RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy852
(891 letters)
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 325 bits (835), Expect = e-102
Identities = 122/297 (41%), Positives = 171/297 (57%), Gaps = 42/297 (14%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S+ SE + +LAAR I ++K P DE L ++L+AY S +AHS VEKA +++ V+
Sbjct: 152 STVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVK 211
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
+K L DD SLRG L++ +++D+ G +P FV TLGTT
Sbjct: 212 MKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREG 271
Query: 573 ------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
+R +GIEYADSF N +KW++ FD + WV D+YKL
Sbjct: 272 LWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQT 331
Query: 614 LVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
V+P+YL+H + G A D+ HW IPLSRRFRS+KLWFVIR++G+ LQ ++R E+AK
Sbjct: 332 FSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKY 391
Query: 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
FE VR DP FEI LGLV FRL+ N+L +L++I +GRL ++PA+
Sbjct: 392 FESLVRNDPSFEIPAKRHLGLVVFRLKGPNSL-----TENVLKEIAKAGRLFLIPAT 443
Score = 288 bits (738), Expect = 4e-88
Identities = 109/260 (41%), Positives = 152/260 (58%), Gaps = 35/260 (13%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + V HWQ P HAY+P+ S+PS+L DML+DAI C+GF+WA+SP+CTELE
Sbjct: 62 FGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEM 121
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNI 120
V+DWL K +GLPE FL + P + GGGV+QS +
Sbjct: 122 NVMDWLAKMLGLPEHFLHHHPSSQ-------------------------GGGVLQSTVSE 156
Query: 121 IVLT----------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170
L K P DE L ++L+AY S +AHS VEKA +++ V++K L
Sbjct: 157 STLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLP 216
Query: 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230
DD SLRG L++ +++D+ G +P FV TLGTT C+FD L+E+GP+ +WLH+
Sbjct: 217 VDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHI 276
Query: 231 DGAYAGSSFICPEFRPFMNG 250
D AYAG++F+CPEFR F+ G
Sbjct: 277 DAAYAGTAFLCPEFRGFLKG 296
Score = 228 bits (584), Expect = 2e-66
Identities = 76/142 (53%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+WLH+D AYAG++F+CPEFR F+ GIEYADSF N +KW++ FD + WV D+YKL
Sbjct: 270 EGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQ 329
Query: 391 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
V+P+YL+H + G A D+ HW IPLSRRFRS+KLWFVIR++G+ LQ ++R E+A
Sbjct: 330 QTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMA 389
Query: 450 KLFEGKVRRDPRFEISNDVRSS 471
K FE VR DP FEI
Sbjct: 390 KYFESLVRNDPSFEIPAKRHLG 411
Score = 63.2 bits (154), Expect = 2e-10
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
S+ SE + +L+AR I ++K P DE L ++L+AY S +AHS VE
Sbjct: 152 STVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202
Score = 47.4 bits (113), Expect = 2e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASF 819
+R++ + LGLV FRL+ N++ +L++I +GRL ++PA+
Sbjct: 395 LVRNDPSFEIPAKRHLGLVVFRLKGPNSL-----TENVLKEIAKAGRLFLIPATI 444
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 321 bits (825), Expect = e-100
Identities = 129/299 (43%), Positives = 179/299 (59%), Gaps = 44/299 (14%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
SASE V +LAAR + + +L+ P + +G +L KL+AY S +AHS VE+A ++ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
LK + D K ++R + L++ +++D+ G IPFFV TLGTTSC
Sbjct: 206 LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265
Query: 573 ------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
+R G+E+ADSFN N +KWLL FD S +WV R LT A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA 325
Query: 614 LVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
+DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +L+
Sbjct: 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPAS 729
FE V +DPRFE+ +V LGLVCFRL+ + L N LLE IN++ ++H+VP
Sbjct: 386 HEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVPCR 439
Score = 283 bits (727), Expect = 1e-86
Identities = 120/260 (46%), Positives = 158/260 (60%), Gaps = 36/260 (13%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + + VTHW P F AYFP+ +SYP++LADML AIGCIGFSWAASP+CTELET
Sbjct: 57 LQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELET 116
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNI 120
+++DWLGK + LPE FL GGGVIQ +
Sbjct: 117 VMMDWLGKMLQLPEAFLAGEAGE--------------------------GGGVIQGSASE 150
Query: 121 IVLT----------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170
L R + P + +G +L KL+AY S +AHS VE+A ++ V+LK +
Sbjct: 151 ATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIP 210
Query: 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230
D K ++R + L++ +++D+ G IPFFV TLGTTSCCSFDNL E+GP+ E D+WLHV
Sbjct: 211 SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV 270
Query: 231 DGAYAGSSFICPEFRPFMNG 250
D AYAGS+FICPEFR +NG
Sbjct: 271 DAAYAGSAFICPEFRHLLNG 290
Score = 226 bits (578), Expect = 2e-65
Identities = 84/144 (58%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
D+WLHVD AYAGS+FICPEFR +NG+E+ADSFN N +KWLL FD S +WV R LT
Sbjct: 264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT 323
Query: 391 SALVVDPLYLQHGHEGA---IDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
A +DP+YL+H H+G+ DYRHW +PL RRFRSLK+WFV R YG+ GLQ YIR+H +
Sbjct: 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQ 383
Query: 448 LAKLFEGKVRRDPRFEISNDVRSS 471
L+ FE V +DPRFE+ +V
Sbjct: 384 LSHEFEAFVLQDPRFEVCAEVTLG 407
Score = 62.1 bits (151), Expect = 4e-10
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
SASE V +L+AR + + +L+ P + +G +L KL+AY S +AHS VE
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE 196
Score = 47.4 bits (113), Expect = 1e-05
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASF 819
+ + + LGLVCFRL+ + + N LLE IN++ ++H+VP
Sbjct: 391 FVLQDPRFEVCAEVTLGLVCFRLKGSDGL-----NEALLERINSARKIHLVPCRL 440
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 320 bits (821), Expect = e-100
Identities = 123/296 (41%), Positives = 171/296 (57%), Gaps = 43/296 (14%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE+A ++ V+
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK 205
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC----------------- 572
L+ + + + +RGA L + ++QD G IPF+ TLGTT+
Sbjct: 206 LRSV-QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHN 264
Query: 573 ------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
YR +GIE ADSFN N +KW+L FD S +W+ D + +A
Sbjct: 265 LWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNA 324
Query: 614 LVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC AK
Sbjct: 325 FNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQ 384
Query: 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
F D RFE++ ++ +GLVCFRL+ N N LL+ IN G +H+VPA
Sbjct: 385 FGDLCVADSRFELAAEINMGLVCFRLKGSNER-----NEALLKRINGRGHIHLVPA 435
Score = 278 bits (712), Expect = 2e-84
Identities = 111/260 (42%), Positives = 153/260 (58%), Gaps = 37/260 (14%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
M + + VTHW P+FHAYFP+ NSYP+++ADMLS AI CIGF+W ASP+CTELE
Sbjct: 57 MQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEV 116
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNI 120
+++DWLGK + LP +FL GGGVIQ +
Sbjct: 117 VMMDWLGKMLELPAEFLACSGGK--------------------------GGGVIQGTASE 150
Query: 121 IVLT----------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 170
L + K++HP DE +L KL+ YCS +AHS VE+A ++ V+L+ +
Sbjct: 151 STLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSV- 209
Query: 171 PDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHV 230
+ + +RGA L + ++QD G IPF+ TLGTT+ C+FD L E GPV + ++W+HV
Sbjct: 210 QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHV 269
Query: 231 DGAYAGSSFICPEFRPFMNG 250
D AYAGS+FICPE+R M G
Sbjct: 270 DAAYAGSAFICPEYRHLMKG 289
Score = 230 bits (589), Expect = 4e-67
Identities = 78/142 (54%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
++W+HVD AYAGS+FICPE+R M GIE ADSFN N +KW+L FD S +W+ D +
Sbjct: 263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVV 322
Query: 391 SALVVDPLYLQHGHEG-AIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 449
+A VDPLYL+H +G A DYRHW IPL RRFR+LKLWFV+R YG+ LQ +IRRHC A
Sbjct: 323 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFA 382
Query: 450 KLFEGKVRRDPRFEISNDVRSS 471
K F D RFE++ ++
Sbjct: 383 KQFGDLCVADSRFELAAEINMG 404
Score = 60.5 bits (147), Expect = 1e-09
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
+ASE V +L A+A+ + ++K++HP DE +L KL+ YCS +AHS VE
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVE 196
Score = 46.6 bits (111), Expect = 3e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPA 817
+++ + +GLVCFRL+ N N LL+ IN G +H+VPA
Sbjct: 388 LCVADSRFELAAEINMGLVCFRLKGSNER-----NEALLKRINGRGHIHLVPA 435
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 286 bits (735), Expect = 2e-87
Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 41/298 (13%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPF-VDEGVLLSKLMAYCSKEAHSCVEKAAMMA-- 526
S ++ + ++ AR KL + KL CSK++H V+K+A
Sbjct: 165 SGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL 224
Query: 527 -FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC------------- 572
+ ++ + ++ L +V+ Q + G IPF + T GTT
Sbjct: 225 GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA 284
Query: 573 ---------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
++ + +G+E A S +V+ +K L V D+
Sbjct: 285 VKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF 344
Query: 611 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELA 670
L+ YL H+ + I ++RF +LK++ ++ G L
Sbjct: 345 -KFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQT 403
Query: 671 KLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVPA 728
+R + +FE+ + L V FR E + D+ N+ L + G +
Sbjct: 404 LEVADMIRTNDQFELLAEPSLSTVLFRATHETADL-DELNKALRLEALTRGIAVLGET 460
Score = 254 bits (652), Expect = 1e-75
Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 49/264 (18%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + ++ QHP A+ + P+V A+ + A+ SW + S T +E
Sbjct: 84 IDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQ 143
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SV 117
V++WL L EK G+ +
Sbjct: 144 KVVNWLCDKYDLSEK----------------------------------ADGIFTSGGTQ 169
Query: 118 QNIIVLT--------RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA---FVRL 166
N + L + + KL CSK++H V+K+A +
Sbjct: 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAV 229
Query: 167 KILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDV 226
++ + ++ L +V+ Q + G IPF + T GTT + D+L I +A + D+
Sbjct: 230 MTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM 289
Query: 227 WLHVDGAYAGSSFICPEFRPFMNG 250
W+HVDGAY G + I + + G
Sbjct: 290 WMHVDGAYGG-ALILSSHKSRLKG 312
Score = 214 bits (548), Expect = 4e-61
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
D+W+HVDGAY G+ I + + G+E A S +V+ +K L V D+
Sbjct: 287 HDMWMHVDGAYGGA-LILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF- 344
Query: 391 SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 450
L+ YL H+ + I ++RF +LK++ ++ G L
Sbjct: 345 KFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTL 404
Query: 451 LFEGKVRRDPRFEISNDVRSS 471
+R + +FE+ + S
Sbjct: 405 EVADMIRTNDQFELLAEPSLS 425
Score = 50.4 bits (121), Expect = 2e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPF-VDEGVLLSKLMAYCSKEAHSCVE 318
S ++ + ++ AR KL + KL CSK++H V+
Sbjct: 165 SGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ 216
Score = 43.1 bits (102), Expect = 3e-04
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPA 817
+R+ + L V FR E + D+ N+ L + G +
Sbjct: 409 MIRTNDQFELLAEPSLSTVLFRATHETADL-DELNKALRLEALTRGIAVLGET 460
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 281 bits (722), Expect = 1e-85
Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 59/322 (18%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMA--- 526
+ ++AAR + ++K + KL+ + S+++H ++KA
Sbjct: 158 PGGAISNMYSIMAARYKYFPEVKTKGMAA-----VPKLVLFTSEQSHYSIKKAGAALGFG 212
Query: 527 FVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-------------- 572
+ +++ +++ + A + + + GY+PF+V+ T GTT
Sbjct: 213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE 272
Query: 573 ---------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 610
+R K GIE A+S N +K + S + V ++ L
Sbjct: 273 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGIL 332
Query: 611 TSALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667
+ YL ++ + D I R K W + + G G + I +
Sbjct: 333 QGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCL 392
Query: 668 ELAKLFEGKVRRDPRFEI--SNDVRLGLVCFRLR----------SENNLIADQNNRKLLE 715
ELA+ K++ FE+ + + VCF + + K+
Sbjct: 393 ELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKA 452
Query: 716 DINASGRLHMVPASQEQNDEVF 737
+ SG + Q F
Sbjct: 453 LMMESGTTMVGYQPQGDKANFF 474
Score = 266 bits (683), Expect = 5e-80
Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 44/252 (17%)
Query: 8 LSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLDWLG 67
L + V HPRF +G + + L+ F++ +P +E I L +
Sbjct: 84 LKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMR 142
Query: 68 KAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SVQNIIVLT 124
+ +G K G G+ ++ N+ +
Sbjct: 143 EIVGWSSKD---------------------------------GDGIFSPGGAISNMYSIM 169
Query: 125 --RGQKKIHPFVDEGV-LLSKLMAYCSKEAHSCVEKAAMMA---FVRLKILEPDDKNSLR 178
R K +G+ + KL+ + S+++H ++KA + +++ +++ +
Sbjct: 170 AAR-YKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKII 228
Query: 179 GATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSS 238
A + + + GY+PF+V+ T GTT +FD + EI + +++++WLHVD A+ G
Sbjct: 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL 288
Query: 239 FICPEFRPFMNG 250
+ + R +NG
Sbjct: 289 LMSRKHRHKLNG 300
Score = 223 bits (571), Expect = 3e-64
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+++WLHVD A+ G + + R +NGIE A+S N +K + S + V ++ L
Sbjct: 274 YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQ 333
Query: 391 SALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCE 447
+ YL ++ + D I R K W + + G G + I + E
Sbjct: 334 GCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 393
Query: 448 LAKLFEGKVRRDPRFEISNDVRSSASECIFVC 479
LA+ K++ FE+ V + E VC
Sbjct: 394 LAEYLYAKIKNREEFEM---VFNGEPEHTNVC 422
Score = 52.4 bits (126), Expect = 5e-07
Identities = 7/51 (13%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
+ +++AR + ++K + KL+ + S+++H ++
Sbjct: 158 PGGAISNMYSIMAARYKYFPEVKTKGMAA-----VPKLVLFTSEQSHYSIK 203
Score = 35.4 bits (82), Expect = 0.094
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 10/56 (17%)
Query: 772 LIADHPLQLGLVCFRLR----------SENNVIADQNNRKLLEDINASGRLHMVPA 817
++ + + VCF + + K+ + SG +
Sbjct: 410 MVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQ 465
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 271 bits (694), Expect = 2e-81
Identities = 63/321 (19%), Positives = 106/321 (33%), Gaps = 58/321 (18%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFV- 528
S + AR Q K+ L L + SKE H ++K A +
Sbjct: 172 PGGSISNMYAVNLARYQRYPDCKQRGLRT-----LPPLALFTSKECHYSIQKGAAFLGLG 226
Query: 529 --RLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSC-------------- 572
+++++ D++ + L + + E G +PF VS T GTT
Sbjct: 227 TDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQ 286
Query: 573 ---------------------YR-KSQGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YK 609
+R GI+ ADS N +K L S L + D
Sbjct: 287 RHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNL 346
Query: 610 LTSALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRH 666
L YL ++ A+D + RR LKLW + + G GL++ I +
Sbjct: 347 LKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQA 406
Query: 667 CELAKLFEGKVRRDPRFEISNDVRLGLVCFRLR----------SENNLIADQNNRKLLED 716
LA+ ++++ FE+ + VCF + + + L E
Sbjct: 407 FVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKER 466
Query: 717 INASGRLHMVPASQEQNDEVF 737
+ G + + F
Sbjct: 467 MVKEGSMMIGYQPHGTRGNFF 487
Score = 259 bits (664), Expect = 3e-77
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 44/258 (17%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTELET 60
+ + + V HPRF SG ++ ++++++ +++ +P +E
Sbjct: 93 LERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEE 151
Query: 61 IVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQ---SV 117
VL L +G G G+ S+
Sbjct: 152 EVLRKLRALVGWSS-----------------------------------GDGIFCPGGSI 176
Query: 118 QNIIVLTRGQKKIHPFVDEGVL--LSKLMAYCSKEAHSCVEKAAMMAFV---RLKILEPD 172
N+ + + + +P + L L L + SKE H ++K A + +++++ D
Sbjct: 177 SNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD 236
Query: 173 DKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDG 232
++ + L + + E G +PF VS T GTT +FD L I V + +WLHVD
Sbjct: 237 ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA 296
Query: 233 AYAGSSFICPEFRPFMNG 250
A+ GS + R ++G
Sbjct: 297 AWGGSVLLSQTHRHLLDG 314
Score = 213 bits (543), Expect = 3e-60
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADR-YKL 389
+WLHVD A+ GS + R ++GI+ ADS N +K L S L + D L
Sbjct: 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLL 347
Query: 390 TSALVVDPLYLQH---GHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 446
YL ++ A+D + RR LKLW + + G GL++ I +
Sbjct: 348 KRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAF 407
Query: 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIFVC 479
LA+ ++++ FE+ + E + VC
Sbjct: 408 VLARYLVEEMKKREGFELVMEP-----EFVNVC 435
Score = 50.1 bits (120), Expect = 2e-06
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 268 SSASECIFVCMLSARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVE 318
S + AR Q K+ L L + SKE H ++
Sbjct: 172 PGGSISNMYAVNLARYQRYPDCKQRGLRT-----LPPLALFTSKECHYSIQ 217
Score = 33.1 bits (76), Expect = 0.44
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 10/63 (15%)
Query: 765 RLRSENNLIADHPLQLGLVCFRLR----------SENNVIADQNNRKLLEDINASGRLHM 814
++ + VCF + + + L E + G + +
Sbjct: 416 EMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMI 475
Query: 815 VPA 817
Sbjct: 476 GYQ 478
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 75.7 bits (186), Expect = 3e-14
Identities = 41/270 (15%), Positives = 71/270 (26%), Gaps = 58/270 (21%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S +E + + M R A + P AH+ +KAA ++
Sbjct: 167 SGGTESLLLAMKTYRDWARATKGITAPEA-----------VVPVSAHAAFDKAAQYFGIK 215
Query: 530 LKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT------------------- 570
L D A +R+ + + T+ G
Sbjct: 216 LVRTPLDADYRADVAAMREAITPN-TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHV 274
Query: 571 -SCY----------------RKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTSA 613
+C +E S + + +K+ A +S + L
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334
Query: 614 LVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
+ + Y SR S W + + G G RR + A
Sbjct: 335 YFIAADWP------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADR 388
Query: 673 FEGKVRRDPRFEISNDVRLGLVCFRLRSEN 702
+ VR P +I D L + S+
Sbjct: 389 LKAGVRAIPSLKILGDP---LWVIAVASDE 415
Score = 72.6 bits (178), Expect = 3e-13
Identities = 30/145 (20%), Positives = 45/145 (31%), Gaps = 16/145 (11%)
Query: 332 DVWLHVDGAYAGSSFICP-------EFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVA 384
+ HVD G FI P PF +E S + + +K+ A +S +
Sbjct: 269 GIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYR 326
Query: 385 DRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIR 443
L + + Y SR S W + + G G R
Sbjct: 327 RPDLLHYQYFIAADWP------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATR 380
Query: 444 RHCELAKLFEGKVRRDPRFEISNDV 468
R + A + VR P +I D
Sbjct: 381 RILQAADRLKAGVRAIPSLKILGDP 405
Score = 66.1 bits (161), Expect = 2e-11
Identities = 37/256 (14%), Positives = 71/256 (27%), Gaps = 45/256 (17%)
Query: 3 LLFHFLSHQVTHWQHPRFHAYFPSGNSYP-SVLADMLSDAIGCIGFSWAASPSCTELETI 61
+ + + W+ G+ + + L ++ + PS + E
Sbjct: 84 EIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAE 143
Query: 62 VLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNII 121
V+ +G + +T GG + ++
Sbjct: 144 VVAMTAHMLGGDAA-----------------GGTVCGTVTS--------GG---TESLLL 175
Query: 122 -VLT-RGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRG 179
+ T R + + AH+ +KAA ++L D
Sbjct: 176 AMKTYRDWARATKGITAPEA------VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADV 229
Query: 180 ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSF 239
A +R+ + + V+ + D + EI +A E + HVD G F
Sbjct: 230 AAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG--F 281
Query: 240 ICPEFRPFMNGKTSFD 255
I P FD
Sbjct: 282 ILPWAERLGYPVPPFD 297
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 75.3 bits (185), Expect = 3e-14
Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 54/271 (19%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
S +E + + L+A+ A+ P + AH+ +KAA ++
Sbjct: 133 SGGTESLLLACLSAKMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYFGMK 181
Query: 530 LKILEPDDKN-SLRGATLRQVMQQDETMGY-------------------------IPFFV 563
L+ +E D + +++ + ++ + +P V
Sbjct: 182 LRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHV 241
Query: 564 STTLGT-----------TSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLTS 612
+ LG+ + + S + + +K+ SS + +
Sbjct: 242 DSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMH 301
Query: 613 ALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKL 672
V+P + G + + W + G +G + + A
Sbjct: 302 QYYVNPAWT-----GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMK 356
Query: 673 FEGKVRRD-PRFEISNDVRLGLVCFRLRSEN 702
F+ ++ + P +I + R ++ F ++ N
Sbjct: 357 FKKYIQENIPDLDIMGNPRYSVISFSSKTLN 387
Score = 69.5 bits (170), Expect = 2e-12
Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 16/146 (10%)
Query: 331 FDVWLHVDGAYAGSSFICP--------EFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLW 382
+ + LHVD FI + S + + +K+ SS +
Sbjct: 235 YKLPLHVDSCLGS--FIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIM 292
Query: 383 VADRYKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYI 442
+ V+P + G + + W + G +G +
Sbjct: 293 YRNSDLRMHQYYVNPAWT-----GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESC 347
Query: 443 RRHCELAKLFEGKVRRD-PRFEISND 467
+ A F+ ++ + P +I +
Sbjct: 348 QEIVGAAMKFKKYIQENIPDLDIMGN 373
Score = 58.4 bits (141), Expect = 6e-09
Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 48/235 (20%)
Query: 12 VTHWQHPRFHAYFPSGNSYPSVLA-DMLSDAIGCIGFSWAASPSCTELETIVLDWLGKAI 70
T W+ + G L P+ ++E+ V+ + +
Sbjct: 61 HTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMF 120
Query: 71 GLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQSLGGGVIQSVQNIIVLT--RGQK 128
P G TT GG + ++ +
Sbjct: 121 NAPS------DTGCGTTT---------------------SGG---TESLLLACLSAKMYA 150
Query: 129 KIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQ 187
H + E + AH+ +KAA ++L+ +E D + +++ +
Sbjct: 151 LHHRGITEPEI------IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFIN 204
Query: 188 QDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
++ + + D++ +G +A+++ + LHVD FI
Sbjct: 205 KN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGS--FIVS 251
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 72.8 bits (178), Expect = 2e-13
Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEP---DDKNSLRGATLRQVMQQDETMGYIPFFVSTT 202
+H KA + ++++E D+ + + ++++ +G P +ST
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTL 239
Query: 203 LGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSF 254
+ D++ EI + + +D+ ++GAYA + + +
Sbjct: 240 -TFFPPRNSDDIVEIAKICENYDIPHIINGAYAI---QNNYYLEKLKKAFKY 287
Score = 65.1 bits (158), Expect = 5e-11
Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 23/130 (17%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGI--EYADSFNVNVNKWLLTAFDSSCLWVADRYK 388
+D+ ++GAYA + + D+ + +K LLT ++ D
Sbjct: 260 YDIPHIINGAYAI---QNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEF 316
Query: 389 LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCEL 448
+ + + G + + + + G + ++
Sbjct: 317 IK--------EISLSYPG-------RASATP---VVNTLVSLLSMGSKNYLELVKNQKNS 358
Query: 449 AKLFEGKVRR 458
KL + +
Sbjct: 359 KKLLDELLND 368
Score = 62.4 bits (151), Expect = 3e-10
Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 74/243 (30%)
Query: 475 CIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILE 534
I +C+ AAR + S + +H KA + ++++E
Sbjct: 162 SISLCLSAARKKYGSNV-----------------VIYPYASHKSPIKAVSFVGMNMRLVE 204
Query: 535 P---DDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTTS-------------------- 571
D+ + + ++++ +G P +ST
Sbjct: 205 TVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDDIVEIAKICENYDIP 263
Query: 572 ----------CYRKSQGIEYA-----DSFNVNVNKWLLTAFDSSCLWVADRYKLTSALVV 616
+ ++ A D+ + +K LLT ++ D +
Sbjct: 264 HIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK----- 318
Query: 617 DPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGK 676
+ + G + + + + G + ++ KL +
Sbjct: 319 ---EISLSYPG-------RASATP---VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 365
Query: 677 VRR 679
+
Sbjct: 366 LND 368
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 67.4 bits (165), Expect = 6e-12
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGT 205
AH EK M + + ++ ++ ++ + G I GT
Sbjct: 127 IVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIG-----IAGT 181
Query: 206 TSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICP 242
T + DN+ E+ +AKE ++++HVD A+ G + P
Sbjct: 182 TELGTIDNIEELSKIAKENNIYIHVDAAFGG--LVIP 216
Score = 48.9 bits (117), Expect = 5e-06
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 28/152 (18%)
Query: 331 FDVWLHVDGAYAGSSFICP--EFRPFMNGIEY-------ADSFNVNVNKWLLTAFDSSCL 381
++++HVD A+ G + P + + G+ Y DS ++ +K S +
Sbjct: 200 NNIYIHVDAAFGG--LVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI 257
Query: 382 WVADRYKLTSALVVDPLYL----QHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLS 436
D L VD YL Q G +R F + V+R G
Sbjct: 258 LFKDI-GYKRYLDVDAPYLTETRQATILG-----------TRVGFGGACTYAVLRYLGRE 305
Query: 437 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDV 468
G +K + E K++ + + +
Sbjct: 306 GQRKIVNECMENTLYLYKKLKENNFKPVIEPI 337
Score = 48.9 bits (117), Expect = 5e-06
Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 72/280 (25%)
Query: 473 SECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKI 532
+E + + + K +K + + AH EK M +
Sbjct: 96 TEANLMALRCIKNIWREKRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIY 149
Query: 533 LEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT---------------------- 570
+ ++ ++ ++ + G I GTT
Sbjct: 150 APIKEDYTIDEKFVKDAVEDYDVDGIIG-----IAGTTELGTIDNIEELSKIAKENNIYI 204
Query: 571 ---SCY-----------RKSQGIEY-------ADSFNVNVNKWLLTAFDSSCLWVADRYK 609
+ + K +G+ Y DS ++ +K S + D
Sbjct: 205 HVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDI-G 263
Query: 610 LTSALVVDPLYL----QHGHEGAIDYRHWGIPLSR-RFRSLKLWFVIRTYGLSGLQKYIR 664
L VD YL Q G +R F + V+R G G +K +
Sbjct: 264 YKRYLDVDAPYLTETRQATILG-----------TRVGFGGACTYAVLRYLGREGQRKIVN 312
Query: 665 RHCELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNL 704
E K++ + + + L +V +
Sbjct: 313 ECMENTLYLYKKLKENNFKPVIEPI-LNIVAIEDEDYKEV 351
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 60.1 bits (145), Expect = 2e-09
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 56/276 (20%)
Query: 470 SSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVR 529
+SE I + LA + + +K K VD+ + C EK A V
Sbjct: 124 VGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVE 177
Query: 530 LKILEPDDKNSLRGATLRQVMQQ--DETMGYIPFFVSTTLGTT----------SCYRKSQ 577
LK ++ + +Q + + T+ ST G K
Sbjct: 178 LKEVKLSEGY--YVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKET 235
Query: 578 G----------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADRYK 609
G + S NV+ +K+ L + ++
Sbjct: 236 GWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKED 295
Query: 610 LTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCE 668
L L+ YL GA D + + S+ + + ++ + G G + + E
Sbjct: 296 LPEELIFHINYL-----GA-DQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRE 349
Query: 669 LAKLFEGKVRRDPRFE-ISNDVRLGLVCFRLRSENN 703
+ + + RF +S D + LV F L+ +
Sbjct: 350 NMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC 385
Score = 58.5 bits (141), Expect = 6e-09
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 8/139 (5%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMN-GIEYADSFNVNVNKWLLTAFDSSCLWVADRYKL 389
+D +HVD A G + + S NV+ +K+ L + ++ L
Sbjct: 237 WDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296
Query: 390 TSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHCEL 448
L+ YL GA D + + S+ + + ++ + G G + + E
Sbjct: 297 PEELIFHINYL-----GA-DQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCREN 350
Query: 449 AKLFEGKVRRDPRFEISND 467
+ + + RF I +
Sbjct: 351 MIVLREGLEKTERFNIVSK 369
Score = 50.4 bits (120), Expect = 2e-06
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 23/119 (19%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI---PFFVSTT 202
C EK A V LK ++ + VM + + + V+
Sbjct: 158 VTGANVQVCWEKFARYFEVELKEVKLSEG--------YYVMDPQQAVDMVDENTICVAAI 209
Query: 203 LGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICPEFRPFMNGKTSFD 255
LG+T F+++ + + E D +HVD A G PF+ + +D
Sbjct: 210 LGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGF------IAPFLYPELEWD 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-08
Identities = 102/709 (14%), Positives = 197/709 (27%), Gaps = 250/709 (35%)
Query: 168 ILEPDDKNSLRG--ATLRQVMQQDETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFD 225
I+ D + TL +Q+E + FV L ++ L P+ E
Sbjct: 55 IMSKDAVSGTLRLFWTLLS--KQEEMVQK---FVEEVLRI----NYKFLMS--PIKTE-- 101
Query: 226 VWLHVDGAYAGSSFICPEFR-PFMNGKTSFDNLHLS---PIW------YE-RPSSASECI 274
+ +I E R N F ++S P E RP+ +
Sbjct: 102 ---QRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---V 153
Query: 275 FVC-ML----SARAQAISKLKKIHPFVDEGVL-LSKLMAYCSKEAHS-------CVETRG 321
+ +L + A + K+ +D + L+ + C+ +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDP 211
Query: 322 HIQSYRDAIFDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNV--NV-NKWLLTAFDS 378
+ S D ++ L + A E R + Y + V NV N AF+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 379 SCLWVADRYKLTS--ALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLS 436
SC + LT+ V D L ++D+ L+ L
Sbjct: 265 SC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPD-EVKSL---------- 306
Query: 437 GLQKYIRRHCELAKLFEGKVRRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHP 496
L KY+ C L PR + +P
Sbjct: 307 -LLKYL--DCRPQDL--------PR------------------------EV----LTTNP 327
Query: 497 FVDEGVLLSKLMAYCSKEA-------HSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQV 549
LS + H +K + L +LEP + R++
Sbjct: 328 RR-----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--------YRKM 374
Query: 550 MQQDETMGYIPFFVSTTLGTTSCYRKSQGIEYADSF--NVNVNKWLLTAFDSSCLWVADR 607
+ V F + ++ LL S +W
Sbjct: 375 --------FDRLSV---------------------FPPSAHIPTILL-----SLIWFDVI 400
Query: 608 YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHC 667
+VV+ L ++ ++ T + + ++
Sbjct: 401 KS-DVMVVVNKL--------------------HKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 668 ELAKLFEGKVRRDPRFEISNDVRLGLVCFRLRSENNLIADQNNRKLLEDINASGRLHMVP 727
E + + I + ++LI ++ I G H+
Sbjct: 440 ENEYALHRSIVD--HYNIP----------KTFDSDDLIPPYLDQYFYSHI---GH-HLKN 483
Query: 728 ASQEQNDEVFE--------LQERKRKDDLA----------------YKRSF------FVR 757
+ +F L+++ R D A YK + R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 758 MLG-LVCFRLRSENNLI-ADHP--LQLGLVCFRLRSENNVIADQNNRKL 802
++ ++ F + E NLI + + L++ L+ +E+ I ++ ++++
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALM-----AEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 3e-08
Identities = 107/628 (17%), Positives = 179/628 (28%), Gaps = 238/628 (37%)
Query: 301 LLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYAGSSFICPEF-RPFMNGIE 359
L+ K + Y S + + D + ++ L EF ++ G +
Sbjct: 60 LVGKFLGYVSSLVE-----PSKVGQF-DQVLNLCLT-------------EFENCYLEGND 100
Query: 360 ----------YADSFNVNVNKWLLTAFDSSCLWVADR---YKLTSALV--VD----PLYL 400
D+ V + + + +A R K SAL V L
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 401 QHGHEGAI-DYRHWGIPLSRRFRSL-KLWFVIRTYGLSGLQKYIRRHCE-LAKLFEGKVR 457
G +G DY F L L+ +TY + I+ E L++L +
Sbjct: 159 IFGGQGNTDDY----------FEELRDLY---QTYH-VLVGDLIKFSAETLSELIRTTLD 204
Query: 458 RDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHS 517
+ F ++ L + P D+ LLS
Sbjct: 205 AEKVFTQGLNILE---------WLENPSNT--------P--DKDYLLS------------ 233
Query: 518 CVEKAAMMAFVRLKILEPDDKNSLRGAT-LRQVMQQDETMGYIPF-FVSTTLGTTSCYRK 575
+ ++ G L + + +G+ P S G T
Sbjct: 234 --------IPISCPLI---------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--- 273
Query: 576 SQGIEYA---------DSFNVNVNKWLLTAFDSSCLWV-------ADRYKLTSALVVDPL 619
SQG+ A +SF V+V K + F ++ L +++ D
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLF-----FIGVRCYEAYPNTSLPPSILED-- 326
Query: 620 YLQHGHEGAIDYRHWGIP---LSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAKLFEGK 676
L++ G+P LS I +Q Y+ + + L GK
Sbjct: 327 SLENNE---------GVPSPMLS-----------ISNLTQEQVQDYVNKTN--SHLPAGK 364
Query: 677 VRRDPRFEIS--NDVR----------LGLVCFRLRS---ENNLIADQNN-----RKL--- 713
+ EIS N + L + LR + L DQ+ RKL
Sbjct: 365 -----QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQSRIPFSERKLKFS 417
Query: 714 ---LEDINASGRLH---MVPASQEQNDEVFELQERKRKDDLA---YK-------RSF--- 754
L + + H +VPAS N ++ + D+ Y R
Sbjct: 418 NRFLP-VAS--PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 755 ----FVRMLGLVCFRLR----SENNLIADHPLQLGLVCFRLRSENNVIADQNNRKLLEDI 806
V + RL + A H L G + + L
Sbjct: 475 ISERIVDCI----IRLPVKWETTTQFKATHILDFG------PGGASGLGV------LTHR 518
Query: 807 NASGR-LHMVPASFELQERKRKDDLAYK 833
N G + ++ A L + DD +K
Sbjct: 519 NKDGTGVRVIVAG-TL-DINPDDDYGFK 544
Score = 48.9 bits (116), Expect = 8e-06
Identities = 68/419 (16%), Positives = 122/419 (29%), Gaps = 139/419 (33%)
Query: 28 NSYPSVLADMLSDAIGCIGFSWAASPSCTELETIVLD---WLGKAIGLPEKFLMYPPQGK 84
+Y ++ D++ + + + ++ T L+ WL P
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN----PS---------- 223
Query: 85 NATTPNDIDMNIEDYMTPANQPQSLGG-GVIQSVQNIIV-----LTRGQKKIHP----FV 134
TP+ +DY+ P S GVIQ ++ T G+ + +
Sbjct: 224 --NTPD------KDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 135 DEGVLLSKLMAYCS--KEAHSCVEKAAMMAF--------------VRLKILEPDDKN--- 175
+G++ + +A + V KA + F + ILE +N
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 176 ------SLRGATLRQVMQQ-DETMGYIP--FFVSTTLGTTSCCSFDNLAEIGPVA--KEF 224
S+ T QV ++T ++P V +L NL GP
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL----VNGAKNLVVSGPPQSLYGL 389
Query: 225 DVWLHVDGAYAGS--SFICPEFRPFMNGKTSFDNLHLSPIWYERPSSASECIFVCMLSAR 282
++ L A +G S I PF K F N L P+ ++
Sbjct: 390 NLTLRKAKAPSGLDQSRI-----PFSERKLKFSNRFL-PV------AS------------ 425
Query: 283 AQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDVWLHVDGAYA 342
PF HS + D I + + ++
Sbjct: 426 -----------PF------------------HS-----HLLVPASDLINKDLVKNNVSFN 451
Query: 343 GSSFICPEFRPFMNGI---EYADSFNVNVNKWLLTAFDSSCLW-VADRYKLTSALVVDP 397
P + F +G + S + + ++ W ++K T L P
Sbjct: 452 AKDIQIPVYDTF-DGSDLRVLSGSISERIVDCIIR---LPVKWETTTQFKATHILDFGP 506
Score = 47.7 bits (113), Expect = 2e-05
Identities = 72/546 (13%), Positives = 144/546 (26%), Gaps = 231/546 (42%)
Query: 198 FVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNL 257
+VS+ + + FD + + EF+ ++ G ++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNL--CLTEFE-------------------NCYLEGN----DI 101
Query: 258 H-----LSPIWYERPSSASECIFVCMLSARAQAISKLKKIHP------------------ 294
H L + ++ + ++AR A K
Sbjct: 102 HALAAKLLQE-NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 295 --------FVDE--------GVLLSKLMAYCSKEAHSCVETRGHIQSYRDAIFDV--WLH 336
+ +E VL+ L+ + ++ + T + ++ WL
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 337 V-----DGAYAGSSFI-CP----------------------EFRPFMNG----------- 357
D Y S I CP E R ++ G
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 358 --IEYADS---FNVNVNKWLLTAFDSSCLWV-------ADRYKLTSALVVDPLYLQHGHE 405
I DS F V+V K + F ++ L +++ D L++ E
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLF-----FIGVRCYEAYPNTSLPPSILED--SLENN-E 332
Query: 406 GA------------------IDYRHWGIPLSRRFRSLKLW-----FVIRTYG----LSGL 438
G ++ + +P ++ + L V+ + G L GL
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLVV-S-GPPQSLYGL 389
Query: 439 QKYIRRHCELAKLFEGKV---RRDPRFEISNDVRSSASECIFVCMLAARAQAISKLKKIH 495
+R+ + L + ++ R +F F+ ++
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNR-----------FL--------PVAS----- 425
Query: 496 PFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLKILEPDDKN--SLRGATLRQVMQQD 553
PF HS ++ I + KN S ++
Sbjct: 426 PF------------------HS-----HLLVPASDLINKDLVKNNVSFNAKDIQ------ 456
Query: 554 ETMGYIPFFVSTTLGTTSCYRKSQGIEYADSFNVNVNKWLLTAFDSSCLW-VADRYKLTS 612
IP + T G+ + S + + ++ W ++K T
Sbjct: 457 -----IPVY-DTFDGSDLR-------VLSGSISERIVDCIIR---LPVKWETTTQFKATH 500
Query: 613 ALVVDP 618
L P
Sbjct: 501 ILDFGP 506
Score = 42.3 bits (99), Expect = 0.001
Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 68/178 (38%)
Query: 425 KLW-----FVIRTYGLSGLQKYIRRH-CELAKLFEGKVRRDPR-------FEISND---- 467
+W TYG S + + + L F G+ + R FE D
Sbjct: 1644 DVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 468 -------VRSSASECIF--------------VCMLAARAQAISKLKKIHPFVDEGVL-LS 505
+ ++ F + A LK +G++
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS------KGLIPAD 1756
Query: 506 KLMA------YCSKEAHSCVEKAAMMAF---VRLKILEPDDKNSLRGATLRQVMQQDE 554
A Y A + + A +M+ V + + RG T++ + +DE
Sbjct: 1757 ATFAGHSLGEYA---ALASL--ADVMSIESLVEV--VF------YRGMTMQVAVPRDE 1801
Score = 40.8 bits (95), Expect = 0.002
Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 45/162 (27%)
Query: 726 VPASQ----EQNDEVFE--LQERKRK----DDLAYKRSFFVRMLGLVCFRLRSENNLIAD 775
VP + Q E F L E D+ + LG V + D
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 776 HPLQLGLVCFRLRSENNVIADQNNRKLLEDINASGRLHMVPASFELQER----KRKDDLA 831
L L L F EN + + N DI H + A + K K+ +
Sbjct: 82 QVLNLCLTEF----ENCYL--EGN-----DI------HALAAKLLQENDTTLVKTKELI- 123
Query: 832 YKRSFFVRMVSDPKIYNPKIAVATPTSRR-PTCLASSAEEDE 872
+++ +I P ++ + L + E
Sbjct: 124 --KNY----------ITARIMAKRPFDKKSNSALFRAVGEGN 153
Score = 40.0 bits (93), Expect = 0.004
Identities = 39/212 (18%), Positives = 70/212 (33%), Gaps = 67/212 (31%)
Query: 1 MVLLFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASP--SCTEL 58
+ +LF + R + +P+ + PS+L D L + G SP S + L
Sbjct: 300 ITVLF---------FIGVRCYEAYPNTSLPPSILEDSLENNEG------VPSPMLSISNL 344
Query: 59 ETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPAN-----QPQSLGGGV 113
+ + + K N+ P + I N PQSL G+
Sbjct: 345 T---QEQVQDYV---NKT--------NSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YGL 389
Query: 114 IQSVQNIIVLTR-GQKKIHPFVDEGVLL------------SKLMAYCSKEAHSCVEKAAM 160
+++ + Q +I PF + + S L+ A + K +
Sbjct: 390 NLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLV----PASDLINKDLV 444
Query: 161 MAFVR-----LKILEP--DDKNSLRGATLRQV 185
V ++I P D + G+ LR +
Sbjct: 445 KNNVSFNAKDIQI--PVYDTFD---GSDLRVL 471
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 54.2 bits (130), Expect = 1e-07
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 12/151 (7%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMN---GIEYADSFNVNVNKWLLTAFDSSCLWVADRY 387
D+ +H+D A G F+ P P + + S + + +K+ L + D
Sbjct: 222 IDIDMHIDAASGG--FLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 279
Query: 388 KLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRHC 446
L LV + YL G + I SR + + ++ G G K
Sbjct: 280 ALPQELVFNVDYL-----GG-QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASY 333
Query: 447 ELAKLFEGKVRRDPRFEISNDVRSSASECIF 477
++A ++ + +E R
Sbjct: 334 QVAAYLADEIAKLGPYEFICTGRPDEGIPAV 364
Score = 46.1 bits (109), Expect = 3e-05
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 60/286 (20%)
Query: 468 VRSSASECIFVCMLAARAQAISKLKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAF 527
+SE + +A + + +++ D+ L+ C K A
Sbjct: 108 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG-------PVQICWHKFARYWD 160
Query: 528 VRLKILEPDDKNSLRGATLRQVMQQ--DETMGYIPFFVSTTLGTTSC----------YRK 575
V L+ + P L +++++ + T+G +P F T G ++
Sbjct: 161 VELREI-PMRPGQLF-MDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQA 218
Query: 576 SQG----------------------------IEYADSFNVNVNKWLLTAFDSSCLWVADR 607
G + S + + +K+ L + D
Sbjct: 219 DTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDE 278
Query: 608 YKLTSALVVDPLYLQHGHEGAIDYRHWGIPLSRR-FRSLKLWFVIRTYGLSGLQKYIRRH 666
L LV + YL G + I SR + + ++ G G K
Sbjct: 279 EALPQELVFNVDYL-----GG-QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNAS 332
Query: 667 CELAKLFEGKVRRDPRFEI----SNDVRLGLVCFRLRSENNLIADQ 708
++A ++ + +E D + VCF+L+ +
Sbjct: 333 YQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTL 378
Score = 44.6 bits (105), Expect = 1e-04
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYI---PFFVSTT 202
C K A V L+ + P L M + V T
Sbjct: 143 LVCGPVQICWHKFARYWDVELREI-PMRPGQLF-------MDPKRMIEACDENTIGVVPT 194
Query: 203 LGTTSCCSFDNLAEIGPVAKEF------DVWLHVDGAYAGSSFICPEFRP 246
G T +++ + +F D+ +H+D A G F+ P P
Sbjct: 195 FGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--FLAPFVAP 242
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 41.6 bits (97), Expect = 0.001
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 147 CSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT 206
+ K+ + A ++E + L+ V + + +G P + TT
Sbjct: 149 WPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTT 206
Query: 207 SCC---SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLSP 261
+C D L E+ + +D+ V+ AY S C D S
Sbjct: 207 ACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSL 264
Score = 34.2 bits (78), Expect = 0.19
Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 18/128 (14%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+D+ V+ AY S C + D+F +++K + + + + +
Sbjct: 227 YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ 286
Query: 391 SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 450
+ P R P SL + + + G SG +K ++ E+
Sbjct: 287 DISKMYPG------------RASASP------SLDVLITLLSLGCSGYRKLLKERKEMFV 328
Query: 451 LFEGKVRR 458
++++
Sbjct: 329 YLSTQLKK 336
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 38.5 bits (89), Expect = 0.010
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 5/117 (4%)
Query: 147 CSKEAHSCVEKAAMMAFVRLKILEPDDKNSLRGATLRQVMQQDETMGYIPFFVSTTLGTT 206
+ K+ + A ++E + L+ V + + +G P + TT
Sbjct: 167 WPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELG--PDCILCIHSTT 224
Query: 207 SCC---SFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPFMNGKTSFDNLHLS 260
SC D L E+ + +D+ V+ AY S C D S
Sbjct: 225 SCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQS 281
Score = 33.5 bits (76), Expect = 0.30
Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 18/128 (14%)
Query: 331 FDVWLHVDGAYAGSSFICPEFRPFMNGIEYADSFNVNVNKWLLTAFDSSCLWVADRYKLT 390
+D+ V+ AY S C + D+F +++K + + + + +
Sbjct: 245 YDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQ 304
Query: 391 SALVVDPLYLQHGHEGAIDYRHWGIPLSRRFRSLKLWFVIRTYGLSGLQKYIRRHCELAK 450
+ P R P SL + + + G +G +K ++ E+
Sbjct: 305 EISKMYPG------------RASASP------SLDVLITLLSLGSNGYKKLLKERKEMFS 346
Query: 451 LFEGKVRR 458
++++
Sbjct: 347 YLSNQIKK 354
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 38.2 bits (88), Expect = 0.011
Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 44/212 (20%)
Query: 48 SWAASPSCTELETIVLDWLGKAIGLPEKFLMYPPQGKNATTPNDIDMNIEDYMTPANQPQ 107
++A S + +L+ + +P QG A
Sbjct: 71 AYAGSRNYYDLKDKAKELFNYDYIIP------AHQG-----------------RGAEN-- 105
Query: 108 SLGGGVIQSVQNIIVLTRGQKKIHPFVDEGVLLSKLMAYCSKEAHSCVEKAAMMAFVRLK 167
I+ + K + + + + AH + + V K
Sbjct: 106 ------------ILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 153
Query: 168 ILEPDDKNSLRGAT----LRQVMQQD--ETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVA 221
+ + + +G L++ + Q + + I V+ S NL E+ +A
Sbjct: 154 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 213
Query: 222 KEFDVWLHVDGA-YAGSSFICPEFRPFMNGKT 252
K+ +++ +D A + +++ P T
Sbjct: 214 KQHGIFVVMDSARFCENAYFIKARDPKYKNAT 245
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 34.5 bits (80), Expect = 0.13
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 146 YCSKEAHSCVEKAAMMAF----VRLKILE-PDDKNSLRGATLRQVMQQDETMGYIPF--- 197
YC +H ++ F +L ++ P K L LR+ ++ G +
Sbjct: 87 YCHPASHINNDECGAPEFFSNGAKLMTVDGPAAK--LDIVRLRERTREKV--GDVHTTQP 142
Query: 198 -FVS----TTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGA 233
VS T +G+ + D + IG V K + LH+DG+
Sbjct: 143 ACVSITQATEVGS--IYTLDEIEAIGDVCKSSSLGLHMDGS 181
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 34.2 bits (79), Expect = 0.19
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 146 YCSKEAHSCVEKAAMMAFVRLKILEPDDKN-SLRGATLRQVMQQDE-------TMGYIPF 197
++ H + + K++ + LR A + + ++ + YI
Sbjct: 94 IATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISN 153
Query: 198 FVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGA 233
+T +GT + L +I KE ++L +DGA
Sbjct: 154 --TTEVGT--QYTKQELEDISASCKEHGLYLFLDGA 185
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.26
Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 29/100 (29%)
Query: 786 RLRSENNVIAD--QNNRKLLEDINASGRLHMVPASFELQERKRKD-DLAYKRSFFVRMVS 842
RL E I + RK L++++A+ ++ E +E+ +KD + +R
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQ----EWREKAKKDLEEWNQR-------- 126
Query: 843 DPKIYNPKIAVATPTSRRPTCLASSAEEDEEAESDERSSE 882
+ ++ +R ++A + ++
Sbjct: 127 ----QSEQVEKNKINNR----------IADKAFYQQPDAD 152
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 32.8 bits (75), Expect = 0.55
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 199 VSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYA 235
G ++ +I V E+DV L V+GAYA
Sbjct: 156 PDGNYGNLP-----DVKKIAKVCSEYDVPLLVNGAYA 187
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 31.9 bits (73), Expect = 0.95
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 203 LGTTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEFRPF 247
LGT D L + + ++ L D YA + F P+F
Sbjct: 201 LGT--TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSI 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.1
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 156 EKAAMMAF-VRLKILEPDDKNSLR-GATL 182
EK A+ LK+ D +L AT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 30.7 bits (68), Expect = 1.1
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 520 EKAAMMAF-VRLKILEPDDKNSLR-GATL 546
EK A+ LK+ D +L AT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>1j5u_A Archease, possible chaperone; structural genomics, joint center
for structural G JCSG, protein structure initiative,
PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Length = 136
Score = 30.5 bits (68), Expect = 1.1
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 4 LFHFLSHQVTHWQHPRFHAYFPSGNSYPSVLADMLSDAIGCIGFSWAASPSCTEL----- 58
+ H H +H AY SGNSY +L + + + G
Sbjct: 6 IHHHHHHMRKPIEHTADIAYEISGNSYEELLEEARNILLEEEGIVLDTEEKEKMYPLEET 65
Query: 59 ETIVLDWLGKAIGLPEKF 76
E D + I K
Sbjct: 66 EDAFFDTVNDWILEISKG 83
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 31.5 bits (72), Expect = 1.4
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 205 TTSCCSFDNLAEIGPVAKEFDVWLHVDGAYAGSSFICPEF 244
+ + + L + ++ + L D Y+G++F P F
Sbjct: 204 LGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 30.8 bits (70), Expect = 1.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 207 SCCSFDNLAEIGPVAKEFDVWLHVDGA 233
+F+ L +I E + LH+DGA
Sbjct: 153 QLPAFEELEKISEYCHEQGISLHLDGA 179
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 30.7 bits (70), Expect = 1.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 207 SCCSFDNLAEIGPVAKEFDVWLHVDGA 233
+F L I +E + LH+DGA
Sbjct: 151 VAPAFSELETISRYCRERGIRLHLDGA 177
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 30.2 bits (69), Expect = 3.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 214 LAEIGPVAKEFDVWLHVDGAYA 235
+A IG + + + HVD +
Sbjct: 182 IAAIGEMCRARGIIYHVDATQS 203
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 30.5 bits (68), Expect = 3.1
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 190 ETMGYIPFFVSTTLGTTSCCSFDNLAEIGPVAKEFDVWLHVDGA 233
E + YI V+ L S N+ + + + + + D
Sbjct: 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDAT 216
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 29.6 bits (66), Expect = 4.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 210 SFDNLAEIGPVAKEFDVWLHVDGA 233
S NL + +AK++D+ + +D A
Sbjct: 202 SLANLKAMYSIAKKYDIPVVMDSA 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.421
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,855,721
Number of extensions: 848243
Number of successful extensions: 1417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 92
Length of query: 891
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 789
Effective length of database: 3,853,851
Effective search space: 3040688439
Effective search space used: 3040688439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.8 bits)