BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8521
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta-Sleep-Inducing
          Peptide Immunoreactive Peptide, Nmr, 10 Structures
 pdb|1DIP|B Chain B, The Solution Structure Of Porcine Delta-Sleep-Inducing
          Peptide Immunoreactive Peptide, Nmr, 10 Structures
          Length = 78

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 41/48 (85%)

Query: 19 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETL 66
          DLVK+HLM+AVREEVE+LKE+I EL+E+ +QLE EN++LK  A+ E L
Sbjct: 3  DLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 50


>pdb|2YY0|A Chain A, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
          Domain From Homo Sapiens
 pdb|2YY0|B Chain B, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
          Domain From Homo Sapiens
 pdb|2YY0|C Chain C, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
          Domain From Homo Sapiens
 pdb|2YY0|D Chain D, Crystal Structure Of Ms0802, C-Myc-1 Binding Protein
          Domain From Homo Sapiens
          Length = 53

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 19 DLVKSHLMFAVRE--EVEVLKEKIAELMERINQLEMENSILKANATQ 63
          D +K HL  A  E  E+E+L+ ++AE+ E+   +  EN  LKA   Q
Sbjct: 5  DFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51


>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
          Fused To A Synthetic Heterodimeric Coiled Coil
          Length = 403

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 28 AVREEVEVLKEKIAELMERINQLEM 52
          A++E++  LKEKIA L E+I   E+
Sbjct: 7  ALKEKIAALKEKIAALKEKIKDTEL 31


>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
          Length = 390

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 29  VREEVEVLKEKIAELMERINQLE 51
           +R  +E+L+ K+ E ++RIN L+
Sbjct: 118 LRSRIEILRRKVIEQVQRINLLQ 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.126    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,821,418
Number of Sequences: 62578
Number of extensions: 48373
Number of successful extensions: 195
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 12
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)