pred CHHHHHHhcCcCc----eEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcE
Confidence 9999999986532 122332 3345543 2221 1110 00 01
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~ 660 (891)
-..-+..|.++.| .-+|+++.... .+ ..+.....+ ..+ ....+.++++.+.+. ..-++
T Consensus 252 i~i~SfSK~~~~~G~RiG~~v~~~~-l~-~~l~~~~~~-----------~~~------~~s~~~Q~a~~~~l~~~~~~~~ 312 (413)
T PLN00175 252 VTMNSLGKTFSLTGWKIGWAIAPPH-LT-WGVRQAHSF-----------LTF------ATATPMQWAAVAALRAPESYYE 312 (413)
T ss_pred EEEecchhhccCcchheeeeEeCHH-HH-HHHHHHHhh-----------ccC------CCCHHHHHHHHHHHhCCHHHHH
Confidence 1223556766544 34565554322 11 111100000 000 112234455555552 23355
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc-----cCCe
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ-----EQND 734 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~-----~g~~ 734 (891)
+..++..+.++.+.+.|++. ++++..+.....+.+++.+.+ . ....++.+.|. +.|+.+.-++.. .+..
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~~~~---~-~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~ 387 (413)
T PLN00175 313 ELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHTPFG---F-ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKN 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEeccccC---C-CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCC
Confidence 66667777888899999886 577654333334666654321 0 12457777775 569876655432 1234
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+ +++.. +++++++.++.|++.+
T Consensus 388 ~iRls~~~--~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 388 LVRFAFCK--DEETLRAAVERMKTKL 411 (413)
T ss_pred EEEEEEcC--CHHHHHHHHHHHHHHH
Confidence 56 88763 6899999998887654
No 385
>PRK06348 aspartate aminotransferase; Provisional
Probab=97.43 E-value=0.0035 Score=71.60 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=67.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|++..-++.....++...+.+++.++.+ +++.+|+++|++.+++.. -+|.++.-+|.||.+-+ +++|.
T Consensus 115 ~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~s~~~~~~l~ 188 (384)
T PRK06348 115 EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKT------KAIILNSPNNPTGAVFSKETLEEIA 188 (384)
T ss_pred EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCc------cEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 36777777777777777777788888874 345699999999886432 24444567899999865 77888
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|.+|-+|+.+.
T Consensus 189 ~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 189 KIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred HHHHHCCeEEEEecccccce
Confidence 88999999999999996543
No 386
>PRK09082 methionine aminotransferase; Validated
Probab=97.42 E-value=0.01 Score=67.93 Aligned_cols=243 Identities=9% Similarity=0.006 Sum_probs=132.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G~m 541 (891)
+++ +|+|+++++..++.+.. .+...|++..-.|.+...++...|.+++.+|.+ +++.+
T Consensus 93 ~i~--~t~G~~~al~~~~~~~~-------------------~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (386)
T PRK09082 93 EIT--VTAGATEALFAAILALV-------------------RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRV 151 (386)
T ss_pred cEE--EeCCHHHHHHHHHHHHc-------------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccC
Confidence 455 68899998887765421 122357788889999999998889999999996 46889
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC-----------CCCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG-----------IEYA 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG-----------i~~a 582 (891)
|+++|++++++.. ..++++ +-.|++. |.++ .++ ...-
T Consensus 152 d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~ 227 (386)
T PRK09082 152 DWQRFAAAISPRT----RLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRER 227 (386)
T ss_pred CHHHHHHhcCccc----eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCc
Confidence 9999999986421 223332 3456542 3221 011 0001
Q ss_pred cEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhH
Q psy852 583 DSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGL 659 (891)
Q Consensus 583 DSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~ 659 (891)
.-..-++.|.++.|- -+|+++.. ++.+ ..+.....+ ..+ ....+.++++...+ +..-+
T Consensus 228 ~i~~~S~SK~~~~~G~RiG~iv~~-~~l~-~~~~~~~~~-----------~~~------~~~~~~q~~~~~~l~~~~~~~ 288 (386)
T PRK09082 228 AFVVSSFGKTYHVTGWKVGYCVAP-AALS-AEFRKVHQY-----------NTF------TVNTPAQLALADYLRAEPEHY 288 (386)
T ss_pred EEEEeechhhccchhhhhhhhhCC-HHHH-HHHHHHHhh-----------hcC------CCChHHHHHHHHHHhCChHHH
Confidence 122234566655442 24555432 1111 111100000 001 11122333333333 22334
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccc----cCC
Q psy852 660 QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQ----EQN 733 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~----~g~ 733 (891)
++..+...++.+++.+.|++. ++++. +++.+ .++++++... +....++.+.| .+.|+.+.-+... .+.
T Consensus 289 ~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~ 362 (386)
T PRK09082 289 LELPAFYQAKRDRFRAALANS-RFKLL-PCEGTYFQLVDYSAIS----DLDDVEFCQWLTREHGVAAIPLSVFYADPFPH 362 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCccc-CCCeeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCC
Confidence 445555567778888888874 56654 34444 4556764210 11345677776 4568775544432 123
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~e 757 (891)
..+ +++.. +++++++.++.|++
T Consensus 363 ~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 363 RLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred CEEEEEecC--CHHHHHHHHHHHhh
Confidence 456 88764 67888888877764
No 387
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.018 Score=66.42 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=151.0
Q ss_pred cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-
Q psy852 458 RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD- 536 (891)
Q Consensus 458 ~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d- 536 (891)
-.+.-+|+ +|.|++++++.++.+.-+ +.-.|++.+=.-.+......+.|++++.+|++
T Consensus 86 ~~~~~eii--vt~Ga~~al~~~~~a~~~-------------------pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~ 144 (393)
T COG0436 86 VDPEEEII--VTAGAKEALFLAFLALLN-------------------PGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDE 144 (393)
T ss_pred CCCCCeEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCc
Confidence 34444577 789999999988877422 11125555555556666677899999999975
Q ss_pred --CCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC------CC
Q psy852 537 --DKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG------IE 580 (891)
Q Consensus 537 --~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG------i~ 580 (891)
.+.++|++.|++++.+.++ .++++ +-.|++. |.+| .+| ++
T Consensus 145 ~~~~f~~d~~~l~~~i~~ktk----~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~ 220 (393)
T COG0436 145 EENGFKPDLEDLEAAITPKTK----AIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILE 220 (393)
T ss_pred CccCCcCCHHHHHhhcCccce----EEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhh
Confidence 4799999999999998433 44454 3466665 2221 222 11
Q ss_pred Cc----cEEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH
Q psy852 581 YA----DSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 581 ~a----DSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
.. ..|++ +..|..+.+ .=+|+++..++..+......+ .|+ .-+ ...+.+.++...+
T Consensus 221 ~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~-~~~--------------~~~---~~~~~Q~aa~~aL 282 (393)
T COG0436 221 LAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLK-SYL--------------TSC---APTPAQYAAIAAL 282 (393)
T ss_pred cCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHH-Hhc--------------ccC---CCHHHHHHHHHHh
Confidence 12 26666 578877765 447777766433222111000 010 001 1123444555555
Q ss_pred HH----hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEE-EEecCCcchhhhhhHHHHHHHHHh-CCcEEEeec
Q psy852 655 GL----SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVC-FRLRSENNLIADQNNRKLLEDINA-SGRLHMVPA 728 (891)
Q Consensus 655 G~----~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~-Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s 728 (891)
.. ..++.+.+...+.++.+.+.|.+.+++.+..+|+-.... .+++.. .....+...|.+ .|++++-++
T Consensus 283 ~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~------~d~~~f~~~Ll~~~gV~v~PG~ 356 (393)
T COG0436 283 NGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL------LDSEEFAKKLLEEAGVAVVPGS 356 (393)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC------CCHHHHHHHHHHhCCEEEeccc
Confidence 42 345555567788899999999999999998866554443 444321 345677777766 466654444
Q ss_pred ccc---CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 729 SQE---QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 729 ~~~---g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
... +.+.+ +++... .+++++.++.|.+..
T Consensus 357 ~Fg~~~g~~~vRis~~~~--~~~l~~a~~rl~~~~ 389 (393)
T COG0436 357 GFGEPPGEGYVRLSLATS--EETLEEALRRLARFL 389 (393)
T ss_pred ccCCCCCCCeEEEEEecC--HHHHHHHHHHHHHHH
Confidence 332 33456 776544 388888888887665
No 388
>PLN02368 alanine transaminase
Probab=97.41 E-value=0.0032 Score=72.90 Aligned_cols=93 Identities=13% Similarity=-0.040 Sum_probs=69.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~ 219 (891)
|++..-........+...|.+++.|+++++ +.+|+++|++.++....++..+-+++.+--+|-||.+-+. ++|++
T Consensus 158 Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~ 237 (407)
T PLN02368 158 VLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILK 237 (407)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHH
Confidence 555555666666667777789999998753 6899999999997643333335566676779999999555 56677
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|-.|-+|+.+
T Consensus 238 ~a~~~~~~II~DE~Y~~l 255 (407)
T PLN02368 238 FCYQERLVLLGDEVYQQN 255 (407)
T ss_pred HHHHcCCEEEEEcccccc
Confidence 889999999999999543
No 389
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.41 E-value=0.014 Score=68.34 Aligned_cols=218 Identities=14% Similarity=0.080 Sum_probs=115.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHH----HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAM----MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~----l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++.+. .+ +.-.|+++...|.+....+. -.|++++.++ |. -|+
T Consensus 89 ~~sSG~aAi~~al~al----l~---------------~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~ 145 (436)
T PRK07812 89 LLASGQAAETFAILNL----AG---------------AGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDL 145 (436)
T ss_pred EEccHHHHHHHHHHHH----hC---------------CCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCH
Confidence 4567788877776442 11 11236666667766554432 2466777765 22 288
Q ss_pred HHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++++++|++.++ .+++ .+..|... |+++ +|+. .++|-+..++|||++++
T Consensus 146 e~l~~ai~~~tk----lV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~ 221 (436)
T PRK07812 146 DAWRAAVRPNTK----AFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGH 221 (436)
T ss_pred HHHHHhCCCCCe----EEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCC
Confidence 888888875321 1221 12234443 3331 3331 35899999999999877
Q ss_pred cc-cEEEEEeCCc-cchh-----hhccCCCccccCCCC--C--c--ccc-CCcccccccccchHHHHHHHHHHHhhHHHH
Q psy852 597 FD-SSCLWVADRY-KLTS-----ALVVDPLYLQHGHEG--A--I--DYR-HWGIPLSRRFRSLKLWFVIRTYGLSGLQKY 662 (891)
Q Consensus 597 ~g-~G~llvR~~~-~L~~-----~l~~~~~Yl~~~~e~--~--~--~~~-~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~ 662 (891)
-+ .|.+++.+.. .... ..+.++.|....... . + ... .+.-..+-.......|..+ .|...+..+
T Consensus 222 G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~--rgl~tL~~R 299 (436)
T PRK07812 222 GTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIA--QGLETLSLR 299 (436)
T ss_pred CCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHh--cCcCcHHHH
Confidence 33 5666664332 1100 001112221100000 0 0 000 0000001112234556443 488889999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+++..++|.++++.|+++|.++-+.-| -.++++|.+++. .....++++.|..
T Consensus 300 ~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~-----~~~~~~f~~~l~l 369 (436)
T PRK07812 300 IERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGG-----VEAGKAFVNALTL 369 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC-----HHHHHHHHHhCCc
Confidence 999999999999999999987533211 136999999742 1224455666543
No 390
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=97.41 E-value=0.0029 Score=71.97 Aligned_cols=272 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred CccccccCCCCCCHH-HHHHHHHHHhcCCCC-------CccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q psy852 17 HPRFHAYFPSGNSYP-SVLADMLSDAIGCIG-------FSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATT 88 (891)
Q Consensus 17 ~p~~~~~~~~~~~~~-~~~~~~l~~~~n~~~-------~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~t 88 (891)
|...+.|-+.+..+| .++..+-..++|.++ .+| -+|.+.++-.++.+.|.+|++.|++. .-+|
T Consensus 2 ~~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisH-Rs~~F~~i~~~~~~~Lr~Ll~~P~~y-------~Vlf- 72 (364)
T PRK12462 2 HRNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSH-RSSWFSSLLAQAEADLRDLLGIPDEY-------GVVF- 72 (364)
T ss_pred CcccceecCCCcCCCHHHHHHHHHHHhcccccCcccccccc-ccHHHHHHHHHHHHHHHHHhCCCCCC-------eEEE-
Q ss_pred CCCccccccccCCCCCCCCcccchhHHHHHHHHHHHHhccccCCccccccccCCe-EEEecCCCChHHHHHHHHcCCeEE
Q psy852 89 PNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKL-MAYCSKEAHSCVEKAAMMAFVRLK 167 (891)
Q Consensus 89 p~~~~~~~~~~~t~~~~~~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~-~v~~S~~~H~Sv~kaa~~~~~~v~ 167 (891)
..+|||.+-.+..+++..... ..+ ++.+..-.+-....+.+++..++.
T Consensus 73 -------------------l~GggT~~~ea~~~Nll~~g~------------~~~~~~~tG~fg~r~~~ea~~~g~v~~~ 121 (364)
T PRK12462 73 -------------------LQGGSSLQFSMIPMNFSRPGA------------AAPEYVTTGYWSRKAIGEASRVAAMRVV 121 (364)
T ss_pred -------------------EeccHHHHHHHHHHHcCCCCC------------cEEEEEeCCHHHHHHHHHHHhcCCceEe
Q ss_pred EE--ecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCC
Q psy852 168 IL--EPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFR 245 (891)
Q Consensus 168 ~V--~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~ 245 (891)
.. +.+.....+++.+ .+.++.+ +|..|.-.|.+|+..| ++.+.++..+.||+.=
T Consensus 122 ~~~~~~~~~~~p~~~~~--~~~~d~~------~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS----------- 177 (364)
T PRK12462 122 WDGAASGYRTLPSLAEL--DWDARAP------FRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSS----------- 177 (364)
T ss_pred cCcCCCCCCcCCCHHHh--ccCCCCc------EEEEccCCCCceEecC-----cccccCCCeEEEEcCc-----------
Q ss_pred ccCCCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhcccccccccccccccc
Q psy852 246 PFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQS 325 (891)
Q Consensus 246 ~~~~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (891)
+..+..+++...
T Consensus 178 ----------------------~~~s~pid~~~~---------------------------------------------- 189 (364)
T PRK12462 178 ----------------------DFMSRPFDVEAY---------------------------------------------- 189 (364)
T ss_pred ----------------------hhhCCCCChHHc----------------------------------------------
Q ss_pred ccccccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCC
Q psy852 326 YRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHE 405 (891)
Q Consensus 326 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~ 405 (891)
|-+.....|.++ |-|.+++++|++ .+...-...|.|+...
T Consensus 190 ------------------------------------dvi~agsQKnlg-P~Gltvvivs~~-al~~~~~~~p~~ldy~-- 229 (364)
T PRK12462 190 ------------------------------------GMVYAHAQKNLG-PAGVTVAIIRRA-LLERVPDTLPPMLDFR-- 229 (364)
T ss_pred ------------------------------------cEEEeeccccCC-CCceEEEEECHH-HHhhccccCCchhhHH--
Q ss_pred CcccccccccCCCCC-hhHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHhhccCCcc
Q psy852 406 GAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLS--GLQKYIRRHCELAKLFEGKVRRDPRF 462 (891)
Q Consensus 406 ~~~~~~~~~~~~sr~-~~~l~~w~~l~~~g~~--G~~~ii~~~lelAr~l~~~L~~~~~~ 462 (891)
..........+-+ +....+=.+++++-.+ |+..+.++..+.|+.+++.|.+.++|
T Consensus 230 --~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~ 287 (364)
T PRK12462 230 --THVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV 287 (364)
T ss_pred --HHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc
No 391
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0026 Score=73.33 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=104.7
Q ss_pred CHHH-HHHHHHHHhcCCCCCccccChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC-ccccccccCCCCCCC
Q psy852 29 SYPS-VLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPND-IDMNIEDYMTPANQP 106 (891)
Q Consensus 29 ~~~~-~~~~~l~~~~n~~~~~~~~~p~~~~~E~~~~~~l~~l~g~~~~~~~~~~~~~g~~tp~~-~~~~~~~~~t~~~~~ 106 (891)
..|. +...+...+.+.+. .+..+....+|-+.+.+++.+-.|++.. |++ ++
T Consensus 41 ~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~-------------~~~eii------------- 93 (393)
T COG0436 41 PTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVD-------------PEEEII------------- 93 (393)
T ss_pred CCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCC-------------CCCeEE-------------
Confidence 3344 44444444444332 3334555678889999999999886533 111 21
Q ss_pred CcccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEEEEecC---CCCcccHHHHH
Q psy852 107 QSLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD---DKNSLRGATLR 183 (891)
Q Consensus 107 ~~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d---~~g~id~~~L~ 183 (891)
.|.|++. .....+ .+-... ++ -|++.+=.-.+......+.|.+++.|+++ .++.+|+++|+
T Consensus 94 -vt~Ga~~-al~~~~-~a~~~p------------GD-eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~ 157 (393)
T COG0436 94 -VTAGAKE-ALFLAF-LALLNP------------GD-EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLE 157 (393)
T ss_pred -EeCCHHH-HHHHHH-HHhcCC------------CC-EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHH
Confidence 2446543 222221 111111 11 14443333334444447788899999975 37899999999
Q ss_pred HHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHHcCCceeeeccccCCc
Q psy852 184 QVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 184 ~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+++.+.+ -+|+++.-+|.||++ +.+++|+++|++++++|..|-+|.++.
T Consensus 158 ~~i~~kt------k~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~ 209 (393)
T COG0436 158 AAITPKT------KAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELV 209 (393)
T ss_pred hhcCccc------eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcc
Confidence 9999854 499999999999999 457788899999999999999996544
No 392
>PRK08068 transaminase; Reviewed
Probab=97.39 E-value=0.0033 Score=71.92 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=68.4
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
.|++..-++.....++...|.+++.|+++++ ..+|+++|++.+.+. +-+|.++-.+|.||.+-+.+ +|+
T Consensus 120 ~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPTG~~~s~~~~~~l~ 193 (389)
T PRK08068 120 TILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNNPTGAVATKAFFEETV 193 (389)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCCcCCHHHHHHHH
Confidence 3677777777777777777889999999753 468999999888543 23566666789999998874 777
Q ss_pred HHHHHcCCceeeeccccC
Q psy852 219 PVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG 236 (891)
++|+++++++.+|-||+.
T Consensus 194 ~la~~~~~~ii~Deay~~ 211 (389)
T PRK08068 194 AFAKKHNIGVVHDFAYGA 211 (389)
T ss_pred HHHHHcCeEEEEehhhhh
Confidence 789999999999999954
No 393
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=97.39 E-value=0.025 Score=65.17 Aligned_cols=255 Identities=9% Similarity=0.045 Sum_probs=139.5
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +++|+++++..++.+... +.-.|+++.-.+.....++...|++++.+|.+ .++.
T Consensus 98 ~ii--~t~G~t~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 156 (403)
T TIGR01265 98 DVV--LTSGCSQAIEICIEALAN-------------------PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWE 156 (403)
T ss_pred HEE--EecChHHHHHHHHHHhCC-------------------CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCc
Confidence 455 688999998888776421 11236666667777777777888999988874 3578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEE--EecCCccc-----------hhhh-----hcCC---------C---------CccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFV--STTLGTTS-----------CYRK-----SQGI---------E---------YADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~V--vataGTT~-----------c~~~-----ldGi---------~---------~aDS 584 (891)
+|++++++++.+.+. ..++. .+..|++. |.++ +|.. . ...-
T Consensus 157 ~d~~~l~~~~~~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~v 233 (403)
T TIGR01265 157 IDLDGLEALADEKTV---AIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPV 233 (403)
T ss_pred cCHHHHHHHhCcCcc---EEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcE
Confidence 999999998865321 11221 23466663 3221 1110 0 0012
Q ss_pred E-EEcCcccCCcc-cccEEEEEeCC-ccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHH---HHh
Q psy852 585 F-NVNVNKWLLTA-FDSSCLWVADR-YKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY---GLS 657 (891)
Q Consensus 585 I-s~d~HK~L~~P-~g~G~llvR~~-~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l---G~~ 657 (891)
| .-+..|.++.| .-+|+++..+. ..+.+.+... ..+.. .... ...+.+-+....+ ...
T Consensus 234 i~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~q~~~~~~l~~~~~~ 298 (403)
T TIGR01265 234 LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-----------RILG----PATIVQGALPDILENTPQE 298 (403)
T ss_pred EEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-----------hhcC----CChHHHHHHHHHHHhChHH
Confidence 2 23678876666 45787777543 1111100000 00000 0000 0112222222222 223
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccccCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~~g~~~l 736 (891)
-+++..+...+.++++.+.|+..+++.+..+...+-+.++++....... ....++...| .+.|+.+..+........+
T Consensus 299 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~i 377 (403)
T TIGR01265 299 FFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEI-KDDVDFCEKLVREESVICLPGSAFGLPNWV 377 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCC-CCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 3455566677778889999988877776555556677777753210000 1245677775 5678876655544334556
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++.. .++.+++.++.|.+++
T Consensus 378 Ris~~~--~~~~l~~~l~~l~~~~ 399 (403)
T TIGR01265 378 RITITV--PESMLEEACSRIKEFC 399 (403)
T ss_pred EEEecC--CHHHHHHHHHHHHHHH
Confidence 88774 4677777777776554
No 394
>PRK09265 aminotransferase AlaT; Validated
Probab=97.39 E-value=0.0024 Score=73.41 Aligned_cols=88 Identities=10% Similarity=-0.005 Sum_probs=71.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~ 218 (891)
.|+++.-+|.....++...+.+++.+++|. ++.+|+++|++.+... +-+|+++..+|.||.+-+ +++|+
T Consensus 121 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~ 194 (404)
T PRK09265 121 EVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIV 194 (404)
T ss_pred EEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHH
Confidence 377788889888888876677888888764 4679999999987543 336666678999999988 88999
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++|++|.+|-+|+.+
T Consensus 195 ~~a~~~~~~ii~De~y~~~ 213 (404)
T PRK09265 195 EIARQHNLIIFADEIYDKI 213 (404)
T ss_pred HHHHHCCCEEEEehhhhhc
Confidence 9999999999999999643
No 395
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=97.39 E-value=0.0091 Score=67.06 Aligned_cols=80 Identities=16% Similarity=-0.013 Sum_probs=63.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-++......+...|.+++.|+.++++.+|+++|++ .. .+|+++..+|.||.+-|.+++.++++.+
T Consensus 104 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~------~~v~~~~P~NPtG~~~~~~~~~~l~~~~ 173 (353)
T PRK05387 104 LLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PN------GGIIFPNPNAPTGIALPLAEIERILAAN 173 (353)
T ss_pred EEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cC------CEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 6665555544444456778899999999889999999873 11 2566777899999999999999999876
Q ss_pred -CCceeeeccc
Q psy852 225 -DVWLHVDGAY 234 (891)
Q Consensus 225 -~~~lHvDaA~ 234 (891)
++++.+|-+|
T Consensus 174 ~~~~livDe~y 184 (353)
T PRK05387 174 PDSVVVIDEAY 184 (353)
T ss_pred CCcEEEEeCcc
Confidence 8889999988
No 396
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0033 Score=68.90 Aligned_cols=175 Identities=16% Similarity=0.099 Sum_probs=119.8
Q ss_pred cCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccCCC
Q psy852 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250 (891)
Q Consensus 171 ~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~~g 250 (891)
-|-.+.+.++++++.++.++ .+|..+..+--||-.-++.+|.++++++|+.+--|-|+.-..+
T Consensus 148 ~~~~~~~~P~~~~~~~~dd~------AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGav----------- 210 (407)
T COG3844 148 YDLEGVIAPRALEEAITDDV------AVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAV----------- 210 (407)
T ss_pred ccceeeeChHHHHHhhccce------EEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCc-----------
Confidence 45678888999999999885 6999999999999999999999999999877666665511000
Q ss_pred CcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccccc
Q psy852 251 KTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAI 330 (891)
Q Consensus 251 ~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (891)
T Consensus 211 -------------------------------------------------------------------------------- 210 (407)
T COG3844 211 -------------------------------------------------------------------------------- 210 (407)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCC-ccCCceEEEEeccccchhhcccCccccCCCCCCccc
Q psy852 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAID 409 (891)
Q Consensus 331 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~-~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~~ 409 (891)
.+-|| -..+|.-.-..||++. +|-+.+.+++.++..-. ....-..+..+... +.
T Consensus 211 -p~~Lh---------------------~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~-~~~~lsgW~gha~p--f~ 265 (407)
T COG3844 211 -PVDLH---------------------AAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRER-SWPPLSGWWGHARP--FA 265 (407)
T ss_pred -ceeec---------------------ccCCCeeeeeeceeccCCCCCceeEEeccccccc-cccccccccCCCCc--ch
Confidence 11122 1147899999999965 58888888887653221 12222334433211 11
Q ss_pred cc-cc-ccCCCCCh--------hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccC-C--ccccccC
Q psy852 410 YR-HW-GIPLSRRF--------RSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD-P--RFEISND 467 (891)
Q Consensus 410 ~~-~~-~~~~sr~~--------~~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~-~--~~eVv~~ 467 (891)
.. .| ..+|-|+| ...++-.+|..++.-++.+..++.+.++.||.+++++. + ++++++|
T Consensus 266 m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tP 336 (407)
T COG3844 266 MEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTP 336 (407)
T ss_pred hhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEecc
Confidence 10 11 22344443 23456677888889999999999999999999999763 3 5777765
No 397
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=97.38 E-value=0.041 Score=65.57 Aligned_cols=164 Identities=11% Similarity=0.055 Sum_probs=87.5
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ -|.++.= ++.|+++++++ +.+.+....... .. -....|..+ -+..+...-++|+.+-.+
T Consensus 322 PDivtl--gK~lggG~~PigAv~~~~~--i~d~~~~~~~~~-----~~-~~h~~T~~g-nPl~~Aaala~Le~i~~~--- 387 (504)
T PLN02760 322 PDLVSL--AKALSSAYMPIGAVLVSPE--ISDVIHSQSNKL-----GS-FAHGFTYSG-HPVSCAVALEALKIYKER--- 387 (504)
T ss_pred CcEEEe--cccccCCccccceEeecHH--HHhhhhcccccc-----cC-cccCCCCCC-CHHHHHHHHHHHHHHHhC---
Confidence 686555 7887653 25677888754 223222110000 00 001112221 122223333444444443
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCc-e-eEEEEEecCCcc--h---hhhhhHHHHHHHHHhCCcEEEeeccccCC
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVR-L-GLVCFRLRSENN--L---IADQNNRKLLEDINASGRLHMVPASQEQN 733 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~-~iV~Fr~~~~~~--~---~~d~ln~~L~~~L~~~G~~~~s~s~~~g~ 733 (891)
+.+++..++.++|.+.|+++....++.+.. . .++.+.+..... + .-..+...+.+.+.++|++... .+
T Consensus 388 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----~g- 462 (504)
T PLN02760 388 NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRV----AG- 462 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEe----cC-
Confidence 456677778888888887653332222211 1 355555533210 0 0012456788889999987432 12
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRMLGLVCF 764 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~~~~~~ 764 (891)
..+ +++...+|++|||++++++++.+..+++
T Consensus 463 ~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 463 DNIMMSPPLIITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345 7777779999999999999988865543
No 398
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=97.37 E-value=0.017 Score=66.47 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=102.3
Q ss_pred EEEecccchHHHHHHH-HH---cCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA-MM---AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa-~l---~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...+.+..... .+ .+++++.++. .|+++|+++|+++++ .+++. +..|+.. |
T Consensus 102 ~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~tk----lV~ie~p~NPtg~~~dl~~I~~la 172 (388)
T PRK07811 102 HIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPRTK----LIWVETPTNPLLSITDIAALAELA 172 (388)
T ss_pred EEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcCCe----EEEEECCCCCcceecCHHHHHHHH
Confidence 3667777776554433 22 3566666654 488888888865321 22221 1223332 3
Q ss_pred hhh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|. + .++|.+..+.+||+++|-+ .|+++++++.... .+. +++.. .
T Consensus 173 ~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~-~~~----~~~~~---------~ 238 (388)
T PRK07811 173 HDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDE-AFA----FLQNG---------A 238 (388)
T ss_pred HHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHH-HHH----HHHHh---------c
Confidence 321 111 1 3589999999999998865 5777777664322 111 11100 0
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-----------------eeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-----------------LGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-----------------~~iV~Fr 697 (891)
+.....+..|..++ +.+.+..++++..++++.+.+.|+++|.++-+.-|. .++++|.
T Consensus 239 ----g~~~s~~~a~l~~~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~ 312 (388)
T PRK07811 239 ----GAVPGPFDAYLTLR--GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVR 312 (388)
T ss_pred ----CCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEE
Confidence 00112233454444 455677888999999999999999999876432121 3699999
Q ss_pred ecCCcchhhhhhHHHHHHHHHh
Q psy852 698 LRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+++. .....++++.|.-
T Consensus 313 ~~~~-----~~~~~~f~~~l~~ 329 (388)
T PRK07811 313 LAGG-----EEAARDFCARTKV 329 (388)
T ss_pred eCCC-----HHHHHHHHHhCCc
Confidence 9742 1223455555543
No 399
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=97.37 E-value=0.0078 Score=69.21 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=113.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHH---cCceEEEecCCCCCCcCHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMM---AFVRLKILEPDDKNSLRGA 544 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l---~gv~v~~Vp~d~~G~mD~~ 544 (891)
++++|+.++..++.+. .+ +...|+++...|.+....+.. .+++++.++. |++
T Consensus 73 ~~~sG~~Ai~~~l~~l----l~---------------~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~------d~~ 127 (385)
T PRK08574 73 AFNSGMAAISTLFFSL----LK---------------AGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP------STE 127 (385)
T ss_pred EeCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC------CHH
Confidence 3567888888776543 11 122477778888877666532 3566655432 577
Q ss_pred HHHHHHHh-hhhcCCccEEEEecCC----ccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCc
Q psy852 545 TLRQVMQQ-DETMGYIPFFVSTTLG----TTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLT 595 (891)
Q Consensus 545 ~Le~aI~~-d~~~g~ip~~VvataG----TT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~ 595 (891)
+|+++|++ .+ -++++.+.+ ... |+++ +|. + .++|.+..|.|||+++
T Consensus 128 ~l~~~i~~~~t-----klV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g 202 (385)
T PRK08574 128 DIIEAIKEGRT-----KLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAG 202 (385)
T ss_pred HHHHhcCccCc-----eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecC
Confidence 88887764 21 122222222 221 3321 121 1 2489999999999999
Q ss_pred ccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy852 596 AFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673 (891)
Q Consensus 596 P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L 673 (891)
|-+ .|++++.+++......... .+ + +-....+..|..++ |.+-+..++++..++|+++
T Consensus 203 ~~d~~gG~vi~~~~~~~~~~~~~~-~~-------------~----g~~~~p~~a~l~l~--~l~tL~~R~~~~~~na~~l 262 (385)
T PRK08574 203 HNDVVGGVAVAWSGEFLEELWEWR-RR-------------L----GTIMQPFEAYLVLR--GLKTLEVRFERQCRNAMAI 262 (385)
T ss_pred CCCceeEEEEECcHHHHHHHHHHH-Hh-------------c----CCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHH
Confidence 876 3667776654332211000 00 0 11122233454444 6677888999999999999
Q ss_pred HHHhccCCCcEEeC-C-----C-------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 674 EGKVRRDPRFEISN-D-----V-------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 674 ~~~L~~~~~~eil~-~-----~-------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
.+.|++.|.++-+. | | -.++++|.+++. .+...++.+.|+-
T Consensus 263 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~-----~~~~~~~~~~l~l 322 (385)
T PRK08574 263 AEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGG-----RDAVLKFLRSLKL 322 (385)
T ss_pred HHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCC-----HHHHHHHHHcCCc
Confidence 99999988875321 1 1 135999999742 2234455555543
No 400
>PRK07050 cystathionine beta-lyase; Provisional
Probab=97.37 E-value=0.005 Score=70.97 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=118.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHH----HHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEK----AAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~K----aa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++||++++..++.+. .+ +.-.|+++...|.+... .+...|++++.++.+ +.
T Consensus 85 ~~~sgt~Ai~~~l~al----~~---------------~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~ 140 (394)
T PRK07050 85 LQPSGLAAISLVYFGL----VK---------------AGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IG 140 (394)
T ss_pred EeccHHHHHHHHHHHH----hC---------------CCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CH
Confidence 5678999999887664 11 12247777777766443 345578888877653 45
Q ss_pred HHHHHHHHhhhhcCCccEEEEecC---Cccc--------hhhh-----hcCC-----------CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTL---GTTS--------CYRK-----SQGI-----------EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vvata---GTT~--------c~~~-----ldGi-----------~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++.+.. |... |+++ +|+. .++|....+.+|++++.
T Consensus 141 ~~l~~~i~~~t----klV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~ 216 (394)
T PRK07050 141 AGIADLIQPNT----RLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGG 216 (394)
T ss_pred HHHHHhcCCCC----eEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCC
Confidence 67888776532 122322222 1211 3321 2221 24799999999999876
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|++++++++...+.... ..++ +. ...+...|.+++ |...+..++++..++|.+++
T Consensus 217 ~~~~gG~v~~~~~~~~~~~~~~-~~~~-------------G~----~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la 276 (394)
T PRK07050 217 SDVLMGATITADAELHAKLKLA-RMRL-------------GI----GVSADDCSLVLR--GLPSLQVRLAAHDRSALEVA 276 (394)
T ss_pred CCeeEEEEEECCHHHHHHHHHH-HHhc-------------CC----CCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHH
Confidence 65 577777766433221100 0000 11 112334466654 56677788999999999999
Q ss_pred HHhccCCCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 675 GKVRRDPRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 675 ~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
+.|+++|.++-+..| ..++++|.+.+... .....++.+.|..-+
T Consensus 277 ~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~---~~~~~~~~~~l~~~~ 337 (394)
T PRK07050 277 EWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYS---PAQVDAFVEALELFA 337 (394)
T ss_pred HHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCC---HHHHHHHHHcCCCCe
Confidence 999998887644211 13688999864210 123445666665543
No 401
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=97.36 E-value=0.03 Score=63.47 Aligned_cols=143 Identities=10% Similarity=0.084 Sum_probs=81.7
Q ss_pred cEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHH
Q psy852 583 DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKY 662 (891)
Q Consensus 583 DSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~ 662 (891)
|.++ .+|.++..+.+|+++...+ +.+.+.... . ...++ .-++.....+.+|+.+... +.
T Consensus 233 d~~t--~sK~~~~G~riG~~~~~~~--~~~~~~~~~----~-------~~~~~---~~~~~~~aa~aaL~~~~~~---~~ 291 (379)
T TIGR00707 233 DIIT--LAKGLGGGVPIGATLAKEE--VAEAFTPGD----H-------GSTFG---GNPLACAAALAVLEVIEKE---RL 291 (379)
T ss_pred CEEE--EcccccCCcccEEEEEcHH--HHhhhcCCC----C-------CCCCC---CCHHHHHHHHHHHHHHHhh---hH
Confidence 5454 5899996678898887533 222221100 0 00111 1122333445555555433 34
Q ss_pred HHHHHHHHHHHHHHhccCC-CcEEe-CCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEe
Q psy852 663 IRRHCELAKLFEGKVRRDP-RFEIS-NDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FEL 739 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~-~~eil-~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv 739 (891)
.++..++++++.++|++.. ...+. .+...+++.|++.+ ...++.+.|.+.|+..... +...+ +++
T Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~l~~~Gv~v~~~----~~~~lRi~~ 359 (379)
T TIGR00707 292 LENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEA--------PCKDIVKKALEKGLLVNCA----GPKVLRFLP 359 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecC--------cHHHHHHHHHHCCcEEeeC----CCCEEEEEC
Confidence 4556667777777776531 11111 11234566777642 2467888899999874321 23456 998
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei 758 (891)
+...|+++++++++.|+++
T Consensus 360 ~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 360 PLIITKEEIDEAVSALEEA 378 (379)
T ss_pred CCcCCHHHHHHHHHHHHHh
Confidence 8888999999999999864
No 402
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=97.36 E-value=0.0046 Score=70.53 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=67.7
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIG 218 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~ 218 (891)
.|++.+-+.+....++...|.+++.++.+.+ ..+|++++++.+.+. +-+|..+..+|.||.+-+. ++|+
T Consensus 119 ~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~ 192 (385)
T PRK09276 119 VVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVV 192 (385)
T ss_pred EEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 3666666666666666777889999998643 458999998877543 3366666679999999884 7888
Q ss_pred HHHHHcCCceeeeccccCC
Q psy852 219 PVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~ 237 (891)
++|+++++++.+|-+|+.+
T Consensus 193 ~~~~~~~~~ii~De~y~~~ 211 (385)
T PRK09276 193 DFAKKYDIIVCHDAAYSEI 211 (385)
T ss_pred HHHHHCCcEEEEecchhhe
Confidence 8899999999999999643
No 403
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=97.35 E-value=0.049 Score=62.34 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 710 NRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 710 n~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+.+.|.++|++.. +. +...+ |++....++++|+++++.|++.+
T Consensus 340 ~~~~~~~l~~~GV~~~-p~---~~~~lR~~p~~~~~~~~i~~~l~~l~~~l 386 (389)
T PRK01278 340 NRDLVQALRDEGLLTV-GA---GDNVVRLLPPLIITEEEIDEALERLERAA 386 (389)
T ss_pred HHHHHHHHHHCCeEEe-ec---CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 4678888888898743 22 23456 88877789999999999998765
No 404
>PRK08912 hypothetical protein; Provisional
Probab=97.34 E-value=0.02 Score=65.50 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=137.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+|+ +|+|+++++..++.+. . .+...|++..-.|.....++...|.+++.+|.++ ++.+
T Consensus 89 ~i~--~t~G~~~al~~~~~~~----~---------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 147 (387)
T PRK08912 89 EVM--VTSGATEALAAALLAL----V---------------EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRL 147 (387)
T ss_pred cEE--EeCCcHHHHHHHHHHh----c---------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcC
Confidence 566 6789898876555432 1 0122477777888888888888899999999864 6789
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC-----------CCCc
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG-----------IEYA 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG-----------i~~a 582 (891)
|+++|++++.... ..++++ +-.|++. |.++ .++ ...-
T Consensus 148 ~~~~l~~~~~~~~----~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK08912 148 PRAALAAAFSPRT----KAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRER 223 (387)
T ss_pred CHHHHHHHhCccc----eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCc
Confidence 9999999886421 122222 2345543 2221 111 1112
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--Hhh
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSG 658 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G 658 (891)
+-+..+.+|.++.| .-+|+++...+ .+ +.+. ....+ .++. +. ..+++....+. .+-
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~~-~~-~~l~~~~~~~------------~~~~--~~----~~q~~~~~~l~~~~~~ 283 (387)
T PRK08912 224 TVKIGSAGKIFSLTGWKVGFVCAAPP-LL-RVLAKAHQFL------------TFTT--PP----NLQAAVAYGLGKPDDY 283 (387)
T ss_pred eEEEeechhhccCcCceeEEEecCHH-HH-HHHHHHHhhc------------cccC--Ch----HHHHHHHHHHhCCHHH
Confidence 34567788977744 33787776432 22 2111 10000 0110 10 11222222222 122
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc----cCC
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ----EQN 733 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~----~g~ 733 (891)
+++..++..+.++++.+.|++. ++++..+.....+++++++.+ .+....++.+.|. +.|+.+..+... .+.
T Consensus 284 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~---~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~ 359 (387)
T PRK08912 284 FEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLG---LAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVT 359 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccC---CCCCHHHHHHHHHhcCCEEEecchhhCCCCCCC
Confidence 3445556677788888889886 576654333335666765311 0123456777765 578875554432 123
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.++ +++.. .++.++..++.|++.+
T Consensus 360 ~~iRl~~~~--~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 360 SVVRFCFAK--RDATLDEAVERLAAAR 384 (387)
T ss_pred CEEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 466 88775 4788888887776543
No 405
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=97.34 E-value=0.017 Score=66.47 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=70.4
Q ss_pred ccchhHHHHHHHHHHHHhccccCCcccccccc-CCeEEEecCCCChHHHHHHHHcCC------------eEEEEecCCCC
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLL-SKLMAYCSKEAHSCVEKAAMMAFV------------RLKILEPDDKN 175 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~-~~~~v~~S~~~H~Sv~kaa~~~~~------------~v~~V~~d~~g 175 (891)
+.+|+. .+...+.+||...... .|... .+-+|.+...-|-+..-++.+.+. .+..++.+
T Consensus 103 ~~SGse-A~e~Alk~a~~~~~~~----~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 174 (396)
T PRK04073 103 MNTGAE-AVETAIKAARRWAYDV----KGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG--- 174 (396)
T ss_pred cCChHH-HHHHHHHHHHHHhhhc----cCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC---
Confidence 456765 4556667777641100 01101 122344445567666555443221 12333322
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+.+. +.+|++.-..+.+|.+-| +++|.++|+++|+++.+|-++.|+
T Consensus 175 --d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 232 (396)
T PRK04073 175 --DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGL 232 (396)
T ss_pred --CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence 788898887543 468888888889999866 899999999999999999999663
No 406
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=97.33 E-value=0.0038 Score=72.17 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=66.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-+.+.....+...+.+++.++.+ ++..+|+++|++.+++. +..++.+..+|.||.+-+ +.+|++
T Consensus 124 v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~NPTG~~~s~~~~~~l~~ 197 (409)
T PLN00143 124 ILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIINPGNPCGSVYSYEHLNKIAE 197 (409)
T ss_pred EEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEECCCCCCCCccCHHHHHHHHH
Confidence 5565556666666667778899999875 34579999999877543 235555567999999977 677888
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|.+|-+|..+
T Consensus 198 ~a~~~~~~ii~De~Y~~l 215 (409)
T PLN00143 198 TARKLGILVIADEVYGHI 215 (409)
T ss_pred HHHHcCCeEEEEcccccc
Confidence 899999999999999543
No 407
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=97.32 E-value=0.014 Score=67.75 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=134.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ ++.|+++++..++.+.-+ +.-.|++..-........+...|.+++.||.|++| +|
T Consensus 143 ~Ii--it~G~~~al~~~~~~l~~-------------------pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~ 200 (431)
T PRK15481 143 EID--LTSGAIDAIERLLCAHLL-------------------PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQ 200 (431)
T ss_pred eEE--EecCcHHHHHHHHHHhCC-------------------CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CC
Confidence 566 678888988777664311 12246666667778888888899999999998776 99
Q ss_pred HHHHHHHHHhhhhcCCccEEEE----ecCCccc-----------hhhhhcCC-----CCccE-----------------E
Q psy852 543 GATLRQVMQQDETMGYIPFFVS----TTLGTTS-----------CYRKSQGI-----EYADS-----------------F 585 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv----ataGTT~-----------c~~~ldGi-----~~aDS-----------------I 585 (891)
+++|+++++.. ...++++ +-.|++. |.++-+-. -+.|. +
T Consensus 201 ~~~l~~~~~~~----~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~ 276 (431)
T PRK15481 201 PEKLERALAQG----ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWAL 276 (431)
T ss_pred HHHHHHHHhcC----CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEE
Confidence 99999998652 1223443 3456665 22210100 00111 1
Q ss_pred EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh----HH
Q psy852 586 NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG----LQ 660 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G----~~ 660 (891)
.-++.|.++ | .-+|+++.. +. +.+.+.... . ...-....+.++++...+.... ++
T Consensus 277 ~~SfSK~~~-~GlRiG~~i~~-~~-~~~~~~~~~--------------~---~~~~~~s~~~q~a~~~~l~~~~~~~~l~ 336 (431)
T PRK15481 277 IRSVSKALG-PDLRLAFVASD-SA-TSARLRLRL--------------N---SGTQWVSHLLQDLVYACLTDPEYQARLA 336 (431)
T ss_pred EeeeccccC-CCceeEEEeCC-HH-HHHHHHHHH--------------h---ccccCCCHHHHHHHHHHHhCccHHHHHH
Confidence 122333333 2 113322221 11 111010000 0 0000012345556656554333 34
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc---CCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQE---QNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~---g~~~l- 736 (891)
+..+...+..+++.+.|++. ++++..+...+-++++++. ....+.+.|.+.|+.+..++... ....+
T Consensus 337 ~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~--------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iR 407 (431)
T PRK15481 337 QARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT--------DSQATALTLAKSGWLVREGEAFGVSAPSHGLR 407 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC--------CHHHHHHHHHHCCcEEecCCccccCCCCCeEE
Confidence 45556677777888888875 5655445555666777642 23567788888998866554331 12456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++.. ++++++.+++.|.+++
T Consensus 408 is~~~~-~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 408 ITLSTL-NDAEINRLAADLHQAL 429 (431)
T ss_pred EEcCCC-ChHHHHHHHHHHHHHh
Confidence 888764 5899999999998765
No 408
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.32 E-value=0.0056 Score=70.22 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=70.5
Q ss_pred CccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
++|-+..+.|||++++-+ .|+++.+ ++.+... .. ..++ + +-...+...|..++ |.+-
T Consensus 186 gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l-~~-~~~~------------~----G~~l~p~~a~~~~r--gl~t 244 (377)
T TIGR01324 186 GVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQL-RE-HSYL------------M----GQMVDADDAYTTLR--GLRT 244 (377)
T ss_pred CceEEEecCceeccCCCCceEEEEEeC-HHHHHHH-HH-HHHH------------h----CCCCCHHHHHHHHh--hhhh
Confidence 589999999999999865 4655544 3322211 10 0010 0 11122345566665 5566
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcE-EeCC-----C-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFE-ISND-----V-----------RLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~e-il~~-----~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
+.-++++..++|..+++.|++.|.++ +.-| | ..++++|++++.+ .....++.+.|+.-
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~----~~~~~~~~~~l~~~ 319 (377)
T TIGR01324 245 LGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT----QKQVHAFLDHLQLF 319 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC----HHHHHHHHHhCCcc
Confidence 77779999999999999999988774 3221 1 1479999997532 12334666666553
No 409
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=97.32 E-value=0.03 Score=63.97 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhccC----CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 662 YIRRHCELAKLFEGKVRRD----PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~----~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
..++..++.+++.+.|++. +.+..+ +.....+.+++. . ...++..+|.++|+++..+ +...+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~-~-------~~~~~~~~l~~~Gv~v~~~----~~~~lR 369 (396)
T PRK02627 303 LLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIGIELD-R-------PAAEIVKKALEKGLLINVT----GDNVLR 369 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEEEEec-C-------cHHHHHHHHHHCCeEEeec----CCCEEE
Confidence 4455555666666665543 222211 122345667662 1 3467888888889874332 23456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++...++++|+++++.|++.+.
T Consensus 370 i~~~~~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 370 LLPPLIISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred EECCcccCHHHHHHHHHHHHHHHH
Confidence 888777899999999999988763
No 410
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=97.32 E-value=0.0039 Score=71.58 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=66.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCC--CCcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~--~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|+++.-++......+...|.+++.++++. ++.+|++.|++.+.+.. -+|+++..+|.||.+- .+++|++
T Consensus 122 v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~NPtG~~~~~~~~~~l~~ 195 (401)
T TIGR01264 122 ILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKT------AALIVNNPSNPCGSVFSRQHLEEILA 195 (401)
T ss_pred EEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCc------eEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 55555555555556667778898888754 57899999998776432 3556677799999995 4888999
Q ss_pred HHHHcCCceeeeccccCCc
Q psy852 220 VAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~~ 238 (891)
+|+++|++|++|.+|+.+.
T Consensus 196 ~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 196 VAERQCLPIIADEIYGDMV 214 (401)
T ss_pred HHHHCCCEEEEEhhhhhhc
Confidence 9999999999999996543
No 411
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=97.31 E-value=0.01 Score=67.97 Aligned_cols=184 Identities=11% Similarity=0.189 Sum_probs=105.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----HHHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+. .+. | -.|+++...|.+ ..+.+...|++++.++.+ |+
T Consensus 74 ~~~sG~~Ai~~al~al----~~~----------G-----d~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~ 129 (380)
T TIGR01325 74 ATATGMSAIQAALMTL----LQA----------G-----DHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT-----DL 129 (380)
T ss_pred EECCHHHHHHHHHHHH----hCC----------C-----CEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC-----CH
Confidence 4678888888777553 111 1 125555555543 233444567888888764 68
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~P 596 (891)
++|++++++.+ ..+++. +..|+.. |+++ +|. + -++|.+..++|||++++
T Consensus 130 ~~l~~~i~~~t----klV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~ 205 (380)
T TIGR01325 130 NAWEAAVKPNT----KLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQ 205 (380)
T ss_pred HHHHHhcCCCc----eEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCC
Confidence 88888776532 112211 2234332 3331 221 1 24899999999999987
Q ss_pred cc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy852 597 FD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEG 675 (891)
Q Consensus 597 ~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~ 675 (891)
-. .|.+++.+++.+.. +. .++.. .+..+.....|..++ |.+-+..++++..++++++.+
T Consensus 206 g~~~gG~vv~~~~~~~~-l~---~~~~~--------------~g~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la~ 265 (380)
T TIGR01325 206 GRVMGGVIAGSEELMAE-VA---VYLRH--------------TGPAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIAE 265 (380)
T ss_pred CCeEEEEEEeCHHHHHH-HH---HHHHh--------------hCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHH
Confidence 43 43444444433221 11 01100 011122334455554 677777889999999999999
Q ss_pred HhccCCCcEEeC------CC-----------ceeEEEEEec
Q psy852 676 KVRRDPRFEISN------DV-----------RLGLVCFRLR 699 (891)
Q Consensus 676 ~L~~~~~~eil~------~~-----------~~~iV~Fr~~ 699 (891)
.|+++|.++-+. .| -.++++|.++
T Consensus 266 ~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 266 WLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 999988776432 11 1369999996
No 412
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=97.31 E-value=0.0053 Score=70.97 Aligned_cols=301 Identities=9% Similarity=0.036 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCcccccccc
Q psy852 424 LKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVL 503 (891)
Q Consensus 424 l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~ 503 (891)
-+.|.+|.. |.+.|..-- ...++-+.+++.+.. +-.- ++..|+.++.+++...-. +... +-|..
T Consensus 57 ~~m~aAM~~-GDD~Y~gdp-Sv~~Lee~vael~G~----E~al-pthqGRgaE~Il~~~~~~----~~g~-----e~g~~ 120 (467)
T TIGR02617 57 QSMQAAMMR-GDEAYSGSR-SYYALAESVKNIFGY----QYTI-PTHQGRGAEQIYIPVLIK----KREQ-----EKGLD 120 (467)
T ss_pred HHHHHHHHc-CCcccccCc-hHHHHHHHHHHHhCC----ceEE-ECCCCchHHHHHHHhhcc----cccc-----ccccc
Confidence 456777765 665553321 112344444555433 3332 344557777777544211 0000 00000
Q ss_pred ccceEEEecccchHHHHHH-HHHcCceEEEecC----------CCCCCcCHHHHHHHHHhhhhcC--Cc-cEEEEecCCc
Q psy852 504 LSKLMAYCSKEAHSCVEKA-AMMAFVRLKILEP----------DDKNSLRGATLRQVMQQDETMG--YI-PFFVSTTLGT 569 (891)
Q Consensus 504 ~~~~vI~~S~~aH~Sv~Ka-a~l~gv~v~~Vp~----------d~~G~mD~~~Le~aI~~d~~~g--~i-p~~VvataGT 569 (891)
..++ +++...|+--.++ +.+.|+..+.+++ +.+|.||+++|+++|++....+ .+ +-++++++|.
T Consensus 121 ~~~~--~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GG 198 (467)
T TIGR02617 121 RSKM--VAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGG 198 (467)
T ss_pred cccc--ccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCC
Confidence 0011 4455555554443 4577877776543 2469999999999998642111 11 2233455555
Q ss_pred cc------------hhh-----hhcC-----------------------------CCCccEEEEcCcccCCcccccEEEE
Q psy852 570 TS------------CYR-----KSQG-----------------------------IEYADSFNVNVNKWLLTAFDSSCLW 603 (891)
Q Consensus 570 T~------------c~~-----~ldG-----------------------------i~~aDSIs~d~HK~L~~P~g~G~ll 603 (891)
.. |++ |+|| .+++||+++|+.|.+++|+|. ++.
T Consensus 199 qpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg-~La 277 (467)
T TIGR02617 199 QPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGG-LLC 277 (467)
T ss_pred EEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccc-eEE
Confidence 43 332 2332 177899999999999999963 444
Q ss_pred EeCC---ccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Q psy852 604 VADR---YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRD 680 (891)
Q Consensus 604 vR~~---~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~ 680 (891)
.+++ +.+.+.-.....| |+-+ .++=-.+|-..++++ -+-..--...+++.....+||.++|++.
T Consensus 278 g~d~~~~~l~~~~~~~~i~~-----EGf~---tYGGlagrd~ea~a~-----Gl~e~~~~~yl~~ri~qv~yl~~~L~~~ 344 (467)
T TIGR02617 278 FKDDSFFDVYTECRTLCVVQ-----EGFP---TYGGLEGGAMERLAV-----GLYDGMNLDWLAYRINQVQYLVNGLEEI 344 (467)
T ss_pred ecchhHHHHHHHHHhhcccc-----cCCc---CcCchhHHHHHHHHh-----hhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence 4454 2222211111111 1111 222222444444431 0111112456667788889999999873
Q ss_pred CCcEEeCCCceeEEEEE---ecCC-cchhhhhhHHHHHHHH-HhCCcEEEe-ecc-----ccC-------CeEE-EEecC
Q psy852 681 PRFEISNDVRLGLVCFR---LRSE-NNLIADQNNRKLLEDI-NASGRLHMV-PAS-----QEQ-------NDEV-FELQE 741 (891)
Q Consensus 681 ~~~eil~~~~~~iV~Fr---~~~~-~~~~~d~ln~~L~~~L-~~~G~~~~s-~s~-----~~g-------~~~l-~sv~~ 741 (891)
++-++. +.-.-|-.. +.|- ..+ .--.+.|...| .+.|+--+. ++- ... -..+ +.+..
T Consensus 345 -Gvpi~~-~Gghav~iDa~~~lphip~~--~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipR 420 (467)
T TIGR02617 345 -GVVCQQ-AGGHAAFVDAGKLLPHIPAD--QFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPR 420 (467)
T ss_pred -CCcEEe-cCccEEEEehhhhCCCCChh--hCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeecccc
Confidence 565554 333333221 1111 011 12345666665 456653111 111 111 1334 55544
Q ss_pred C-CCHHHHHHHHHHHHHHHH
Q psy852 742 R-KRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 742 ~-tT~edId~li~~L~ei~~ 760 (891)
. -|.+++|..++++..+.+
T Consensus 421 rvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 421 ATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred ccccHhHHHHHHHHHHHHHh
Confidence 3 389999999999998763
No 413
>PRK07568 aspartate aminotransferase; Provisional
Probab=97.29 E-value=0.034 Score=63.60 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=130.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CCC-C
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DKN-S 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~G-~ 540 (891)
+|+ +|+|+++++..++.+. .+ +.-.|+++.-.+......+...|++++.+|.+ ++| .
T Consensus 90 ~i~--~t~G~~~al~~~~~~l----~~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~ 148 (397)
T PRK07568 90 EIL--ITNGGSEAILFAMMAI----CD---------------PGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFH 148 (397)
T ss_pred eEE--EcCChHHHHHHHHHHh----cC---------------CCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCC
Confidence 455 7889999888766542 11 11135555544444555567788999999986 344 2
Q ss_pred -cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC--------CCC-c
Q psy852 541 -LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG--------IEY-A 582 (891)
Q Consensus 541 -mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG--------i~~-a 582 (891)
.|+++|++++++..+ .++++ +..|++. |.++ + ++ +.. .
T Consensus 149 ~~~~~~l~~~~~~~~~----~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~ 224 (397)
T PRK07568 149 LPSKEEIEKLITPKTK----AILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLE 224 (397)
T ss_pred CCCHHHHHHhcCccce----EEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCc
Confidence 357899988865321 12222 2345543 2221 1 11 000 1
Q ss_pred c-EE-EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHh
Q psy852 583 D-SF-NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLS 657 (891)
Q Consensus 583 D-SI-s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~ 657 (891)
+ .| .-+.+|.++.| .-+|+++..+++.+......... .+ ....+.+.++...+ +..
T Consensus 225 ~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-------------~~------~~s~~~q~~~~~~l~~~~~ 285 (397)
T PRK07568 225 DRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQA-------------RL------SPPTLEQIGAAALLDTPES 285 (397)
T ss_pred CCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhc-------------cC------CCCcHHHHHHHHHhhCCHH
Confidence 1 23 33678877653 55788777554333221111000 00 01122333333333 233
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh------CCcEEEeeccc-
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA------SGRLHMVPASQ- 730 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~------~G~~~~s~s~~- 730 (891)
-+++..+...+.++.+.+.|++.+++.+..+.....++++++.. ...++.+.|.+ .|+.+..+...
T Consensus 286 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~ 358 (397)
T PRK07568 286 YFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFY 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhc
Confidence 45555666777888899999888777654333333456676432 23455566543 47765544322
Q ss_pred ----cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 ----EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ----~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.+...+ +++. .+.++++++++.|.+.+
T Consensus 359 ~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 359 ATPGLGKNEIRIAYV--LNEEDLKRAMEILKEAL 390 (397)
T ss_pred CCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHH
Confidence 123456 8875 35799999998888765
No 414
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=97.29 E-value=0.031 Score=66.50 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=70.9
Q ss_pred EEEecCCCChHHHHHHH-HcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAM-MAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I 217 (891)
.|++..-.+......+. ..|.+++.|+++ +++.+|+++|+++++...+.+..+-+|+++--+|.||.+-+. ++|
T Consensus 145 ~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L 224 (496)
T PLN02376 145 VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNL 224 (496)
T ss_pred EEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHH
Confidence 36666666666766665 468899999986 457899999998876544334445566677889999999775 557
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|++++++|.+|-+|+.+
T Consensus 225 ~~~a~~~~i~lI~DEiY~~~ 244 (496)
T PLN02376 225 VRFVTRKNIHLVVDEIYAAT 244 (496)
T ss_pred HHHHHHcCCEEEEEcCcccc
Confidence 77889999999999999543
No 415
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.28 E-value=0.0015 Score=74.67 Aligned_cols=268 Identities=13% Similarity=0.090 Sum_probs=169.2
Q ss_pred HHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHH----HHH
Q psy852 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE----KAA 523 (891)
Q Consensus 448 lAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~----Kaa 523 (891)
+.+.+++.+...+. +++ ++.|+++++...+.+..... .+...|+++..+|+|.. ..+
T Consensus 65 l~~~ia~~~~~~~~-~v~--~~~~~t~~l~~~~~~~~~~~----------------~~gd~vl~~~~~~~s~~~~~~~~~ 125 (397)
T TIGR01976 65 AREAVADLLNADPP-EVV--FGANATSLTFLLSRAISRRW----------------GPGDEVIVTRLDHEANISPWLQAA 125 (397)
T ss_pred HHHHHHHHcCCCCC-eEE--EeCCHHHHHHHHHHHHHhcC----------------CCCCEEEEcCCchHhHHHHHHHHH
Confidence 33455556655444 455 56788887665443332110 12235888888998765 344
Q ss_pred HHcCceEEEecCCC-CCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hcCC-------
Q psy852 524 MMAFVRLKILEPDD-KNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQGI------- 579 (891)
Q Consensus 524 ~l~gv~v~~Vp~d~-~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ldGi------- 579 (891)
...|++++.+|.++ ++.+|+++|+++|++.+ ..+++ .+..|... |+++ +|++
T Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~----~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~ 201 (397)
T TIGR01976 126 ERAGAKVKWARVDEATGELHPDDLASLLSPRT----RLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGL 201 (397)
T ss_pred HhcCCEEEEEeccccCCCcCHHHHHHhcCCCc----eEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccC
Confidence 56789999999876 79999999999997532 12222 23455543 4331 2221
Q ss_pred -----CCccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcc-ccccccc-chHHHHHHH
Q psy852 580 -----EYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGI-PLSRRFR-SLKLWFVIR 652 (891)
Q Consensus 580 -----~~aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti-~~SRr~~-aL~lW~~L~ 652 (891)
..+|.+++++|||++ |. +|+++++++ .+.........|..... ...+ .+++.+. .+.++.+++
T Consensus 202 ~~~~~~~~d~~~~s~~K~~g-~~-~G~l~~~~~-~~~~l~~~~~~~~~~~~-------~~~~~~gt~~~~~~~~l~~al~ 271 (397)
T TIGR01976 202 IDVQATGADFLTCSAYKFFG-PH-MGILWGRPE-LLMNLPPYKLTFSYDTG-------PERFELGTPQYELLAGVVAAVD 271 (397)
T ss_pred CCHHHcCCCEEEEechhhcC-Cc-eEEEEEcHH-HHhhCCCccccCccCCC-------cchhcCCCCCHHHHHHHHHHHH
Confidence 247999999999986 43 788888755 22111111111111100 0011 1233322 345667777
Q ss_pred HHHHhh--------------HHHHHHHHHHHHHHHHHHhccCCCcEEeCC----CceeEEEEEecCCcchhhhhhHHHHH
Q psy852 653 TYGLSG--------------LQKYIRRHCELAKLFEGKVRRDPRFEISND----VRLGLVCFRLRSENNLIADQNNRKLL 714 (891)
Q Consensus 653 ~lG~~G--------------~~~~i~~~~~lA~~L~~~L~~~~~~eil~~----~~~~iV~Fr~~~~~~~~~d~ln~~L~ 714 (891)
.+...| +++..++..++++++.+.|+++++++++.+ ...+++.|.+.+. ....+.
T Consensus 272 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~ 344 (397)
T TIGR01976 272 YLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVV 344 (397)
T ss_pred HHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHH
Confidence 664443 677788889999999999999888998764 2578999988533 346788
Q ss_pred HHHHhCCcEEEeeccc-----------cCCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 715 EDINASGRLHMVPASQ-----------EQNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 715 ~~L~~~G~~~~s~s~~-----------~g~~~l-~sv~~~tT~edId~li~~L 755 (891)
++|.+.|+.+..++.+ .....+ +|++.++|++|||+++++|
T Consensus 345 ~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 345 RRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 9999999886654322 133467 9999999999999999764
No 416
>PLN02231 alanine transaminase
Probab=97.27 E-value=0.0048 Score=73.89 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=69.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++..-.......++...+.+++.++.|++ +.+|+++|++.+++...++..+-+++++--+|.||.+- .+++|++
T Consensus 219 Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~ 298 (534)
T PLN02231 219 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVE 298 (534)
T ss_pred EEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 555555555556666667778999998864 58999999999987554444455555556688999995 5567888
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|..|-+|+-
T Consensus 299 ~a~~~~l~lI~DEvY~~ 315 (534)
T PLN02231 299 FCKQEGLVLLADEVYQE 315 (534)
T ss_pred HHHHcCCEEEEEccchh
Confidence 99999999999999943
No 417
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=97.27 E-value=0.026 Score=64.28 Aligned_cols=142 Identities=8% Similarity=0.037 Sum_probs=75.7
Q ss_pred cCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHH-HH
Q psy852 588 NVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIR-RH 666 (891)
Q Consensus 588 d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~-~~ 666 (891)
+..|.++.-+..|+++.+++ +.+.+... .+ ..+.. +-+........+|+.+..+++.+.++ ..
T Consensus 231 t~sK~l~~G~~ig~~~~~~~--~~~~~~~~-~~------------~~t~~-~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 294 (375)
T PRK04260 231 TLAKGLANGVPVGAMLAKSS--LGGAFGYG-SH------------GSTFG-GNKLSMAAASATLDIMLTAGFLEQALENG 294 (375)
T ss_pred EecccccCCcceEEEEEcHH--HHhhcCCC-CC------------CCCCC-cCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56898774456789988754 22222100 00 01111 11223334445555544444433322 22
Q ss_pred HHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCCH
Q psy852 667 CELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKRK 745 (891)
Q Consensus 667 ~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT~ 745 (891)
..+.+.+.+.+...+.+.-+.. ....+.+.+. . ...++.++|.+.|+.+. +. +...+ ++++..+++
T Consensus 295 ~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~-~-------~~~~~~~~l~~~Gi~v~-~~---~~~~lR~~~~~~~t~ 361 (375)
T PRK04260 295 NYLQEQLQKALQDKETVTTVRG-LGYMIGIETT-A-------DLSQLVEAARDKGLIVL-TA---GTNVIRLLPPLTLTK 361 (375)
T ss_pred HHHHHHHHHHHhhCCCeeEEec-cceEEEEEec-C-------cHHHHHHHHHhCCCEEe-cC---CCCEEEEcCCCccCH
Confidence 3333444444444433222211 3345566652 1 34678889999998743 22 33556 999888899
Q ss_pred HHHHHHHHHHHHH
Q psy852 746 DDLAYKRSFFVRM 758 (891)
Q Consensus 746 edId~li~~L~ei 758 (891)
+||+++++.|+++
T Consensus 362 ~~i~~~l~~l~~~ 374 (375)
T PRK04260 362 EEIEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
No 418
>KOG2467|consensus
Probab=97.27 E-value=0.0033 Score=69.69 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=120.4
Q ss_pred ecC-CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccccCCccccCCCCccC
Q psy852 170 EPD-DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFM 248 (891)
Q Consensus 170 ~~d-~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~GG~~~~~~~~~~~~ 248 (891)
.+| ..|-||.|.||+....- +|-+++ +|++...-.-|...+.+||++.|..+.+|=|+
T Consensus 168 kv~~~TG~IDYD~Le~~A~~f-----rPk~ii--aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAH-------------- 226 (477)
T KOG2467|consen 168 KVDPSTGYIDYDKLEKTATLF-----RPKLII--AGTSAYSRLIDYARFRKIADKVGAYLMADMAH-------------- 226 (477)
T ss_pred eeCCCCCceehHHHHHHHHhc-----CCcEEE--eccccchhhccHHHHHHHHHhcCceeehhhhh--------------
Confidence 356 57999999999865543 365554 57788888889999999999998777777666
Q ss_pred CCCcccccCCCCcccccCCCCcchhHHHHhhhhHHHHHhhhcccCCccchhhHHHHhhhhhccccccccccccccccccc
Q psy852 249 NGKTSFDNLHLSPIWYERPSSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRD 328 (891)
Q Consensus 249 ~g~~~~d~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (891)
+|+-
T Consensus 227 ----------ISgL------------------------------------------------------------------ 230 (477)
T KOG2467|consen 227 ----------ISGL------------------------------------------------------------------ 230 (477)
T ss_pred ----------HHHH------------------------------------------------------------------
Confidence 1110
Q ss_pred cccceEEEeeccccCccccCccccccccCCCcccEEEEeCCCcCCccCCceEEEEeccccchhhcccCccccCCCCCCcc
Q psy852 329 AIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAI 408 (891)
Q Consensus 329 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~~ds~~~~~HK~~~~p~~~g~~~~r~~~~~~~~~~~~~~y~~~~~~~~~ 408 (891)
-|.+.+.+ -.++||-+|..-||.+-+|-+ |++++|.+-+-.. ...+.-+....|..+
T Consensus 231 ------------VAA~vips--------PFey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~--~k~g~~i~ydlE~kI 287 (477)
T KOG2467|consen 231 ------------VAAGVIPS--------PFEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIK--PKQGKEILYDLEDKI 287 (477)
T ss_pred ------------HhcccCCC--------cccccceeeccccccccCCcc-eeEEEeccCCcCC--CCCCCcceechhhhh
Confidence 01111111 135799999999999999997 7888887633221 111111122233455
Q ss_pred cccc-cccCCCCChh-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q psy852 409 DYRH-WGIPLSRRFR-SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEIS 465 (891)
Q Consensus 409 ~~~~-~~~~~sr~~~-~l~~w~~l~~~g~~G~~~ii~~~lelAr~l~~~L~~~~~~eVv 465 (891)
|+.. .+++|.-+.. ..++-.+||.-..-.|.+..++.+.+|+.+++.|.+ .+++++
T Consensus 288 NfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~-~Gy~lv 345 (477)
T KOG2467|consen 288 NFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALIS-RGYKLV 345 (477)
T ss_pred hhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH-cCceEe
Confidence 5433 3677776654 446678899999999999999999999999999976 466766
No 419
>PRK09148 aminotransferase; Validated
Probab=97.26 E-value=0.0058 Score=70.46 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=66.6
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCH---HHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNL---AEIGPVA 221 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl---~~I~~i~ 221 (891)
|++..-++......+...|.+++.|+++.++. +++++++.+..... .+.+|+.+..+|.||.+-+. ++|+++|
T Consensus 119 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~---~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a 194 (405)
T PRK09148 119 ILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIP---KPIALIVNYPSNPTAYVADLDFYKDVVAFA 194 (405)
T ss_pred EEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccc---cceEEEEeCCCCCCCcCCCHHHHHHHHHHH
Confidence 66666677666666666788999999976653 35666666653321 24678888889999999887 5788889
Q ss_pred HHcCCceeeeccccCC
Q psy852 222 KEFDVWLHVDGAYAGS 237 (891)
Q Consensus 222 ~~~~~~lHvDaA~GG~ 237 (891)
++++++|.+|-+|+.+
T Consensus 195 ~~~~~~ii~De~Y~~~ 210 (405)
T PRK09148 195 KKHDIIILSDLAYSEI 210 (405)
T ss_pred HHcCeEEEEeccchhh
Confidence 9999999999999643
No 420
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=97.25 E-value=0.023 Score=65.59 Aligned_cols=177 Identities=12% Similarity=0.122 Sum_probs=103.3
Q ss_pred EEEecccchHHHHHH----HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKA----AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Ka----a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c 572 (891)
.|+++...|.+.... +...|++++.++. .|+++|+++|++.++ .+++ .+..|... |
T Consensus 105 ~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~tk----lV~ie~p~NPtg~v~dl~~I~~la 175 (398)
T PRK08249 105 RVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKGCD----LLYLETPTNPTLKIVDIERLAAAA 175 (398)
T ss_pred EEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCCCe----EEEEECCCCCCCccCCHHHHHHHH
Confidence 477777788765433 3345777766653 588888888865321 2222 22234433 3
Q ss_pred hhh-----hcC-----------CCCccEEEEcCcccCCcccc-cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 573 YRK-----SQG-----------IEYADSFNVNVNKWLLTAFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 573 ~~~-----ldG-----------i~~aDSIs~d~HK~L~~P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
+++ +|. ...+|.+..+++|+++++-+ .|.+++.+++......... ..
T Consensus 176 ~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~-~~--------------- 239 (398)
T PRK08249 176 KKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR-EI--------------- 239 (398)
T ss_pred HHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH-Hh---------------
Confidence 321 111 13589999999999997754 3445555543322211100 00
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCC------C-----------ceeEEEEEe
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISND------V-----------RLGLVCFRL 698 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~------~-----------~~~iV~Fr~ 698 (891)
.+-....+..|..++ |.+.+..++++..++++++.+.|+++|.++-+.- | -.++++|.+
T Consensus 240 --~g~~~s~~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~ 315 (398)
T PRK08249 240 --NGATMDPMSAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVL 315 (398)
T ss_pred --cCCCCCHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEE
Confidence 011223455666655 6677788899999999999999999888764321 1 136999999
Q ss_pred cCCcchhhhhhHHHHHHHHH
Q psy852 699 RSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 699 ~~~~~~~~d~ln~~L~~~L~ 718 (891)
++. .....++++.|.
T Consensus 316 ~~~-----~~~~~~f~~~l~ 330 (398)
T PRK08249 316 KGG-----MDTVKRLLPKLR 330 (398)
T ss_pred cCC-----HHHHHHHHHhCC
Confidence 642 223345555554
No 421
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=97.25 E-value=0.028 Score=64.52 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 177 LRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 177 id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
.|+++|++.+.+. +.+|++....+.+|.+-| +++|+++|+++|+++.+|.++.|+
T Consensus 175 ~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~ 233 (401)
T PRK00854 175 GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233 (401)
T ss_pred CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 3789999988642 357778888889999987 999999999999999999999663
No 422
>PRK07550 hypothetical protein; Provisional
Probab=97.25 E-value=0.053 Score=61.91 Aligned_cols=245 Identities=9% Similarity=0.005 Sum_probs=135.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+... +.-.|++..-.+......+...|++++.+|.++ .+.
T Consensus 92 ~i~--~t~G~~~al~~~~~~l~~-------------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (386)
T PRK07550 92 QVH--ITSGCNQAFWAAMVTLAG-------------------AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLL 150 (386)
T ss_pred eEE--EecCcHHHHHHHHHHhcC-------------------CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCC
Confidence 556 678888887776655311 112366666666666666678899999999974 456
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC---------------CC----c
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI---------------EY----A 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi---------------~~----a 582 (891)
+|+++|++++++.. ..++++ +-.|.+. |.++ .|.+ .. .
T Consensus 151 ~~~~~l~~~~~~~~----~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~ 226 (386)
T PRK07550 151 PDPAAAEALITPRT----RAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDD 226 (386)
T ss_pred CCHHHHHHHhcccC----cEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccc
Confidence 89999999997532 122333 3345443 3221 1110 00 0
Q ss_pred cE-EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH--hh
Q psy852 583 DS-FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL--SG 658 (891)
Q Consensus 583 DS-Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~--~G 658 (891)
.. ...+.+|.++.| ..+|+++..++ .+..... +... .+.. ...+.++++...+.. +-
T Consensus 227 ~~i~~~S~SK~~g~~G~RiG~i~~~~~-~~~~~~~----~~~~----------~~~~----~s~~~q~~~~~~l~~~~~~ 287 (386)
T PRK07550 227 TLVHLYSFSKSYALTGHRVGAVVASPA-RIAEIEK----FMDT----------VAIC----APRIGQIAVAWGLPNLADW 287 (386)
T ss_pred cEEEEecchhhccCcccceEeeecCHH-HHHHHHH----HHhh----------cccC----CCcHHHHHHHHHhccHHHH
Confidence 12 245788988755 45777776432 2221111 1100 0011 112333333333321 22
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~ 735 (891)
.++..+...+.++++.+.|+..+++.+. +.....+++++... +....++.+.|. +.|+.+..+... .+...
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~-----~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~ 361 (386)
T PRK07550 288 RAGNRAEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFP-----DRPSREVARRLAKEAGILCLPGTMFGPGQEGY 361 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCC-----CCCHHHHHHHHHHhcCEEEeCchhhCCCCCCE
Confidence 2334445566777888888877666543 33445666666431 123567888764 578775544332 22345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei 758 (891)
+ +++.. .++++++++++.|.+.
T Consensus 362 iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 362 LRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred EEEEeec-CCHHHHHHHHHHHHhh
Confidence 6 88864 4689999999888764
No 423
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=97.25 E-value=0.07 Score=61.59 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=83.5
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-+++ -|.++.-++.|+++.+++.. . + ...+. ..|.. +-+..+.....+|+.+-.+ +
T Consensus 241 PDi~t~--gK~lg~G~p~~av~~~~~i~--~-~--~~~~~-----------~~T~~-g~pl~~aaala~L~~l~~~---~ 298 (395)
T PRK03715 241 PDIMTL--GKGIGGGVPLAALLAKAEVA--V-F--EAGDQ-----------GGTYN-GNPLMTAVGVAVISQLLAP---G 298 (395)
T ss_pred Cceeee--hhhhhCCcceEEEEEccccc--c-c--cCCCc-----------CCCCC-CCHHHHHHHHHHHHHHHhc---c
Confidence 687777 48887767789998877631 1 1 11110 11211 2233344455566666443 4
Q ss_pred HHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh---CCcEEEeeccccCCeE
Q psy852 662 YIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA---SGRLHMVPASQEQNDE 735 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~---~G~~~~s~s~~~g~~~ 735 (891)
.+++..++.++|.++|+++ .++.-+. -...++.+.+... ....+.+.+.+ +|++.. +. ...+
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~-------~~~~~~~~~~~~~~~Gi~~~-~~---~~~~ 366 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKD-------IGPQIVEKARDMQPDGLLLN-AP---RPNL 366 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCc-------hHHHHHHHHHhccCCCEEEe-ec---CCCE
Confidence 5667777888888888653 1222111 1234566666421 22334444444 487632 21 2346
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ +++...+|++|||.++++|++.+.
T Consensus 367 lR~~p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 367 LRFMPALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999998763
No 424
>PRK03321 putative aminotransferase; Provisional
Probab=97.24 E-value=0.0021 Score=72.36 Aligned_cols=88 Identities=9% Similarity=0.005 Sum_probs=67.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++..-+.......+...|.+++.|+.++++.+|++++++.+++. +.+|+++..+|.+|.+-|+++|.++|++
T Consensus 101 Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~ 174 (352)
T PRK03321 101 VIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAV 174 (352)
T ss_pred EEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 554433322333344567789999999877999999999988643 2366667789999999999999999987
Q ss_pred -cCCceeeeccccCCc
Q psy852 224 -FDVWLHVDGAYAGSS 238 (891)
Q Consensus 224 -~~~~lHvDaA~GG~~ 238 (891)
+++++.+|.+|+.+.
T Consensus 175 ~~~~~ii~De~y~~~~ 190 (352)
T PRK03321 175 PADVLVVLDEAYVEYV 190 (352)
T ss_pred CCCeEEEEechHHHhc
Confidence 589999999996543
No 425
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=97.24 E-value=0.058 Score=62.38 Aligned_cols=250 Identities=10% Similarity=0.026 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+... +.-.|+++.-.+......+...|++++.+|.++ ++.
T Consensus 106 ~i~--it~G~~~al~~~~~~~~~-------------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~ 164 (412)
T PTZ00433 106 NVV--LCSGVSHAILMALTALCD-------------------EGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWE 164 (412)
T ss_pred hEE--EeCChHHHHHHHHHHhcC-------------------CCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCc
Confidence 556 788999998877665311 112466666777778888888899999999853 578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh-----h---------cCCC---------Ccc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK-----S---------QGIE---------YAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~-----l---------dGi~---------~aD 583 (891)
+|+++|++++.+.. ..+++++ -.|++. |.++ . ++-. ..+
T Consensus 165 ~d~~~l~~~~~~~~----~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T PTZ00433 165 ADLDEIRRLVDDRT----KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVP 240 (412)
T ss_pred CCHHHHHHHhccCc----eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCc
Confidence 99999998886532 1223322 256543 2221 1 1100 011
Q ss_pred EEE-EcCcccCCcc-cccEEEEEeCCcc----chhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-
Q psy852 584 SFN-VNVNKWLLTA-FDSSCLWVADRYK----LTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG- 655 (891)
Q Consensus 584 SIs-~d~HK~L~~P-~g~G~llvR~~~~----L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG- 655 (891)
.|. -+..|.++.| .-+|+++..++.. +...+. .... .++ ...+.+.+....+-
T Consensus 241 ~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~-------------~~~------~~~~~q~a~~~~l~~ 301 (412)
T PTZ00433 241 RVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML-------------VCG------PCSVVQAALGEALLN 301 (412)
T ss_pred eEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc-------------cCC------CChHHHHHHHHHHhc
Confidence 232 3567766444 5567776632211 111110 0000 000 11223333333332
Q ss_pred --HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccccC
Q psy852 656 --LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQEQ 732 (891)
Q Consensus 656 --~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g 732 (891)
..-+++..+...+..+.+.+.|++..++.+..+....-+.+++........ ....++.+.|. +.|+.+..+.....
T Consensus 302 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~ 380 (412)
T PTZ00433 302 TPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDI-KSDVEFYEKLLEEENVQVLPGEIFHM 380 (412)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCC-CCHHHHHHHHHHhcCEEEeCccccCC
Confidence 123444455666777888888987666665444344566667642100000 02457888886 47987665544433
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
...+ ++++. .++++++.++.|.+.+
T Consensus 381 ~~~iRis~~~--~~e~l~~al~~l~~~~ 406 (412)
T PTZ00433 381 PGFTRLTISR--PVEVLREAVERIKAFC 406 (412)
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 4456 88764 4778888888777655
No 426
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=97.24 E-value=0.021 Score=65.93 Aligned_cols=118 Identities=11% Similarity=0.001 Sum_probs=73.8
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeE---EEEecCCC----CcccHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRL---KILEPDDK----NSLRGA 180 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v---~~V~~d~~----g~id~~ 180 (891)
++.+|+++ |...+.+||...+.. ...++-+|.....-|-+..-++.+.+... ...|.... ..-|++
T Consensus 98 f~~SGseA-~e~Aik~ar~~~~~~------~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~ 170 (395)
T PRK03715 98 FANSGAEA-NEGAIKLARKWGRKH------KNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIA 170 (395)
T ss_pred EeCCcHHH-HHHHHHHHHHHhhcc------CCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHH
Confidence 45678754 555666777542111 00112345555667888777665543221 11111111 124788
Q ss_pred HHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCCc
Q psy852 181 TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 181 ~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~~ 238 (891)
+|++.+.+. +.+|++.-...+.|.+-| +++|.++|++||+++++|-++.|+.
T Consensus 171 ~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~G 226 (395)
T PRK03715 171 SVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCG 226 (395)
T ss_pred HHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 898887532 457777777788888877 9999999999999999999997743
No 427
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=97.24 E-value=0.021 Score=64.30 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=133.4
Q ss_pred CccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC-CC
Q psy852 460 PRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD-DK 538 (891)
Q Consensus 460 ~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d-~~ 538 (891)
++..|+ +|+|+++++..++.+.-. . | .+.-.|++..-.+.....++.+.|++++.+|.+ ++
T Consensus 59 ~~~~Ii--it~Gs~~ai~~~~~~~~~----~----------g--~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 120 (350)
T TIGR03537 59 PDAQVL--PSAGSKEAIFHFPLVFID----P----------E--EDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKED 120 (350)
T ss_pred CCCcEE--EcCChHHHHHHHHHHHcC----C----------C--CCCceEEEcCCCCcchHHHHHhcCCEEEEcccCccc
Confidence 433566 788988988766544311 0 0 001247777778888888889999999999986 33
Q ss_pred -CCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hc---------C-------CCCc
Q psy852 539 -NSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQ---------G-------IEYA 582 (891)
Q Consensus 539 -G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ld---------G-------i~~a 582 (891)
..+|+++|++++.+.. ..++++ +-.|++. |.++ .| + ...-
T Consensus 121 ~~~~d~~~l~~~~~~~~----~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 196 (350)
T TIGR03537 121 GFLLRLEKVEKSILEET----KIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIE 196 (350)
T ss_pred CCccCHHHHHHhhhhcc----EEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcC
Confidence 4589999999987632 122332 3456544 2221 01 0 0111
Q ss_pred cEEEE-cCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-Hhh
Q psy852 583 DSFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSG 658 (891)
Q Consensus 583 DSIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G 658 (891)
..|.+ +++|.++.| .-.|+++ .++..+ +.+. ....+ +...+. +.+..+...+. ...
T Consensus 197 ~~i~~~s~SK~~g~~GlRiG~~~-~~~~~~-~~~~~~~~~~--------------~~~~~~----~~q~~~~~~l~~~~~ 256 (350)
T TIGR03537 197 NVLAFHSLSKRSGMTGYRSGFVA-GDEKLI-SFLRKLRANF--------------GVASPD----FVQAAAKAAWSDDNH 256 (350)
T ss_pred CEEEEeecccccCCccccceeee-cCHHHH-HHHHHHHHhh--------------ccCCCH----HHHHHHHHHhCCcHH
Confidence 13444 788987655 2256554 333222 2221 11111 000000 11111111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc--cCCeE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--~g~~~ 735 (891)
+++..++..++.+.+.+.|+.. ++++. ++..+ .+.+++++. .....+.+.|.+.|+.+..+... .....
T Consensus 257 ~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~~~~~~~~~~~------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~ 328 (350)
T TIGR03537 257 VLERRKIFKRKRDLFIEFFNKV-GLEYL-YPDATFYLWVKVPSG------IDAKDYALRLLENGIVVAPGENFGSGEEGY 328 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeEEEEEEECCCC------CCHHHHHHHHHHCCEEEcCchhhCCCCCCE
Confidence 3444555566777788888775 56655 34434 455666431 23468888898899875544432 22345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~e 757 (891)
+ +++. .+++++++.++.|++
T Consensus 329 ~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 329 VRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred EEEEec--CCHHHHHHHHHHHhc
Confidence 6 7764 467888888877764
No 428
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=97.22 E-value=0.023 Score=63.69 Aligned_cols=202 Identities=10% Similarity=-0.026 Sum_probs=115.4
Q ss_pred EEecccchHHHHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE--ecCCccc-----------hhhh
Q psy852 509 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS--TTLGTTS-----------CYRK 575 (891)
Q Consensus 509 I~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv--ataGTT~-----------c~~~ 575 (891)
|++..-.+......+...|++++.+| |++.|++++++ . ...++.. +-.|++. |.++
T Consensus 89 vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~~~l~~~~~~-~---~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~ 157 (330)
T TIGR01140 89 VLVLAPTYSEYARAWRAAGHEVVELP-------DLDRLPAALEE-L---DVLVLCNPNNPTGRLIPPETLLALAARLRAR 157 (330)
T ss_pred EEEeCCCcHHHHHHHHHcCCEEEEeC-------CHHHHHhhccc-C---CEEEEeCCCCCCCCCCCHHHHHHHHHHhHhc
Confidence 55566677777777788888888887 78888888743 1 1122221 2345544 2211
Q ss_pred -----hcC----------C------CCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccC
Q psy852 576 -----SQG----------I------EYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRH 633 (891)
Q Consensus 576 -----ldG----------i------~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~ 633 (891)
+|. + ..-+-+..+++|+++.| ..+|+++..++ .+ ..+..... .
T Consensus 158 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~-~~l~~~~~-------------~ 222 (330)
T TIGR01140 158 GGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LL-ARLREALG-------------P 222 (330)
T ss_pred CCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHH-HH-HHHHhcCC-------------C
Confidence 111 0 11234556899999866 66899887653 22 22221100 0
Q ss_pred CcccccccccchHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHH
Q psy852 634 WGIPLSRRFRSLKLWFVIRTYGLSGL-QKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRK 712 (891)
Q Consensus 634 ~ti~~SRr~~aL~lW~~L~~lG~~G~-~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~ 712 (891)
++ ...+.+.++.+.+...++ ++..++..++.+++.+.|++.+.+++. ++..+.+++.+. ...+
T Consensus 223 ~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~---------~~~~ 286 (330)
T TIGR01140 223 WT------VNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP---------DAAA 286 (330)
T ss_pred CC------chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC---------CHHH
Confidence 11 112334444444444344 455567778888899999988766654 333444555543 1357
Q ss_pred HHHHHHhCCcEEEeecccc--CCeEE-EEecCCCCHHHHHHHHHHH
Q psy852 713 LLEDINASGRLHMVPASQE--QNDEV-FELQERKRKDDLAYKRSFF 755 (891)
Q Consensus 713 L~~~L~~~G~~~~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L 755 (891)
+.++|.++|+++..+.... +...+ +++.. ..++ ++++++|
T Consensus 287 l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~-~~~~~~l 329 (330)
T TIGR01140 287 LHEALARRGILIRDFDNFPGLDPRYLRFALPT--DEEN-DRLEEAL 329 (330)
T ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEEEecC--HHHH-HHHHHhh
Confidence 8899999998766555432 33456 77653 3355 8887765
No 429
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=97.21 E-value=0.027 Score=64.48 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=44.8
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.++.. .+.+|++.-..+.+|.+-| +++|.++|++||+++++|.++.|+
T Consensus 166 d~~~le~~l~~~-----~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~ 224 (400)
T PTZ00125 166 DVEALEKLLQDP-----NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGL 224 (400)
T ss_pred CHHHHHHHhCCC-----CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 899999988621 2456666666788999888 999999999999999999998653
No 430
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=97.21 E-value=0.065 Score=61.96 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|.+ +..|.++.=+..|+++.+++ +.+.+... . ...+.. +-++.......+|+.+... +
T Consensus 245 pDi~--t~sK~l~gG~~ig~~~~~~~--~~~~~~~~---~----------~~~t~~-~~pl~~aaa~a~l~~l~~~---~ 303 (406)
T PRK12381 245 PDVL--TTAKALGGGFPIGAMLTTEK--CASVMTVG---T----------HGTTYG-GNPLASAVAGKVLELINTP---E 303 (406)
T ss_pred CCEE--EehhhhhCCCceEEEEEcHH--HHhhcCCC---C----------CCCCCC-CCHHHHHHHHHHHHHHhhc---c
Confidence 4655 44688865567888887654 22222110 0 011111 1222223333444444322 4
Q ss_pred HHHHHHHHHHHHHHHhccCC-CcEEeCCC-ce-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDP-RFEISNDV-RL-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~-~~eil~~~-~~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
..++..++.++|.+.|++.. .+.++..+ .. .++.+.+.+. .......+.+.|.++|++.. +. +...+ +
T Consensus 304 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~----~~~~~~~~~~~l~~~Gv~v~-~~---g~~~lRl 375 (406)
T PRK12381 304 MLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAE----YAGKAKQISQEAAKAGVMVL-IA---GPNVVRF 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCc----hhhHHHHHHHHHHHCCcEEe-eC---CCCEEEE
Confidence 56677778888888887641 22222222 12 3445555321 01245678889999998853 21 33466 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
++...+|++|||++++.|++.+.
T Consensus 376 ~p~~~~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 376 APALNISEEEITTGLDRFARACE 398 (406)
T ss_pred eCCccCCHHHHHHHHHHHHHHHH
Confidence 88877899999999999998773
No 431
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=97.20 E-value=0.027 Score=64.76 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=109.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHH-H---HcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAA-M---MAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa-~---l~gv~v~~Vp~d~~G~mD~ 543 (891)
+++|+++++..++.+. .+ +.-.|+++...+.+....+ . ..++++..++. .|+
T Consensus 71 ~~~gg~~Ai~~~l~al----l~---------------~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~ 126 (382)
T TIGR02080 71 VTNTGMSAIHLVTTAL----LG---------------PDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDE 126 (382)
T ss_pred EEcCHHHHHHHHHHHH----cC---------------CCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCH
Confidence 5678888887776553 11 1124666666766544333 2 23456655542 378
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-----hc-----C-----C-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-----SQ-----G-----I-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-----ld-----G-----i-~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.+ ..+++. +..|... |+++ +| + + -++|-+..++|||++++
T Consensus 127 ~~l~~ai~~~t----klV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~ 202 (382)
T TIGR02080 127 QALRAALAQKP----KLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGH 202 (382)
T ss_pred HHHHHhcCcCc----eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCC
Confidence 88888886532 122222 2234332 2221 11 1 1 25799999999999988
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|++..++++.... +.....++ +-....+-.|..++ |.+-+..++++..+++..++
T Consensus 203 ~~~~~G~i~~~~~~~~~~-l~~~~~~~-----------------g~~~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a 262 (382)
T TIGR02080 203 SDVIAGAVIAKDPQVAEE-LAWWANNL-----------------GVTGGAFDSYLTLR--GLRTLVARMRLQQRNAQAIV 262 (382)
T ss_pred CCceeEEEEeCCHHHHHH-HHHHHHcc-----------------CCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHH
Confidence 76 77777766643322 11100111 11133455676655 66777888899999999999
Q ss_pred HHhccCCCcEEeCCC-----------------ceeEEEEEecC
Q psy852 675 GKVRRDPRFEISNDV-----------------RLGLVCFRLRS 700 (891)
Q Consensus 675 ~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~ 700 (891)
+.|++.|.++-+.-| -.++++|.+++
T Consensus 263 ~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 263 EYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 999998887643211 13699999964
No 432
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=97.20 E-value=0.036 Score=62.91 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=129.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+.-. +...|++..-.......++...|++++.+|.++++.+|
T Consensus 90 ~I~--it~G~~~~l~~~~~~~~~-------------------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d 148 (368)
T PRK03317 90 NVW--AANGSNEILQQLLQAFGG-------------------PGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLD 148 (368)
T ss_pred hEE--ECCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCC
Confidence 555 678888888776654311 11235555555556666777788888888887788999
Q ss_pred HHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hhh------------hh--cCC----C----CccEEEE-c
Q psy852 543 GATLRQVMQQDETMGYIPFFVST---TLGTTS--------CYR------------KS--QGI----E----YADSFNV-N 588 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~~------------~l--dGi----~----~aDSIs~-d 588 (891)
+++|++++++... ..+++++ -.|+.. |.. .+ +|. . .-+.|.+ +
T Consensus 149 ~~~l~~~~~~~~~---~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~S 225 (368)
T PRK03317 149 VDAAVAAIAEHRP---DVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRT 225 (368)
T ss_pred HHHHHHHHhccCC---CEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEe
Confidence 9999999875311 1233332 245443 110 01 111 0 0123333 6
Q ss_pred CcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH-HhhHHHHHHH
Q psy852 589 VNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-LSGLQKYIRR 665 (891)
Q Consensus 589 ~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-~~G~~~~i~~ 665 (891)
..|.++.| .-+|+++.. ++ +.+.+. .... +. .+ .+.+.++...+. .+.+.+.+++
T Consensus 226 fSK~~g~~GlRiG~~~~~-~~-~~~~l~~~~~~--------------~~--~s----~~~~~a~~~~l~~~~~~~~~~~~ 283 (368)
T PRK03317 226 MSKAFAFAGGRLGYLAAA-PA-VVDALRLVRLP--------------YH--LS----AVTQAAARAALRHADELLASVAA 283 (368)
T ss_pred chhhhccchhhhhhhhCC-HH-HHHHHHhcCCC--------------CC--CC----HHHHHHHHHHhhCHHHHHHHHHH
Confidence 77877644 345666542 22 212111 0000 10 11 222333333332 2344555666
Q ss_pred HHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-EEecCCCC
Q psy852 666 HCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-FELQERKR 744 (891)
Q Consensus 666 ~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~sv~~~tT 744 (891)
..+..+++.+.|+.. ++++. ++..+.+.|.-.+ ....+.+.|.++|+.+. +.. ...++ ++++ +
T Consensus 284 ~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~~~Gv~v~-~~~--~~~~iRi~~~---~ 347 (368)
T PRK03317 284 LRAERDRVVAWLREL-GLRVA-PSDANFVLFGRFA--------DRHAVWQGLLDRGVLIR-DVG--IPGWLRVTIG---T 347 (368)
T ss_pred HHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEeccC--------CHHHHHHHHHHCCEEEE-eCC--CCCeEEEecC---C
Confidence 677777888888875 67654 3455555442111 24678888888998754 222 23456 7765 6
Q ss_pred HHHHHHHHHHHHHHH
Q psy852 745 KDDLAYKRSFFVRML 759 (891)
Q Consensus 745 ~edId~li~~L~ei~ 759 (891)
.+++++++++|+++.
T Consensus 348 ~~~~~~~~~~l~~~~ 362 (368)
T PRK03317 348 PEENDAFLAALAEVL 362 (368)
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999998875
No 433
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=97.20 E-value=0.0073 Score=68.25 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=64.1
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-........+...|.+++.||+++++.+|++.+++ + .. +-+|.++.-+|.||.+-|.+++.++++..
T Consensus 105 vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~~------~~li~i~nP~NPTG~~~~~~~l~~l~~~~ 176 (354)
T PRK04635 105 IACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQ-L-DG------AKLVFICNPNNPTGTVIDRADIEQLIEMT 176 (354)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHh-c-cC------CCEEEEeCCCCCCCccCCHHHHHHHHHhC
Confidence 5555555555555667778899999998888999999873 3 21 34677789999999999999999999864
Q ss_pred -CCceeeeccc
Q psy852 225 -DVWLHVDGAY 234 (891)
Q Consensus 225 -~~~lHvDaA~ 234 (891)
+++|.+|.||
T Consensus 177 ~~~~vivDeay 187 (354)
T PRK04635 177 PDAIVVVDEAY 187 (354)
T ss_pred CCcEEEEeCch
Confidence 6888899998
No 434
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=97.20 E-value=0.037 Score=63.71 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=68.4
Q ss_pred ccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCC-ChHHHHHHHHcCC------------eEEEEecCCCC
Q psy852 109 LGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEA-HSCVEKAAMMAFV------------RLKILEPDDKN 175 (891)
Q Consensus 109 ~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~-H~Sv~kaa~~~~~------------~v~~V~~d~~g 175 (891)
+.+|+. .|...+.+||..... +.|....+..|++-... |-+..-++.+.+. .+..++-+
T Consensus 100 ~~SGs~-A~e~ai~~a~~~~~~----~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (401)
T TIGR01885 100 MNTGAE-AVETAIKLARKWGYK----VKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN--- 171 (401)
T ss_pred eCccHH-HHHHHHHHHHHHhhh----hcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC---
Confidence 456764 455566667664211 01111224446655555 5455555544321 12333322
Q ss_pred cccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccC
Q psy852 176 SLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 176 ~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG 236 (891)
|+++|++.+++. +.....|++--..+++|.+-| +++|.++|++||+++.+|-++.|
T Consensus 172 --d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g 231 (401)
T TIGR01885 172 --NLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG 231 (401)
T ss_pred --CHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 689999988643 122344445445556688887 99999999999999999999855
No 435
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=97.19 E-value=0.11 Score=59.37 Aligned_cols=258 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc--------cCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccce-EEEecccchH
Q psy852 447 ELAKLFEGKVR--------RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKL-MAYCSKEAHS 517 (891)
Q Consensus 447 elAr~l~~~L~--------~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~-vI~~S~~aH~ 517 (891)
++-+.+++.+. -.++ +|+ +|.|+++++..++.+.-. +.. .|++..-...
T Consensus 70 ~Lr~aia~~~~~~~~~~~~v~~~-~I~--it~Ga~~al~~~~~~~~~-------------------~g~~~Vlv~~P~y~ 127 (374)
T PRK02610 70 ALKQAIAEYVNESAAGSSQITPA-NIS--VGNGSDELIRSLLIATCL-------------------GGEGSILVAEPTFS 127 (374)
T ss_pred HHHHHHHHHhCccccccCCCCHH-HEE--EcCChHHHHHHHHHHHcC-------------------CCCCeEEEcCCChH
Q ss_pred HHHHHHHHcCceEEEecCCCC-CCcCHHHHHHHHHhhhhcCCccEEEEec---CCccc----------------------
Q psy852 518 CVEKAAMMAFVRLKILEPDDK-NSLRGATLRQVMQQDETMGYIPFFVSTT---LGTTS---------------------- 571 (891)
Q Consensus 518 Sv~Kaa~l~gv~v~~Vp~d~~-G~mD~~~Le~aI~~d~~~g~ip~~Vvat---aGTT~---------------------- 571 (891)
....++...|.+++.+|.+++ +.+|+++|++++++....+...+++++- .|++.
T Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~ 207 (374)
T PRK02610 128 MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEA 207 (374)
T ss_pred HHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEecc
Q ss_pred --------hhhhhcCCCCccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccc
Q psy852 572 --------CYRKSQGIEYADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRF 642 (891)
Q Consensus 572 --------c~~~ldGi~~aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~ 642 (891)
....+...+.+=. .-++.|.++.| .=+|+++. ++..+.........| ..
T Consensus 208 Y~~~~~~~~~~~~~~~~~~iv-i~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~--------------------~~ 265 (374)
T PRK02610 208 YFEFSQTTLVGELAQHPNWVI-LRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRLPY--------------------NL 265 (374)
T ss_pred ccccCccchHHHHhcCCCEEE-EEecchhccCcccceeeeec-CHHHHHHHHHhcCCC--------------------CC
Q ss_pred cchHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCC
Q psy852 643 RSLKLWFVIRTYGL-SGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721 (891)
Q Consensus 643 ~aL~lW~~L~~lG~-~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G 721 (891)
..+.+.++...++. +.+.+.+++..+.++.+.+.|++++++.+. +...+-+.+++++ ......+.+.|.+.|
T Consensus 266 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~------~~~~~~~~~~l~~~g 338 (374)
T PRK02610 266 PSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLSQ------DAALAALHQALKAQG 338 (374)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCCC------CCCHHHHHHHHHHCC
Q ss_pred cEEEeeccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHHHHH
Q psy852 722 RLHMVPASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLGLVC 763 (891)
Q Consensus 722 ~~~~s~s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~~~~ 763 (891)
+.+.. ....+ ++++ +.++++++++.|++++..++
T Consensus 339 i~v~~-----~~~~lRls~~---~~~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 339 TLVRH-----TGGGLRITIG---TPEENQRTLERLQAALTQLE 373 (374)
T ss_pred EEEEe-----CCCeEEEeCC---CHHHHHHHHHHHHHHHhhcC
No 436
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=97.18 E-value=0.036 Score=64.59 Aligned_cols=256 Identities=7% Similarity=0.038 Sum_probs=132.6
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecC--CCCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEP--DDKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~--d~~G~ 540 (891)
+|+ +|+|+++++..++.+.-. +.-.|+++.-..+.....+.+.+.+++.++. +.++.
T Consensus 119 ~v~--it~G~~~al~l~~~~l~~-------------------~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~ 177 (430)
T PLN00145 119 DIY--LTAGCAQAIEIIMSVLAQ-------------------PGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWE 177 (430)
T ss_pred hEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCc
Confidence 566 789999998877665310 1123666666666666677788888888876 34678
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCCCCcc------------------
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGIEYAD------------------ 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi~~aD------------------ 583 (891)
+|+++|++++++.+. -++++ +-.|++. |.++ .|.+ +.|
T Consensus 178 ~d~~~l~~~~~~~~~----~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~-Y~~~~~~~~~~~~~~~~~~~~ 252 (430)
T PLN00145 178 VDLEGVEALADENTV----AMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEV-YDHLTFGSKPFVPMGVFGEVA 252 (430)
T ss_pred CCHHHHHHHhCcCce----EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecc-chhhccCCCCccchhhhcccC
Confidence 999999998876422 22222 2345544 2221 1111 001
Q ss_pred -EEE-EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---Hh
Q psy852 584 -SFN-VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LS 657 (891)
Q Consensus 584 -SIs-~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~ 657 (891)
-|+ -+..|..++| .=+|+++..++..+....... ..+. ....... ....+.+++....+. ..
T Consensus 253 ~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~-~~~~-------~~~~~~~----~~~~~~Q~a~~~~l~~~~~~ 320 (430)
T PLN00145 253 PVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVV-DSIR-------NYLNIST----DPATFVQGAIPQIIANTKEE 320 (430)
T ss_pred cEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHH-HHHH-------HHhcccC----CCCHHHHHHHHHHHhcCHHH
Confidence 111 1244543333 334555443221110000000 0000 0000000 011233444444443 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHH-HhCCcEEEeeccccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDI-NASGRLHMVPASQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L-~~~G~~~~s~s~~~g~~~ 735 (891)
-+++..+...+.++.+.+.|+.++++.+...|+ ..-+.+++......... ....+..+| .+.|+++.-++......+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~fg~~~~ 399 (430)
T PLN00145 321 FFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIK-DDMDFCCKLAKEESVVVLPGSALGMKNW 399 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCC-CHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 466777777888899999999888887654443 44555555321000000 234555555 456777655554444556
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ +++. ...++++..++.|.+.+
T Consensus 400 lRis~~--~~~~~l~~al~rl~~~~ 422 (430)
T PLN00145 400 LRITFA--IDPPSLEDGLERLKSFC 422 (430)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHH
Confidence 7 8876 35677777777666554
No 437
>PRK08636 aspartate aminotransferase; Provisional
Probab=97.18 E-value=0.011 Score=67.94 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=69.0
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecC--CCCcccHHHHHHHHHhhhhc-CCcceEEEeecccCccccccCH---HHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNSLRGATLRQVMQQDETM-GYIPFFVSTTLGTTSCCSFDNL---AEI 217 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~-g~~p~~V~~t~Gtt~~GavDpl---~~I 217 (891)
.|++.+-+.+....++...|.+++.|+++ ++..+|++.|...+++..++ ...+.+++.+..+|.||.+-+. ++|
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l 200 (403)
T PRK08636 121 VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERL 200 (403)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHH
Confidence 46666666666666667778899999875 44689998776555543322 2235678888889999999666 677
Q ss_pred HHHHHHcCCceeeeccccCC
Q psy852 218 GPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 218 ~~i~~~~~~~lHvDaA~GG~ 237 (891)
+++|++++++|.+|=+|+.+
T Consensus 201 ~~~a~~~~~~II~De~Y~~l 220 (403)
T PRK08636 201 VALAKKERFYIISDIAYADI 220 (403)
T ss_pred HHHHHHcCcEEEEeccchhh
Confidence 78899999999999999543
No 438
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=97.18 E-value=0.03 Score=63.73 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCcEEeCC--CceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRD-PRFEISND--VRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~-~~~eil~~--~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
+.+++..++.+++.+.|++. +++..+.+ ....++.+.+.+ ....+.+.|.++|++... .+...+
T Consensus 287 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~--------~~~~~~~~l~~~gv~v~~----~g~~~lR 354 (377)
T PRK02936 287 SFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE--------EVAPVIEQLREEGLLVLS----AGPNVIR 354 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc--------hHHHHHHHHHHCCeEEec----CCCCEEE
Confidence 44556666777777777652 22222211 223466677642 156788888889977432 233566
Q ss_pred EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei 758 (891)
++++...++++|+++++.|++.
T Consensus 355 i~p~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 355 LLPPLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred EECCcccCHHHHHHHHHHHHHh
Confidence 8887788999999999998764
No 439
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=97.17 E-value=0.0053 Score=68.96 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=66.5
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-++......+...|.+++.|+.++++.+|+++|++.+.+. -+++++..+|.||.+-+.++|.++++ +
T Consensus 97 V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-------~~v~~~~P~NPtG~~~~~~~l~~i~~-~ 168 (337)
T PRK03967 97 IVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKAKNA-------SAVFICSPNNPTGNLQPEEEILKVLE-T 168 (337)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhccCC-------CEEEEeCCCCCCCCCCCHHHHHHHHh-c
Confidence 666666666555556677889999999888899999998764221 24556778999999999999999995 6
Q ss_pred CCceeeeccccC
Q psy852 225 DVWLHVDGAYAG 236 (891)
Q Consensus 225 ~~~lHvDaA~GG 236 (891)
++++.+|.+|+.
T Consensus 169 ~~~ii~De~y~~ 180 (337)
T PRK03967 169 GKPVVLDEAYAE 180 (337)
T ss_pred CCEEEEECchhh
Confidence 999999999954
No 440
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=97.16 E-value=0.034 Score=63.29 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=40.9
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCcccccc----CHHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD----NLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD----pl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+.+. +.+|++....+..|.+. .+++|.++|++||+++.+|-++.|+
T Consensus 156 d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~ 213 (377)
T PRK02936 156 DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGI 213 (377)
T ss_pred CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 789999888643 34555555556666554 3999999999999999999999663
No 441
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=97.16 E-value=0.064 Score=61.01 Aligned_cols=90 Identities=8% Similarity=0.045 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc-cCCeEE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ-EQNDEV 736 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~-~g~~~l 736 (891)
-+.+.++...+.++++.+.|++.+++..+.++..+-+.++++ ..+++.+.|.+.|+.+..+... .....+
T Consensus 270 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~---------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~ 340 (364)
T PRK04781 270 VTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD---------DAEAAFQALLAAGVVVRDQRAAPRLSDAL 340 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC---------CHHHHHHHHHHCCeEEeeCCCCCCCCCeE
Confidence 345566667778889999999887775444556667777764 1357788888999886554422 123356
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
++++ +.++.++++++|+++.
T Consensus 341 Ris~~---~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 341 RITLG---TPEQNDRVLAALQRTQ 361 (364)
T ss_pred EEeCC---CHHHHHHHHHHHHHHH
Confidence 8876 6899999999998753
No 442
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=97.16 E-value=0.0053 Score=69.40 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=67.8
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-++......+...|.+++.++. +++.+|+++|++.+++. +.+|+++..+|.+|.+-|+++|.++++.+
T Consensus 111 vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 183 (367)
T PRK02731 111 VIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGV 183 (367)
T ss_pred EEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhC
Confidence 666666665555555667789999988 45788999999988642 34666788999999999999999999875
Q ss_pred --CCceeeeccccCC
Q psy852 225 --DVWLHVDGAYAGS 237 (891)
Q Consensus 225 --~~~lHvDaA~GG~ 237 (891)
++++.+|.+|..+
T Consensus 184 ~~~~~li~De~y~~~ 198 (367)
T PRK02731 184 PPDVLVVLDEAYAEY 198 (367)
T ss_pred CCCcEEEEECcHHHh
Confidence 8999999999543
No 443
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.16 E-value=0.0063 Score=70.25 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-----CCcCH
Q psy852 469 RSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-----NSLRG 543 (891)
Q Consensus 469 tsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-----G~mD~ 543 (891)
+.|.|-+|..++.++-. +.-.|++...+|-|+..++.+.|...+.|++..+ +.+++
T Consensus 88 vnGsT~g~~a~i~a~~~-------------------~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~ 148 (417)
T PF01276_consen 88 VNGSTSGNQAMIMALCR-------------------PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGGISP 148 (417)
T ss_dssp SSHHHHHHHHHHHHHTT-------------------TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-G
T ss_pred ecCchHHHHHHHHHhcC-------------------CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccCCCh
Confidence 34667778877776521 2335999999999999999999999888876321 35666
Q ss_pred -----HHHHHHHHhhhhcCCccEEEEecC----Cccc--------hhh-----hhcC----------------CCCcc--
Q psy852 544 -----ATLRQVMQQDETMGYIPFFVSTTL----GTTS--------CYR-----KSQG----------------IEYAD-- 583 (891)
Q Consensus 544 -----~~Le~aI~~d~~~g~ip~~Vvata----GTT~--------c~~-----~ldG----------------i~~aD-- 583 (891)
+.++++|++....+. +-+|+.+. |.+. |++ ++|. -.+||
T Consensus 149 ~~~~~~~i~~~l~~~p~~k~-~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~ 227 (417)
T PF01276_consen 149 DEFNEEDIEEALKEHPDAKA-PRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRP 227 (417)
T ss_dssp GGGSHHHHHHHHHHCTTCHC-ESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-C
T ss_pred hhhhHHHHHHHHHhCccccC-ceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccc
Confidence 999999998644322 33333333 4433 322 1111 24578
Q ss_pred -----EEEEcCcccCCcccccEEEEEeCCc
Q psy852 584 -----SFNVNVNKWLLTAFDSSCLWVADRY 608 (891)
Q Consensus 584 -----SIs~d~HK~L~~P~g~G~llvR~~~ 608 (891)
-++-|.||.|.+--.++++.+++..
T Consensus 228 ~~~~~~vvqS~HKtL~altQts~lh~~~~~ 257 (417)
T PF01276_consen 228 NDPGIIVVQSTHKTLPALTQTSMLHVKGDR 257 (417)
T ss_dssp TSBEEEEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred cccceeeeechhhcccccccceEEEecCCC
Confidence 9999999999999999999999885
No 444
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=97.16 E-value=0.05 Score=61.55 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=130.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ ++.|+++++..++.+. .. ++ +++.+. ........++..|++++.+|.+++ ..
T Consensus 74 ~i~--it~Ga~~~l~~~~~~l-----~~--------------g~-viv~~P-~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 130 (356)
T PRK08056 74 WIL--AGNGETESIFAVVSGL-----KP--------------RR-AMIVTP-GFAEYRRALQQVGCEIRRYSLREADGWQ 130 (356)
T ss_pred hEE--ECCCHHHHHHHHHHHh-----CC--------------CC-EEEeCC-CcHHHHHHHHHcCCeEEEEecccccCCC
Confidence 566 6778888877665432 00 12 233332 233445566788999999998643 34
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC------CC--CccE
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG------IE--YADS 584 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG------i~--~aDS 584 (891)
+| +++++.+.+. ...++++ +-.|.+. |.++ + ++ +. .-+-
T Consensus 131 ~~-~~~~~~~~~~----~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i 205 (356)
T PRK08056 131 LT-DAILEALTPD----LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLW 205 (356)
T ss_pred cc-HHHHHhccCC----CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEE
Confidence 44 3454555321 1222232 2345443 2221 1 11 00 1234
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-HHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQKY 662 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~~~ 662 (891)
+..+.+|+++.| .-+|+++..+...+......... ++. ..+.++++...+.... ..+.
T Consensus 206 ~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~--------------~~~------~~~~~~~a~~~l~~~~~~~~~ 265 (356)
T PRK08056 206 VLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMP--------------WSI------NAFAALAGEVILQDRAYQQAT 265 (356)
T ss_pred EEEechhhccCcchhheeeecCCHHHHHHHHHhCCC--------------Cch------hHHHHHHHHHHhCCHHHHHHH
Confidence 668899999866 56888877544332221111100 111 1122333333332222 3444
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccC--CeEE-EEe
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ--NDEV-FEL 739 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g--~~~l-~sv 739 (891)
.+...+.++++.+.|++++++.+. ++..+-+.+++.. ...++.+.|.+.|+....+....+ ...+ +++
T Consensus 266 ~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~ 336 (356)
T PRK08056 266 WQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCER--------PDIDLQRALLTQRILIRSCANYPGLDSRYYRVAI 336 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCC--------ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE
Confidence 556678888899999888887765 4456666666642 134678888889987555543322 2356 887
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ei~ 759 (891)
+ +.++.+.++++|+++.
T Consensus 337 ~---~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 337 R---SAAENERLLAALRNVL 353 (356)
T ss_pred c---CHHHHHHHHHHHHHHH
Confidence 6 6789999999998653
No 445
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=97.15 E-value=0.042 Score=62.31 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccc----cCHHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF----DNLAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav----Dpl~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|+++|++.+.+. +.+|+++..++.+|.+ +++++|.++|+++++++++|.++.|+
T Consensus 159 d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~ 216 (379)
T TIGR00707 159 DIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGI 216 (379)
T ss_pred CHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 899999988653 2355566666666754 34899999999999999999999653
No 446
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=97.15 E-value=0.0081 Score=68.83 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=65.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-........+...|.+++.|+++++ ..+|+++|++.+.+.. -+|+++-.+|.||.+-+ +++|++
T Consensus 119 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~~p~NPtG~~~s~~~~~~l~~ 192 (393)
T TIGR03538 119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRC------QLLFVCSPGNPTGAVLSLDTLKKLIE 192 (393)
T ss_pred EEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcc------eEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 555544555555556677889999999754 4689999998876532 35555678999999977 788888
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|.+|-+|+.
T Consensus 193 ~a~~~~~~ii~De~Y~~ 209 (393)
T TIGR03538 193 LADQYGFIIASDECYSE 209 (393)
T ss_pred HHHHCCEEEEECcchhh
Confidence 99999999999999953
No 447
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=97.14 E-value=0.082 Score=60.33 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=56.0
Q ss_pred eEEEecCCCChHHHHHHH--H--cCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHH
Q psy852 143 LMAYCSKEAHSCVEKAAM--M--AFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIG 218 (891)
Q Consensus 143 ~~v~~S~~~H~Sv~kaa~--~--~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~ 218 (891)
-.++++...|+.-...++ . .|.+++.++.+ |+++|+++...+ .+.|.+...++.-+.++++.+|.
T Consensus 165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~------~~gv~vQyP~~~G~~~~d~~~l~ 233 (450)
T COG0403 165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGD------VFGVLVQYPNTFGIVEEDLRALI 233 (450)
T ss_pred ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccC------eEEEEEecCCCCCccchhHHHHH
Confidence 349999999998877774 2 34677776666 888888872223 47899999886544888899999
Q ss_pred HHHHHcCCc
Q psy852 219 PVAKEFDVW 227 (891)
Q Consensus 219 ~i~~~~~~~ 227 (891)
+.+++.+..
T Consensus 234 ~~~h~~~al 242 (450)
T COG0403 234 EAAHSAGAL 242 (450)
T ss_pred HHHhhcCCE
Confidence 999999753
No 448
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=97.13 E-value=0.019 Score=65.88 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=70.0
Q ss_pred CccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 581 YADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 581 ~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
++|-+.+++|||+++|-+ .|+++.++++.... +. .++. ..+....+...|..+ .|...
T Consensus 185 gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~-~~----~~~~-------------~~G~~~~~~~~~l~~--~gl~t 244 (380)
T PRK06176 185 GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE-IA----FFQN-------------AIGGVLGPQDSWLLQ--RGIKT 244 (380)
T ss_pred CCCEEEecCceeccCCccceeeEEEecHHHHHHH-HH----HHHH-------------HhcCCCCHHHHHHHH--hccCc
Confidence 689999999999999865 66666665432211 11 0000 001111223346554 36777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEEecCCcchhhhhhHHHHHHHHHh
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFRLRSENNLIADQNNRKLLEDINA 719 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~ 719 (891)
+..++++..+++..+.+.|++.|.++-+.-| -.++++|.+++. +...++++.|+-
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~------~~~~~f~~~l~~ 316 (380)
T PRK06176 245 LGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND------SEAVAFVESLKL 316 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH------HHHHHHHHcCCc
Confidence 8889999999999999999998887543211 136999999632 233455555543
No 449
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=97.13 E-value=0.1 Score=59.06 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcE
Q psy852 645 LKLWFVIRTYGLSG-LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRL 723 (891)
Q Consensus 645 L~lW~~L~~lG~~G-~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~ 723 (891)
+.++.....+.... +.+..+...+.++++.+.|++.+++++.. +..+-+++++++ ..++.+.|.+.|+.
T Consensus 248 ~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~g~f~~~~~~~---------~~~~~~~l~~~gI~ 317 (354)
T PRK06358 248 FADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYK-PSVNFIFFKLEK---------PIDLRKELLKKGIL 317 (354)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC-CcceEEEEEcCc---------hHHHHHHHHHCCeE
Confidence 44455555554333 36666777788889999998887776654 455666666642 25788888889987
Q ss_pred EEeecccc--CCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 724 HMVPASQE--QNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 724 ~~s~s~~~--g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+..+.... +...+ ++++ +.++.++++++|+++.
T Consensus 318 v~~~~~f~~~~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 318 IRSCSNYRGLDENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred EEECCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 66555442 23456 8876 7789999999998764
No 450
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=97.13 E-value=0.086 Score=60.46 Aligned_cols=249 Identities=11% Similarity=0.077 Sum_probs=130.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~m 541 (891)
.|+ +++|+++++..++.+.- . +.-.|++..-.+......+...|.+++.+|.+++ +.+
T Consensus 93 ~i~--it~G~~~al~~~~~~~~----~---------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (391)
T PRK07309 93 EIL--VTIGATEALSASLTAIL----E---------------PGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVL 151 (391)
T ss_pred cEE--EeCChHHHHHHHHHHhc----C---------------CCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcC
Confidence 455 68899998887765421 0 1123666666777777788888999999998764 579
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCC---------C--C-----cc--E
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGI---------E--Y-----AD--S 584 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi---------~--~-----aD--S 584 (891)
|+++|++++++... +...++++ +-.|++. |.++ +|.+ . . .+ -
T Consensus 152 d~~~l~~~~~~~~~-~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i 230 (391)
T PRK07309 152 TPEMLEKAILEQGD-KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTI 230 (391)
T ss_pred CHHHHHHHhhccCC-CeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEE
Confidence 99999999975321 11122322 3456543 3221 1111 0 0 01 2
Q ss_pred EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH--hhHHH
Q psy852 585 FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL--SGLQK 661 (891)
Q Consensus 585 Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~--~G~~~ 661 (891)
..-+.+|.++.| .-+|+++...+ .+.. +.....|.. .....+.+....+.+.. .-...
T Consensus 231 ~~~S~SK~~g~~GlRvG~~v~~~~-~~~~-~~~~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~~~~ 291 (391)
T PRK07309 231 LINGLSKSHAMTGWRIGLIFAPAE-FTAQ-LIKSHQYLV-----------------TAATTMAQFAAVEALTNGKDDALP 291 (391)
T ss_pred EEecChhhccCccceeEEEEeCHH-HHHH-HHHHHhhcc-----------------cCCChHHHHHHHHHHhCChhHHHH
Confidence 334677776655 22566654322 2221 110001110 00111222222233221 11222
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecc--ccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPAS--QEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~--~~g~~~l-~ 737 (891)
..++..+.++++.+.|++. ++++..+.....++.++++. .+.....+.++|. +.|+.+..+.. ..+...+ +
T Consensus 292 ~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l~~~----~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi 366 (391)
T PRK07309 292 MKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKIPAG----YNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRL 366 (391)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEECCCC----CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence 3344456677788888776 56655432222344455422 1123456776654 57877554442 2234456 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
++.. +.++++..++.|.+.+
T Consensus 367 ~~~~--~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 367 SYAA--SMETIKEAMKRLKEYM 386 (391)
T ss_pred EecC--CHHHHHHHHHHHHHHH
Confidence 8764 5788888888887665
No 451
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=97.13 E-value=0.056 Score=62.80 Aligned_cols=306 Identities=14% Similarity=0.089 Sum_probs=158.5
Q ss_pred CChhHH-HHHHHHHHhcHHHHHHHHHHHH-----------------HHHHHHHHhhccCCccccccCCCCCcchhHHHHH
Q psy852 419 RRFRSL-KLWFVIRTYGLSGLQKYIRRHC-----------------ELAKLFEGKVRRDPRFEISNDVRSSASECIFVCM 480 (891)
Q Consensus 419 r~~~~l-~~w~~l~~~g~~G~~~ii~~~l-----------------elAr~l~~~L~~~~~~eVv~~itsggsean~~al 480 (891)
|=.++. .+|.+.--+|..-+.+.+++.+ +||+.+.+..-+-+--.|. ++.|||||+=+|+
T Consensus 45 r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vF--f~~sGSeAvEtAl 122 (449)
T COG0161 45 RYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVF--FTDSGSEAVETAL 122 (449)
T ss_pred EEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEE--EeCCchHHHHHHH
Confidence 334554 5788888888888887777764 4566666655421112344 7899999999999
Q ss_pred HHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcC-------------ceEEEecCC------CCCCc
Q psy852 481 LAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF-------------VRLKILEPD------DKNSL 541 (891)
Q Consensus 481 ~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~g-------------v~v~~Vp~d------~~G~m 541 (891)
..|+..+..+.+. ..+-.|-....-|=+-.-++.++| ..+..+|.- ..+.-
T Consensus 123 Kma~qY~~~~G~p----------~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~ 192 (449)
T COG0161 123 KMALQYWRARGQP----------QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192 (449)
T ss_pred HHHHHHHHhcCCC----------cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCC
Confidence 9999998765431 111112112222322222221221 223334331 11222
Q ss_pred C------HHHHHHHHHhhhhcCCccEEEEec--CCc---cc-------------hhhh------------------hcCC
Q psy852 542 R------GATLRQVMQQDETMGYIPFFVSTT--LGT---TS-------------CYRK------------------SQGI 579 (891)
Q Consensus 542 D------~~~Le~aI~~d~~~g~ip~~Vvat--aGT---T~-------------c~~~------------------ldGi 579 (891)
+ .+.|++.|.+... ..+..++++ .|+ .. |.++ +-+.
T Consensus 193 ~~~~~~~a~~le~~i~~~g~--~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~ 270 (449)
T COG0161 193 DEEFAEAADELEALILEHGP--ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC 270 (449)
T ss_pred hHHHHHHHHHHHHHHHhcCc--ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh
Confidence 3 4456666665321 223333332 233 21 5442 1111
Q ss_pred CC----ccEEEEcCcccC-CcccccEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHH
Q psy852 580 EY----ADSFNVNVNKWL-LTAFDSSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT 653 (891)
Q Consensus 580 ~~----aDSIs~d~HK~L-~~P~g~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~ 653 (891)
+. =|-|++. |.+ ++-.+.|++++.++ +-+++... ..-+.|+ +|.. +-+..+...-.+|+.
T Consensus 271 e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~--I~~~~~~~~~~~f~HG---------~TYs-ghPlacAaAla~L~i 336 (449)
T COG0161 271 EHAGIVPDILCLA--KGLTGGYLPLSAVLTSDR--IYEAFSDGDAGAFMHG---------HTYS-GNPLACAAALANLDI 336 (449)
T ss_pred hhcCCCCCeeeec--ccccccchhhHhHhhhHH--HHHHHhcccCCeeccC---------Cccc-cCHHHHHHHHHHHHH
Confidence 11 2666554 655 23445577888766 22333322 1112222 1221 122222333345555
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcc-CCCcEEeCCCc-ee-EEEEEecCCcchhh---hhhHHHHHHHHHhCCcEEEee
Q psy852 654 YGLSGLQKYIRRHCELAKLFEGKVRR-DPRFEISNDVR-LG-LVCFRLRSENNLIA---DQNNRKLLEDINASGRLHMVP 727 (891)
Q Consensus 654 lG~~G~~~~i~~~~~lA~~L~~~L~~-~~~~eil~~~~-~~-iV~Fr~~~~~~~~~---d~ln~~L~~~L~~~G~~~~s~ 727 (891)
+-.+++.+. ..++..+|.++|++ +++...+.+.+ .+ +..+.+........ .....++...+.++|.+. .+
T Consensus 337 ~e~e~l~~~---~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~i-Rp 412 (449)
T COG0161 337 LEEEDLLER---VAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI-RP 412 (449)
T ss_pred HHhcCHHHH---HHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEE-ee
Confidence 556665554 45788888888887 44333444432 23 33455543321111 234567888888999873 33
Q ss_pred ccccCCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 728 ASQEQNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 728 s~~~g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
. +. ++ +++-.-+|+++||++++.+.+.++
T Consensus 413 ~---g~-~i~~~PPliit~~eid~l~~~l~~al~ 442 (449)
T COG0161 413 L---GD-VIYLMPPLIITREEIDELVDALREALD 442 (449)
T ss_pred c---CC-EEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 2 22 44 666566899999999999998875
No 452
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.12 E-value=0.057 Score=62.98 Aligned_cols=68 Identities=13% Similarity=0.349 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC----------------c--eeEEEEEecCCcchh
Q psy852 644 SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV----------------R--LGLVCFRLRSENNLI 705 (891)
Q Consensus 644 aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~----------------~--~~iV~Fr~~~~~~~~ 705 (891)
....|..++ |...+..++++..++|+++++.|+++|.++-+.-| . .++++|.+++.
T Consensus 274 ~~~a~l~lr--gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~---- 347 (425)
T PRK06084 274 PFNAFLILQ--GLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGG---- 347 (425)
T ss_pred HHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCC----
Confidence 445565544 88889999999999999999999999987643211 1 35999999743
Q ss_pred hhhhHHHHHHHHH
Q psy852 706 ADQNNRKLLEDIN 718 (891)
Q Consensus 706 ~d~ln~~L~~~L~ 718 (891)
.....++++.|.
T Consensus 348 -~~~~~~f~~~l~ 359 (425)
T PRK06084 348 -QAAGARFIDALK 359 (425)
T ss_pred -HHHHHHHHHhCC
Confidence 122345566654
No 453
>PRK06290 aspartate aminotransferase; Provisional
Probab=97.12 E-value=0.057 Score=62.61 Aligned_cols=251 Identities=6% Similarity=-0.080 Sum_probs=130.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
.|+ +|+|+++++..++.+.- + +.-.|++..-........+...|.+++.+|.|++ +.
T Consensus 108 ~I~--it~Gs~~al~~~~~~~~----~---------------~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 166 (410)
T PRK06290 108 EVI--HSIGSKPALAMLPSCFI----N---------------PGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFL 166 (410)
T ss_pred eEE--EccCHHHHHHHHHHHhC----C---------------CCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCc
Confidence 355 67888888766654321 0 1123555555555666677788999999999753 56
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC----------CCCc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG----------IEYA 582 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG----------i~~a 582 (891)
+|+++|++.+.+.. ..++++ +-.|++. |.++ .++ ....
T Consensus 167 ~d~~~l~~~~~~~~----k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~ 242 (410)
T PRK06290 167 PDLDSIPKDIKEKA----KLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEV 242 (410)
T ss_pred CCHHHHHHhhcccc----eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCcccc
Confidence 79999998886421 223333 2355554 2221 011 0011
Q ss_pred cEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh-HH
Q psy852 583 DSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG-LQ 660 (891)
Q Consensus 583 DSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G-~~ 660 (891)
+-+.-+..|.++.|- =+|+++. ++..+.........+ ....+ .+.+.++...+-... ++
T Consensus 243 ~I~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~--------------~~~~~----~~~q~aa~~~l~~~~~~~ 303 (410)
T PRK06290 243 GVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNN--------------DSGQF----IAIQKAGIYALDHPEITE 303 (410)
T ss_pred EEEEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhcc--------------ccCCc----HHHHHHHHHHhhCcHHHH
Confidence 222333455544331 2344332 221111100000000 00000 122223333332222 34
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEE-EEecCCcchhh-hhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVC-FRLRSENNLIA-DQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~-Fr~~~~~~~~~-d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
+..++..+.++++.+.|++. ++.+.. ++.+... .++++...... .....++.+.|.++|.+.+.+....+ ..+ +
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~-g~~~~~-p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~-~~lRi 380 (410)
T PRK06290 304 KIREKYSRRLDKLVKILNEV-GFKAEM-PGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG-HFLRF 380 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeecC-CCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc-CeEEE
Confidence 45555677788888999886 566543 4445443 46643210000 01356788999888776555433333 345 7
Q ss_pred EecC-CCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQE-RKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~-~tT~edId~li~~L~ei~~ 760 (891)
++.. ..++++.++++++|++.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 381 SVTFEAKDEEEEDRILEEIKRRLS 404 (410)
T ss_pred EEEcccccccchhHHHHHHHHHHh
Confidence 7654 6689999999999988775
No 454
>PRK07681 aspartate aminotransferase; Provisional
Probab=97.11 E-value=0.09 Score=60.43 Aligned_cols=243 Identities=8% Similarity=-0.031 Sum_probs=136.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
.|+ +|+|++++...++.+. . .+...|++..-.++.....+...|++++.+|.+++ ..
T Consensus 95 ~I~--it~G~~~al~~~~~~~----~---------------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 153 (399)
T PRK07681 95 EVL--LLMGSQDGLVHLPMVY----A---------------NPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFL 153 (399)
T ss_pred eEE--ECCCcHHHHHHHHHHh----C---------------CCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCc
Confidence 455 6788888877665432 1 11234666667777788888889999999999754 46
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------CCCc-c
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------IEYA-D 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i~~a-D 583 (891)
+|+++|++++.+.. ..++++ +-.|++. |.++ .++ +... |
T Consensus 154 ~d~~~l~~~~~~~~----k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T PRK07681 154 PDLELIPEEIADKA----KMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKE 229 (399)
T ss_pred CCHHHHHHhccccc----eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcc
Confidence 89999998885421 122333 2345554 3221 011 0101 1
Q ss_pred -EEEE-cCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhh
Q psy852 584 -SFNV-NVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSG 658 (891)
Q Consensus 584 -SIs~-d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G 658 (891)
-|.+ +..|.++.| .=+|+++. +++.+ +.+.....+. .++ .+ .+.++++...+ +..-
T Consensus 230 ~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~-~~~~~~~~~~-----------~~~--~s----~~~q~~~~~~l~~~~~~ 290 (399)
T PRK07681 230 VGVEINSLSKSYSLAGSRIGYMIG-NEEIV-RALTQFKSNT-----------DYG--VF----LPIQKAACAALRNGAAF 290 (399)
T ss_pred cEEEEeecccccCCccceeEEEec-CHHHH-HHHHHHHhhc-----------ccC--CC----HHHHHHHHHHHhCcHHH
Confidence 2433 678877644 44777764 33222 2221100000 000 11 12233333333 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeeccc--cCCeE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~~--~g~~~ 735 (891)
+++..+...+..+++.+.|++. ++++..+.....+.+++++. ....++.+.|.+ .|+.+..+... .+...
T Consensus 291 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~~------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~ 363 (399)
T PRK07681 291 CEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPKG------WTSLSFAYALMDRANVVVTPGHAFGPHGEGF 363 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCCC------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCe
Confidence 4444555567778888888876 67765554555666666431 134577778776 78875554432 22345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei 758 (891)
+ +++. .+.++++++++.|++.
T Consensus 364 iRis~~--~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 364 VRIALV--QDEEVLQQAVENIRNS 385 (399)
T ss_pred EEEEec--CCHHHHHHHHHHHHHh
Confidence 6 8876 3689999999888874
No 455
>PRK07503 methionine gamma-lyase; Provisional
Probab=97.11 E-value=0.04 Score=63.74 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=96.5
Q ss_pred EEEecccchHHH----HHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEE---EecCCccc--------h
Q psy852 508 MAYCSKEAHSCV----EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFV---STTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv----~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c 572 (891)
.|+++...|... ...+...|++++.++.+ |+++|+++|++.++ .+++ ++..|... |
T Consensus 106 ~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~tk----lV~le~p~NPtG~~~di~~I~~la 176 (403)
T PRK07503 106 EVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDKTR----MVYFETPANPNMRLVDIAAVAEIA 176 (403)
T ss_pred EEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCccCc----EEEEeCCCCCCCeeeCHHHHHHHH
Confidence 355565555432 23344568888888774 78999998875321 2222 23344443 3
Q ss_pred hhh-----hcCC-----------CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQGI-----------EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldGi-----------~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|.. -.+|-+..|.+||+++|-+ .|+++ .+++.... +... .... ..
T Consensus 177 ~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~-l~~~--~~~~---------~~ 243 (403)
T PRK07503 177 HGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVV-GGKALADR-IRLE--GLKD---------MT 243 (403)
T ss_pred HHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEE-cCHHHHHH-HHhh--hHHh---------Cc
Confidence 331 2221 2579999999999998765 66665 54433222 1100 0000 00
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-----------------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-----------------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-----------------~~~iV~Fr 697 (891)
+-+...+..|..++ |.+-+..++++..++++.+.+.|+++|.++.+.-| .-++++|.
T Consensus 244 ----g~~~s~~~a~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~ 317 (403)
T PRK07503 244 ----GAVMSPFDAFLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFE 317 (403)
T ss_pred ----CCCCCHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEE
Confidence 11223445565554 56777788888999999999999998887643211 13589999
Q ss_pred ecC
Q psy852 698 LRS 700 (891)
Q Consensus 698 ~~~ 700 (891)
+++
T Consensus 318 ~~~ 320 (403)
T PRK07503 318 LKG 320 (403)
T ss_pred ECC
Confidence 864
No 456
>PLN02509 cystathionine beta-lyase
Probab=97.11 E-value=0.023 Score=66.86 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=104.3
Q ss_pred EEEecccchHHHHHHH----HHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE---ecCCccc--------h
Q psy852 508 MAYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS---TTLGTTS--------C 572 (891)
Q Consensus 508 vI~~S~~aH~Sv~Kaa----~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c 572 (891)
.|+++...|.+..+.+ ...|++++.++. .|+++|+++|++.+ ..+++. +..|... |
T Consensus 173 ~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~T----klV~lesPsNPtG~i~Dl~~I~~lA 243 (464)
T PLN02509 173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQT----KLVWLESPTNPRQQISDIRKIAEMA 243 (464)
T ss_pred EEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcCC----eEEEEECCCCCCCCHHHHHHHHHHH
Confidence 4677777887766443 345777777764 36788888876432 122221 2233332 3
Q ss_pred hhh-----hcC-----------CCCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCC
Q psy852 573 YRK-----SQG-----------IEYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHW 634 (891)
Q Consensus 573 ~~~-----ldG-----------i~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ 634 (891)
+++ +|. -.++|.+.+++|||+++|-+ .|+++++++..... +. .++..
T Consensus 244 k~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~-~~----~~~~~---------- 308 (464)
T PLN02509 244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE-VY----FLQNS---------- 308 (464)
T ss_pred HHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHH-HH----HHHHh----------
Confidence 221 111 13589999999999999877 77777766532211 10 00000
Q ss_pred cccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeC-C-----C-----------ceeEEEEE
Q psy852 635 GIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISN-D-----V-----------RLGLVCFR 697 (891)
Q Consensus 635 ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~-~-----~-----------~~~iV~Fr 697 (891)
.+..+.....|..++ |.+-+..++++..++|+++.+.|+++|.++-+. | | -.++++|.
T Consensus 309 ---~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~ 383 (464)
T PLN02509 309 ---EGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFI 383 (464)
T ss_pred ---cCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEE
Confidence 011123344565554 666778899999999999999999999885332 1 1 13699998
Q ss_pred ecCCcchhhhhhHHHHHHHHH
Q psy852 698 LRSENNLIADQNNRKLLEDIN 718 (891)
Q Consensus 698 ~~~~~~~~~d~ln~~L~~~L~ 718 (891)
+ +. .....++++.|.
T Consensus 384 ~-~~-----~~~~~~f~~~l~ 398 (464)
T PLN02509 384 T-GS-----VALSKHLVETTK 398 (464)
T ss_pred e-CC-----HHHHHHHHHcCC
Confidence 8 32 223345555554
No 457
>PRK07049 methionine gamma-lyase; Validated
Probab=97.10 E-value=0.031 Score=65.21 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=56.8
Q ss_pred EEecCCCChHHHHHH----HHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHH
Q psy852 145 AYCSKEAHSCVEKAA----MMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPV 220 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa----~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i 220 (891)
|+++.-........+ ...|.+++.++ + + .|+++|++.+.+..+.. .+-+|.+..-+|.+|.+-|+++|.++
T Consensus 125 Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~-~--~-~d~~~l~~~l~~~~~~~-~tklv~lesP~NPtg~v~d~~~l~~l 199 (427)
T PRK07049 125 ILHSQPLYGGTETLLAKTFRNFGVGAVGFA-D--G-LSEAAIGAAAEAAAAKG-RVSLILIETPANPTNSLVDVAAVRRV 199 (427)
T ss_pred EEEcCCCcccHHHHHHHHHHhcCcEEEEEe-C--C-CCHHHHHHHHHhhccCC-CceEEEEECCCCCCCcccCHHHHHHH
Confidence 556555544443332 23466665554 2 2 57888888886543222 24577777899999999999999999
Q ss_pred HHH------cCCceeeeccc
Q psy852 221 AKE------FDVWLHVDGAY 234 (891)
Q Consensus 221 ~~~------~~~~lHvDaA~ 234 (891)
+++ +++++.+|-+|
T Consensus 200 a~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 200 ADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred HHHhhhcccCCCEEEEECCc
Confidence 988 66777777776
No 458
>PRK06290 aspartate aminotransferase; Provisional
Probab=97.10 E-value=0.012 Score=68.10 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=66.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-++......+...|.+++.|+.|++ +.+|+++|++.+.+. +-+|+++--+|.||.+-+ +++|++
T Consensus 133 Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~ 206 (410)
T PRK06290 133 TLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVD 206 (410)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHH
Confidence 555555555555666667789999999864 567999999887543 346666667999999988 467778
Q ss_pred HHHHcCCceeeeccccCC
Q psy852 220 VAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG~ 237 (891)
+|++++++|.+|-+|+.+
T Consensus 207 la~~~~~~iI~DEaY~~~ 224 (410)
T PRK06290 207 FAKENNIIVVQDAAYAAL 224 (410)
T ss_pred HHHHcCeEEEEecchhhc
Confidence 899999999999999643
No 459
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=97.09 E-value=0.013 Score=66.51 Aligned_cols=88 Identities=15% Similarity=-0.028 Sum_probs=68.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|++..-+......++...+.+++.++.++++.+|+++|++++.+.. +-+|+++--+|.||.+-+.+++.++++.+
T Consensus 115 v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~l~~~~ 189 (368)
T PRK03317 115 ALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEAILDAA 189 (368)
T ss_pred EEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHC
Confidence 5554455555555666677788888877778999999999887432 22445566789999999999999999999
Q ss_pred CCceeeeccccCC
Q psy852 225 DVWLHVDGAYAGS 237 (891)
Q Consensus 225 ~~~lHvDaA~GG~ 237 (891)
++++.+|-+|+++
T Consensus 190 ~~~lI~DE~y~~~ 202 (368)
T PRK03317 190 PGIVVVDEAYAEF 202 (368)
T ss_pred CceEEEeCCchhh
Confidence 9999999999764
No 460
>PRK06836 aspartate aminotransferase; Provisional
Probab=97.09 E-value=0.036 Score=63.66 Aligned_cols=247 Identities=10% Similarity=0.031 Sum_probs=130.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC-CCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK-NSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~-G~m 541 (891)
+|+ ++.|+++++..++.+. .. +.-.|+++.-.+.....++...|++++.+|++++ +.+
T Consensus 98 ~i~--~t~G~~~al~~~~~~l----~~---------------~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 156 (394)
T PRK06836 98 HIV--MTCGAAGALNVALKAI----LN---------------PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQP 156 (394)
T ss_pred cEE--EeCChHHHHHHHHHHh----cC---------------CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcC
Confidence 455 6778888877666543 10 1124667777777777777778899999999876 789
Q ss_pred CHHHHHHHHHhhhhcCCccEEE---EecCCccc-----------hhh------h-----hc---------C--CC----C
Q psy852 542 RGATLRQVMQQDETMGYIPFFV---STTLGTTS-----------CYR------K-----SQ---------G--IE----Y 581 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~V---vataGTT~-----------c~~------~-----ld---------G--i~----~ 581 (891)
|+++|++++++.++ -+++ ++..|++. |.+ | .| + .. .
T Consensus 157 d~~~l~~~~~~~~~----~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 232 (394)
T PRK06836 157 DLDALEAAITPKTK----AVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY 232 (394)
T ss_pred CHHHHHhhcCcCce----EEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHc
Confidence 99999999965322 1222 23356653 433 1 01 1 00 0
Q ss_pred --ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhh
Q psy852 582 --ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSG 658 (891)
Q Consensus 582 --aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G 658 (891)
-.-+..+..|.++.| ..+|+++..+.......+...-.+... ...+ .. ...+.++...+.+.. +
T Consensus 233 ~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~----~~~~~q~~~~~~l~~-~ 299 (394)
T PRK06836 233 YDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANR-------ILGF-VN----APALMQRVVAKCLDA-T 299 (394)
T ss_pred cCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhh-------cccc-cc----CCHHHHHHHHHHhCC-h
Confidence 012334577766644 456776654321000000000000000 0000 00 011222222222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
. ..+...+..+.+.+.|++. ++++..+.....++.+++.. ...++.+.|.+.|+.+..+........+ +
T Consensus 300 ~--~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi 369 (394)
T PRK06836 300 V--DVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSPEE-------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRL 369 (394)
T ss_pred H--HHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCCCC-------CHHHHHHHHHhCCEEEECchhcCCCCeEEE
Confidence 1 1233445567777788776 56665443333444454321 2356778888889876554433333456 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~ 759 (891)
+++ .++++++..++.|++++
T Consensus 370 ~~~--~~~~~~~~~i~~l~~~l 389 (394)
T PRK06836 370 SYC--VDTETIERSLPAFEKLA 389 (394)
T ss_pred Eec--CCHHHHHHHHHHHHHHH
Confidence 876 47889999888888776
No 461
>PRK09265 aminotransferase AlaT; Validated
Probab=97.08 E-value=0.064 Score=61.73 Aligned_cols=255 Identities=13% Similarity=0.028 Sum_probs=135.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-+|.....++...|.+++.+++|. ++.
T Consensus 97 ~i~--~t~G~~~~l~~~~~~~----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~ 155 (404)
T PRK09265 97 DIY--IGNGVSELIVMAMQAL----LN---------------NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWF 155 (404)
T ss_pred cEE--EeCChHHHHHHHHHHh----CC---------------CCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCC
Confidence 455 6788888876665442 10 122477788888888888887888888888764 467
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi---------~~aD 583 (891)
+|+++|++++++..+ .++++ +-.|++. |.++ .++. +...
T Consensus 156 ~d~~~l~~~~~~~~~----~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 231 (404)
T PRK09265 156 PDLDDIRSKITPRTK----AIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLL 231 (404)
T ss_pred CCHHHHHHhccccce----EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCce
Confidence 999999998864321 12222 2345543 2221 1110 1112
Q ss_pred EEEEc-CcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhHH
Q psy852 584 SFNVN-VNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQ 660 (891)
Q Consensus 584 SIs~d-~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~ 660 (891)
.|.+. ..|.++.| .=+|+++......+.+.+......+.. ..++ ...+.++++...++. +.+.
T Consensus 232 vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~~~q~~~~~~l~~~~~~~ 297 (404)
T PRK09265 232 CVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLAS--------MRLC------ANVPAQHAIQTALGGYQSIN 297 (404)
T ss_pred EEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhc--------cccC------CCcHHHHHHHHHhcCchhHH
Confidence 34433 47877655 336777653221111100000000000 0000 112333444444431 1222
Q ss_pred HHH---HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccc--cCCeE
Q psy852 661 KYI---RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ--EQNDE 735 (891)
Q Consensus 661 ~~i---~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~--~g~~~ 735 (891)
+.+ ++..+.++.+.+.|++.+++++..+.....++.++++... ......+.+...|.+.|+.+.-+... .+...
T Consensus 298 ~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~ 376 (404)
T PRK09265 298 ELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY-PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDH 376 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEeccccc-CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCe
Confidence 222 3556667888888888777776544344455556653200 00112345667778889875544433 23345
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ +++. .+.++++..++.|++.+
T Consensus 377 ~Ri~~~--~~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 377 FRIVTL--PRVDDLEEAIGRIGRFL 399 (404)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHH
Confidence 6 7774 67899999998888765
No 462
>PRK07908 hypothetical protein; Provisional
Probab=97.08 E-value=0.09 Score=59.21 Aligned_cols=68 Identities=19% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHcCCceeeeccc
Q psy852 156 EKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAY 234 (891)
Q Consensus 156 ~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~~~~lHvDaA~ 234 (891)
...+...|.+++.+++|+++.+|+++++ +. +-+++++..+|.||.+-|.++|.++|++ +.++.+|.+|
T Consensus 110 ~~~~~~~G~~i~~v~~~~~~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y 177 (349)
T PRK07908 110 EAALRAAGIPVHRVVLDPPFRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAF 177 (349)
T ss_pred HHHHHHcCCEEEeeccCcccCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcc
Confidence 3444567889999999988889998653 21 2366668889999999999999999965 7788889998
No 463
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=97.08 E-value=0.0039 Score=70.93 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=69.2
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++..-++......+...|.+++.|+.++++.+|+++|++.+++.. -+|+++..+|.||.+-|.+++.++++.
T Consensus 115 vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l~~~~ 188 (371)
T PRK05166 115 VVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLDAT 188 (371)
T ss_pred EEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 6666667766767777778899999999889999999999886543 366678889999999998888877764
Q ss_pred -cCCceeeeccccC
Q psy852 224 -FDVWLHVDGAYAG 236 (891)
Q Consensus 224 -~~~~lHvDaA~GG 236 (891)
.++++.+|.+|+-
T Consensus 189 ~~~~~ii~De~y~~ 202 (371)
T PRK05166 189 PPETLIVVDEAYAE 202 (371)
T ss_pred CCCcEEEEECcHHH
Confidence 3788999999943
No 464
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=97.07 E-value=0.19 Score=58.93 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=85.1
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
.|-++++ |.++.-++.|+++.+++. ...+ .... ..|.. +-+........+|+.+.. +
T Consensus 283 pDivt~~--K~l~~G~p~gav~~~~~i--~~~~---~~~~-----------~~T~~-g~p~~~aaa~a~L~~l~~----~ 339 (441)
T PRK05769 283 PDIITLA--KAIAGGLPLGAVIGRAEL--MFLP---PGSH-----------ANTFG-GNPVAAAAALATLEELEE----G 339 (441)
T ss_pred CCEEEEc--ccccCCcccEEEEEehhh--hhcC---CCCC-----------CCCCC-cCHHHHHHHHHHHHHHHH----H
Confidence 4777764 777766778888887652 1111 0000 11111 122222333344444433 4
Q ss_pred HHHHHHHHHHHHHHHhccCC-CcEEeCCCc--eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRDP-RFEISNDVR--LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~-~~eil~~~~--~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
.+++..++.++|.+.|+++. .+.++.+.. -.++.+.+.....+........+.+.+.+.|++.. + .+...+ +
T Consensus 340 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~-~---~~~~~lr~ 415 (441)
T PRK05769 340 LLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLL-G---AGKSAIRI 415 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEe-c---CCCCEEEE
Confidence 56677778888888886531 122222221 23455555322111112345678888889998742 2 234566 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
++...+|++|||++++.+++.+.
T Consensus 416 ~p~l~~t~~~id~~~~~l~~~l~ 438 (441)
T PRK05769 416 IPPLIITEEEADIGLEILEEAIK 438 (441)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Confidence 88888899999999999998763
No 465
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=97.06 E-value=0.045 Score=62.42 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=94.7
Q ss_pred EEecccchHH----HHHHHHHcCceEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEEe---cCCccc--------hh
Q psy852 509 AYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVST---TLGTTS--------CY 573 (891)
Q Consensus 509 I~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~--------c~ 573 (891)
|+++...+.+ ....+...|++++.++. .|+++|+++|++.++ .+++.. -.|+.. |+
T Consensus 93 Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~~tk----lv~le~P~NP~~~~~dl~~I~~la~ 163 (366)
T PRK08247 93 LIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITPNTK----AIFIETPTNPLMQETDIAAIAKIAK 163 (366)
T ss_pred EEEecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhcccCce----EEEEECCCCCCCcHHHHHHHHHHHH
Confidence 4455444433 23334456778887775 388888888865321 222221 122221 22
Q ss_pred hh-----hcC----------C-CCccEEEEcCcccCCcccc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCc
Q psy852 574 RK-----SQG----------I-EYADSFNVNVNKWLLTAFD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWG 635 (891)
Q Consensus 574 ~~-----ldG----------i-~~aDSIs~d~HK~L~~P~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~t 635 (891)
++ +|. + .++|-+..+++|+++++-+ .|+++.+++.........+ .+.
T Consensus 164 ~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-~~~-------------- 228 (366)
T PRK08247 164 KHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-NAA-------------- 228 (366)
T ss_pred HcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHH-Hhc--------------
Confidence 21 111 1 3589999999999998755 5665554443222111000 000
Q ss_pred ccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEec
Q psy852 636 IPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLR 699 (891)
Q Consensus 636 i~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~ 699 (891)
+-....+..|..++ |.+.+..++++..++++.+.+.|+++|++..+..| ..++++|.+.
T Consensus 229 ---g~~~s~~~a~l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 229 ---GAVLSPFDSWLLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred ---CCCCChHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 00112234566655 55677788888899999999999999998754444 7889999885
No 466
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=97.05 E-value=0.004 Score=70.37 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=68.8
Q ss_pred EEEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH
Q psy852 144 MAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE 223 (891)
Q Consensus 144 ~v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~ 223 (891)
.|+++.-++......+...|.+++.|+.++++.+|+++|++.+. . +-+|+++-.+|.||.+-+.+++.++++.
T Consensus 101 ~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~ 173 (351)
T PRK01688 101 AILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRTLLEL 173 (351)
T ss_pred EEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 36667777777777777788899999998889999999998773 2 2367777899999999998888887764
Q ss_pred c--CCceeeecccc
Q psy852 224 F--DVWLHVDGAYA 235 (891)
Q Consensus 224 ~--~~~lHvDaA~G 235 (891)
. +.+|++|-||.
T Consensus 174 ~~~~~~vivDEay~ 187 (351)
T PRK01688 174 TRGKAIVVADEAYI 187 (351)
T ss_pred CCCCcEEEEECchh
Confidence 3 57899999993
No 467
>PRK06234 methionine gamma-lyase; Provisional
Probab=97.04 E-value=0.03 Score=64.66 Aligned_cols=200 Identities=13% Similarity=0.175 Sum_probs=113.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHH----HHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCV----EKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv----~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|+.++..++.+. .+ +.-.|+++...|.+. ...+...|++++.++.+ |+
T Consensus 84 ~~~sG~~Ai~~al~~l----l~---------------~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~ 139 (400)
T PRK06234 84 VAASGMGAISSSLWSA----LK---------------AGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NL 139 (400)
T ss_pred EEcCHHHHHHHHHHHH----hC---------------CCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-----CH
Confidence 4667788876665432 11 112356666655443 33445678888888763 78
Q ss_pred HHHHHHHHhhhhcCCccEEEE---ecCCccc--------hhhh-------hcC----------C-CCccEEEEcCcccCC
Q psy852 544 ATLRQVMQQDETMGYIPFFVS---TTLGTTS--------CYRK-------SQG----------I-EYADSFNVNVNKWLL 594 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vv---ataGTT~--------c~~~-------ldG----------i-~~aDSIs~d~HK~L~ 594 (891)
++|+++|++.++ .+++. +..|... |+++ +|. + ..+|-+..+++|+++
T Consensus 140 e~l~~~i~~~tk----lI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~ 215 (400)
T PRK06234 140 EEVRNALKANTK----VVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLN 215 (400)
T ss_pred HHHHHHhccCCe----EEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeecccccc
Confidence 888888865321 22221 2234432 3321 111 0 258999999999999
Q ss_pred cccc--cEEEEEeCCccchhhhccC-CCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy852 595 TAFD--SSCLWVADRYKLTSALVVD-PLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 671 (891)
Q Consensus 595 ~P~g--~G~llvR~~~~L~~~l~~~-~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~ 671 (891)
+|-. .|+++.+++ .. +.+... ..+. + +-...++..|..++ |.+.+..++++..++++
T Consensus 216 g~g~~~gG~v~~~~~-~~-~~l~~~~~~~~------------~----g~~l~p~~a~l~~~--~l~tl~~r~~~~~~na~ 275 (400)
T PRK06234 216 GHGDVIAGFVVGKEE-FI-NQVKLFGIKDM------------T----GSVIGPFEAFLIIR--GMKTLQIRMEKHCKNAM 275 (400)
T ss_pred CCCCceeEEEEecHH-HH-HHHHHHHHHHh------------c----CCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHH
Confidence 8764 477666543 22 222100 0000 0 11223344455544 56667788899999999
Q ss_pred HHHHHhccCCCcEEeCC------C-----------ceeEEEEEecCCcchhhhhhHHHHHHHHHhC
Q psy852 672 LFEGKVRRDPRFEISND------V-----------RLGLVCFRLRSENNLIADQNNRKLLEDINAS 720 (891)
Q Consensus 672 ~L~~~L~~~~~~eil~~------~-----------~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~ 720 (891)
++.+.|++.|.+.-+.- | ..++++|.+++. .....++.+.|..-
T Consensus 276 ~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-----~~~~~~f~~~l~~~ 336 (400)
T PRK06234 276 KVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-----VEEGKVVMNNVKLA 336 (400)
T ss_pred HHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHhCCcc
Confidence 99999999887753321 1 136999999743 12335666666543
No 468
>PRK05942 aspartate aminotransferase; Provisional
Probab=97.02 E-value=0.13 Score=59.16 Aligned_cols=236 Identities=10% Similarity=0.004 Sum_probs=123.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~mD~~~ 545 (891)
+|.|+++++..++.+. .. +.-.|+++.-.+.....++...|++++.+|.|.+ +.+|+++
T Consensus 102 vt~G~~~al~~~~~~~----~~---------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 162 (394)
T PRK05942 102 PLLGSKEGLTHLALAY----VN---------------PGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSS 162 (394)
T ss_pred EccChHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHH
Confidence 5678888887765442 11 1224777777777777777778899999998743 4799999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC--------CC---CccEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG--------IE---YADSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG--------i~---~aDSIs 586 (891)
|++.+.+.+ ..++++ +-.|++. |.++ . ++ +. ...-..
T Consensus 163 l~~~~~~~~----k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (394)
T PRK05942 163 IPEEVAQQA----KILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEF 238 (394)
T ss_pred HHHhccccc----eEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEE
Confidence 999886422 233333 3456654 3221 0 11 11 111113
Q ss_pred EcCcccCC-cccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHHHHH
Q psy852 587 VNVNKWLL-TAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQKYI 663 (891)
Q Consensus 587 ~d~HK~L~-~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~~~i 663 (891)
-+..|.++ ...-+|+++... +.+ +.+.....+. .++. ..+.+.++...+. .+.+++..
T Consensus 239 ~SfSK~~~~~GlRiG~i~~~~-~l~-~~l~~~~~~~-----------~~~~------~~~~q~~~~~~l~~~~~~~~~~~ 299 (394)
T PRK05942 239 HTLSKTYNMAGWRVGFVVGNR-HII-QGLRTLKTNL-----------DYGI------FSALQKAAETALQLPDSYLQQVQ 299 (394)
T ss_pred ecchhccCChhhheeeeecCH-HHH-HHHHHHHhhc-----------ccCC------CHHHHHHHHHHHhCcHHHHHHHH
Confidence 45668664 335578887533 222 2221100000 0000 0112222222232 33445555
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHH-HHhCCcEEEeeccc--cCCeEE-EE
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLED-INASGRLHMVPASQ--EQNDEV-FE 738 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~-L~~~G~~~~s~s~~--~g~~~l-~s 738 (891)
++..+..+++.+.|+.. ++.+.. ++.+ .+++++++. ....++..+ |.+.|+.+..+... .+...+ ++
T Consensus 300 ~~~~~~~~~~~~~L~~~-~~~~~~-~~~~~f~~~~~~~~------~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis 371 (394)
T PRK05942 300 ERYRTRRDFLIQGLGEL-GWNIPP-TKATMYLWVPCPVG------MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRIS 371 (394)
T ss_pred HHHHHHHHHHHHHHHHC-CCeecC-CCeeeEEEEECCCC------CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEE
Confidence 55667778888888775 566554 4455 566666432 123345554 45688875544432 234466 88
Q ss_pred ecCCCCHHHHHHHHHHHHHH
Q psy852 739 LQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 739 v~~~tT~edId~li~~L~ei 758 (891)
+.. . .+.+.+.|+++
T Consensus 372 ~~~--~---~~~l~~~l~~l 386 (394)
T PRK05942 372 LIA--D---CDRLGEALDRL 386 (394)
T ss_pred ecC--C---HHHHHHHHHHH
Confidence 752 3 34455555544
No 469
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=97.01 E-value=0.028 Score=63.58 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=60.0
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccC---HHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN---LAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp---l~~I~~ 219 (891)
|++..-.......++...+.+++.++.+++ ..+| +++.+.+... +-+|+++.-+|.||.+-+ +.+|++
T Consensus 96 v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~ 168 (354)
T PRK06358 96 VLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILD 168 (354)
T ss_pred EEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 444444444455555667889999998754 3688 5655555322 345666777999999976 778888
Q ss_pred HHHHcCCceeeecccc
Q psy852 220 VAKEFDVWLHVDGAYA 235 (891)
Q Consensus 220 i~~~~~~~lHvDaA~G 235 (891)
+|+++++++.+|.+|.
T Consensus 169 ~a~~~~~~ii~De~Y~ 184 (354)
T PRK06358 169 KCEKRNIYLIIDEAFM 184 (354)
T ss_pred HHHhcCCEEEEeCccc
Confidence 8999999999999994
No 470
>PRK12414 putative aminotransferase; Provisional
Probab=97.01 E-value=0.071 Score=60.99 Aligned_cols=243 Identities=9% Similarity=0.035 Sum_probs=129.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC-CCCc
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD-KNSL 541 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~-~G~m 541 (891)
+++ +++|+++++..++.+. .. +.-.|+++.-.|......+...|.+++.+|.++ ++.+
T Consensus 92 ~i~--it~g~~~al~~~~~~l----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (384)
T PRK12414 92 EVT--VIASASEGLYAAISAL----VH---------------PGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRV 150 (384)
T ss_pred cEE--EECChHHHHHHHHHHh----cC---------------CCCEEEEeCCCccchHHHHHHcCCEEEEEecCcccccc
Confidence 455 6788888877665442 10 112366677778777777788889999999874 5789
Q ss_pred CHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC--------CC-c--
Q psy852 542 RGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI--------EY-A-- 582 (891)
Q Consensus 542 D~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi--------~~-a-- 582 (891)
|++.|++++++.. ..++++ +-.|++. |.++ .++- .. .
T Consensus 151 d~~~l~~~l~~~~----~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~ 226 (384)
T PRK12414 151 NWDEVAAAITPRT----RMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAER 226 (384)
T ss_pred CHHHHHhhcCccc----EEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCc
Confidence 9999999886421 122332 3456643 2221 1110 00 0
Q ss_pred cEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhHH
Q psy852 583 DSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQ 660 (891)
Q Consensus 583 DSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~ 660 (891)
--..-+..|.++.| .-+|+++...+ +.+.+..-..+ .......+.+++....+.. ..+.
T Consensus 227 ~i~~~SfSK~~~~pGlRiG~~v~~~~--l~~~l~~~~~~-----------------~~~~~s~~~q~a~~~~l~~~~~~~ 287 (384)
T PRK12414 227 SVIVSSFGKSYHVTGWRVGYCLAPAE--LMDEIRKVHQF-----------------MVFSADTPMQHAFAEALAEPASYL 287 (384)
T ss_pred EEEEecccccccCccceEEEEecCHH--HHHHHHHHHhh-----------------eecCCCcHHHHHHHHHhcCChHHH
Confidence 12333466766544 33566655332 11111100000 0011122344444444422 2233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEE-EEEecCCcchhhhhhHHHHH-HHHHhCCcEEEeeccc--cC--Ce
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLV-CFRLRSENNLIADQNNRKLL-EDINASGRLHMVPASQ--EQ--ND 734 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV-~Fr~~~~~~~~~d~ln~~L~-~~L~~~G~~~~s~s~~--~g--~~ 734 (891)
+..+...+.++++.+.|++. ++++. ++..+.. +.++.+.. +....++. ..|.+.|+.+.-+... .+ ..
T Consensus 288 ~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~----~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~ 361 (384)
T PRK12414 288 GLGAFYQRKRDLLARELAGS-RFELL-PSEGSFFMLARFRHFS----DESDSDFVLRLIRDARVATIPLSAFYTDGTDTG 361 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeec-CCCcceEEEEcccccC----CCCHHHHHHHHHHhCCEEEecchhhcCCCCCCC
Confidence 44455567778888888876 56654 3444443 33664310 11233444 5566789876655433 12 34
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~e 757 (891)
.+ +++.. +++++++.++.|.+
T Consensus 362 ~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 362 LIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred EEEEEecC--CHHHHHHHHHHHhh
Confidence 56 88774 57888888876653
No 471
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=97.00 E-value=0.27 Score=58.07 Aligned_cols=154 Identities=8% Similarity=0.019 Sum_probs=89.6
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
-|-+++ -|.++.= +++|+++.+++ +.+.+... .+. ...|+. +-+..+....++|+.+-.++
T Consensus 293 PDivt~--gK~lggG~~Pigav~~~~~--i~~~~~~~-~~~----------~~~T~~-gnp~~~Aaala~L~~i~~~~-- 354 (459)
T PRK11522 293 PDILCL--AKALGGGVMPIGATIATEE--VFSVLFDN-PFL----------HTTTFG-GNPLACAAALATINVLLEQN-- 354 (459)
T ss_pred CCEEEe--chhhhCCCccceeEEEcHH--HHHHhccC-Ccc----------cCCCCC-CCHHHHHHHHHHHHHHhcch--
Confidence 576654 7888754 46788988754 22222111 111 011111 12333334445566555544
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CcE-EeCCC--ceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE
Q psy852 661 KYIRRHCELAKLFEGKVRRDP-RFE-ISNDV--RLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~-~~e-il~~~--~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l 736 (891)
..++..++.++|.+.|+++. .+. ++.+. .-.++.+.+... .....+.+.|.+.|++.. ++ ..+..++
T Consensus 355 -l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~~Gvl~~-~~-~~~~~~l 425 (459)
T PRK11522 355 -LPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFRQRVLVA-GT-LNNAKTI 425 (459)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHHCCeEEE-ec-CCCCCEE
Confidence 45667778888888887641 222 22221 234566666432 345678888989997742 22 2234566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
+.+....|++|||.+++.|++.+..+
T Consensus 426 r~~Ppl~~t~~~id~~l~~l~~~l~~~ 452 (459)
T PRK11522 426 RIEPPLTLTIEQCEQVLKAARKALAAM 452 (459)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999887533
No 472
>PRK06348 aspartate aminotransferase; Provisional
Probab=96.99 E-value=0.071 Score=60.96 Aligned_cols=243 Identities=8% Similarity=0.039 Sum_probs=128.0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|+|+++++..++.+.-. +...|++..-.+.....++...|.+++.+|.+ +++.
T Consensus 91 ~i~--it~G~~~al~~~~~~~~~-------------------~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 149 (384)
T PRK06348 91 EIM--ATVGACHGMYLALQSILD-------------------PGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQ 149 (384)
T ss_pred hEE--EcCChHHHHHHHHHHhcC-------------------CCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCc
Confidence 455 688999988777665311 11246777777777788888888898999874 3457
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----hcCCCCcc------------------
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----SQGIEYAD------------------ 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----ldGi~~aD------------------ 583 (891)
+|+++|++++++.. ..++++ +-.|.+. |.++ .|.+ +.|
T Consensus 150 ~d~~~l~~~~~~~~----~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~ 224 (384)
T PRK06348 150 INVKKLEALITSKT----KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEV-YDGFSFYEDFVPMATLAGMPE 224 (384)
T ss_pred CCHHHHHHhhCcCc----cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecc-cccceeCCCccchhhcCCCcC
Confidence 99999999886432 123333 2244443 2221 0110 011
Q ss_pred -EEE-EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hh-
Q psy852 584 -SFN-VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SG- 658 (891)
Q Consensus 584 -SIs-~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G- 658 (891)
.|. -+..|.++.| .-+|+++..+. +...+.....+ ..++ ...+.+.++...+.. +.
T Consensus 225 ~vi~~~SfSK~~~l~GlRiG~~v~~~~--~~~~~~~~~~~-----------~~~~------~~~~~q~~~~~~l~~~~~~ 285 (384)
T PRK06348 225 RTITFGSFSKDFAMTGWRIGYVIAPDY--IIETAKIINEG-----------ICFS------APTISQRAAIYALKHRDTI 285 (384)
T ss_pred cEEEEecchhccCCccccceeeecCHH--HHHHHHHHHHh-----------ccCC------CCHHHHHHHHHHHhCcHHH
Confidence 122 2455555433 33454444221 11111100000 0000 112333333333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCe
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQND 734 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~ 734 (891)
+++..+...+.++++.+.|+..+++++. +++.+ .++++++.. .....++.+.|. +.|+.+.-++.. .+..
T Consensus 286 ~~~~~~~~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~~~~~~~~-----~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~ 359 (384)
T PRK06348 286 VPLIKEEFQKRLEYAYKRIESIPNLSLH-PPKGSIYAFINIKKT-----GLSSVEFCEKLLKEAHVLVIPGKAFGESGEG 359 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceec-cCCeeEEEEEecccC-----CCCHHHHHHHHHHhCCEEEcCchhhccCCCC
Confidence 3334444456678888888887776654 44444 345566421 113456777775 568875544432 2234
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei 758 (891)
.+ +++. .+.++++..++.|+++
T Consensus 360 ~iRi~~~--~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 360 YIRLACT--VGIEVLEEAFNRIEKM 382 (384)
T ss_pred eEEEEec--CCHHHHHHHHHHHHhh
Confidence 56 8875 4788888888877654
No 473
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=96.98 E-value=0.14 Score=58.30 Aligned_cols=238 Identities=7% Similarity=-0.028 Sum_probs=126.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~mD~~~ 545 (891)
+|.|+++++..++... . .+...|++..-.......++...|.+++.+|.+++ ..+|+++
T Consensus 96 ~t~G~~~~l~~~~~~~----~---------------~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~ 156 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAF----V---------------NPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDA 156 (383)
T ss_pred ECCCcHHHHHHHHHHh----C---------------CCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHH
Confidence 5678888777655431 1 11234666666677777777888999999998643 5689999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------CC---CccEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------IE---YADSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i~---~aDSIs 586 (891)
|++.+.+.. ..++++ +-.|++. |.++ .++ +. ...-..
T Consensus 157 l~~~~~~~~----~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~ 232 (383)
T TIGR03540 157 IPEDIAKKA----KLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEF 232 (383)
T ss_pred HHhhccccc----eEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEE
Confidence 999886422 233333 2345544 3221 011 00 111223
Q ss_pred EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHHHHH
Q psy852 587 VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQKYI 663 (891)
Q Consensus 587 ~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~~~i 663 (891)
-+..|.++.| .=+|+++. +++.+.........+ . .+. + .+.+......+ +..-+++..
T Consensus 233 ~SfSK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~-~-----------~~~--~----~~~q~~~~~~l~~~~~~~~~~~ 293 (383)
T TIGR03540 233 HSLSKTYNMTGWRIGMAVG-NADLIAGLGKVKTNV-D-----------SGV--F----QAIQYAAIAALNGPQDVVKEIR 293 (383)
T ss_pred EecccccCCccceeeEEeC-CHHHHHHHHHHHHhc-c-----------cCC--C----hHHHHHHHHHHhCCHHHHHHHH
Confidence 4566877644 22676654 332222111111000 0 000 0 11111222222 223344555
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeEE-EEe
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDEV-FEL 739 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~l-~sv 739 (891)
+...+.++.+.+.|++. ++.+..+.....+++++++. ....++.+.|. +.|+.+..++.. .+...+ +++
T Consensus 294 ~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~ 366 (383)
T TIGR03540 294 KIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVPEG------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL 366 (383)
T ss_pred HHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECCCC------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe
Confidence 56677888888999886 67766443333466666421 13467788765 578876544432 223456 887
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFV 756 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ 756 (891)
+ .+++++++.++.|.
T Consensus 367 ~--~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 367 T--VPDERLEEAVARIK 381 (383)
T ss_pred c--CCHHHHHHHHHHHh
Confidence 6 35667776666554
No 474
>PLN02624 ornithine-delta-aminotransferase
Probab=96.98 E-value=0.19 Score=59.51 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=79.2
Q ss_pred ccEEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ .|.+++. +++|+++.+++ .+ ..+. +. .+ ..|+. +-+......-++|+.+-..++
T Consensus 286 pDiv~l--sK~lggG~~pigav~~~~~-i~-~~~~--~~--~~---------~~T~~-g~pl~~aaa~aaLe~l~~~~l- 346 (474)
T PLN02624 286 PDVVIL--GKALGGGVIPVSAVLADKD-VM-LCIK--PG--EH---------GSTFG-GNPLASAVAMAALQVVQDEKL- 346 (474)
T ss_pred CCEEEe--cccccCCCCcceeeeecHH-HH-hHhc--cC--Cc---------CCCCC-CCHHHHHHHHHHHHHHHhchH-
Confidence 577777 4988877 57888887643 11 1111 00 00 01111 112222222233343333333
Q ss_pred HHHHHHHHHHHHHHHHhccC----CC-cEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeE
Q psy852 661 KYIRRHCELAKLFEGKVRRD----PR-FEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDE 735 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~----~~-~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~ 735 (891)
.++..++.++|.+.|+++ +. +.-+. ..-.++.+.+..... -+.....+.+.|.+.|++. .+. +..+
T Consensus 347 --~~~~~~~~~~l~~~L~~l~~~~~~~i~~vr-g~G~~~~i~l~~~~~--~~~~a~~~~~~L~e~GV~v-~p~---~~~~ 417 (474)
T PLN02624 347 --AERSAKLGQELRDQLQKIQKQFPKLIKEVR-GRGLLNAVVLNSPKL--GPVSAYDVCLKLKERGLLA-KPT---HDTI 417 (474)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCceEEEE-eeEEEEEEEecCCCc--ChHHHHHHHHHHHhCCeEE-ecC---CCCE
Confidence 334455566666666542 32 21111 222344444432110 0124567888898899774 332 3456
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
+ |+++..+|++|||++++.|++.+.
T Consensus 418 lR~~p~l~~t~e~id~~l~~L~~~l~ 443 (474)
T PLN02624 418 IRLAPPLSISEDELQECSKALSDVLE 443 (474)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHH
Confidence 7 988888999999999999987763
No 475
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=96.96 E-value=0.0058 Score=68.95 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=68.3
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++..-+......++...|.+++.++++ ++.+|+++|++.+.+. +.+|+++..+|.||.+-|.++|.++++.
T Consensus 108 v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~ 180 (359)
T PRK03158 108 TVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESV 180 (359)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 6666666666666666778899999998 6789999999877543 2355667789999999999999999987
Q ss_pred -cCCceeeeccccCC
Q psy852 224 -FDVWLHVDGAYAGS 237 (891)
Q Consensus 224 -~~~~lHvDaA~GG~ 237 (891)
+++++.+|-+|+.+
T Consensus 181 ~~~~~ii~De~y~~~ 195 (359)
T PRK03158 181 PSHVLVVLDEAYYEY 195 (359)
T ss_pred CCCcEEEEECchHhh
Confidence 58999999999543
No 476
>PRK08960 hypothetical protein; Provisional
Probab=96.96 E-value=0.072 Score=60.90 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=128.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +|.|+++++..++.+. .+ +.-.|+++.-+|.+....+...+.+++.+|++.+ +.
T Consensus 94 ~i~--it~G~~~al~~~~~~~----~~---------------~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 152 (387)
T PRK08960 94 RIL--VTPGGSGALLLASSLL----VD---------------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQ 152 (387)
T ss_pred hEE--EccCcHHHHHHHHHHh----cC---------------CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCC
Confidence 566 7889999887766442 11 1235788888898888888888889999998754 47
Q ss_pred cCHHHHHHHHHhhhhcCCccEEE---EecCCccc-----------hhhh-----hcCC--------------C-CccEE-
Q psy852 541 LRGATLRQVMQQDETMGYIPFFV---STTLGTTS-----------CYRK-----SQGI--------------E-YADSF- 585 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~V---vataGTT~-----------c~~~-----ldGi--------------~-~aDSI- 585 (891)
+|+++|++++++.+. -+++ .+-.|++. |.++ +|.+ . .-+.|
T Consensus 153 ~d~~~l~~~~~~~~~----~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~ 228 (387)
T PRK08960 153 LTPALVERHWNADTV----GALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFV 228 (387)
T ss_pred CCHHHHHHHhCccce----EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 999999998875321 1222 23456654 3221 1110 0 01222
Q ss_pred EEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---HhhHHH
Q psy852 586 NVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LSGLQK 661 (891)
Q Consensus 586 s~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~G~~~ 661 (891)
.-+.+|.++.| .-+|+++..++ .+.........+ +...+ .+.+.++...+. ..-+.+
T Consensus 229 ~~S~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~--------------~~~~s----~~~q~a~~~~l~~~~~~~l~~ 289 (387)
T PRK08960 229 LNSFSKYFGMTGWRLGWLVAPPA-AVPELEKLAQNL--------------YISAS----TPAQHAALACFEPETLAILEA 289 (387)
T ss_pred EeecccccCCcccEEEEEEcCHH-HHHHHHHHHhhh--------------ccCCC----HHHHHHHHHHhhcCcHHHHHH
Confidence 34577866534 23777766432 221110000000 01111 122222333331 122333
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEeCCC-ceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc---CCeEE
Q psy852 662 YIRRHCELAKLFEGKVRRDPRFEISNDV-RLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE---QNDEV 736 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~~~~eil~~~-~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~---g~~~l 736 (891)
..+...+..+.+.+.|++. ++.+...| ....+.+++++. .....++.+.|. +.|+.+..++... ....+
T Consensus 290 ~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~-----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~i 363 (387)
T PRK08960 290 RRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAF-----GGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHV 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEecccc-----CCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeE
Confidence 3444556677788888775 45543333 334445555421 113467777765 5788755443332 22356
Q ss_pred -EEecCCCCHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRM 758 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei 758 (891)
+++.. +.+.++..++.|.+.
T Consensus 364 Ri~~~~--~~~~l~~al~~l~~~ 384 (387)
T PRK08960 364 RFAYTQ--SLPRLQEAVERIARG 384 (387)
T ss_pred EEEecC--CHHHHHHHHHHHHHH
Confidence 88774 456666666555543
No 477
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=96.95 E-value=0.14 Score=61.26 Aligned_cols=253 Identities=11% Similarity=0.057 Sum_probs=138.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +++|+++++..++.+. .+ +.-.|+++.-.++....++.+.|++++.+++++ ++.
T Consensus 210 ~I~--it~G~~eal~~~~~~l----~~---------------~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~ 268 (517)
T PRK13355 210 DIY--TGNGVSELINLSMSAL----LD---------------DGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWY 268 (517)
T ss_pred HEE--EeCcHHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCC
Confidence 566 7789999887776542 11 112466666777777777888899999998865 468
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi---------~~aD 583 (891)
+|+++|++++.+.+ ..++++ +-.|++. |.+| .++. ...-
T Consensus 269 ~d~~~l~~~~~~~~----k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~ 344 (517)
T PRK13355 269 PDIDDIRSKITSRT----KAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLF 344 (517)
T ss_pred CCHHHHHHhcCcCc----eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCe
Confidence 99999999886532 223333 2356554 3221 1221 1111
Q ss_pred EEEE-cCcccCCcc-cccEEEEEe-CCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHH-hhH
Q psy852 584 SFNV-NVNKWLLTA-FDSSCLWVA-DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGL 659 (891)
Q Consensus 584 SIs~-d~HK~L~~P-~g~G~llvR-~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~ 659 (891)
.|++ ++.|.++.| .=+|++++. +.+.+...... ...+. .... ....+.++++...+.. ..+
T Consensus 345 vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~-l~~~~----------~~~~----~~~~~~q~a~~~aL~~~~~~ 409 (517)
T PRK13355 345 CVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEG-LNMLA----------NMRL----CSNVPAQSIVQTALGGHQSV 409 (517)
T ss_pred EEEEecchhhccCcccceEEEEeeCchhhHHHHHHH-HHHHh----------cCcC----CcChHHHHHHHHHhcCCccH
Confidence 2333 467876555 337777653 22211110000 00000 0000 1223445555555532 112
Q ss_pred HHH---HHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEE-EecCCcchhhhhhHHHHHHHHHhCCcEEEeecccc--CC
Q psy852 660 QKY---IRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCF-RLRSENNLIADQNNRKLLEDINASGRLHMVPASQE--QN 733 (891)
Q Consensus 660 ~~~---i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~F-r~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~--g~ 733 (891)
.+. .++..+.++++.+.|++++++++. +|+.+...| ++.+... ......+.+...|.+.|+.++-++... +.
T Consensus 410 ~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~~~l~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~ 487 (517)
T PRK13355 410 KDYLVPGGRVYEQRELVYNALNAIPGISAV-KPKAAFYIFPKIDVKKF-NIHDDEQFALDLLHDKKVLIVQGTGFNWDKP 487 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccC-CCCeeeEEEeecCcccC-CCCCHHHHHHHHHHhCCEEEeCcchhCCCCc
Confidence 222 234566678899999988888765 455565555 5542100 000112334455677898866555442 34
Q ss_pred eEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 734 DEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 734 ~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..+ +++. .++++++..++.|.+.+
T Consensus 488 ~~~Ris~~--~~~~~l~~a~~rl~~~~ 512 (517)
T PRK13355 488 DHFRVVYL--PRLEDLEDAMDRLADFF 512 (517)
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 456 8773 67888888888887765
No 478
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=96.92 E-value=0.094 Score=59.14 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHcCCeEEEEec---CCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccc---cCHHHHHHHHHH
Q psy852 150 EAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF---DNLAEIGPVAKE 223 (891)
Q Consensus 150 ~~H~Sv~kaa~~~~~~v~~V~~---d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~Gav---Dpl~~I~~i~~~ 223 (891)
-.-+.+.++....+-+++..|. |....||.++||+.+.+.. +.+.+..--.|.+|.+ +.|.+|+++|++
T Consensus 115 PvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP~Grvwt~eeL~~i~elc~k 189 (388)
T COG1168 115 PVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTKEELRKIAELCLR 189 (388)
T ss_pred CCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCCCCccccHHHHHHHHHHHHH
Confidence 3455677777666778888775 4455679999999998763 2366667788999988 889999999999
Q ss_pred cCCce-----eeeccccC
Q psy852 224 FDVWL-----HVDGAYAG 236 (891)
Q Consensus 224 ~~~~l-----HvDaA~GG 236 (891)
||+.| |.|-.++|
T Consensus 190 h~v~VISDEIHaDlv~~g 207 (388)
T COG1168 190 HGVRVISDEIHADLVLGG 207 (388)
T ss_pred cCCEEEeecccccccccC
Confidence 99874 66666654
No 479
>PTZ00377 alanine aminotransferase; Provisional
Probab=96.91 E-value=0.47 Score=56.17 Aligned_cols=256 Identities=10% Similarity=-0.017 Sum_probs=137.3
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCC--CC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~--G~ 540 (891)
+|+ +|+|+++++..++.+.-. + +.-.|++..-.++.....+.+.|.+++.+|++++ +.
T Consensus 140 ~I~--it~Ga~~al~~~~~~l~~---~---------------~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~ 199 (481)
T PTZ00377 140 DIF--LTDGASSGIKLLLQLLIG---D---------------PSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWS 199 (481)
T ss_pred hEE--EcCCHHHHHHHHHHHhcc---C---------------CCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCC
Confidence 566 789999998887765310 0 1224777777888888888889999999998743 58
Q ss_pred cCHHHHHHHHHhhhhcC-Cc-cEEEE---ecCCccc-----------hhhh--------------hc-CCC---------
Q psy852 541 LRGATLRQVMQQDETMG-YI-PFFVS---TTLGTTS-----------CYRK--------------SQ-GIE--------- 580 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g-~i-p~~Vv---ataGTT~-----------c~~~--------------ld-Gi~--------- 580 (891)
+|+++|++++.+....+ .+ .++++ +-.|++. |.++ .+ +..
T Consensus 200 ~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~ 279 (481)
T PTZ00377 200 LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLL 279 (481)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHH
Confidence 99999999997643322 12 23333 2356654 3221 11 100
Q ss_pred Cc--------cEEEE-cCcccC-Ccc-cccEEEEEe--CCccchhhhccCCCccccCCCCCccccCCcccccccccchHH
Q psy852 581 YA--------DSFNV-NVNKWL-LTA-FDSSCLWVA--DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKL 647 (891)
Q Consensus 581 ~a--------DSIs~-d~HK~L-~~P-~g~G~llvR--~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~l 647 (891)
.. .-|++ +..|.+ +.| .=+|++++- +++.+.........++ ....+.+
T Consensus 280 ~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~-------------------~~~~~~Q 340 (481)
T PTZ00377 280 ELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINL-------------------CSNVVGQ 340 (481)
T ss_pred hhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheec-------------------CCChHHH
Confidence 00 12333 577853 322 447777652 3322221111110000 0112334
Q ss_pred HHHHHHHH-----H---hhHHHHH----HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEec-CCc-chh-----hhh
Q psy852 648 WFVIRTYG-----L---SGLQKYI----RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLR-SEN-NLI-----ADQ 708 (891)
Q Consensus 648 W~~L~~lG-----~---~G~~~~i----~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~-~~~-~~~-----~d~ 708 (891)
+++...+. . +.+.+.+ ++..+.++.+.+.|++++++++..+....-++.++. +.. ... .+
T Consensus 341 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~- 419 (481)
T PTZ00377 341 LMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLA- 419 (481)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCC-
Confidence 44444331 1 1122222 233566778888998888888764333233333442 110 000 00
Q ss_pred hHHHH-HHHHHhCCcEEEeecccc---CCeEE-EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 709 NNRKL-LEDINASGRLHMVPASQE---QNDEV-FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 709 ln~~L-~~~L~~~G~~~~s~s~~~---g~~~l-~sv~~~tT~edId~li~~L~ei~~ 760 (891)
....+ ...|.+.|+.++-++... +...+ +++. ++++++++.++.|.+...
T Consensus 420 ~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~ 474 (481)
T PTZ00377 420 PDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHE 474 (481)
T ss_pred cHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 01223 355567798866555442 23456 8886 678899999999987764
No 480
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=96.91 E-value=0.0073 Score=69.11 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=66.4
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHHc
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEF 224 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~~ 224 (891)
|+++.-+.......+...|.+++.++.++++.+|+++|++.+.... +-+|+++..+|.||.+-|.+++.++++..
T Consensus 130 Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~P~NPTG~~~~~~~l~~l~~~~ 204 (380)
T PLN03026 130 IIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHK-----PKLLFLTSPNNPDGSIISDDDLLKILELP 204 (380)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccC-----CcEEEEeCCCCCCCCCCCHHHHHHHHhcC
Confidence 5555545444444556678899999998889999999999884221 34666678999999999999999999764
Q ss_pred CCceeeecccc
Q psy852 225 DVWLHVDGAYA 235 (891)
Q Consensus 225 ~~~lHvDaA~G 235 (891)
+++++|-||.
T Consensus 205 -~~vi~DeaY~ 214 (380)
T PLN03026 205 -ILVVLDEAYI 214 (380)
T ss_pred -CEEEEECcch
Confidence 8999999994
No 481
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=96.90 E-value=0.036 Score=63.82 Aligned_cols=265 Identities=14% Similarity=0.101 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhccCCccccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchH----H
Q psy852 443 RRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS----C 518 (891)
Q Consensus 443 ~~~lelAr~l~~~L~~~~~~eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~----S 518 (891)
+.++++|+.+.+++...+.++ ++++||||++.|+..||..-.++ .+|-+.-.-|= .
T Consensus 93 e~Ei~~Aell~~~~p~~e~vr----fvnSGTEAtmsAiRlARa~TgR~----------------kIikF~G~YHG~~D~~ 152 (432)
T COG0001 93 ELEVELAELLIERVPSIEKVR----FVNSGTEATMSAIRLARAYTGRD----------------KIIKFEGCYHGHSDSL 152 (432)
T ss_pred HHHHHHHHHHHHhcCcccEEE----EecchhHHHHHHHHHHHHhhCCC----------------eEEEEcCCCCCCccHH
Confidence 567888888888887665554 55689999999999999854321 12223323332 2
Q ss_pred HHHHH----HH-----cCc------eEEEecCCCCCCcCHHHHHHHHHhhhhcCCccEEEE-----ecCCccc-------
Q psy852 519 VEKAA----MM-----AFV------RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVS-----TTLGTTS------- 571 (891)
Q Consensus 519 v~Kaa----~l-----~gv------~v~~Vp~d~~G~mD~~~Le~aI~~d~~~g~ip~~Vv-----ataGTT~------- 571 (891)
+.++. .+ .|+ .++.+|-+ |+++|++++++. |.-+..|+ .+.|...
T Consensus 153 lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~ 224 (432)
T COG0001 153 LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLE 224 (432)
T ss_pred HhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHH
Confidence 22221 01 111 23444543 688888888774 22233333 2334422
Q ss_pred -----hhhh----------------hcCCCC-----ccEEEEcCcccCCcccccEEEEEeCCccchhhhc-cCCCccccC
Q psy852 572 -----CYRK----------------SQGIEY-----ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALV-VDPLYLQHG 624 (891)
Q Consensus 572 -----c~~~----------------ldGi~~-----aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~-~~~~Yl~~~ 624 (891)
|+++ +-|.+. .|-. ..-|.+++=+++|++--|.+ +.+.+. ..+-|.
T Consensus 225 ~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP~ga~gGr~e--iM~~~~p~g~vyq--- 297 (432)
T COG0001 225 GLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGGGLPIGAFGGRAE--IMEQLAPLGPVYQ--- 297 (432)
T ss_pred HHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcCCcceeeeccHHH--HHhhhCCCCCccc---
Confidence 3331 122222 3443 35788888888899877765 222221 111221
Q ss_pred CCCCccccCCcccccccccchHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccC---CCcEEeCCCceeEEEEEecC
Q psy852 625 HEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGL-SGLQKYIRRHCELAKLFEGKVRRD---PRFEISNDVRLGLVCFRLRS 700 (891)
Q Consensus 625 ~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~-~G~~~~i~~~~~lA~~L~~~L~~~---~~~eil~~~~~~iV~Fr~~~ 700 (891)
.-|+.+ -+....+-.++|+.+-. ++ ..++..+++++|.+.|++. -++.+.....-+.++|.|.+
T Consensus 298 --------aGT~sg-nplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~ 365 (432)
T COG0001 298 --------AGTLSG-NPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTE 365 (432)
T ss_pred --------cCCCCC-cHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecC
Confidence 111111 11111222344444443 23 3455566666666666552 23433222234567777765
Q ss_pred Ccc--------hhhhhhHHHHHHHHHhCCcEEEeeccccCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy852 701 ENN--------LIADQNNRKLLEDINASGRLHMVPASQEQNDEVFELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 701 ~~~--------~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l~sv~~~tT~edId~li~~L~ei~~ 760 (891)
... .+.+ .-.++...|.++|++ +.++..+. .| ++...|++|||++++++++..+
T Consensus 366 ~~~~n~~da~~sd~~-~~~~~~~~~l~~GV~-l~ps~~ea---~f-lS~ahte~di~~~~~a~~~~~~ 427 (432)
T COG0001 366 EGVRNYADAKRSDVE-RFAKFFHHLLNRGVY-LAPSQFEA---GF-LSTAHTEEDIDRTLEAADEAFK 427 (432)
T ss_pred CCCCCHHHHHhhchH-HHHHHHHHHHhCCcc-cCCccccc---ee-eecccCHHHHHHHHHHHHHHHH
Confidence 321 1222 234566688888976 44433221 11 3445699999999999997764
No 482
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=96.90 E-value=0.1 Score=59.61 Aligned_cols=238 Identities=7% Similarity=-0.051 Sum_probs=124.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~mD~~~ 545 (891)
+|.|+++++..++.+. .+ +...|++..-..+....++...|.+++.+|.+. ...+|+++
T Consensus 98 ~t~G~~~~i~~~~~~~----~~---------------~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~ 158 (385)
T PRK09276 98 SLIGSKEGIAHIPLAF----VN---------------PGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDA 158 (385)
T ss_pred EccCcHHHHHHHHHHh----CC---------------CCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHH
Confidence 5678888877665442 10 122466666666666777788899999999864 35689999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh-----h---------cC--------CCC---ccEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK-----S---------QG--------IEY---ADSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~-----l---------dG--------i~~---aDSIs 586 (891)
+++.+.+.. ..++++ +-.|++. |.++ + ++ +.. ..-..
T Consensus 159 l~~~~~~~~----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 234 (385)
T PRK09276 159 IPEDVAKKA----KLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEF 234 (385)
T ss_pred HHHhccccc----eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEE
Confidence 988876421 233333 3355554 2221 0 11 000 01123
Q ss_pred EcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHHHHH
Q psy852 587 VNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQKYI 663 (891)
Q Consensus 587 ~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~~~i 663 (891)
-+..|.++.| .=+|+++. +++.+ +.+.....++. .....+.+..+...+. ..-+++..
T Consensus 235 ~S~SK~~g~~GlRiG~~i~-~~~l~-~~~~~~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~~~~~~ 295 (385)
T PRK09276 235 HSLSKTYNMTGWRIGFAVG-NADLI-AGLGKVKSNVD-----------------SGVFQAIQEAGIAALNGPQEVVEELR 295 (385)
T ss_pred ecchhhcCCcchhheeeeC-CHHHH-HHHHHHHhhcc-----------------CCCCHHHHHHHHHHHcCcHHHHHHHH
Confidence 4566766544 22566653 22222 21110000000 0001122223333332 23345555
Q ss_pred HHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeecccc--CCeEE-EEe
Q psy852 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQE--QNDEV-FEL 739 (891)
Q Consensus 664 ~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~--g~~~l-~sv 739 (891)
+...+.++++.+.|++. ++++..+.....+++++++. ....++.+.|. +.|+.+..+.... +...+ +++
T Consensus 296 ~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~~~------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~ 368 (385)
T PRK09276 296 KIYQERRDILVEGLRKL-GLEVEPPKATFYVWAPVPKG------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL 368 (385)
T ss_pred HHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEECCCC------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe
Confidence 55677788898999886 67665433333356666431 23467777775 5788755544332 23456 887
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy852 740 QERKRKDDLAYKRSFFV 756 (891)
Q Consensus 740 ~~~tT~edId~li~~L~ 756 (891)
. .+++++++.++.|.
T Consensus 369 ~--~~~~~l~~~l~~l~ 383 (385)
T PRK09276 369 T--VPDERIEEAVERIK 383 (385)
T ss_pred C--CCHHHHHHHHHHHh
Confidence 6 35677776666554
No 483
>PRK08068 transaminase; Reviewed
Probab=96.90 E-value=0.17 Score=57.97 Aligned_cols=237 Identities=7% Similarity=-0.011 Sum_probs=126.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCCcCHHH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNSLRGAT 545 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~mD~~~ 545 (891)
+|.|+++++..++.+. . .+...|++..-++.....++...|++++.+|.++ +..+|+++
T Consensus 99 it~G~~~~l~~~~~~~----~---------------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~ 159 (389)
T PRK08068 99 ILFGGKAGLVELPQCL----M---------------NPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTK 159 (389)
T ss_pred EcCCcHHHHHHHHHHh----C---------------CCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHH
Confidence 5778888776544331 1 1123477777777777788888899999999975 35789999
Q ss_pred HHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC------CCCc-----cEEE
Q psy852 546 LRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG------IEYA-----DSFN 586 (891)
Q Consensus 546 Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG------i~~a-----DSIs 586 (891)
|++.+.+. ...++++ +-.|++. |.++ .++ +... .-+.
T Consensus 160 l~~~~~~~----~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~ 235 (389)
T PRK08068 160 IPEEVAEK----AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIEL 235 (389)
T ss_pred HHHhcccc----ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEE
Confidence 99988642 1233333 3456654 3221 111 0000 1122
Q ss_pred EcCcccCCcc-cccEEEEEeCCccchhhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHH--HHhhHHHH
Q psy852 587 VNVNKWLLTA-FDSSCLWVADRYKLTSALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTY--GLSGLQKY 662 (891)
Q Consensus 587 ~d~HK~L~~P-~g~G~llvR~~~~L~~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~l--G~~G~~~~ 662 (891)
-+..|.++.| .=+|+++. +++.+ +.+. ....| .. + ..+..+.++...+ +..-+++.
T Consensus 236 ~S~SK~~g~~GlRiG~~~~-~~~l~-~~l~~~~~~~--------------~~--~--~~~~~q~~~~~~l~~~~~~~~~~ 295 (389)
T PRK08068 236 YTLSKTFNMAGWRVAFAVG-NESVI-EAINLLQDHL--------------FV--S--LFGAIQDAAIEALLSDQSCVAEL 295 (389)
T ss_pred ecchhccCCccceeEeEec-CHHHH-HHHHHHHhhc--------------cC--C--CChHHHHHHHHHHhCcHHHHHHH
Confidence 3556665433 23555543 22211 1111 00000 00 0 0011122222222 23445666
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEeCCCcee-EEEEEecCCcchhhhhhHHHHHHHHHh-CCcEEEeecc--ccCCeEE-E
Q psy852 663 IRRHCELAKLFEGKVRRDPRFEISNDVRLG-LVCFRLRSENNLIADQNNRKLLEDINA-SGRLHMVPAS--QEQNDEV-F 737 (891)
Q Consensus 663 i~~~~~lA~~L~~~L~~~~~~eil~~~~~~-iV~Fr~~~~~~~~~d~ln~~L~~~L~~-~G~~~~s~s~--~~g~~~l-~ 737 (891)
.+...+.++++.+.|++. ++.+. ++..+ .+++++.+. ....++.+.|.+ .|+.+.-+.. ..+...+ +
T Consensus 296 ~~~~~~~r~~~~~~L~~~-g~~~~-~~~g~~~~~v~~~~~------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 367 (389)
T PRK08068 296 VARYESRRNAFISACREI-GWEVD-APKGSFFAWMPVPKG------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRV 367 (389)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCCC------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEE
Confidence 677777888888888876 56544 44444 466777532 134678888876 5887554432 2234456 8
Q ss_pred EecCCCCHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVR 757 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~e 757 (891)
+++. .++.++..++.|.+
T Consensus 368 ~~~~--~~~~l~~al~~l~~ 385 (389)
T PRK08068 368 GLLT--DEERLREAVERIGK 385 (389)
T ss_pred EEcC--CHHHHHHHHHHHHH
Confidence 8853 45666666655544
No 484
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=96.89 E-value=0.054 Score=62.73 Aligned_cols=185 Identities=11% Similarity=0.124 Sum_probs=107.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----HHHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
.+++|+.++..++.+. .+ +.-.|+++...|.. ..+.+...|++++.++.+ |+
T Consensus 90 ~~~sG~~Ai~~~l~al----l~---------------~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~ 145 (403)
T PRK07810 90 ATASGMSAVFTALGAL----LG---------------AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DL 145 (403)
T ss_pred EECChHHHHHHHHHHH----hC---------------CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CH
Confidence 4567777777655442 11 11236666655522 233344567888887653 88
Q ss_pred HHHHHHHHhhhhcCCccEEE---EecCCccc--------hhhh-----hc----------CC-CCccEEEEcCcccCCcc
Q psy852 544 ATLRQVMQQDETMGYIPFFV---STTLGTTS--------CYRK-----SQ----------GI-EYADSFNVNVNKWLLTA 596 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~V---vataGTT~--------c~~~-----ld----------Gi-~~aDSIs~d~HK~L~~P 596 (891)
++|+++|++.++ .+++ .+-.|... |+++ +| ++ -++|-+..++|||++++
T Consensus 146 ~~l~~ai~~~tk----lV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~ 221 (403)
T PRK07810 146 SQWEEALSVPTQ----AVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQ 221 (403)
T ss_pred HHHHHhcCcCce----EEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCC
Confidence 888888876422 1222 12233322 3321 11 11 25899999999999876
Q ss_pred cc--cEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy852 597 FD--SSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 674 (891)
Q Consensus 597 ~g--~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~ 674 (891)
-+ .|+++.++. .+...+. .+++. .+.....+-.|..++ |.+-+..++++..+++.+++
T Consensus 222 g~~~gG~v~~~~~-~~~~~l~---~~~~~--------------~g~~~s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a 281 (403)
T PRK07810 222 GRVLGGAILGDRE-YIDGPVQ---KLMRH--------------TGPALSAFNAWVLLK--GLETLALRVRHSNASALRIA 281 (403)
T ss_pred cCceeEEEEeChH-HHHHHHH---HHHHH--------------hCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHH
Confidence 54 466665443 3321111 01110 011234456666554 77788999999999999999
Q ss_pred HHhccCCCcEEeC-C-----C-----------ceeEEEEEecC
Q psy852 675 GKVRRDPRFEISN-D-----V-----------RLGLVCFRLRS 700 (891)
Q Consensus 675 ~~L~~~~~~eil~-~-----~-----------~~~iV~Fr~~~ 700 (891)
+.|++.|.++-+. | | ..++++|.+.+
T Consensus 282 ~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 282 EFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 9999999876432 1 2 13699999964
No 485
>PRK09148 aminotransferase; Validated
Probab=96.89 E-value=0.13 Score=59.28 Aligned_cols=258 Identities=10% Similarity=0.028 Sum_probs=134.4
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCCCCCcC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLR 542 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~~G~mD 542 (891)
+|+ +|+|+++++..++.+... +.-.|++..-.+......+...|++++.+|.+.++. +
T Consensus 94 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~ 151 (405)
T PRK09148 94 QVV--ATLGSKEGFANMAQAITA-------------------PGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-F 151 (405)
T ss_pred cEE--EcCChHHHHHHHHHHhcC-------------------CCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-C
Confidence 455 788999988776654311 112366666666666667777899999999876543 3
Q ss_pred HHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcC--------CCCc-c--
Q psy852 543 GATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQG--------IEYA-D-- 583 (891)
Q Consensus 543 ~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldG--------i~~a-D-- 583 (891)
+++|+++++....+ ..-++++ +-.|++. |.++ .++ +... +
T Consensus 152 ~~~l~~~~~~~~~~-~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~ 230 (405)
T PRK09148 152 FPALERAVRHSIPK-PIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVT 230 (405)
T ss_pred ccCHHHHHhhcccc-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcE
Confidence 55666666543221 1222222 3456654 2221 011 0100 1
Q ss_pred EEEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--HhhHH
Q psy852 584 SFNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG--LSGLQ 660 (891)
Q Consensus 584 SIs~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG--~~G~~ 660 (891)
-..-+..|.++.| .=+|+++. ++..+. .+.....++ .++ ...+.+.++...+. ..-++
T Consensus 231 i~~~SfSK~~~~pGlR~G~~v~-~~~~i~-~l~~~~~~~-----------~~~------~~~~~q~~~~~~L~~~~~~~~ 291 (405)
T PRK09148 231 VEFTSMSKTFSMAGWRMGFAVG-NERLIA-ALTRVKSYL-----------DYG------AFTPIQVAATAALNGPQDCIA 291 (405)
T ss_pred EEEeccccccCCcchheeeeeC-CHHHHH-HHHHHHHHh-----------ccC------CChHHHHHHHHHHhCcHHHHH
Confidence 1234566766645 33566653 222221 111000010 000 01223333444442 22344
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCcchhhhhhHHHHHHHHH-hCCcEEEeeccc--cCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDIN-ASGRLHMVPASQ--EQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~~~~~d~ln~~L~~~L~-~~G~~~~s~s~~--~g~~~l- 736 (891)
+..+...+..+++.+.|++. ++.+..+....-+++++++... +....++.+.|. +.|+.+.-+... .+...+
T Consensus 292 ~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~~---~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~R 367 (405)
T PRK09148 292 EMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIPEAFR---HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVR 367 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECCCccC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEE
Confidence 44555677777888888875 5554433333456666643200 011346767665 578876554432 223456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q psy852 737 FELQERKRKDDLAYKRSFFVRMLGLVCFRLRS 768 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~~~~~~~l~~ 768 (891)
+++. .+.+.+++.++.|.+++....|++-+
T Consensus 368 i~~~--~~~~~l~~al~~l~~~l~~~~~~~~~ 397 (405)
T PRK09148 368 IALV--ENEQRIRQAARNIKRFLSSADETLHN 397 (405)
T ss_pred EEec--CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8775 46788888888888888766666644
No 486
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.036 Score=62.10 Aligned_cols=182 Identities=15% Similarity=0.238 Sum_probs=102.9
Q ss_pred HHHcCceEEEecCCCCCCcCHHHHHHHHHhhhh-------------------------cCCccEEEEecCCccc-hhhhh
Q psy852 523 AMMAFVRLKILEPDDKNSLRGATLRQVMQQDET-------------------------MGYIPFFVSTTLGTTS-CYRKS 576 (891)
Q Consensus 523 a~l~gv~v~~Vp~d~~G~mD~~~Le~aI~~d~~-------------------------~g~ip~~VvataGTT~-c~~~l 576 (891)
..-+|++++.|..+ |++.++++|+++++ +..+|++|.+|.+|.. |+-.-
T Consensus 122 l~~~Gi~v~fvd~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~ 196 (426)
T COG2873 122 LKRLGIEVRFVDPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIE 196 (426)
T ss_pred HHhcCcEEEEeCCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhh
Confidence 34567777777654 36666666655432 1345677777777754 22111
Q ss_pred cCCCCccEEEEcCcccCCccc-ccEEEEEeCCc-------cchhhhccCCCccccCCCCCccccCCc----cccccccc-
Q psy852 577 QGIEYADSFNVNVNKWLLTAF-DSSCLWVADRY-------KLTSALVVDPLYLQHGHEGAIDYRHWG----IPLSRRFR- 643 (891)
Q Consensus 577 dGi~~aDSIs~d~HK~L~~P~-g~G~llvR~~~-------~L~~~l~~~~~Yl~~~~e~~~~~~~~t----i~~SRr~~- 643 (891)
-+||-+.=|.-||+++.- ..|.+++-... .....-..++.|..-.....+....+. .++-|-+.
T Consensus 197 ---hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa 273 (426)
T COG2873 197 ---HGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGA 273 (426)
T ss_pred ---cCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhccc
Confidence 258999999999998763 34555554321 111111133444321111100000011 11222211
Q ss_pred ---chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCc
Q psy852 644 ---SLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSEN 702 (891)
Q Consensus 644 ---aL~lW~~L~~lG~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~ 702 (891)
+...|..+ .|.+-+.-++++++++|..+++.|+++|.+.-++-| .-+|++|.+++.
T Consensus 274 ~lsPfnAfl~l--qGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg- 350 (426)
T COG2873 274 TLSPFNAFLLL--QGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGG- 350 (426)
T ss_pred ccCcHHHHHHH--hchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecCh-
Confidence 24455554 488888999999999999999999999988776522 126889999865
Q ss_pred chhhhhhHHHHHHHHHh
Q psy852 703 NLIADQNNRKLLEDINA 719 (891)
Q Consensus 703 ~~~~d~ln~~L~~~L~~ 719 (891)
.+..+++.+.|..
T Consensus 351 ----~ea~~~fi~~l~L 363 (426)
T COG2873 351 ----YEAGKKFIDALKL 363 (426)
T ss_pred ----HHHHHHHHHHHHH
Confidence 2334455555543
No 487
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.078 Score=60.51 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=84.7
Q ss_pred ccEEEEcCcccCCcccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHHH
Q psy852 582 ADSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQK 661 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~~ 661 (891)
-|=+++ -|.|++=++.|+++.++. .. ..+. .+. .+-|+. +.+......-++++.+-.++
T Consensus 246 PDI~tl--aK~LgGG~PigA~la~~~-~~-~~~~-------~G~------HgSTfG-GNpLacAv~~a~l~~l~~e~--- 304 (404)
T COG4992 246 PDILTL--AKALGGGFPIGAMLATEE-IA-SAFT-------PGD------HGSTFG-GNPLACAVALAVLEVLLEEG--- 304 (404)
T ss_pred CCEEEe--eccccCCccceeeEEchh-hh-hcCC-------CCc------ccCCCC-cCHHHHHHHHHHHHHHcchh---
Confidence 365554 577777788999999832 11 1111 000 011111 12222222233444455554
Q ss_pred HHHHHHHHHHHHHHHhccC-CCcEEeCCCc-e-eEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-E
Q psy852 662 YIRRHCELAKLFEGKVRRD-PRFEISNDVR-L-GLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV-F 737 (891)
Q Consensus 662 ~i~~~~~lA~~L~~~L~~~-~~~eil~~~~-~-~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l-~ 737 (891)
.+++..+..++|.++|+++ ..+.++.+.+ . -++-..+.+. .....+...+.+.|++.. .-+..++ |
T Consensus 305 ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~------~~a~~~~~~~~~~gvL~~----~a~~~ViR~ 374 (404)
T COG4992 305 LLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEP------YRARDIVRALREEGVLVL----PAGPNVIRF 374 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCc------ccHHHHHHHHHHCCeEEe----cCCCCeEEe
Confidence 4455566777788877764 2233333322 2 2445555432 135688899999997732 2233467 8
Q ss_pred EecCCCCHHHHHHHHHHHHHHHH
Q psy852 738 ELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 738 sv~~~tT~edId~li~~L~ei~~ 760 (891)
.+..-++++|||..++.|++.+.
T Consensus 375 ~PpL~i~~eei~~~~~~l~~~l~ 397 (404)
T COG4992 375 LPPLVITEEEIDEALDALERALA 397 (404)
T ss_pred cCCccCCHHHHHHHHHHHHHHHH
Confidence 88888999999999999998874
No 488
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=96.88 E-value=0.13 Score=59.01 Aligned_cols=253 Identities=12% Similarity=0.020 Sum_probs=135.9
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
.|+ +++|+++++..++.+... +.-.|+++.-........+...|.+++.+|.+ .++.
T Consensus 97 ~i~--~t~G~~~al~~~~~~l~~-------------------~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~ 155 (401)
T TIGR01264 97 DVV--LCSGCSHAIEMCIAALAN-------------------AGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWE 155 (401)
T ss_pred HEE--ECcChHHHHHHHHHHhCC-------------------CCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCC
Confidence 355 688999988777654311 11135555555556667777888999888875 3578
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC---------CCcc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI---------EYAD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi---------~~aD 583 (891)
+|+++|++++++.. ..++++ +-.|++. |.++ .++- ....
T Consensus 156 ~d~~~l~~~~~~~~----~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 231 (401)
T TIGR01264 156 IDLKQLESLIDEKT----AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVP 231 (401)
T ss_pred CCHHHHHHHhccCc----eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCc
Confidence 99999999886532 122222 2355553 2221 1120 0001
Q ss_pred E-EEEcCcccCCcc-cccEEEEEeCCc-cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---Hh
Q psy852 584 S-FNVNVNKWLLTA-FDSSCLWVADRY-KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LS 657 (891)
Q Consensus 584 S-Is~d~HK~L~~P-~g~G~llvR~~~-~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~ 657 (891)
- +.-+..|.++.| .-+|+++..+.. .+...+..-... .. ..++ ...+.+.++...+- ..
T Consensus 232 vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~-~~--------~~~~------~~~~~q~a~~~~l~~~~~~ 296 (401)
T TIGR01264 232 ILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKL-SQ--------RILG------PCTIVQGALPSILLRTPQE 296 (401)
T ss_pred EEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHH-hh--------ccCC------CCcHHHHHHHHHHHhCcHH
Confidence 2 244577854434 457777765421 111111000000 00 0000 01233333333332 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCceeEEEEEecCCc-chhhhhhHHHHHHHHH-hCCcEEEeeccccCCeE
Q psy852 658 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSEN-NLIADQNNRKLLEDIN-ASGRLHMVPASQEQNDE 735 (891)
Q Consensus 658 G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~~iV~Fr~~~~~-~~~~d~ln~~L~~~L~-~~G~~~~s~s~~~g~~~ 735 (891)
-+++..+...+..+++.+.|++.+++.+..+...+-+.++++... +. .....++.+.|. +.|+.+..+........
T Consensus 297 ~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~ 374 (401)
T TIGR01264 297 YFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPE--FKNDVEFTERLVAEQSVFCLPGSCFEYPGF 374 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCC--CCCHHHHHHHHHHhCCEEEeCchhcCCCCe
Confidence 455566666777888999998887766554545566666664210 00 012456777775 67987655444433445
Q ss_pred E-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 736 V-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 736 l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
+ ++++. .+++++..++.|.+.+
T Consensus 375 iRis~~~--~~~~l~~~l~rl~~~~ 397 (401)
T TIGR01264 375 FRVVLTV--PVVMMEEACSRIQEFC 397 (401)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHH
Confidence 6 88864 4788888888877654
No 489
>PLN02656 tyrosine transaminase
Probab=96.87 E-value=0.14 Score=59.08 Aligned_cols=251 Identities=7% Similarity=0.000 Sum_probs=135.7
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCCC--CCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDD--KNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d~--~G~ 540 (891)
+|+ +|+|+++++..++.+.- . +.-.|++++-.|.....++.+.|++++.+|+++ ++.
T Consensus 98 ~i~--~t~G~~~al~~~~~~l~----~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~ 156 (409)
T PLN02656 98 DVF--ITSGCTQAIDVALSMLA----R---------------PGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWE 156 (409)
T ss_pred cEE--EeCChHHHHHHHHHHHh----C---------------CCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCC
Confidence 555 78899998877665531 1 112477777778777777778899999999853 468
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCCC-----Ccc----
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGIE-----YAD---- 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi~-----~aD---- 583 (891)
+|+++|++++++.+ .-++++ +-.|++. |.++ .++-. ..|
T Consensus 157 ~d~~~l~~~~~~~~----~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 232 (409)
T PLN02656 157 VDLDAVEALADQNT----VALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVP 232 (409)
T ss_pred CCHHHHHHHhccCc----eEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCc
Confidence 99999999886532 112222 2345542 2221 11100 001
Q ss_pred EE-EEcCcccCCcc-cccEEEEEeCCc------cchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH
Q psy852 584 SF-NVNVNKWLLTA-FDSSCLWVADRY------KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG 655 (891)
Q Consensus 584 SI-s~d~HK~L~~P-~g~G~llvR~~~------~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG 655 (891)
.| .-++.|.++.| .=+|+++..+++ .+...+.... .. .. ....+.++++...+.
T Consensus 233 vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~--------------~~-~~---~~s~~~q~a~~~~l~ 294 (409)
T PLN02656 233 VLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYF--------------DI-LG---GPATFIQAAVPTILE 294 (409)
T ss_pred EEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHH--------------hh-hc---CCCHHHHHHHHHHHh
Confidence 12 23477765545 556777764321 1111111000 00 00 011234444444442
Q ss_pred ---HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce-eEEEEEecCCcchhhhhhHHH-HHHHHHhCCcEEEeeccc
Q psy852 656 ---LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL-GLVCFRLRSENNLIADQNNRK-LLEDINASGRLHMVPASQ 730 (891)
Q Consensus 656 ---~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~-L~~~L~~~G~~~~s~s~~ 730 (891)
..-+++..+...+.++.+.+.|++++++....+|+- .-++.+++........ .... +...|.+.|+.+.-++..
T Consensus 295 ~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~-~~~~~~~~~l~~~gV~v~pg~~f 373 (409)
T PLN02656 295 QTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDIS-DDIDFCFKLAREESVIILPGTAV 373 (409)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCC-CHHHHHHHHHHhCCEEEecchhc
Confidence 233556666667778888899988765543334544 3455555311000000 1223 445667789886655544
Q ss_pred cCCeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 731 EQNDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 731 ~g~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
.....+ +++.. +++.+++.++.|++.+
T Consensus 374 g~~~~iRi~~~~--~~e~l~eal~rl~~~~ 401 (409)
T PLN02656 374 GLKNWLRITFAA--DPSSLEEALGRIKSFY 401 (409)
T ss_pred CCCCeEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 444566 88874 6788888887777654
No 490
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=96.86 E-value=0.017 Score=68.14 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=69.8
Q ss_pred EEecCCCChHHHHHHH-HcCCeEEEEecC--CCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHH---HHH
Q psy852 145 AYCSKEAHSCVEKAAM-MAFVRLKILEPD--DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLA---EIG 218 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~-~~~~~v~~V~~d--~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~---~I~ 218 (891)
|++..-........+. ..|.+++.|+++ +...+|+++|++.+++..+++..+-+|.++--+|.||.+-+.+ +|+
T Consensus 138 Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll 217 (468)
T PLN02450 138 FLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLV 217 (468)
T ss_pred EEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHH
Confidence 5555445555555554 467899999986 3457899999999887555555566666777899999997654 667
Q ss_pred HHHHHcCCceeeeccccCCc
Q psy852 219 PVAKEFDVWLHVDGAYAGSS 238 (891)
Q Consensus 219 ~i~~~~~~~lHvDaA~GG~~ 238 (891)
++|++++++|.+|=+|+.+.
T Consensus 218 ~~a~~~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 218 DFITAKNIHLISDEIYSGTV 237 (468)
T ss_pred HHHHHCCcEEEEEccccccc
Confidence 78889999999999996543
No 491
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=96.86 E-value=0.06 Score=61.35 Aligned_cols=112 Identities=10% Similarity=0.002 Sum_probs=71.0
Q ss_pred cccchhHHHHHHHHHHHHhccccCCccccccccCCeEEEecCCCChHHHHHHHHcCCeEE------EEecCCCC-cccHH
Q psy852 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK------ILEPDDKN-SLRGA 180 (891)
Q Consensus 108 ~~~gGt~~~~~~~~~~ar~~~~~~~~~~~g~~~~~~~v~~S~~~H~Sv~kaa~~~~~~v~------~V~~d~~g-~id~~ 180 (891)
++++|+. .|...+.++|...+ .+-+|.....-|-|..-++.+.+.+.. .++..... ..|++
T Consensus 89 ~~~SGse-A~~~Al~~ar~~~~-----------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~ 156 (375)
T PRK04260 89 FCNSGAE-ANEAAIKIARKATG-----------KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLN 156 (375)
T ss_pred EcCccHH-HHHHHHHHHHHhcC-----------CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHH
Confidence 3467765 45555666775421 122455556679887766644322110 01101111 23889
Q ss_pred HHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 181 TLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 181 ~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
+|++.+.+. +.+|++...++++|.+-| +++|.++|+++|+++++|.++.|+
T Consensus 157 ~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~ 211 (375)
T PRK04260 157 SVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGM 211 (375)
T ss_pred HHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 999877532 357777777788888865 899999999999999999999663
No 492
>PRK09105 putative aminotransferase; Provisional
Probab=96.84 E-value=0.015 Score=66.46 Aligned_cols=84 Identities=11% Similarity=-0.042 Sum_probs=67.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCCCcccHHHHHHHHHhhhhcCCcceEEEeecccCccccccCHHHHHHHHHH-
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKE- 223 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDpl~~I~~i~~~- 223 (891)
|++++-+|+.....+...|.+++.++.++++.+|+++|++.. +. +.+|+++..+|.||.+-+.++|.++++.
T Consensus 122 Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~------~~~v~l~nP~NPTG~~~~~~~l~~l~~~~ 194 (370)
T PRK09105 122 LVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAAD-PN------AGLIYICNPNNPTGTVTPRADIEWLLANK 194 (370)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhcC-CC------CCEEEEeCCCCCCCcCcCHHHHHHHHHhC
Confidence 666677788787777778889999999888999999998752 11 2366667789999999999999988764
Q ss_pred -cCCceeeecccc
Q psy852 224 -FDVWLHVDGAYA 235 (891)
Q Consensus 224 -~~~~lHvDaA~G 235 (891)
+++++.+|-+|.
T Consensus 195 ~~~~~lIvDEaY~ 207 (370)
T PRK09105 195 PAGSVLLVDEAYI 207 (370)
T ss_pred CCCcEEEEECchH
Confidence 389999999993
No 493
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=96.82 E-value=0.02 Score=65.71 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=63.9
Q ss_pred EEecCCCChHHHHHHHHcCCeEEEEecCCC--CcccHHHHHHHHHhhhhcCCcceEEEeecccCcccccc---CHHHHHH
Q psy852 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDK--NSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFD---NLAEIGP 219 (891)
Q Consensus 145 v~~S~~~H~Sv~kaa~~~~~~v~~V~~d~~--g~id~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavD---pl~~I~~ 219 (891)
|++..-.......++...|.+++.||++++ +.+|+++|++.+.+. +-+++++--+|.||.+- .+++|++
T Consensus 120 vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~~~s~~~~~~l~~ 193 (396)
T PRK09147 120 VVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGNPTGAVLPLDDWKKLFA 193 (396)
T ss_pred EEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence 555444444455566777889999999754 479999999877543 23455567799999986 5667778
Q ss_pred HHHHcCCceeeeccccC
Q psy852 220 VAKEFDVWLHVDGAYAG 236 (891)
Q Consensus 220 i~~~~~~~lHvDaA~GG 236 (891)
+|++++++|-+|=+|+-
T Consensus 194 ~a~~~~~~ii~De~y~~ 210 (396)
T PRK09147 194 LSDRYGFVIASDECYSE 210 (396)
T ss_pred HHHHcCeEEEeeccccc
Confidence 88999999999999954
No 494
>PLN02624 ornithine-delta-aminotransferase
Probab=96.82 E-value=0.12 Score=61.28 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=46.7
Q ss_pred cHHHHHHHHHhhhhcCCcceEEEeecccCccccccC----HHHHHHHHHHcCCceeeeccccCC
Q psy852 178 RGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDN----LAEIGPVAKEFDVWLHVDGAYAGS 237 (891)
Q Consensus 178 d~~~L~~~l~~~~~~g~~p~~V~~t~Gtt~~GavDp----l~~I~~i~~~~~~~lHvDaA~GG~ 237 (891)
|++.|++.++.. +..+.+|++.-..+.+|.+-| +++|.++|++||+++++|-++.|+
T Consensus 210 d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~ 270 (474)
T PLN02624 210 DLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL 270 (474)
T ss_pred CHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 689999888632 233567777777888999888 999999999999999999999763
No 495
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.81 E-value=0.098 Score=60.49 Aligned_cols=257 Identities=6% Similarity=-0.008 Sum_probs=136.1
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
.|+ +|.|+++++..++.+.-. +...|++..-........+...|.+++.+|.+ .+..
T Consensus 99 ~I~--it~G~~~al~~~~~~l~~-------------------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (409)
T PLN00143 99 DVY--LTLGCKHAAEIIIKVLAR-------------------PEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWE 157 (409)
T ss_pred hEE--EecChHHHHHHHHHHHcC-------------------CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCc
Confidence 455 677888888777654311 11235555555666667778889999999874 3457
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEE---ecCCccc-----------hhhh--------------hcCC-----CCcc----
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVS---TTLGTTS-----------CYRK--------------SQGI-----EYAD---- 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vv---ataGTT~-----------c~~~--------------ldGi-----~~aD---- 583 (891)
+|+++|++++++.+ ..++++ +-.|++. |.++ .++- ...+
T Consensus 158 ~d~~~l~~~~~~~~----~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 233 (409)
T PLN00143 158 VDLDAVEAIADENT----IAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVP 233 (409)
T ss_pred CCHHHHHHhcccCC----EEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCc
Confidence 99999998876431 222333 2356554 3221 1111 0011
Q ss_pred E-EEEcCcccCCcc-cccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH---Hhh
Q psy852 584 S-FNVNVNKWLLTA-FDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG---LSG 658 (891)
Q Consensus 584 S-Is~d~HK~L~~P-~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG---~~G 658 (891)
. +.-+..|.++.| .-+|+++..++..+.+....-... .. ..... .++ ..+.+.+....+. ..-
T Consensus 234 vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~-~~-------~~~~~-~~~---~~~~q~a~~~~l~~~~~~~ 301 (409)
T PLN00143 234 VITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSI-KK-------ALNPA-PFP---PTFIQAAIPEILEKTTEDF 301 (409)
T ss_pred EEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHH-HH-------HHhcc-CCC---CchHHHHHHHHHhcChHHH
Confidence 1 334577875555 557777765432221100000000 00 00000 000 1233334444442 334
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHH-HHHhCCcEEEeeccccCCeEE
Q psy852 659 LQKYIRRHCELAKLFEGKVRRDPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLE-DINASGRLHMVPASQEQNDEV 736 (891)
Q Consensus 659 ~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~-~L~~~G~~~~s~s~~~g~~~l 736 (891)
+++.++...+..+++.+.|++++...+..+|+ ..-+++++++...... .....+.. .+.+.|+.+.-+........+
T Consensus 302 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~i 380 (409)
T PLN00143 302 FSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDI-EDDMEFCLKLAKEESLIILPGVTVGLKNWL 380 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCC-CCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 66677777777788888888876544444443 4566677642100000 02344544 446789876655544444566
Q ss_pred -EEecCCCCHHHHHHHHHHHHHHH
Q psy852 737 -FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 737 -~sv~~~tT~edId~li~~L~ei~ 759 (891)
+++. ++.+++++.++.|.+.+
T Consensus 381 Ri~~~--~~~~~l~~al~rl~~~l 402 (409)
T PLN00143 381 RITFA--VEQSSLEDGLGRLKSFC 402 (409)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHH
Confidence 8876 35788888888887655
No 496
>PLN02187 rooty/superroot1
Probab=96.79 E-value=0.26 Score=58.16 Aligned_cols=253 Identities=5% Similarity=-0.019 Sum_probs=134.8
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHHHHHHHHHcCceEEEecCC--CCCC
Q psy852 463 EISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPD--DKNS 540 (891)
Q Consensus 463 eVv~~itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~Sv~Kaa~l~gv~v~~Vp~d--~~G~ 540 (891)
+|+ +|.|+++++..++.+.-. +.-.|++..-..+.....+...|.+++.+|.. .+..
T Consensus 133 ~I~--it~G~~~al~~~~~~l~~-------------------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~ 191 (462)
T PLN02187 133 DIF--LTAGCNQGIEIVFESLAR-------------------PNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWE 191 (462)
T ss_pred cEE--EeCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCc
Confidence 566 788999988877665311 11235555555555666677888899988873 4688
Q ss_pred cCHHHHHHHHHhhhhcCCccEEEEe---cCCccc-----------hhhh--------------hcCCCC---------cc
Q psy852 541 LRGATLRQVMQQDETMGYIPFFVST---TLGTTS-----------CYRK--------------SQGIEY---------AD 583 (891)
Q Consensus 541 mD~~~Le~aI~~d~~~g~ip~~Vva---taGTT~-----------c~~~--------------ldGi~~---------aD 583 (891)
+|+++|++++++.+ .-+++++ -.|++. |.++ .++-.. ..
T Consensus 192 ~d~~~l~~~~~~~~----~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~ 267 (462)
T PLN02187 192 IDLEGIEAIADENT----VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP 267 (462)
T ss_pred cCHHHHHHhcCCCc----EEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCc
Confidence 99999998886532 2233332 456654 3221 111000 01
Q ss_pred EEEE-cCcccCCcc-cccEEEEEeCCccch---hhhc-cCCCccccCCCCCccccCCcccccccccchHHHHHHHHHH--
Q psy852 584 SFNV-NVNKWLLTA-FDSSCLWVADRYKLT---SALV-VDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYG-- 655 (891)
Q Consensus 584 SIs~-d~HK~L~~P-~g~G~llvR~~~~L~---~~l~-~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG-- 655 (891)
.|++ +..|.++.| .=+|+++..++..+. ..+. ....+ +.+. ....+.+++....+.
T Consensus 268 vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~------------~~~~----~~s~~~Q~a~~~~L~~~ 331 (462)
T PLN02187 268 VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNL------------DVTP----DPATIIQAALPAILEKA 331 (462)
T ss_pred EEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhc------------cccC----CCCHHHHHHHHHHHhcC
Confidence 2333 566765555 336666654332110 0110 00000 0000 001234444444442
Q ss_pred -HhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCCce-eEEEEEecCCcchhhhhhHHHHHH-HHHhCCcEEEeeccccC
Q psy852 656 -LSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRL-GLVCFRLRSENNLIADQNNRKLLE-DINASGRLHMVPASQEQ 732 (891)
Q Consensus 656 -~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~~~-~iV~Fr~~~~~~~~~d~ln~~L~~-~L~~~G~~~~s~s~~~g 732 (891)
..-+++..+...+.++++.+.|++++.+.....|.. +-+.+++......... ....+.. .+.+.|+.+.-+.....
T Consensus 332 ~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~fg~ 410 (462)
T PLN02187 332 DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIK-DDIDFCVKLAREENLVFLPGDALGL 410 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCC-CHHHHHHHHHhhCCEEEECccccCC
Confidence 234555666677788889999988765543434543 4555555311000000 1234444 44678887665554434
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
..++ +++.. .++.++..++.|.+.+
T Consensus 411 ~~~iRis~~~--~~e~l~~al~rL~~~l 436 (462)
T PLN02187 411 KNWMRITIGV--EAHMLEDALERLKGFC 436 (462)
T ss_pred CCeEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 4566 88763 5788888888887765
No 497
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=96.79 E-value=0.51 Score=54.84 Aligned_cols=147 Identities=6% Similarity=0.037 Sum_probs=81.8
Q ss_pred ccEEEEcCcccCCc-ccccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHH-HHHhhH
Q psy852 582 ADSFNVNVNKWLLT-AFDSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRT-YGLSGL 659 (891)
Q Consensus 582 aDSIs~d~HK~L~~-P~g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~-lG~~G~ 659 (891)
.|-++++ |+++. =+++|+++++++. ..+. ... + ..|.. +-+......-.+++. +....+
T Consensus 256 PDi~~~~--K~lg~~G~pigav~~~~~~---~~~~--~~~--~---------~~T~~-gnpl~~aaa~a~l~~~i~~~~l 316 (412)
T TIGR02407 256 PDIVCLS--KSISGYGLPLALTLIKPEL---DVWK--PGE--H---------NGTFR-GNNLAFVTATAALEYYWSDDAF 316 (412)
T ss_pred CCEEEec--hhccCCccceeEEEEchhh---hccC--CCc--c---------CCCCC-ccHHHHHHHHHHHHHHhcccHH
Confidence 5767665 99875 5778999997652 1111 000 0 01111 111111222344553 333334
Q ss_pred HHHHHHHHHHHHHHHHHhcc----CCCcEEeCCCc-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCe
Q psy852 660 QKYIRRHCELAKLFEGKVRR----DPRFEISNDVR-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQND 734 (891)
Q Consensus 660 ~~~i~~~~~lA~~L~~~L~~----~~~~eil~~~~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~ 734 (891)
. ++..++.++|.++|+. .+.+. ...+. -.++.+.+.+ +.....+...+.++|+++. +... ...
T Consensus 317 ~---~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~l~l~~------~~~~~~~~~~~~~~Gv~v~-~~~~-~~~ 384 (412)
T TIGR02407 317 E---KAVQRKSEIIQERLDRIVAEYPELI-KQVRGRGLMQGIECGD------GDLAGKIAKAAFENGLIIE-TSGP-NDE 384 (412)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhCCCce-EeeecceeEEEEEecC------hHHHHHHHHHHHHCCCEEe-ccCC-CCC
Confidence 3 4444555566555543 34332 22122 2355677743 2345678889999998743 2221 234
Q ss_pred EE-EEecCCCCHHHHHHHHHHHHHHH
Q psy852 735 EV-FELQERKRKDDLAYKRSFFVRML 759 (891)
Q Consensus 735 ~l-~sv~~~tT~edId~li~~L~ei~ 759 (891)
++ +++...+|++|+|++++.|++.+
T Consensus 385 ~lr~~p~l~~t~~~i~~~~~~l~~~l 410 (412)
T TIGR02407 385 VIKLLPPLTIDEETLQQGLDILEQAV 410 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 56 88888999999999999999876
No 498
>PRK07482 hypothetical protein; Provisional
Probab=96.78 E-value=0.49 Score=55.89 Aligned_cols=164 Identities=14% Similarity=0.119 Sum_probs=84.8
Q ss_pred ccEEEEcCcccCCccc-ccEEEEEeCCccchhhhccCCCccccCCCCCccccCCcccccccccchHHHHHHHHHHHhhHH
Q psy852 582 ADSFNVNVNKWLLTAF-DSSCLWVADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQ 660 (891)
Q Consensus 582 aDSIs~d~HK~L~~P~-g~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~~~~~~ti~~SRr~~aL~lW~~L~~lG~~G~~ 660 (891)
.|-+++ -|.++.=+ +.|+++.+++ +.+.+...... . +.. ....|.. +-+......-++|+.+-.+++.
T Consensus 282 PDiv~~--gKgl~gG~~Pi~av~~~~~--i~~~~~~~~~~--~---~~~-~h~~T~~-gnpl~~Aaa~a~L~~~~~~~l~ 350 (461)
T PRK07482 282 PDLITV--AKGLTSAYAPLSGSIVGEK--VWDVLEQGSDE--H---GAI-GHGWTYS-GHPICAAAALANLDILERENLV 350 (461)
T ss_pred CCEEEE--ccccccCccccceeeecHH--HHHHHhccccc--C---Ccc-ccCCCCC-cCHHHHHHHHHHHHHHHhCCHH
Confidence 688886 78876544 6788888765 22222211000 0 000 0011111 2233333444555655555543
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCcEEeCCC-ce-eEEEEEecCCcc--hhh---hhhHHHHHHHHHhCCcEEEeeccccC
Q psy852 661 KYIRRHCELAKLFEGKVRRD-PRFEISNDV-RL-GLVCFRLRSENN--LIA---DQNNRKLLEDINASGRLHMVPASQEQ 732 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~-~~~eil~~~-~~-~iV~Fr~~~~~~--~~~---d~ln~~L~~~L~~~G~~~~s~s~~~g 732 (891)
++..++.++|.+.|+++ ....++.+. .. .++.+.+..... +.. ..+...+...+.+.|++..... +
T Consensus 351 ---~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~---~ 424 (461)
T PRK07482 351 ---GNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP---H 424 (461)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC---C
Confidence 44456666666666542 111122111 11 244455532110 000 1245678888999997742211 2
Q ss_pred CeEE-EEecCCCCHHHHHHHHHHHHHHHHHH
Q psy852 733 NDEV-FELQERKRKDDLAYKRSFFVRMLGLV 762 (891)
Q Consensus 733 ~~~l-~sv~~~tT~edId~li~~L~ei~~~~ 762 (891)
..++ +.+...+|++|||++++.+++.+..+
T Consensus 425 ~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 425 GDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456 77777889999999999999887543
No 499
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=96.78 E-value=0.37 Score=55.59 Aligned_cols=92 Identities=11% Similarity=0.152 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CcEEeCCC-c-eeEEEEEecCCcchhhhhhHHHHHHHHHhCCcEEEeeccccCCeEE-
Q psy852 661 KYIRRHCELAKLFEGKVRRDP-RFEISNDV-R-LGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQNDEV- 736 (891)
Q Consensus 661 ~~i~~~~~lA~~L~~~L~~~~-~~eil~~~-~-~~iV~Fr~~~~~~~~~d~ln~~L~~~L~~~G~~~~s~s~~~g~~~l- 736 (891)
+..++..++.++|.+.|+++. .+.+..++ . ...+.+.+.+.. .....++...|.+.|+... + .+...+
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~~Gv~v~-~---~g~~~lR 375 (403)
T PRK05093 304 EVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAEEGVMVL-V---AGPDVLR 375 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHHCCeEEe-c---CCCCEEE
Confidence 344666777888888887641 12222222 2 234455553210 1245678888988997643 2 233456
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHH
Q psy852 737 FELQERKRKDDLAYKRSFFVRMLG 760 (891)
Q Consensus 737 ~sv~~~tT~edId~li~~L~ei~~ 760 (891)
++++...++++|+++++.|++.+.
T Consensus 376 l~~~~~~~~~~i~~~~~~l~~~l~ 399 (403)
T PRK05093 376 FAPSLVIEEADIDEGLARFEKAVA 399 (403)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 888887899999999999988763
No 500
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=96.77 E-value=0.095 Score=60.96 Aligned_cols=210 Identities=12% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhccCccccccccccceEEEecccchHH----HHHHHHHcCceEEEecCCCCCCcCH
Q psy852 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSC----VEKAAMMAFVRLKILEPDDKNSLRG 543 (891)
Q Consensus 468 itsggsean~~al~aAR~~~~~~~~~~~~~~~~g~~~~~~vI~~S~~aH~S----v~Kaa~l~gv~v~~Vp~d~~G~mD~ 543 (891)
++++|++++..++.+.-. . ++ .|+++...+.. +...+...|++++.++.+ |+
T Consensus 77 ~~~sG~~Ai~~al~~l~~----~--------------Gd-~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~ 132 (418)
T TIGR01326 77 AVASGQAAITYAILNLAQ----A--------------GD-NIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DP 132 (418)
T ss_pred EEccHHHHHHHHHHHHhC----C--------------CC-EEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CH
Confidence 577888888877765411 1 11 35555555433 234445678888888763 88
Q ss_pred HHHHHHHHhhhhcCCccEEEEecC----Cccc--------hhhh-----hcC----------C-CCccEEEEcCcccCCc
Q psy852 544 ATLRQVMQQDETMGYIPFFVSTTL----GTTS--------CYRK-----SQG----------I-EYADSFNVNVNKWLLT 595 (891)
Q Consensus 544 ~~Le~aI~~d~~~g~ip~~Vvata----GTT~--------c~~~-----ldG----------i-~~aDSIs~d~HK~L~~ 595 (891)
++|+++|++.++ .+++ .+. |... |+++ +|. + .++|.+..+.|||+++
T Consensus 133 ~~l~~~l~~~t~----~V~l-e~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g 207 (418)
T TIGR01326 133 EEFEKAIDENTK----AVFA-ETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGG 207 (418)
T ss_pred HHHHHhcCcCCe----EEEE-ECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccC
Confidence 999998865321 2222 222 2222 3331 222 1 3489999999999987
Q ss_pred ccc-cEEEEEeCCccchhhhccCCCccccCCCCCc--------------------cccCCcccccccccchHHHHHHHHH
Q psy852 596 AFD-SSCLWVADRYKLTSALVVDPLYLQHGHEGAI--------------------DYRHWGIPLSRRFRSLKLWFVIRTY 654 (891)
Q Consensus 596 P~g-~G~llvR~~~~L~~~l~~~~~Yl~~~~e~~~--------------------~~~~~ti~~SRr~~aL~lW~~L~~l 654 (891)
+-. .|.+++........ ... -..+........ .....+. ...+...|+.++
T Consensus 208 ~G~~lGg~v~~~~~~~~~-~~~-~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~----~~~p~~a~~~~~-- 279 (418)
T TIGR01326 208 HGTAIGGVIVDGGKFDWA-NGR-FPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGA----ALSPFNAFLLLQ-- 279 (418)
T ss_pred CccceEEEEEeccccccc-ccc-cccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCC----CCCHHHHHHHHC--
Confidence 633 67777754321110 000 000000000000 0000000 112334555433
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCcEEeCCC------------------ceeEEEEEecCCcchhhhhhHHHHHHH
Q psy852 655 GLSGLQKYIRRHCELAKLFEGKVRRDPRFEISNDV------------------RLGLVCFRLRSENNLIADQNNRKLLED 716 (891)
Q Consensus 655 G~~G~~~~i~~~~~lA~~L~~~L~~~~~~eil~~~------------------~~~iV~Fr~~~~~~~~~d~ln~~L~~~ 716 (891)
|...+..++++..+++..+++.|.+.+++..+.-| --++++|.+++. .....++++.
T Consensus 280 ~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~-----~~~~~~f~~~ 354 (418)
T TIGR01326 280 GLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGG-----REAGKKFIDA 354 (418)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCC-----HHHHHHHHHh
Confidence 66677777888888999999999998887654211 125999999643 1223455555
Q ss_pred HHh
Q psy852 717 INA 719 (891)
Q Consensus 717 L~~ 719 (891)
|+-
T Consensus 355 l~l 357 (418)
T TIGR01326 355 LKL 357 (418)
T ss_pred CCc
Confidence 543
Done!