RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy852
(891 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 254 bits (650), Expect = 1e-76
Identities = 112/258 (43%), Positives = 154/258 (59%), Gaps = 37/258 (14%)
Query: 11 QVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAI 70
VT W P FHAYFP+GNSYPS+L DMLSDAI C GF+W +SP+CTELE +V+DWL K +
Sbjct: 33 GVTTWHSPNFHAYFPAGNSYPSLLGDMLSDAINCNGFTWESSPACTELENVVMDWLAKML 92
Query: 71 GLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVL---- 123
GLP++FL GGGV+Q S N++ L
Sbjct: 93 GLPKEFLGSGE----------------------------GGGVLQGGSSESNLLALLAAR 124
Query: 124 TRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLR 183
T+ +++ L KL+AY S +AHS +EKAA++A V L+ + D+ +RG L
Sbjct: 125 TKWIRRMKA--AGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLE 182
Query: 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ +++D+ G IPFFV TLGTT +FD L E+G + ++D+WLHVD AYAGS+FICPE
Sbjct: 183 KAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPE 242
Query: 244 FRPFMNGKTSFDNLHLSP 261
FR ++ G D+ +P
Sbjct: 243 FRHWLFGIERADSFSFNP 260
Score = 242 bits (620), Expect = 2e-72
Identities = 113/269 (42%), Positives = 146/269 (54%), Gaps = 44/269 (16%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+SE + +LAAR + I ++K L KL+AY S +AHS +EKAA++A V
Sbjct: 110 GGSSESNLLALLAARTKWIRRMKAAGK-----PSLGKLVAYTSDQAHSSIEKAALIAGVE 164
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
L+ + D+ +RG L + +++D+ G IPFFV TLGTT
Sbjct: 165 LREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYD 224
Query: 573 -------------------YRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
GIE ADSF+ N +KW+L D S LWV D+ L A
Sbjct: 225 LWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQA 284
Query: 614 LVVDPLYLQHGHEG---AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
L +P YL H + A+DY W IPLSRRFR LKLWFV+R+YG+ GLQ IRRH ELA
Sbjct: 285 LQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELA 344
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLR 699
K FE VR+D RFEI + LGLVCFRL+
Sbjct: 345 KYFEALVRKDSRFEICAERGLGLVCFRLK 373
Score = 220 bits (562), Expect = 3e-64
Identities = 105/270 (38%), Positives = 132/270 (48%), Gaps = 68/270 (25%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVET-------- 319
+SE + +L+AR + I ++K L KL+AY S +AHS +E
Sbjct: 110 GGSSESNLLALLAARTKWIRRMKAAGK-----PSLGKLVAYTSDQAHSSIEKAALIAGVE 164
Query: 320 --------------------------RGHIQSYRDAIF---------------------D 332
G I + A D
Sbjct: 165 LREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYD 224
Query: 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
+WLHVD AYAGS+FICPEFR ++ GIE ADSF+ N +KW+L D S LWV D+ L A
Sbjct: 225 LWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQA 284
Query: 393 LVVDPLYLQHGHEG---AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
L +P YL H + A+DY W IPLSRRFR LKLWFV+R+YG+ GLQ IRRH ELA
Sbjct: 285 LQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELA 344
Query: 450 KLFEGKVRRDPRFEISNDVRSSASECIFVC 479
K FE VR+D RFEI + VC
Sbjct: 345 KYFEALVRKDSRFEICAER-----GLGLVC 369
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 197 bits (503), Expect = 3e-56
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 38/236 (16%)
Query: 20 FHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIGLPEKFLMY 79
F A F + P++L +ML+ A I F+W SP+ TE+E V++WL K GLP
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPS----- 55
Query: 80 PPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQS--VQNI---IVLTRGQKKIHPFV 134
GV S ++ ++ R + +
Sbjct: 56 ----------------------------EDADGVFTSGGSESNLLALLAARDRARKRLKA 87
Query: 135 DEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGY 194
G + KL+ CS +AH VEKAA V+++++ D+ + L + +D+ G
Sbjct: 88 GGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGL 147
Query: 195 IPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250
P V T GTT + D L EI +A+++D+WLHVD AY G PE R G
Sbjct: 148 NPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFG 203
Score = 180 bits (459), Expect = 3e-50
Identities = 76/297 (25%), Positives = 113/297 (38%), Gaps = 81/297 (27%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S SE + +LAAR +A +LK G + KL+ CS +AH VEKAA V+
Sbjct: 64 SGGSESNLLALLAARDRARKRLKA-----GGGRGIDKLVIVCSDQAHVSVEKAAAYLDVK 118
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS------------------ 571
++++ D+ + L + +D+ G P V T GTT
Sbjct: 119 VRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD 178
Query: 572 -------CY-----------RKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
Y GIE DS +V+ +K+ L S + V
Sbjct: 179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV--------- 229
Query: 614 LVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 673
R+LKLW +R +G G ++I R +LAK
Sbjct: 230 -----------------------------RALKLWATLRRFGRDGYGEHIDRIVDLAKYL 260
Query: 674 EGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQ 730
+R DP FE+ + L LVCFRL+ L D+ N L + +N G H+ +
Sbjct: 261 AELIRADPGFELLGEPNLSLVCFRLKPSVKL--DELNYDLSDRLNERGGWHVPATTL 315
Score = 138 bits (349), Expect = 1e-35
Identities = 60/257 (23%), Positives = 85/257 (33%), Gaps = 98/257 (38%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHI---- 323
S SE + +L+AR +A +LK G + KL+ CS +AH VE
Sbjct: 64 SGGSESNLLALLAARDRARKRLKA-----GGGRGIDKLVIVCSDQAHVSVEKAAAYLDVK 118
Query: 324 --------------QSYRDAI------------------------FD------------- 332
++ AI D
Sbjct: 119 VRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD 178
Query: 333 VWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 392
+WLHVD AY G PE R GIE DS +V+ +K+ L S + V
Sbjct: 179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV--------- 229
Query: 393 LVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLF 452
R+LKLW +R +G G ++I R +LAK
Sbjct: 230 -----------------------------RALKLWATLRRFGRDGYGEHIDRIVDLAKYL 260
Query: 453 EGKVRRDPRFEISNDVR 469
+R DP FE+ +
Sbjct: 261 AELIRADPGFELLGEPN 277
Score = 39.9 bits (94), Expect = 0.005
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASF 819
+R++ L LVCFRL+ + D+ N L + +N G H+ +
Sbjct: 263 LIRADPGFELLGEPNLSLVCFRLKPSVKL--DELNYDLSDRLNERGGWHVPATTL 315
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 198 bits (506), Expect = 3e-55
Identities = 112/304 (36%), Positives = 157/304 (51%), Gaps = 54/304 (17%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ +ASE + V +LAAR + + K+ K L KL+ Y S + HS ++KA +A
Sbjct: 151 IQGTASEAVLVVLLAARDRVLRKVGK--------NALEKLVVYASDQTHSALQKACQIAG 202
Query: 528 V---RLKILEPDDKN--SLRGATLRQVMQQDETMGYIPFFVSTTLGTTS----------- 571
+ ++L+ D +L L + + D + G IPFF+ T+GTTS
Sbjct: 203 IHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELG 262
Query: 572 ----------------------C--YRKS-QGIEYADSFNVNVNKWLLTAFDSSCLWVAD 606
C YR G+E ADSFN+N +KW LT FD S LWV D
Sbjct: 263 KIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKD 322
Query: 607 RYKLTSALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYI 663
R L +L +P +L++ A +DY+ W IPL RRFRSLKLW V+R YG+ LQ YI
Sbjct: 323 RNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYI 382
Query: 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQN--NRKLLEDINASG 721
R H +LAK FE V +D RFE+ LVCFRL N + N N LL+ +N+SG
Sbjct: 383 RNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSG 442
Query: 722 RLHM 725
++ +
Sbjct: 443 KIFI 446
Score = 185 bits (471), Expect = 2e-50
Identities = 74/136 (54%), Positives = 95/136 (69%), Gaps = 3/136 (2%)
Query: 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS 391
+W HVD AYAGS+ ICPE+R +++G+E ADSFN+N +KW LT FD S LWV DR L
Sbjct: 269 GMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQ 328
Query: 392 ALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 448
+L +P +L++ A +DY+ W IPL RRFRSLKLW V+R YG+ LQ YIR H +L
Sbjct: 329 SLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKL 388
Query: 449 AKLFEGKVRRDPRFEI 464
AK FE V +D RFE+
Sbjct: 389 AKEFEQLVAQDSRFEV 404
Score = 182 bits (464), Expect = 1e-49
Identities = 93/257 (36%), Positives = 137/257 (53%), Gaps = 37/257 (14%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
VTHWQ P + AY+PS +S L +MLS + +GFSW SP+ TELE IVLDWL K +
Sbjct: 77 VTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLN 136
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQN---IIVLTRGQK 128
LPE+FL GGGVIQ + ++VL +
Sbjct: 137 LPEQFL----------------------------STGNGGGVIQGTASEAVLVVLLAARD 168
Query: 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV---RLKILEPDDKN--SLRGATLR 183
++ V + L KL+ Y S + HS ++KA +A + ++L+ D +L L
Sbjct: 169 RVLRKVGKNAL-EKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLS 227
Query: 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ + D + G IPFF+ T+GTTS + D L E+G +AK +W HVD AYAGS+ ICPE
Sbjct: 228 EAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPE 287
Query: 244 FRPFMNGKTSFDNLHLS 260
+R +++G D+ +++
Sbjct: 288 YRHYIDGVEEADSFNMN 304
Score = 30.3 bits (68), Expect = 5.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 269 SASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
+ASE + V +L+AR + + K+ K L KL+ Y S + HS ++
Sbjct: 154 TASEAVLVVLLAARDRVLRKVGK--------NALEKLVVYASDQTHSALQ 195
Score = 29.5 bits (66), Expect = 8.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 777 PLQLGLVCFRLRSENNVIADQN--NRKLLEDINASGRLHM 814
P LVCFRL N + N N LL+ +N+SG++ +
Sbjct: 407 PRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFI 446
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 171 bits (434), Expect = 3e-45
Identities = 103/302 (34%), Positives = 151/302 (50%), Gaps = 54/302 (17%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
++ + E + V +LAAR + + K+ K LL +L+ Y S + HS KA ++
Sbjct: 199 IQGTGCEAVLVVVLAARDRILKKVGK--------TLLPQLVVYGSDQTHSSFRKACLIGG 250
Query: 528 VR---LKILEPDDKNS--LRGATLRQVMQQDETMGYIPFFVSTTLGTTSC---------- 572
+ +++L+ D + + +L + + D G+IPFF+ T+GTTS
Sbjct: 251 IHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLG 310
Query: 573 -------------------------YRK-SQGIEYADSFNVNVNKWLLTAFDSSCLWVAD 606
YRK GIE ADSFN+N +KWL S LWV D
Sbjct: 311 NIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKD 370
Query: 607 RYKLTSALVVDPLYLQ---HGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYI 663
RY L AL +P YL+ + ++Y+ W I LSRRFRSLKLW V+R YG L+ +I
Sbjct: 371 RYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFI 430
Query: 664 RRHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRL--RSENNLIADQNNRKLLEDINASG 721
R H LAK FE V +DP FE+ LVCFRL + ++ NR+LL +N++G
Sbjct: 431 RDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTG 490
Query: 722 RL 723
++
Sbjct: 491 KI 492
Score = 165 bits (418), Expect = 3e-43
Identities = 93/272 (34%), Positives = 141/272 (51%), Gaps = 49/272 (18%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAIG 71
+THWQ P + AY+ S S L +ML+ + +GF+W SP+ TELE IVLDWL K +
Sbjct: 125 ITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQ 184
Query: 72 LPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSV---QNIIVLTRGQK 128
LP+ FL +T N GGGVIQ ++V+ +
Sbjct: 185 LPDHFL---------STGN-------------------GGGVIQGTGCEAVLVVVLAARD 216
Query: 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR---LKILEPDDKNS--LRGATLR 183
+I V + LL +L+ Y S + HS KA ++ + +++L+ D + + +L
Sbjct: 217 RILKKVGK-TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLE 275
Query: 184 QVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ + D G+IPFF+ T+GTTS + D L +G +AK++ +WLHVD AYAG++ ICPE
Sbjct: 276 EAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPE 335
Query: 244 FRPFMNG------------KTSFDNLHLSPIW 263
+R F++G K F N SP+W
Sbjct: 336 YRKFIDGIENADSFNMNAHKWLFANQTCSPLW 367
Score = 157 bits (399), Expect = 8e-41
Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+ +WLHVD AYAG++ ICPE+R F++GIE ADSFN+N +KWL S LWV DRY L
Sbjct: 316 YGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLI 375
Query: 391 SALVVDPLYLQ---HGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
AL +P YL+ + ++Y+ W I LSRRFRSLKLW V+R YG L+ +IR H
Sbjct: 376 DALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVN 435
Query: 448 LAKLFEGKVRRDPRFEI 464
LAK FE V +DP FE+
Sbjct: 436 LAKHFEDYVAQDPSFEV 452
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 114 bits (286), Expect = 1e-26
Identities = 64/292 (21%), Positives = 107/292 (36%), Gaps = 60/292 (20%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKL-MAYCSKEAHSCVEKAAMMAFV 528
S +E + +LAAR + + E CS+ AH EKAA +
Sbjct: 126 SGGTEANLLALLAARERWRKRALA------ESGKPGGKPNIVCSETAHFSFEKAARYLGL 179
Query: 529 RLKILE--PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT---------------- 570
L+ + P D + L + + ++ G V T GTT
Sbjct: 180 GLRRVPTVPTD-YRIDVDALEEAIDENTIGGV----VVGTAGTTDTGSIDDIEELADIAE 234
Query: 571 ---------SCY------------RKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYK 609
+ + R G+E DS V+ +K+ L + D
Sbjct: 235 EYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEA 294
Query: 610 LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 669
L L+ YL G ++ G R+ +L L+ +R G G +K + R EL
Sbjct: 295 LRRILIFADYYL--PGGGIPNFTILGSRPGRQ--ALALYANLRRLGREGYRKLLDRTLEL 350
Query: 670 AKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASG 721
A+ ++ + FE+ N+ L +V FRL+ + + +AD L E ++ G
Sbjct: 351 ARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLAD-----LSERLDRRG 397
Score = 103 bits (260), Expect = 2e-23
Identities = 54/238 (22%), Positives = 88/238 (36%), Gaps = 40/238 (16%)
Query: 10 HQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLGKA 69
++ HPR + P V A++L A+ SP+ ELE V++ L
Sbjct: 54 DELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDL 113
Query: 70 IGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN--QPQSLGGGVIQSVQNIIVLTRGQ 127
+G PE+ G T N + + + ++L + I
Sbjct: 114 LGAPEEASGTFTSG--GTEAN-----LLALLAARERWRKRALAESGKPGGKPNI------ 160
Query: 128 KKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE--PDDKNSLRGATLRQV 185
CS+ AH EKAA + L+ + P D + L +
Sbjct: 161 ------------------VCSETAHFSFEKAARYLGLGLRRVPTVPTD-YRIDVDALEEA 201
Query: 186 MQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
+ ++ G V T GTT S D++ E+ +A+E+ +WLHVD A+ G E
Sbjct: 202 IDENTIGGV----VVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLE 255
Score = 103 bits (259), Expect = 3e-23
Identities = 51/259 (19%), Positives = 84/259 (32%), Gaps = 64/259 (24%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKL-MAYCSKEAHSCVE-------- 318
S +E + +L+AR + + E CS+ AH E
Sbjct: 126 SGGTEANLLALLAARERWRKRALA------ESGKPGGKPNIVCSETAHFSFEKAARYLGL 179
Query: 319 ---------TRGHI--QSYRDAI---------------------------------FDVW 334
T I + +AI + +W
Sbjct: 180 GLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIW 239
Query: 335 LHVDGAYAGSSFICPEFR-PFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSAL 393
LHVD A+ G E + G+E DS V+ +K+ L + D L L
Sbjct: 240 LHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRIL 299
Query: 394 VVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFE 453
+ YL G ++ G R+ +L L+ +R G G +K + R ELA+
Sbjct: 300 IFADYYL--PGGGIPNFTILGSRPGRQ--ALALYANLRRLGREGYRKLLDRTLELARYLA 355
Query: 454 GKVRRDPRFEISNDVRSSA 472
++ + FE+ N+
Sbjct: 356 EELEKLGDFELVNEPELPI 374
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 51.6 bits (124), Expect = 2e-07
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 152 HSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSF 211
S AA +A + + P D G + + ++ + T TTS
Sbjct: 52 GSRYWVAAELAGAKPVPV-PVDDAGYGGLDVAIL--EELKAKPNVALIVITPNTTSGGVL 108
Query: 212 DNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPF 247
L EI +AKE+ + L VD A AG + P
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIP 144
Score = 35.8 bits (83), Expect = 0.034
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 332 DVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLL 373
+ L VD A AG + P AD +++K L
Sbjct: 122 GILLLVDAASAGGASPAPGVL---IPEGGADVVTFSLHKNLG 160
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 45.1 bits (107), Expect = 2e-04
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 148 SKEAHSCVEKAA-MMAFVR--LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204
S+ H + KAA ++ R L ++ D N + LR + P + G
Sbjct: 215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAG 274
Query: 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNG 250
TT + D L E+ +A+E HVD A+ G++ + +R + G
Sbjct: 275 TTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKG 320
Score = 34.7 bits (80), Expect = 0.26
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWL 372
HVD A+ G++ + +R + GIE ADS ++ +K L
Sbjct: 294 LGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQL 335
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 43.9 bits (104), Expect = 2e-04
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 145 AYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLG 204
Y SK+ H V K A + ++ +++ + L +++++ I F +G
Sbjct: 113 LYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIF---ANIG 169
Query: 205 TTSCCSFDNLAEIGPVAKEF---DVWLHVDGAYAGSSFICPEFRPFMNGKTSFD 255
TT + DN+ EI + K+ D ++H D A +G PF+N F
Sbjct: 170 TTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGM------ILPFVNNPPPFS 217
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 42.0 bits (99), Expect = 0.001
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 149 KEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV--MQQDETMGYIPFFVSTTLGTT 206
+ AH EKAA M + L++ ++ V + D T+G + GTT
Sbjct: 113 ESAHFSFEKAAEM--LGLELRYAPLDEDYT-VDVKDVEDLIDDNTIG-----IVGIAGTT 164
Query: 207 SCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
D++ E+ +A E ++LHVD A+ G F+ P
Sbjct: 165 ELGQIDDIEELSKIALENGIYLHVDAAFGG--FVIP 198
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 39.1 bits (92), Expect = 0.009
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 204 GTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFD 255
GTT D + E+ +A E ++LHVD A+ G F+ PF++ +FD
Sbjct: 160 GTTELGQVDPIPELSKIALENGIFLHVDAAFGG--FVI----PFLDDPPNFD 205
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 33.0 bits (76), Expect = 0.72
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 150 EAHSCVEKAAMMAF---VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPF-FVSTTLGT 205
E H+ + +A ++++ D L L +++ + VS GT
Sbjct: 97 EHHANLVPWQELAKRTGATVRVIPVDPNGLLDLDALEKLL--TPRTKLVAITHVSNVTGT 154
Query: 206 TSCCSFDNLAEIGPVAKEFDVWLHVDGA 233
+ + EIG +A E+ + VD A
Sbjct: 155 -----VNPVEEIGKLAHEYGALVVVDAA 177
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 32.6 bits (75), Expect = 0.85
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 146 YCSKEAHSCVEKAAMMAF---VRLKILEPDDKNSLRGATLRQVMQQDETMGYIPF-FVST 201
C + AH ++ A + L + L L ++ + + P +S
Sbjct: 75 ICGEPAHIYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISL 134
Query: 202 TLGTTSCC----SFDNLAEIGPVAKEFDVWLHVDGA 233
S S + L EI +A+E + LH+DGA
Sbjct: 135 ENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGA 170
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 32.2 bits (74), Expect = 1.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 210 SFDNLAEIGPVAKEFDVWLHVDGA 233
D L I V KE + LH+DGA
Sbjct: 148 PLDELEAISAVCKEHGLPLHMDGA 171
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 31.5 bits (72), Expect = 1.8
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 146 YCSKEAHSCVEKA---AMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIP---FFV 199
C + AH ++A ++ V+L + ++ L L ++ + + + P +
Sbjct: 75 ICHETAHIYTDEAGAPEFLSGVKLLPVPGENG-KLTPEDLEAAIRPRDDIHFPPPSLVSL 133
Query: 200 STTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGA 233
T + D L I +AKE + LH+DGA
Sbjct: 134 ENTTEGGTVYPLDELKAISALAKENGLPLHLDGA 167
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 31.2 bits (71), Expect = 2.9
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 147 CSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI---PFFVSTTL 203
C EK A V L+ + P D R V+ ++ + + V L
Sbjct: 143 MGSNVQVCWEKFARYFDVELREV-PMDPG-------RYVIDPEQVVEAVDENTIGVVCIL 194
Query: 204 GTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAG--SSFICPEFR 245
GTT ++++ + E+ D+ +HVD A G + F+ P+
Sbjct: 195 GTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLE 244
>gnl|CDD|220380 pfam09751, Es2, Nuclear protein Es2. This entry is of a family of
proteins of approximately 500 residues with alternating
regions of low complexity and conservation where the
domain similarities are strong. Apart from a predicted
coiled-coil domain, no other known functional domains
have been characterized. The protein appears to be
expressed in the nucleus and particularly highly in the
pons sub-region of the brain. The protein is clearly
necessary for normal development of the nervous system.
Length = 390
Score = 30.9 bits (70), Expect = 3.1
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 816 PASFELQERKRKDDLAYKRSFFVRMVSDPKIYNPKIAVATPTSRRPTCLASS 867
SF++ E R++ LA+K V + K K A + R ++
Sbjct: 329 GPSFKIPEPSRREKLAHKL---VEKAARAK-RREKAKGALRRNLRSPTSPTT 376
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 30.2 bits (69), Expect = 4.0
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 469 RSSASECIFVCMLAARAQAISKLKKIHPFVD 499
R V ++AA + I ++K HP V+
Sbjct: 150 RGGPKNIKVVSLVAAP-EGIKAVEKAHPDVE 179
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Ornithine and Diaminopimelate
Decarboxylases, and Related Enzymes. This family
includes eukaryotic ornithine decarboxylase (ODC, EC
4.1.1.17), diaminopimelate decarboxylase (DapDC, EC
4.1.1.20), plant and prokaryotic biosynthetic arginine
decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine
decarboxylase (CANSDC), and ODC-like enzymes from
diverse bacterial species. These proteins are fold type
III PLP-dependent enzymes that catalyze essential steps
in the biosynthesis of polyamine and lysine. ODC and
ADC participate in alternative pathways of the
biosynthesis of putrescine, which is the precursor of
aliphatic polyamines in many organisms. ODC catalyzes
the direct synthesis of putrescine from L-ornithine,
while ADC converts L-arginine to agmatine, which is
hydrolysed to putrescine by agmatinase in a pathway that
exists only in plants and bacteria. DapDC converts
meso-2,6-diaminoheptanedioate to L-lysine, which is the
final step of lysine biosynthesis. CANSDC catalyzes the
decarboxylation of carboxynorspermidine, which is the
last step in the synthesis of norspermidine. The
PLP-dependent decarboxylases in this family contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. They exist as homodimers with active
sites that lie at the interface between the TIM barrel
domain of one subunit and the beta-sandwich domain of
the other subunit. Prokaryotic ornithine, lysine and
biodegradative arginine decarboxylases are fold type I
PLP-dependent enzymes and are not included in this
family.
Length = 368
Score = 30.3 bits (69), Expect = 4.5
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 18/76 (23%)
Query: 6 HFLSHQVTHWQHPR--FHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVL 63
F HP A P P+ LA P C + I
Sbjct: 285 SFRPALAYDAYHPITPLKAPGPDEPLVPATLAG----------------PLCDSGDVIGR 328
Query: 64 DWLGKAIGLPEKFLMY 79
D L + + + +
Sbjct: 329 DRLLPELEVGDLLVFE 344
>gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model
describes the spoVD subfamily of homologs of the cell
division protein FtsI, a penicillin binding protein.
This subfamily is restricted to Bacillus subtilis and
related Gram-positive species with known or suspected
endospore formation capability. In these species, the
functional equivalent of FtsI is desginated PBP-2B, a
paralog of spoVD [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 636
Score = 30.6 bits (69), Expect = 4.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 169 LEPDDKNSLRGATLRQVMQQDETMGYIPF--FVSTTLGTT 206
+E D +R L V ++ Y P F+S LG T
Sbjct: 122 IEKDKAEKVRNLKLNGVSVSPDSKRYYPNGDFLSHVLGFT 161
Score = 30.6 bits (69), Expect = 4.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 533 LEPDDKNSLRGATLRQVMQQDETMGYIPF--FVSTTLGTT 570
+E D +R L V ++ Y P F+S LG T
Sbjct: 122 IEKDKAEKVRNLKLNGVSVSPDSKRYYPNGDFLSHVLGFT 161
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 30.2 bits (69), Expect = 5.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 LAEIGPVAKEFDVWLHVD 231
+AEIG + KE + HVD
Sbjct: 160 IAEIGEICKERGILFHVD 177
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 29.9 bits (67), Expect = 6.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 203 LGTTSCC---SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPE 243
L TTSC S D + EI + E+DV V+GAY S
Sbjct: 160 LSTTSCFAPRSPDRVKEIAKICAEYDVPHLVNGAYGIQSEKYIH 203
>gnl|CDD|147730 pfam05735, TSP_C, Thrombospondin C-terminal region. This region is
found at the C-terminus of thrombospondin and related
proteins.
Length = 201
Score = 28.9 bits (65), Expect = 7.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 682 RFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPASQEQ 732
R+++ + +G + R+ N+L+AD N + + GRL + SQE
Sbjct: 138 RWQLHHRPSIGYIRVRMYEGNHLVADSGN--IYDSTLRGGRLGVFCFSQEM 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.421
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,768,851
Number of extensions: 4527018
Number of successful extensions: 3144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3115
Number of HSP's successfully gapped: 54
Length of query: 891
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 785
Effective length of database: 6,236,078
Effective search space: 4895321230
Effective search space used: 4895321230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.2 bits)