Query psy8521
Match_columns 75
No_of_seqs 47 out of 49
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 21:05:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4797|consensus 100.0 5.7E-34 1.2E-38 198.8 6.8 63 11-73 45-109 (123)
2 PF01166 TSC22: TSC-22/dip/bun 100.0 1.6E-33 3.6E-38 176.7 0.9 56 18-73 1-56 (59)
3 PF11365 DUF3166: Protein of u 96.6 0.012 2.7E-07 39.5 6.5 52 17-70 3-55 (96)
4 PF06156 DUF972: Protein of un 96.5 0.0047 1E-07 41.5 4.3 46 18-64 10-55 (107)
5 PRK13169 DNA replication intia 96.5 0.0085 1.8E-07 40.8 5.2 36 28-63 19-54 (110)
6 PF04977 DivIC: Septum formati 94.9 0.11 2.4E-06 30.4 5.2 41 26-68 19-59 (80)
7 PF06005 DUF904: Protein of un 94.7 0.13 2.7E-06 32.6 5.4 32 28-59 22-53 (72)
8 PF10226 DUF2216: Uncharacteri 94.3 0.09 2E-06 39.6 4.7 38 25-62 102-139 (195)
9 smart00338 BRLZ basic region l 94.0 0.38 8.2E-06 28.4 6.0 37 25-61 27-63 (65)
10 TIGR02449 conserved hypothetic 93.9 0.12 2.5E-06 32.8 3.9 29 32-60 1-29 (65)
11 PRK13922 rod shape-determining 93.8 0.2 4.4E-06 36.2 5.5 37 26-62 71-110 (276)
12 PRK09413 IS2 repressor TnpA; R 93.6 0.18 3.9E-06 32.9 4.5 30 32-61 72-101 (121)
13 TIGR02209 ftsL_broad cell divi 93.4 0.39 8.5E-06 28.9 5.5 44 22-68 22-65 (85)
14 PF04508 Pox_A_type_inc: Viral 92.7 0.13 2.7E-06 27.4 2.3 19 31-49 1-19 (23)
15 PF07716 bZIP_2: Basic region 92.7 0.5 1.1E-05 27.4 5.0 28 31-58 25-52 (54)
16 cd07429 Cby_like Chibby, a nuc 92.6 0.15 3.2E-06 35.0 3.1 27 31-57 72-98 (108)
17 PF06005 DUF904: Protein of un 92.3 0.45 9.8E-06 30.1 4.9 29 31-59 18-46 (72)
18 PF04380 BMFP: Membrane fusoge 92.2 0.27 5.9E-06 31.0 3.7 26 28-53 47-72 (79)
19 PF03980 Nnf1: Nnf1 ; InterPr 91.1 1.7 3.6E-05 27.8 6.6 47 12-58 61-107 (109)
20 COG4467 Regulator of replicati 90.9 0.39 8.4E-06 33.8 3.8 36 30-65 21-56 (114)
21 TIGR00219 mreC rod shape-deter 90.8 0.76 1.6E-05 34.5 5.5 35 28-62 70-108 (283)
22 TIGR01837 PHA_granule_1 poly(h 90.8 0.16 3.5E-06 34.0 1.7 30 23-52 88-117 (118)
23 PF14193 DUF4315: Domain of un 90.4 1.1 2.4E-05 29.3 5.3 41 29-69 6-56 (83)
24 PF10805 DUF2730: Protein of u 90.3 0.55 1.2E-05 30.8 3.9 41 26-69 30-70 (106)
25 PRK00888 ftsB cell division pr 90.0 1.2 2.5E-05 29.5 5.2 34 26-59 29-62 (105)
26 TIGR02894 DNA_bind_RsfA transc 89.6 1 2.2E-05 32.9 5.1 35 25-59 98-132 (161)
27 PF15619 Lebercilin: Ciliary p 89.3 1.5 3.3E-05 31.7 5.9 41 22-62 3-43 (194)
28 PRK15422 septal ring assembly 88.7 1.1 2.4E-05 29.7 4.4 23 33-55 20-42 (79)
29 PF01486 K-box: K-box region; 88.1 1.2 2.7E-05 28.2 4.2 37 16-59 60-96 (100)
30 PF03148 Tektin: Tektin family 88.1 2.2 4.8E-05 33.1 6.4 43 17-59 310-352 (384)
31 PF07716 bZIP_2: Basic region 87.9 1.2 2.7E-05 25.7 3.8 28 33-60 20-47 (54)
32 PF11365 DUF3166: Protein of u 87.6 0.66 1.4E-05 31.3 2.9 30 28-57 66-95 (96)
33 PF10224 DUF2205: Predicted co 87.5 1.9 4.1E-05 28.1 4.8 35 27-61 26-60 (80)
34 PF14645 Chibby: Chibby family 87.2 0.87 1.9E-05 30.9 3.3 30 30-59 70-99 (116)
35 PF04977 DivIC: Septum formati 86.9 2.2 4.8E-05 24.8 4.6 28 32-59 18-45 (80)
36 PF07407 Seadorna_VP6: Seadorn 86.1 1.5 3.2E-05 36.3 4.7 37 25-63 33-69 (420)
37 PF00170 bZIP_1: bZIP transcri 85.8 5.2 0.00011 23.5 6.3 26 33-58 28-53 (64)
38 PF08614 ATG16: Autophagy prot 85.6 4.1 8.8E-05 28.6 6.1 37 21-57 141-177 (194)
39 PF01486 K-box: K-box region; 85.5 4.8 0.0001 25.5 5.9 29 22-53 69-97 (100)
40 PRK00888 ftsB cell division pr 85.5 2.3 5E-05 28.0 4.6 29 32-60 28-56 (105)
41 PF14645 Chibby: Chibby family 85.3 2.1 4.6E-05 29.0 4.4 32 26-57 80-111 (116)
42 PF07106 TBPIP: Tat binding pr 84.8 5.1 0.00011 27.2 6.2 40 28-67 76-115 (169)
43 COG3074 Uncharacterized protei 84.6 2.3 5E-05 28.4 4.2 30 30-59 24-60 (79)
44 COG1792 MreC Cell shape-determ 84.5 2.5 5.5E-05 31.9 4.9 35 29-63 71-108 (284)
45 PF04380 BMFP: Membrane fusoge 84.3 3.1 6.8E-05 26.2 4.6 38 15-52 41-78 (79)
46 PF07558 Shugoshin_N: Shugoshi 84.3 0.67 1.5E-05 27.0 1.4 28 34-61 17-44 (46)
47 cd04779 HTH_MerR-like_sg4 Heli 84.0 2.7 5.7E-05 28.7 4.5 43 28-70 78-128 (134)
48 PRK14872 rod shape-determining 83.9 3 6.4E-05 33.1 5.3 37 26-62 59-98 (337)
49 COG3937 Uncharacterized conser 83.6 2 4.4E-05 29.8 3.8 34 20-53 72-105 (108)
50 PF09738 DUF2051: Double stran 83.0 2.8 6.2E-05 32.6 4.8 32 19-54 104-135 (302)
51 TIGR02894 DNA_bind_RsfA transc 81.9 4.4 9.6E-05 29.7 5.2 33 27-59 107-139 (161)
52 PF13600 DUF4140: N-terminal d 81.8 4.7 0.0001 25.2 4.7 30 30-59 69-98 (104)
53 KOG3634|consensus 81.6 2.5 5.4E-05 34.5 4.1 34 21-54 212-253 (361)
54 PF04999 FtsL: Cell division p 81.6 7.4 0.00016 24.2 5.5 35 27-61 38-72 (97)
55 smart00338 BRLZ basic region l 81.4 6.2 0.00014 23.1 4.9 23 37-59 25-47 (65)
56 PF00038 Filament: Intermediat 81.4 4.4 9.6E-05 29.3 5.0 30 30-59 3-32 (312)
57 PRK15422 septal ring assembly 81.2 4.2 9E-05 27.0 4.4 31 29-59 23-60 (79)
58 PF02183 HALZ: Homeobox associ 79.6 5.5 0.00012 23.2 4.2 29 32-60 6-34 (45)
59 PF10211 Ax_dynein_light: Axon 79.6 9.4 0.0002 27.3 6.1 43 18-60 101-149 (189)
60 PF06698 DUF1192: Protein of u 79.2 3.7 8E-05 25.5 3.5 22 33-54 23-44 (59)
61 PF07106 TBPIP: Tat binding pr 78.8 5.2 0.00011 27.2 4.5 11 46-56 117-127 (169)
62 PF02403 Seryl_tRNA_N: Seryl-t 78.8 8.8 0.00019 24.1 5.2 29 29-57 72-100 (108)
63 COG3352 FlaC Putative archaeal 77.7 5.2 0.00011 29.5 4.4 37 28-64 76-112 (157)
64 cd07429 Cby_like Chibby, a nuc 77.2 6.3 0.00014 27.1 4.5 20 40-59 74-93 (108)
65 PRK10884 SH3 domain-containing 76.1 7.9 0.00017 28.4 5.0 26 33-58 127-152 (206)
66 KOG4343|consensus 76.0 4.9 0.00011 35.0 4.5 29 31-59 302-330 (655)
67 PF10779 XhlA: Haemolysin XhlA 75.6 10 0.00023 23.0 4.7 33 27-59 2-34 (71)
68 PF04999 FtsL: Cell division p 75.3 16 0.00034 22.7 5.6 42 28-69 32-77 (97)
69 PF05812 Herpes_BLRF2: Herpesv 75.2 4.7 0.0001 28.2 3.5 22 39-60 4-25 (118)
70 TIGR02209 ftsL_broad cell divi 75.2 15 0.00033 21.9 5.4 31 29-59 22-52 (85)
71 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.1 7.7 0.00017 25.8 4.4 27 33-59 100-126 (132)
72 PF05769 DUF837: Protein of un 75.1 4.3 9.3E-05 29.2 3.4 22 40-61 155-176 (181)
73 PF10224 DUF2205: Predicted co 75.0 12 0.00027 24.3 5.2 32 28-59 20-51 (80)
74 KOG4005|consensus 74.9 5.7 0.00012 31.7 4.3 27 33-59 92-118 (292)
75 PF14197 Cep57_CLD_2: Centroso 74.8 12 0.00026 23.3 5.0 25 34-58 36-60 (69)
76 KOG3119|consensus 74.0 10 0.00022 28.5 5.3 42 20-61 197-238 (269)
77 PRK13182 racA polar chromosome 72.5 6.2 0.00014 28.3 3.7 24 29-52 123-146 (175)
78 PF09744 Jnk-SapK_ap_N: JNK_SA 72.2 6.6 0.00014 27.9 3.7 37 34-70 85-123 (158)
79 PTZ00454 26S protease regulato 72.2 11 0.00025 29.5 5.3 38 30-72 28-65 (398)
80 PF12017 Tnp_P_element: Transp 72.1 16 0.00035 27.4 5.9 41 31-71 18-65 (236)
81 PF05597 Phasin: Poly(hydroxya 72.1 5.6 0.00012 27.6 3.3 30 23-52 101-130 (132)
82 PF11464 Rbsn: Rabenosyn Rab b 71.2 19 0.0004 21.3 5.5 34 16-49 3-40 (42)
83 PRK14127 cell division protein 71.2 14 0.00029 25.2 4.9 29 31-59 37-65 (109)
84 PF13591 MerR_2: MerR HTH fami 71.0 5.7 0.00012 24.7 2.9 45 15-59 37-84 (84)
85 PF06305 DUF1049: Protein of u 70.8 6.1 0.00013 22.8 2.8 23 35-57 45-67 (68)
86 COG4026 Uncharacterized protei 70.7 10 0.00023 30.2 4.8 31 28-58 153-183 (290)
87 PRK14151 heat shock protein Gr 70.6 4.4 9.6E-05 29.1 2.6 33 30-62 26-58 (176)
88 PRK13729 conjugal transfer pil 70.6 9.2 0.0002 32.0 4.7 32 30-61 89-120 (475)
89 PF13974 YebO: YebO-like prote 70.5 8.3 0.00018 25.4 3.6 30 36-65 25-54 (80)
90 PF05644 Miff: Mitochondrial a 70.4 6.9 0.00015 29.8 3.7 25 32-56 196-220 (246)
91 PRK13923 putative spore coat p 70.4 9.2 0.0002 28.0 4.2 28 30-57 110-137 (170)
92 PF04728 LPP: Lipoprotein leuc 70.2 15 0.00032 22.9 4.5 28 32-59 4-31 (56)
93 PF15456 Uds1: Up-regulated Du 69.9 8.2 0.00018 26.5 3.7 23 30-52 21-43 (124)
94 PHA03162 hypothetical protein; 69.6 6.3 0.00014 28.4 3.2 22 40-61 15-36 (135)
95 PF14662 CCDC155: Coiled-coil 69.4 13 0.00029 27.9 4.9 30 26-55 62-91 (193)
96 COG3937 Uncharacterized conser 69.2 8 0.00017 26.9 3.5 28 20-47 79-106 (108)
97 PF08182 Pedibin: Pedibin/Hym- 68.8 16 0.00034 21.2 4.1 32 29-60 2-33 (35)
98 PF11577 NEMO: NF-kappa-B esse 68.6 8.7 0.00019 24.3 3.3 26 29-54 43-68 (68)
99 KOG0977|consensus 68.3 9.7 0.00021 32.3 4.5 30 30-59 41-70 (546)
100 PF15188 CCDC-167: Coiled-coil 67.8 7.6 0.00017 25.6 3.1 25 31-55 43-67 (85)
101 PHA03155 hypothetical protein; 67.8 7.4 0.00016 27.4 3.2 22 40-61 10-31 (115)
102 PF00038 Filament: Intermediat 67.3 20 0.00043 25.9 5.4 37 23-60 209-245 (312)
103 PF06156 DUF972: Protein of un 66.9 17 0.00036 24.4 4.6 29 31-59 15-43 (107)
104 TIGR03752 conj_TIGR03752 integ 66.7 11 0.00025 31.5 4.5 29 31-59 66-94 (472)
105 PF14775 NYD-SP28_assoc: Sperm 66.6 15 0.00032 22.4 3.9 36 25-61 21-56 (60)
106 TIGR01834 PHA_synth_III_E poly 66.4 9.5 0.00021 30.3 3.9 41 18-58 276-316 (320)
107 PF09006 Surfac_D-trimer: Lung 66.2 20 0.00043 21.7 4.4 24 33-56 1-24 (46)
108 PF00206 Lyase_1: Lyase; Inte 65.9 25 0.00055 26.1 5.8 38 17-54 111-149 (312)
109 PF13851 GAS: Growth-arrest sp 65.4 26 0.00057 25.2 5.7 37 18-59 26-62 (201)
110 cd04772 HTH_TioE_rpt1 First He 65.2 25 0.00053 22.3 5.0 23 31-53 76-98 (99)
111 PF07047 OPA3: Optic atrophy 3 64.9 12 0.00026 25.4 3.7 24 34-57 108-131 (134)
112 PRK01203 prefoldin subunit alp 64.6 34 0.00074 24.0 6.0 40 29-70 5-44 (130)
113 PRK10265 chaperone-modulator p 64.2 11 0.00023 24.4 3.2 42 18-59 48-92 (101)
114 PRK14157 heat shock protein Gr 64.0 16 0.00036 27.7 4.6 38 28-65 81-118 (227)
115 PF05557 MAD: Mitotic checkpoi 63.9 15 0.00033 30.4 4.8 43 18-60 484-532 (722)
116 PF12808 Mto2_bdg: Micro-tubul 63.3 8.1 0.00018 23.6 2.4 25 41-65 25-49 (52)
117 PRK10884 SH3 domain-containing 62.8 23 0.00049 26.0 5.0 31 29-59 137-167 (206)
118 PF12097 DUF3573: Protein of u 62.7 11 0.00023 31.2 3.6 28 28-55 39-66 (383)
119 KOG4571|consensus 62.3 16 0.00035 29.1 4.4 37 26-62 250-286 (294)
120 PRK14143 heat shock protein Gr 62.3 20 0.00043 27.1 4.8 38 28-65 71-108 (238)
121 PF07412 Geminin: Geminin; In 62.1 11 0.00024 28.3 3.3 36 27-62 121-156 (200)
122 PF04012 PspA_IM30: PspA/IM30 61.6 27 0.00058 24.3 5.0 33 29-61 110-142 (221)
123 PF11853 DUF3373: Protein of u 61.2 13 0.00027 31.2 3.8 39 21-60 15-53 (489)
124 PF09311 Rab5-bind: Rabaptin-l 61.0 6.5 0.00014 27.6 1.9 39 23-61 7-45 (181)
125 PF08172 CASP_C: CASP C termin 60.7 17 0.00037 27.3 4.2 33 28-60 83-115 (248)
126 PF12709 Kinetocho_Slk19: Cent 60.1 24 0.00052 23.5 4.4 26 38-63 49-74 (87)
127 PF05103 DivIVA: DivIVA protei 59.7 5.2 0.00011 25.4 1.1 29 29-57 30-58 (131)
128 PF04340 DUF484: Protein of un 59.6 12 0.00027 26.4 3.1 29 16-45 40-68 (225)
129 PRK14151 heat shock protein Gr 59.5 25 0.00054 25.3 4.7 50 13-64 2-51 (176)
130 PF15058 Speriolin_N: Sperioli 59.5 16 0.00035 27.8 3.8 27 34-60 8-40 (200)
131 PRK10963 hypothetical protein; 59.4 16 0.00034 26.3 3.7 19 32-50 45-63 (223)
132 TIGR02231 conserved hypothetic 59.2 14 0.0003 29.2 3.6 37 25-61 65-108 (525)
133 PF13870 DUF4201: Domain of un 59.0 33 0.00071 23.5 5.0 37 10-52 136-173 (177)
134 PF15369 KIAA1328: Uncharacter 58.8 20 0.00043 29.0 4.4 37 19-57 12-52 (328)
135 COG2919 Septum formation initi 58.7 20 0.00044 23.7 3.8 30 31-60 57-86 (117)
136 KOG3819|consensus 58.6 15 0.00033 31.3 3.9 40 23-62 131-170 (513)
137 PF04111 APG6: Autophagy prote 58.6 32 0.00069 26.4 5.4 33 27-59 46-78 (314)
138 PRK14153 heat shock protein Gr 58.5 30 0.00064 25.5 5.0 50 15-64 24-73 (194)
139 PRK13169 DNA replication intia 58.4 25 0.00053 23.9 4.3 29 31-59 15-43 (110)
140 PF10473 CENP-F_leu_zip: Leuci 58.4 29 0.00064 24.4 4.8 29 30-58 51-79 (140)
141 COG5509 Uncharacterized small 58.3 18 0.0004 23.4 3.4 22 33-54 27-48 (65)
142 PRK14139 heat shock protein Gr 58.2 27 0.00059 25.5 4.7 36 29-64 37-72 (185)
143 PF03980 Nnf1: Nnf1 ; InterPr 58.1 28 0.00061 22.1 4.3 27 33-59 75-101 (109)
144 PRK14127 cell division protein 58.0 25 0.00054 24.0 4.2 27 29-55 42-68 (109)
145 TIGR00414 serS seryl-tRNA synt 58.0 32 0.0007 27.2 5.4 32 28-59 73-104 (418)
146 PRK14161 heat shock protein Gr 57.5 25 0.00054 25.4 4.4 35 30-64 25-59 (178)
147 COG3553 Uncharacterized protei 57.5 9.8 0.00021 26.2 2.2 21 14-34 67-89 (96)
148 PF04849 HAP1_N: HAP1 N-termin 57.3 20 0.00044 28.4 4.2 26 33-58 162-187 (306)
149 PF08946 Osmo_CC: Osmosensory 57.2 18 0.00039 22.0 3.1 35 16-51 5-39 (46)
150 PF13600 DUF4140: N-terminal d 56.3 41 0.00089 20.9 4.8 33 25-57 71-103 (104)
151 PRK15396 murein lipoprotein; P 56.0 35 0.00075 22.1 4.5 29 31-59 25-53 (78)
152 PF12711 Kinesin-relat_1: Kine 56.0 37 0.0008 22.5 4.7 35 27-61 27-67 (86)
153 KOG0977|consensus 55.9 5.1 0.00011 33.9 0.7 33 29-61 294-326 (546)
154 PRK14158 heat shock protein Gr 55.7 31 0.00068 25.3 4.7 37 28-64 44-80 (194)
155 PF11559 ADIP: Afadin- and alp 55.5 51 0.0011 21.9 5.4 31 28-58 63-93 (151)
156 PRK14148 heat shock protein Gr 55.2 22 0.00047 26.2 3.8 37 27-63 43-79 (195)
157 cd00890 Prefoldin Prefoldin is 55.0 50 0.0011 20.6 5.8 37 15-52 86-122 (129)
158 PF10398 DUF2443: Protein of u 54.9 15 0.00033 24.5 2.7 17 28-44 54-70 (79)
159 TIGR02231 conserved hypothetic 54.8 35 0.00075 27.1 5.1 22 30-51 84-105 (525)
160 KOG3759|consensus 54.4 16 0.00034 31.7 3.4 23 33-55 229-251 (621)
161 PRK05431 seryl-tRNA synthetase 54.3 40 0.00088 26.7 5.4 34 28-61 70-103 (425)
162 KOG0982|consensus 54.2 25 0.00055 29.9 4.5 33 31-63 285-322 (502)
163 PRK14162 heat shock protein Gr 53.9 35 0.00076 25.1 4.7 36 29-64 44-79 (194)
164 COG2919 Septum formation initi 53.7 38 0.00082 22.4 4.5 30 32-61 51-80 (117)
165 COG2433 Uncharacterized conser 53.7 19 0.00041 31.6 3.7 33 27-59 425-457 (652)
166 PF01920 Prefoldin_2: Prefoldi 53.6 48 0.001 20.0 6.4 39 15-54 61-99 (106)
167 PLN02678 seryl-tRNA synthetase 53.5 40 0.00087 27.5 5.4 33 29-61 76-108 (448)
168 PF13863 DUF4200: Domain of un 53.2 51 0.0011 20.9 4.9 36 28-63 85-120 (126)
169 PRK14140 heat shock protein Gr 52.8 24 0.00051 25.9 3.7 29 31-59 44-72 (191)
170 COG3165 Uncharacterized protei 52.7 31 0.00066 26.3 4.4 34 20-53 168-201 (204)
171 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.6 28 0.00061 23.1 3.8 21 30-50 104-124 (132)
172 PF10186 Atg14: UV radiation r 52.1 53 0.0011 22.9 5.2 29 30-58 76-104 (302)
173 cd02656 MIT MIT: domain contai 52.0 29 0.00063 20.5 3.4 38 15-52 23-68 (75)
174 PRK14148 heat shock protein Gr 51.9 39 0.00085 24.9 4.7 35 29-65 38-72 (195)
175 PRK14155 heat shock protein Gr 51.6 36 0.00078 25.2 4.5 35 30-64 19-53 (208)
176 PRK05771 V-type ATP synthase s 51.6 36 0.00079 27.8 4.9 30 30-59 99-128 (646)
177 COG4839 FtsL Protein required 51.4 32 0.00069 24.3 4.0 39 25-66 61-99 (120)
178 PF11382 DUF3186: Protein of u 51.3 32 0.00069 26.1 4.3 31 29-59 37-67 (308)
179 PF05529 Bap31: B-cell recepto 51.2 34 0.00073 23.6 4.1 32 29-60 152-183 (192)
180 PRK14139 heat shock protein Gr 50.8 25 0.00055 25.6 3.6 35 28-64 29-63 (185)
181 PF09712 PHA_synth_III_E: Poly 50.7 13 0.00028 28.3 2.1 27 25-51 266-292 (293)
182 PRK15366 type III secretion sy 50.2 35 0.00076 22.8 3.9 45 23-70 5-49 (80)
183 KOG2685|consensus 49.9 68 0.0015 26.8 6.3 40 18-57 338-377 (421)
184 cd04769 HTH_MerR2 Helix-Turn-H 49.7 67 0.0014 20.6 5.1 30 29-58 84-113 (116)
185 PF12718 Tropomyosin_1: Tropom 49.6 36 0.00078 23.4 4.0 25 33-57 16-40 (143)
186 PF14915 CCDC144C: CCDC144C pr 49.5 17 0.00036 29.1 2.7 20 42-61 218-237 (305)
187 COG1842 PspA Phage shock prote 49.3 50 0.0011 24.6 5.0 37 27-63 109-145 (225)
188 TIGR02426 protocat_pcaB 3-carb 49.3 61 0.0013 24.7 5.6 38 18-55 100-137 (338)
189 PRK13923 putative spore coat p 48.9 49 0.0011 24.3 4.8 27 34-60 107-133 (170)
190 PF05384 DegS: Sensor protein 48.9 61 0.0013 23.2 5.2 32 29-60 32-63 (159)
191 PRK06390 adenylosuccinate lyas 48.7 60 0.0013 25.7 5.6 38 18-55 103-140 (451)
192 PRK14158 heat shock protein Gr 48.1 32 0.0007 25.3 3.8 32 31-64 40-71 (194)
193 PRK14147 heat shock protein Gr 48.1 41 0.0009 24.0 4.3 34 31-64 25-58 (172)
194 PF10458 Val_tRNA-synt_C: Valy 48.1 23 0.00049 21.2 2.5 38 30-67 3-42 (66)
195 PF04859 DUF641: Plant protein 48.1 25 0.00055 24.6 3.1 21 31-51 108-128 (131)
196 PLN02320 seryl-tRNA synthetase 48.0 53 0.0012 27.4 5.4 32 28-59 134-165 (502)
197 PF12718 Tropomyosin_1: Tropom 47.8 53 0.0012 22.6 4.6 26 29-54 5-30 (143)
198 cd00187 TOP4c DNA Topoisomeras 47.6 57 0.0012 26.5 5.4 41 12-52 386-426 (445)
199 PRK14154 heat shock protein Gr 47.2 50 0.0011 24.7 4.7 34 30-63 58-91 (208)
200 PF14282 FlxA: FlxA-like prote 47.1 34 0.00074 22.3 3.5 21 32-52 20-40 (106)
201 PRK13922 rod shape-determining 47.0 74 0.0016 23.0 5.5 24 34-57 72-95 (276)
202 PF10205 KLRAQ: Predicted coil 46.5 67 0.0015 22.0 4.9 24 34-57 29-52 (102)
203 PF13815 Dzip-like_N: Iguana/D 46.2 51 0.0011 21.6 4.2 25 33-57 89-113 (118)
204 PRK05975 3-carboxy-cis,cis-muc 46.2 73 0.0016 24.6 5.6 38 18-55 109-146 (351)
205 PF10226 DUF2216: Uncharacteri 45.8 1.1E+02 0.0024 23.2 6.4 40 22-61 39-78 (195)
206 COG2433 Uncharacterized conser 45.8 57 0.0012 28.7 5.4 28 33-60 417-444 (652)
207 KOG4005|consensus 45.7 98 0.0021 24.9 6.4 34 27-60 79-112 (292)
208 PF10883 DUF2681: Protein of u 45.5 38 0.00082 22.4 3.5 24 33-56 25-48 (87)
209 PF08614 ATG16: Autophagy prot 45.4 78 0.0017 22.1 5.2 29 29-57 121-149 (194)
210 cd01595 Adenylsuccinate_lyase_ 45.3 81 0.0018 24.2 5.7 37 18-54 90-126 (381)
211 PF03310 Cauli_DNA-bind: Cauli 44.8 65 0.0014 22.7 4.8 33 28-60 10-42 (121)
212 PF07061 Swi5: Swi5; InterPro 44.8 78 0.0017 20.3 4.8 26 35-60 4-29 (83)
213 COG2960 Uncharacterized protei 44.7 80 0.0017 21.9 5.1 27 29-55 57-90 (103)
214 PRK14164 heat shock protein Gr 44.7 42 0.00092 25.2 4.0 34 31-64 77-110 (218)
215 smart00434 TOP4c DNA Topoisome 44.6 67 0.0014 25.9 5.4 40 13-52 397-436 (445)
216 cd02683 MIT_1 MIT: domain cont 44.5 49 0.0011 20.6 3.7 29 24-52 35-68 (77)
217 PF04799 Fzo_mitofusin: fzo-li 44.3 1.3E+02 0.0028 22.2 6.4 40 17-56 106-145 (171)
218 PF05190 MutS_IV: MutS family 44.3 60 0.0013 18.9 3.9 23 31-53 4-26 (92)
219 PRK14159 heat shock protein Gr 44.2 51 0.0011 23.9 4.3 35 30-64 29-63 (176)
220 PHA02592 52 DNA topisomerase I 44.2 67 0.0014 26.2 5.4 38 15-52 386-423 (439)
221 PF09278 MerR-DNA-bind: MerR, 44.2 59 0.0013 18.3 4.3 26 32-57 37-62 (65)
222 PF13815 Dzip-like_N: Iguana/D 44.0 90 0.002 20.4 5.2 27 31-57 80-106 (118)
223 PF02996 Prefoldin: Prefoldin 43.8 79 0.0017 19.7 5.2 38 15-53 76-113 (120)
224 PF07047 OPA3: Optic atrophy 3 43.5 50 0.0011 22.3 3.9 23 29-51 110-132 (134)
225 PRK14163 heat shock protein Gr 43.4 62 0.0013 24.3 4.7 36 29-64 45-80 (214)
226 KOG3335|consensus 43.0 83 0.0018 23.7 5.3 22 29-50 111-132 (181)
227 TIGR01242 26Sp45 26S proteasom 42.8 68 0.0015 24.0 4.9 30 30-59 5-34 (364)
228 TIGR01063 gyrA DNA gyrase, A s 42.7 75 0.0016 27.5 5.7 38 15-52 411-448 (800)
229 PF07334 IFP_35_N: Interferon- 42.6 61 0.0013 21.1 4.1 32 27-58 3-34 (76)
230 TIGR02051 MerR Hg(II)-responsi 42.5 67 0.0015 20.9 4.3 29 32-60 77-105 (124)
231 PRK09053 3-carboxy-cis,cis-muc 42.5 74 0.0016 25.2 5.2 38 18-55 109-146 (452)
232 PF15397 DUF4618: Domain of un 42.4 80 0.0017 24.4 5.3 34 28-61 190-223 (258)
233 PRK07492 adenylosuccinate lyas 42.3 79 0.0017 25.2 5.4 37 18-54 98-134 (435)
234 PF08898 DUF1843: Domain of un 42.3 23 0.0005 22.0 1.9 18 29-46 36-53 (53)
235 PF08826 DMPK_coil: DMPK coile 42.2 83 0.0018 19.5 6.8 44 15-59 10-53 (61)
236 PRK05561 DNA topoisomerase IV 42.1 79 0.0017 27.3 5.7 41 12-52 418-458 (742)
237 PRK14154 heat shock protein Gr 41.9 36 0.00077 25.4 3.3 31 32-64 53-83 (208)
238 PRK14160 heat shock protein Gr 41.6 69 0.0015 23.9 4.7 37 28-64 65-101 (211)
239 cd04766 HTH_HspR Helix-Turn-He 41.5 42 0.0009 20.6 3.1 18 43-60 70-87 (91)
240 PRK14144 heat shock protein Gr 41.4 71 0.0015 23.7 4.7 37 28-64 49-85 (199)
241 PF04849 HAP1_N: HAP1 N-termin 41.3 59 0.0013 25.8 4.5 35 27-61 230-264 (306)
242 PRK14145 heat shock protein Gr 41.3 72 0.0016 23.6 4.8 37 28-64 49-85 (196)
243 KOG2077|consensus 41.2 88 0.0019 28.2 5.9 43 14-56 316-375 (832)
244 PF05911 DUF869: Plant protein 41.1 87 0.0019 27.6 5.9 40 20-59 116-155 (769)
245 PF09744 Jnk-SapK_ap_N: JNK_SA 41.1 82 0.0018 22.4 4.9 33 28-60 86-118 (158)
246 PF10883 DUF2681: Protein of u 41.1 46 0.001 22.0 3.4 20 39-58 24-43 (87)
247 TIGR02338 gimC_beta prefoldin, 40.9 97 0.0021 19.9 5.8 20 32-51 82-101 (110)
248 cd01597 pCLME prokaryotic 3-ca 40.9 1E+02 0.0022 24.1 5.8 38 18-55 100-137 (437)
249 COG3416 Uncharacterized protei 40.6 31 0.00067 26.9 2.8 23 31-53 55-77 (233)
250 PF14077 WD40_alt: Alternative 40.5 26 0.00057 21.5 2.0 26 33-58 13-38 (48)
251 COG4026 Uncharacterized protei 40.3 45 0.00097 26.7 3.7 23 32-54 164-186 (290)
252 cd01359 Argininosuccinate_lyas 40.1 98 0.0021 24.1 5.5 38 18-55 88-125 (435)
253 PRK05771 V-type ATP synthase s 40.0 76 0.0017 26.0 5.1 34 28-61 90-123 (646)
254 KOG4593|consensus 39.9 48 0.001 29.4 4.1 37 22-59 488-524 (716)
255 PF07820 TraC: TraC-like prote 39.8 51 0.0011 22.3 3.5 19 28-46 6-24 (92)
256 PF12548 DUF3740: Sulfatase pr 39.4 1.1E+02 0.0025 21.6 5.3 33 18-51 101-133 (145)
257 cd04789 HTH_Cfa Helix-Turn-Hel 39.2 77 0.0017 20.0 4.1 28 33-60 73-100 (102)
258 cd01334 Lyase_I Lyase class I 39.1 1E+02 0.0023 22.9 5.4 37 18-54 81-117 (325)
259 PRK14140 heat shock protein Gr 39.1 82 0.0018 23.1 4.7 35 28-64 34-68 (191)
260 PRK08540 adenylosuccinate lyas 39.0 1.1E+02 0.0023 24.2 5.7 38 18-55 104-141 (449)
261 PRK11239 hypothetical protein; 38.8 64 0.0014 24.7 4.3 15 36-50 188-202 (215)
262 PRK09973 putative outer membra 38.8 91 0.002 20.7 4.5 31 31-61 24-54 (85)
263 cd01360 Adenylsuccinate_lyase_ 38.8 1.1E+02 0.0024 23.7 5.6 38 18-55 92-129 (387)
264 PRK09413 IS2 repressor TnpA; R 38.7 90 0.0019 20.2 4.5 32 28-59 75-106 (121)
265 KOG2391|consensus 38.7 1.3E+02 0.0028 24.9 6.2 44 18-61 212-269 (365)
266 PF14723 SSFA2_C: Sperm-specif 38.7 57 0.0012 24.5 3.9 33 20-52 134-166 (179)
267 PF09789 DUF2353: Uncharacteri 38.6 51 0.0011 26.2 3.8 36 29-64 77-112 (319)
268 TIGR02047 CadR-PbrR Cd(II)/Pb( 38.6 1.1E+02 0.0025 20.0 5.0 27 33-59 81-107 (127)
269 PRK14156 heat shock protein Gr 38.5 65 0.0014 23.4 4.1 35 28-62 31-65 (177)
270 PF04102 SlyX: SlyX; InterPro 38.5 92 0.002 18.9 4.5 37 23-60 11-47 (69)
271 cd01362 Fumarase_classII Class 38.4 93 0.002 25.0 5.3 37 18-54 137-174 (455)
272 PF10066 DUF2304: Uncharacteri 38.4 1.1E+02 0.0023 20.0 4.7 25 31-55 86-110 (115)
273 PRK07380 adenylosuccinate lyas 38.3 99 0.0022 24.6 5.4 38 18-55 95-132 (431)
274 KOG4603|consensus 38.2 75 0.0016 24.3 4.5 26 31-56 79-104 (201)
275 cd00584 Prefoldin_alpha Prefol 38.2 1.1E+02 0.0023 19.6 5.0 35 16-51 87-121 (129)
276 PRK10227 DNA-binding transcrip 38.1 82 0.0018 21.2 4.3 26 34-59 82-107 (135)
277 PF12958 DUF3847: Protein of u 37.9 71 0.0015 21.0 3.9 23 30-52 7-29 (86)
278 PRK09039 hypothetical protein; 37.8 96 0.0021 24.0 5.1 22 30-51 143-164 (343)
279 PRK13353 aspartate ammonia-lya 37.7 1E+02 0.0022 24.9 5.5 38 18-55 142-179 (473)
280 PF07200 Mod_r: Modifier of ru 37.5 1E+02 0.0022 20.3 4.6 28 30-57 54-81 (150)
281 PF10018 Med4: Vitamin-D-recep 37.4 93 0.002 21.8 4.6 39 16-54 16-59 (188)
282 PF01166 TSC22: TSC-22/dip/bun 37.3 98 0.0021 19.6 4.3 23 30-52 20-42 (59)
283 PF05377 FlaC_arch: Flagella a 37.1 75 0.0016 19.6 3.7 19 29-47 19-37 (55)
284 smart00745 MIT Microtubule Int 37.0 88 0.0019 18.3 3.9 38 16-53 26-71 (77)
285 PHA01750 hypothetical protein 36.8 1.3E+02 0.0027 20.0 5.0 31 28-58 39-69 (75)
286 cd04788 HTH_NolA-AlbR Helix-Tu 36.8 60 0.0013 20.3 3.3 20 33-52 75-94 (96)
287 PRK14161 heat shock protein Gr 36.7 65 0.0014 23.2 3.8 34 29-64 17-50 (178)
288 PF01025 GrpE: GrpE; InterPro 36.5 57 0.0012 21.6 3.3 30 31-60 18-47 (165)
289 COG1579 Zn-ribbon protein, pos 36.4 1.2E+02 0.0026 23.2 5.4 43 15-57 79-122 (239)
290 PF11488 Lge1: Transcriptional 36.3 1.1E+02 0.0023 19.1 5.4 39 29-67 28-66 (80)
291 PRK03918 chromosome segregatio 36.2 1.1E+02 0.0023 25.3 5.4 40 29-68 624-663 (880)
292 PF15397 DUF4618: Domain of un 36.1 74 0.0016 24.6 4.3 40 27-66 196-235 (258)
293 PF05010 TACC: Transforming ac 36.1 62 0.0013 24.0 3.7 33 30-62 110-142 (207)
294 PRK14160 heat shock protein Gr 36.0 76 0.0017 23.7 4.2 34 29-64 59-92 (211)
295 PF04568 IATP: Mitochondrial A 35.8 86 0.0019 21.1 4.1 22 31-52 72-97 (100)
296 PF15619 Lebercilin: Ciliary p 35.5 1E+02 0.0022 22.3 4.8 30 24-53 61-90 (194)
297 TIGR00928 purB adenylosuccinat 35.3 1.3E+02 0.0028 23.6 5.6 38 18-55 98-135 (435)
298 cd01357 Aspartase Aspartase. T 35.3 1.2E+02 0.0027 24.2 5.5 37 18-54 137-173 (450)
299 PF05266 DUF724: Protein of un 35.3 75 0.0016 23.0 4.0 26 33-58 126-151 (190)
300 KOG3335|consensus 35.2 50 0.0011 24.8 3.1 35 30-64 105-140 (181)
301 cd01282 HTH_MerR-like_sg3 Heli 35.1 1.1E+02 0.0024 19.6 4.4 27 33-59 83-109 (112)
302 PRK10636 putative ABC transpor 34.8 79 0.0017 25.9 4.5 27 27-53 559-585 (638)
303 PRK14149 heat shock protein Gr 34.8 85 0.0018 23.1 4.3 34 31-64 43-76 (191)
304 PF14197 Cep57_CLD_2: Centroso 34.7 1.2E+02 0.0025 18.9 5.1 31 29-59 3-33 (69)
305 PF05769 DUF837: Protein of un 34.7 1.3E+02 0.0029 21.6 5.2 37 25-61 42-86 (181)
306 cd04768 HTH_BmrR-like Helix-Tu 34.4 63 0.0014 20.2 3.1 22 31-52 73-94 (96)
307 PRK14145 heat shock protein Gr 34.3 72 0.0016 23.6 3.8 32 31-64 45-76 (196)
308 COG2960 Uncharacterized protei 33.9 49 0.0011 22.9 2.7 34 15-48 50-90 (103)
309 PRK12425 fumarate hydratase; P 33.9 1.3E+02 0.0028 24.3 5.5 38 18-55 139-177 (464)
310 PF12761 End3: Actin cytoskele 33.5 78 0.0017 23.7 3.9 25 32-56 97-121 (195)
311 COG3159 Uncharacterized protei 33.5 76 0.0017 24.4 3.9 42 11-52 3-66 (218)
312 PF01763 Herpes_UL6: Herpesvir 33.5 59 0.0013 27.8 3.6 24 34-57 366-389 (557)
313 PF00308 Bac_DnaA: Bacterial d 33.5 35 0.00075 24.1 2.0 16 21-36 46-61 (219)
314 PF07111 HCR: Alpha helical co 33.5 92 0.002 27.9 4.9 33 29-61 329-361 (739)
315 cd04775 HTH_Cfa-like Helix-Tur 33.5 1.1E+02 0.0024 19.2 4.2 28 32-59 72-99 (102)
316 PF07200 Mod_r: Modifier of ru 33.4 1.4E+02 0.0031 19.6 4.9 19 30-48 33-51 (150)
317 PRK14141 heat shock protein Gr 33.1 1E+02 0.0022 22.9 4.5 35 29-63 36-70 (209)
318 PRK04833 argininosuccinate lya 33.0 1.4E+02 0.003 23.9 5.4 38 18-55 110-147 (455)
319 PRK13752 putative transcriptio 33.0 1E+02 0.0022 21.0 4.2 28 33-60 86-113 (144)
320 TIGR01061 parC_Gpos DNA topois 33.0 1.3E+02 0.0027 26.0 5.5 41 12-52 408-448 (738)
321 PRK14143 heat shock protein Gr 32.8 76 0.0016 24.0 3.8 31 31-63 67-97 (238)
322 PLN02646 argininosuccinate lya 32.6 1.4E+02 0.0031 24.1 5.5 38 18-55 124-161 (474)
323 PF07888 CALCOCO1: Calcium bin 32.6 1.2E+02 0.0025 26.0 5.2 34 28-61 203-236 (546)
324 PF05082 Rop-like: Rop-like; 32.4 1.1E+02 0.0023 19.5 3.9 27 31-57 2-28 (66)
325 cd00890 Prefoldin Prefoldin is 32.4 1.3E+02 0.0028 18.8 4.6 29 31-59 94-122 (129)
326 PF08776 VASP_tetra: VASP tetr 32.3 1.1E+02 0.0024 18.0 4.9 27 17-43 4-30 (40)
327 PRK14162 heat shock protein Gr 32.3 77 0.0017 23.3 3.7 29 32-62 40-68 (194)
328 smart00340 HALZ homeobox assoc 32.2 1.2E+02 0.0026 18.4 4.5 30 33-62 7-36 (44)
329 PF08641 Mis14: Kinetochore pr 32.1 85 0.0019 21.2 3.7 47 22-68 20-70 (139)
330 PRK00485 fumC fumarate hydrata 31.9 1.5E+02 0.0032 23.8 5.5 38 18-55 141-179 (464)
331 cd01108 HTH_CueR Helix-Turn-He 31.8 1.2E+02 0.0025 19.8 4.2 27 34-60 82-108 (127)
332 PF07989 Microtub_assoc: Micro 31.6 58 0.0013 20.5 2.6 19 40-58 2-20 (75)
333 PF14723 SSFA2_C: Sperm-specif 31.5 68 0.0015 24.1 3.3 24 25-51 153-176 (179)
334 PTZ00454 26S protease regulato 31.5 1.8E+02 0.004 22.9 5.9 36 23-58 14-49 (398)
335 PF04212 MIT: MIT (microtubule 31.5 1.1E+02 0.0024 17.7 4.4 38 15-52 22-67 (69)
336 PF09177 Syntaxin-6_N: Syntaxi 31.4 87 0.0019 19.6 3.4 26 29-54 44-69 (97)
337 PRK09039 hypothetical protein; 31.3 1.2E+02 0.0026 23.5 4.7 29 30-58 136-164 (343)
338 PF11932 DUF3450: Protein of u 31.3 1.7E+02 0.0036 21.1 5.2 16 40-55 58-73 (251)
339 KOG4360|consensus 31.2 53 0.0012 28.6 3.1 31 29-59 157-187 (596)
340 PF05010 TACC: Transforming ac 31.2 1.6E+02 0.0035 21.9 5.2 35 23-57 8-42 (207)
341 PRK00855 argininosuccinate lya 31.2 1.6E+02 0.0035 23.3 5.6 37 18-54 112-148 (459)
342 COG0576 GrpE Molecular chapero 31.1 1.1E+02 0.0024 22.1 4.3 39 26-64 38-76 (193)
343 PRK09514 zntR zinc-responsive 30.8 1.2E+02 0.0025 20.4 4.2 28 33-60 83-110 (140)
344 PF14712 Snapin_Pallidin: Snap 30.8 74 0.0016 19.4 2.9 35 17-51 56-91 (92)
345 PTZ00464 SNF-7-like protein; P 30.7 1.2E+02 0.0027 22.3 4.6 30 32-61 19-48 (211)
346 PRK14146 heat shock protein Gr 30.7 1.3E+02 0.0028 22.3 4.7 35 30-64 60-94 (215)
347 PF07412 Geminin: Geminin; In 30.6 68 0.0015 24.2 3.2 33 29-61 130-162 (200)
348 PLN00134 fumarate hydratase; P 30.6 1.6E+02 0.0036 23.7 5.6 38 18-55 133-171 (458)
349 cd07596 BAR_SNX The Bin/Amphip 30.5 1.2E+02 0.0027 19.8 4.2 22 33-54 147-168 (218)
350 cd07613 BAR_Endophilin_A1 The 30.5 66 0.0014 24.2 3.1 32 17-48 143-174 (223)
351 PF03148 Tektin: Tektin family 30.3 1.2E+02 0.0026 23.7 4.6 48 8-59 104-151 (384)
352 PF05873 Mt_ATP-synt_D: ATP sy 30.3 97 0.0021 21.8 3.8 35 32-66 97-131 (161)
353 cd04776 HTH_GnyR Helix-Turn-He 30.1 1.6E+02 0.0035 19.2 5.2 28 30-57 79-106 (118)
354 cd01598 PurB PurB_like adenylo 30.1 1.6E+02 0.0034 23.7 5.4 37 18-54 102-139 (425)
355 TIGR02043 ZntR Zn(II)-responsi 30.0 1.3E+02 0.0028 19.9 4.2 29 33-61 83-111 (131)
356 cd04784 HTH_CadR-PbrR Helix-Tu 29.9 1.3E+02 0.0029 19.4 4.2 26 34-59 82-107 (127)
357 PRK10455 periplasmic protein; 29.8 1.7E+02 0.0038 20.6 5.0 23 47-70 117-139 (161)
358 PRK12308 bifunctional arginino 29.8 1.7E+02 0.0036 24.1 5.6 38 18-55 110-147 (614)
359 PF06810 Phage_GP20: Phage min 29.7 1.3E+02 0.0027 21.0 4.3 15 34-48 54-68 (155)
360 PF09730 BicD: Microtubule-ass 29.5 1.2E+02 0.0026 26.7 4.9 41 16-60 72-112 (717)
361 PF07426 Dynactin_p22: Dynacti 29.4 63 0.0014 23.1 2.8 18 30-47 4-21 (174)
362 PF05546 She9_MDM33: She9 / Md 29.3 67 0.0015 24.3 3.0 28 31-58 32-59 (207)
363 PF10975 DUF2802: Protein of u 29.3 1.1E+02 0.0024 18.9 3.6 23 29-51 3-25 (70)
364 PRK13848 conjugal transfer pro 29.2 75 0.0016 22.0 3.0 19 28-46 7-25 (98)
365 TIGR02977 phageshock_pspA phag 29.2 1.9E+02 0.0041 20.6 5.2 27 29-55 111-137 (219)
366 PF05529 Bap31: B-cell recepto 28.8 1.4E+02 0.0031 20.5 4.4 22 30-51 160-181 (192)
367 PRK05560 DNA gyrase subunit A; 28.7 1.7E+02 0.0036 25.4 5.6 38 15-52 414-451 (805)
368 KOG2397|consensus 28.7 1.1E+02 0.0023 26.0 4.4 28 28-55 341-368 (480)
369 PF10112 Halogen_Hydrol: 5-bro 28.7 73 0.0016 22.1 2.9 32 30-61 67-98 (199)
370 cd04770 HTH_HMRTR Helix-Turn-H 28.7 1.6E+02 0.0034 18.7 4.3 27 33-59 81-107 (123)
371 PRK09631 DNA topoisomerase IV 28.6 1.6E+02 0.0034 25.5 5.4 42 12-53 385-426 (635)
372 cd04782 HTH_BltR Helix-Turn-He 28.6 89 0.0019 19.5 3.1 20 33-52 76-95 (97)
373 PF11382 DUF3186: Protein of u 28.3 1.1E+02 0.0023 23.4 3.9 32 28-62 43-74 (308)
374 PF04124 Dor1: Dor1-like famil 28.2 1.2E+02 0.0025 23.0 4.1 25 30-54 13-37 (338)
375 cd01596 Aspartase_like asparta 28.2 1.9E+02 0.0042 23.2 5.6 38 18-55 137-174 (450)
376 PF11932 DUF3450: Protein of u 28.1 1.3E+02 0.0029 21.6 4.3 26 32-57 43-68 (251)
377 KOG4643|consensus 28.0 1.1E+02 0.0023 28.9 4.5 36 29-64 313-348 (1195)
378 PF03449 GreA_GreB_N: Transcri 27.8 1.3E+02 0.0029 18.7 3.8 21 28-48 50-70 (74)
379 PRK12273 aspA aspartate ammoni 27.8 2E+02 0.0043 23.2 5.6 37 18-54 144-180 (472)
380 COG1730 GIM5 Predicted prefold 27.5 1.6E+02 0.0034 20.9 4.4 23 35-57 112-134 (145)
381 PF02994 Transposase_22: L1 tr 27.4 1.5E+02 0.0033 23.2 4.7 29 28-56 141-169 (370)
382 PF10212 TTKRSYEDQ: Predicted 27.2 1.5E+02 0.0034 25.3 5.1 36 21-56 292-327 (518)
383 PRK02186 argininosuccinate lya 27.0 1.9E+02 0.0041 24.8 5.6 38 18-55 517-554 (887)
384 PLN02848 adenylosuccinate lyas 26.9 2E+02 0.0044 23.3 5.5 38 18-55 127-165 (458)
385 PF10473 CENP-F_leu_zip: Leuci 26.9 1.8E+02 0.004 20.4 4.7 34 27-60 76-109 (140)
386 PF05483 SCP-1: Synaptonemal c 26.8 1.8E+02 0.004 26.3 5.6 43 22-64 585-627 (786)
387 TIGR00839 aspA aspartate ammon 26.8 1.9E+02 0.0041 23.5 5.3 38 18-55 140-177 (468)
388 PF11853 DUF3373: Protein of u 26.8 43 0.00093 28.2 1.7 28 25-52 32-59 (489)
389 PF13879 KIAA1430: KIAA1430 ho 26.6 70 0.0015 19.3 2.3 14 45-58 36-49 (98)
390 cd07615 BAR_Endophilin_A3 The 26.5 88 0.0019 23.5 3.2 30 17-46 143-172 (223)
391 TIGR00838 argH argininosuccina 26.5 2.2E+02 0.0047 22.6 5.5 38 18-55 108-145 (455)
392 COG1938 Archaeal enzymes of AT 26.5 1.1E+02 0.0024 23.6 3.8 22 30-51 210-231 (244)
393 PF08202 MIS13: Mis12-Mtw1 pro 26.5 91 0.002 23.6 3.3 27 35-61 161-187 (301)
394 PRK10698 phage shock protein P 26.4 2.2E+02 0.0048 20.7 5.2 32 28-59 110-141 (222)
395 PF05075 DUF684: Protein of un 26.4 78 0.0017 24.3 3.0 33 31-63 2-41 (345)
396 PF10552 ORF6C: ORF6C domain; 26.3 1.2E+02 0.0025 19.8 3.4 21 31-51 8-28 (116)
397 PF09789 DUF2353: Uncharacteri 26.1 93 0.002 24.8 3.4 30 33-62 191-220 (319)
398 TIGR01554 major_cap_HK97 phage 26.1 2.4E+02 0.0052 21.2 5.5 21 34-54 30-50 (378)
399 cd01107 HTH_BmrR Helix-Turn-He 26.1 1.8E+02 0.0039 18.4 4.4 29 31-59 75-103 (108)
400 PF08644 SPT16: FACT complex s 26.0 1.2E+02 0.0027 21.5 3.8 38 33-70 80-117 (152)
401 TIGR02044 CueR Cu(I)-responsiv 26.0 1.8E+02 0.004 18.8 4.3 27 34-60 82-108 (127)
402 cd04785 HTH_CadR-PbrR-like Hel 25.9 1.9E+02 0.0042 18.8 5.0 29 33-61 81-109 (126)
403 PF12999 PRKCSH-like: Glucosid 25.8 1.9E+02 0.0041 21.3 4.8 18 34-51 156-173 (176)
404 PRK03992 proteasome-activating 25.7 2.3E+02 0.0051 21.8 5.5 29 30-58 14-42 (389)
405 PRK10363 cpxP periplasmic repr 25.7 2.1E+02 0.0046 20.9 5.0 26 44-70 108-133 (166)
406 PRK08084 DNA replication initi 25.7 56 0.0012 23.1 1.9 13 22-34 58-70 (235)
407 PRK03992 proteasome-activating 25.4 2E+02 0.0043 22.2 5.0 30 30-59 21-50 (389)
408 PF14389 Lzipper-MIP1: Leucine 25.3 1.6E+02 0.0034 18.8 3.8 21 31-51 61-81 (88)
409 PF10482 CtIP_N: Tumour-suppre 25.2 1E+02 0.0022 22.0 3.1 20 40-59 98-117 (120)
410 PF05700 BCAS2: Breast carcino 25.2 2.7E+02 0.0058 20.1 6.8 37 23-59 167-203 (221)
411 cd00592 HTH_MerR-like Helix-Tu 25.0 1.7E+02 0.0036 17.7 3.9 22 30-51 76-97 (100)
412 PF05308 Mito_fiss_reg: Mitoch 25.0 89 0.0019 23.8 3.0 19 43-61 120-138 (253)
413 PRK14163 heat shock protein Gr 25.0 1.1E+02 0.0024 23.0 3.5 28 33-62 42-69 (214)
414 cd01109 HTH_YyaN Helix-Turn-He 25.0 1.9E+02 0.0041 18.3 4.9 28 31-58 79-106 (113)
415 TIGR02976 phageshock_pspB phag 25.0 1.6E+02 0.0035 18.7 3.8 20 33-52 44-63 (75)
416 TIGR01797 CM_P_1 chorismate mu 24.9 1.7E+02 0.0038 17.9 5.0 32 28-59 3-34 (83)
417 PRK00783 DNA-directed RNA poly 24.9 1.1E+02 0.0023 22.3 3.3 23 28-50 240-262 (263)
418 PF07888 CALCOCO1: Calcium bin 24.9 1.5E+02 0.0032 25.4 4.6 32 29-60 281-312 (546)
419 PF11336 DUF3138: Protein of u 24.9 1E+02 0.0023 26.5 3.7 23 31-53 25-47 (514)
420 KOG2010|consensus 24.9 65 0.0014 26.9 2.4 31 19-53 139-169 (405)
421 PF12761 End3: Actin cytoskele 24.8 1.8E+02 0.004 21.8 4.6 27 28-54 164-190 (195)
422 PF10271 Tmp39: Putative trans 24.8 48 0.001 27.3 1.7 13 27-39 213-225 (423)
423 PF05911 DUF869: Plant protein 24.8 1.3E+02 0.0029 26.5 4.4 28 34-61 179-206 (769)
424 PRK14150 heat shock protein Gr 24.8 1.2E+02 0.0027 21.9 3.6 13 31-43 41-53 (193)
425 PRK14144 heat shock protein Gr 24.5 1.2E+02 0.0026 22.5 3.6 30 32-63 46-75 (199)
426 PRK06705 argininosuccinate lya 24.4 2.5E+02 0.0053 23.0 5.6 37 18-54 117-153 (502)
427 PF14591 AF0941-like: AF0941-l 24.4 1E+02 0.0022 22.1 3.1 44 9-57 55-98 (127)
428 PF05698 Trigger_C: Bacterial 24.3 2E+02 0.0042 18.2 4.4 25 33-57 2-26 (162)
429 PF14584 DUF4446: Protein of u 24.3 1.7E+02 0.0036 20.6 4.1 26 29-54 51-76 (151)
430 KOG0483|consensus 24.2 1.3E+02 0.0027 22.3 3.6 32 31-62 112-143 (198)
431 PF00521 DNA_topoisoIV: DNA gy 24.2 1.3E+02 0.0029 23.7 3.9 23 30-52 390-412 (426)
432 cd04783 HTH_MerR1 Helix-Turn-H 24.1 1.9E+02 0.0042 18.6 4.2 27 33-59 79-105 (126)
433 TIGR01010 BexC_CtrB_KpsE polys 24.0 98 0.0021 23.1 3.0 28 30-57 176-203 (362)
434 COG1422 Predicted membrane pro 24.0 1.4E+02 0.0029 22.7 3.8 26 30-55 71-96 (201)
435 PF12443 AKNA: AT-hook-contain 24.0 1.3E+02 0.0028 20.7 3.4 24 30-53 51-74 (106)
436 COG0593 DnaA ATPase involved i 24.0 61 0.0013 26.4 2.1 17 20-36 124-140 (408)
437 TIGR00979 fumC_II fumarate hyd 23.9 2.2E+02 0.0047 23.0 5.2 37 18-54 138-175 (458)
438 PF10737 GerPC: Spore germinat 23.9 78 0.0017 23.2 2.5 21 40-60 1-21 (176)
439 cd04786 HTH_MerR-like_sg7 Heli 23.8 2E+02 0.0044 19.2 4.3 27 33-59 80-106 (131)
440 KOG2991|consensus 23.7 1.3E+02 0.0028 24.5 3.9 41 26-66 266-313 (330)
441 COG3599 DivIVA Cell division i 23.7 1.6E+02 0.0035 21.9 4.1 18 31-48 44-61 (212)
442 cd04777 HTH_MerR-like_sg1 Heli 23.7 1.3E+02 0.0029 18.8 3.2 21 33-53 83-103 (107)
443 KOG3584|consensus 23.7 1.2E+02 0.0025 25.0 3.6 30 28-57 302-331 (348)
444 KOG1333|consensus 23.5 87 0.0019 24.6 2.8 26 28-53 187-212 (241)
445 PF06632 XRCC4: DNA double-str 23.5 2.5E+02 0.0054 22.3 5.4 26 34-59 133-158 (342)
446 PF03962 Mnd1: Mnd1 family; I 23.4 2.7E+02 0.0059 19.9 5.1 7 62-68 133-139 (188)
447 KOG0930|consensus 23.3 88 0.0019 26.0 2.9 37 15-52 14-52 (395)
448 KOG0241|consensus 23.3 1.1E+02 0.0023 29.5 3.7 14 29-42 369-382 (1714)
449 PRK06835 DNA replication prote 23.3 1.4E+02 0.003 23.0 3.8 25 30-54 64-88 (329)
450 PF05565 Sipho_Gp157: Siphovir 23.2 2.2E+02 0.0048 19.6 4.5 33 30-62 53-85 (162)
451 KOG4301|consensus 23.1 1.4E+02 0.0031 25.1 4.1 26 33-58 406-431 (434)
452 COG0172 SerS Seryl-tRNA synthe 23.0 1.6E+02 0.0034 24.4 4.3 33 27-59 71-103 (429)
453 KOG4797|consensus 23.0 1.5E+02 0.0033 21.2 3.7 23 37-59 66-88 (123)
454 TIGR01808 CM_M_hiGC-arch monof 22.9 1.9E+02 0.0042 17.7 5.2 33 28-60 4-36 (74)
455 smart00224 GGL G protein gamma 22.9 72 0.0016 19.2 1.8 15 28-42 3-17 (63)
456 PF07058 Myosin_HC-like: Myosi 22.9 92 0.002 25.6 2.9 27 33-59 2-28 (351)
457 PF08961 DUF1875: Domain of un 22.8 28 0.00061 27.3 0.0 17 38-54 129-145 (243)
458 PRK06722 exonuclease; Provisio 22.7 1.9E+02 0.0042 22.1 4.5 32 15-50 247-278 (281)
459 PF08172 CASP_C: CASP C termin 22.6 1.9E+02 0.0042 21.8 4.4 24 31-54 100-123 (248)
460 PRK10325 heat shock protein Gr 22.6 95 0.0021 22.6 2.7 8 54-61 60-67 (197)
461 PF05130 FlgN: FlgN protein; 22.4 1.9E+02 0.0042 17.5 4.2 27 31-57 84-110 (143)
462 PRK12750 cpxP periplasmic repr 22.4 1.8E+02 0.0039 20.6 4.0 20 50-70 127-146 (170)
463 PF06667 PspB: Phage shock pro 22.3 2E+02 0.0042 18.5 3.8 22 31-52 42-63 (75)
464 TIGR03573 WbuX N-acetyl sugar 22.3 62 0.0013 24.6 1.7 19 5-23 296-314 (343)
465 PF10211 Ax_dynein_light: Axon 22.3 3E+02 0.0065 19.6 6.8 30 27-56 123-152 (189)
466 PRK03947 prefoldin subunit alp 22.2 2.4E+02 0.0051 18.4 5.0 37 15-52 93-129 (140)
467 PF13015 PRKCSH_1: Glucosidase 22.2 1.6E+02 0.0034 20.7 3.7 24 30-53 2-25 (154)
468 PF09440 eIF3_N: eIF3 subunit 22.1 2.7E+02 0.0058 19.2 4.7 38 34-71 65-103 (133)
469 PF12240 Angiomotin_C: Angiomo 22.1 1.5E+02 0.0033 22.6 3.7 25 32-56 58-82 (205)
470 cd04790 HTH_Cfa-like_unk Helix 22.1 2E+02 0.0044 20.0 4.2 28 33-60 76-103 (172)
471 PF02370 M: M protein repeat; 22.1 1.3E+02 0.0029 15.5 3.0 18 41-58 4-21 (21)
472 PF11803 UXS1_N: UDP-glucurona 22.0 1.1E+02 0.0025 20.3 2.8 19 30-48 56-74 (78)
473 KOG0946|consensus 22.0 1.6E+02 0.0036 27.1 4.5 34 28-61 682-715 (970)
474 PRK14979 DNA-directed RNA poly 21.9 1.2E+02 0.0025 22.3 3.1 25 28-52 167-191 (195)
475 PRK10803 tol-pal system protei 21.8 2.4E+02 0.0052 20.9 4.7 26 28-53 65-90 (263)
476 KOG1962|consensus 21.8 1.6E+02 0.0034 22.4 3.8 25 34-58 182-206 (216)
477 TIGR03495 phage_LysB phage lys 21.7 2.4E+02 0.0053 19.8 4.5 35 28-62 65-99 (135)
478 cd01106 HTH_TipAL-Mta Helix-Tu 21.7 2.1E+02 0.0046 17.7 5.4 29 30-58 72-100 (103)
479 TIGR01807 CM_P2 chorismate mut 21.6 2E+02 0.0043 17.3 5.2 33 28-60 3-35 (76)
480 PF03961 DUF342: Protein of un 21.5 2.4E+02 0.0052 22.1 4.9 32 28-59 331-362 (451)
481 cd04773 HTH_TioE_rpt2 Second H 21.5 2.3E+02 0.005 18.0 4.1 24 29-52 83-106 (108)
482 KOG3000|consensus 21.4 1.8E+02 0.0038 23.0 4.1 32 30-61 197-228 (295)
483 PF07889 DUF1664: Protein of u 21.4 2E+02 0.0044 19.9 4.0 26 27-52 92-117 (126)
484 TIGR03142 cytochro_ccmI cytoch 21.4 2.4E+02 0.0053 18.3 4.7 31 32-62 37-79 (117)
485 KOG3119|consensus 21.3 1.7E+02 0.0038 21.9 4.0 24 34-57 218-241 (269)
486 KOG3828|consensus 21.3 2.3E+02 0.005 24.1 5.0 12 29-40 232-243 (457)
487 PF05278 PEARLI-4: Arabidopsis 21.2 2.1E+02 0.0046 22.4 4.5 29 31-59 221-249 (269)
488 KOG1029|consensus 21.2 1.6E+02 0.0034 27.5 4.2 29 30-58 485-513 (1118)
489 KOG1319|consensus 21.1 4.1E+02 0.0089 20.8 6.3 44 30-73 111-155 (229)
490 PF00831 Ribosomal_L29: Riboso 21.1 1.9E+02 0.0041 16.9 3.9 30 33-63 9-38 (58)
491 PRK09467 envZ osmolarity senso 21.0 2.7E+02 0.0058 20.1 4.7 30 30-59 205-234 (435)
492 PF13334 DUF4094: Domain of un 20.9 2.6E+02 0.0055 18.3 4.3 28 31-58 66-93 (95)
493 COG3750 Uncharacterized protei 20.9 2E+02 0.0044 19.5 3.8 21 37-57 13-33 (85)
494 PF03836 RasGAP_C: RasGAP C-te 20.7 33 0.00071 23.1 0.0 46 16-61 35-81 (142)
495 TIGR01803 CM-like chorismate m 20.7 2.2E+02 0.0047 17.4 4.9 33 28-60 3-35 (82)
496 TIGR01554 major_cap_HK97 phage 20.6 2.4E+02 0.0053 21.2 4.6 29 31-59 27-55 (378)
497 PRK11147 ABC transporter ATPas 20.6 2E+02 0.0043 23.5 4.3 27 27-53 564-590 (635)
498 PF09388 SpoOE-like: Spo0E lik 20.5 1.7E+02 0.0037 16.2 3.5 28 36-67 2-29 (45)
499 PRK11020 hypothetical protein; 20.4 1.7E+02 0.0036 20.8 3.5 36 34-69 1-36 (118)
500 PHA02698 hypothetical protein; 20.3 1.8E+02 0.0039 19.8 3.5 39 9-48 47-86 (89)
No 1
>KOG4797|consensus
Probab=100.00 E-value=5.7e-34 Score=198.80 Aligned_cols=63 Identities=59% Similarity=0.723 Sum_probs=60.2
Q ss_pred cccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCCCCC
Q psy8521 11 RLAD--LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPN 73 (75)
Q Consensus 11 ~i~~--~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~ 73 (75)
-||| +|||||||+|||||||||||+||+||+||++||++||+||++||.++|||||+||+++-
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQL 109 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhc
Confidence 4788 89999999999999999999999999999999999999999999999999999998763
No 2
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=99.97 E-value=1.6e-33 Score=176.72 Aligned_cols=56 Identities=66% Similarity=0.847 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCCCCC
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPN 73 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~ 73 (75)
|||||||||||||||||+||++|+||++||++||.||++||+++|||+++|++++-
T Consensus 1 MdLVKtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q~~~~~ 56 (59)
T PF01166_consen 1 MDLVKTHLMYAVREEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQLQSQQ 56 (59)
T ss_dssp --SCCCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTTSSSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999864
No 3
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=96.58 E-value=0.012 Score=39.54 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-hhcCC
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQET-LGQLP 70 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~-l~q~~ 70 (75)
.+| +|-||.| |.||-+.|+.+|+++++.|.+|..|=+-+|.-..+.. .+..+
T Consensus 3 ~ae-LR~qLqF-vEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~ 55 (96)
T PF11365_consen 3 SAE-LRRQLQF-VEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLS 55 (96)
T ss_pred HHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCC
Confidence 344 4889999 5899999999999999999999999999998775443 44443
No 4
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.54 E-value=0.0047 Score=41.47 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
++-+-.++. +.-++++.||.+|.+|.+.|..|..||.-||......
T Consensus 10 l~~le~~l~-~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 10 LDQLEQQLG-QLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443 4557999999999999999999999999999886543
No 5
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.46 E-value=0.0085 Score=40.78 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
+.-+|++.||.+|.+|++.|..|+.||.-||.....
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999988765
No 6
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=94.92 E-value=0.11 Score=30.39 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhc
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQ 68 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 68 (75)
.+..+.|+..|+.+|+++..++.+|+.|-..|+. +|+-+++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--~~~~ie~ 59 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN--DPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 4567889999999999999999999999888844 6766654
No 7
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.72 E-value=0.13 Score=32.61 Aligned_cols=32 Identities=44% Similarity=0.418 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.+.||+.||++-..|.+.+..|+.||.-||.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888874
No 8
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=94.34 E-value=0.09 Score=39.58 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-.=++|.||..--.++++|+.|...|-.||..||.++.
T Consensus 102 ta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 102 TASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34479999999999999999999999999999998863
No 9
>smart00338 BRLZ basic region leucin zipper.
Probab=93.99 E-value=0.38 Score=28.39 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-+-....+|+.|..+..+|..+++.|+.|+..|+...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567888899999999999999999999888753
No 10
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.91 E-value=0.12 Score=32.78 Aligned_cols=29 Identities=31% Similarity=0.612 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
|+..|-.+|..|..+..+|..||..||+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q 29 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQ 29 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999874
No 11
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=93.80 E-value=0.2 Score=36.17 Aligned_cols=37 Identities=43% Similarity=0.601 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCC
Q psy8521 26 MFAVREEVEVLKEKIAELMERIN---QLEMENSILKANAT 62 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~---~LE~EN~~Lk~~as 62 (75)
...+++|-+.||+++++|..++. +++.||.-||.+..
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999998888 67899999998653
No 12
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=93.57 E-value=0.18 Score=32.92 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+...+++.|++|..++.+|+.||.+||..+
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999765
No 13
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=93.43 E-value=0.39 Score=28.93 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhc
Q psy8521 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQ 68 (75)
Q Consensus 22 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 68 (75)
-.|..+....++..++.+|+++..++.+|+.|-+-|. +|+-+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~---~~~rIe~ 65 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS---RHERIEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHH
Confidence 3577788889999999999999999999999987665 4665554
No 14
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=92.71 E-value=0.13 Score=27.38 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQ 49 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~ 49 (75)
+|++-||.+|.+|+.+.+.
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4899999999999987653
No 15
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=92.67 E-value=0.5 Score=27.35 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
..++.|..++.+|...|.+|+.++..|+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666554
No 16
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=92.62 E-value=0.15 Score=35.04 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|+-.||.++..|+|.|+-|..++.+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665555555555555554444
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.32 E-value=0.45 Score=30.08 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+-+..|+..|.+|.++|..|..||.-|+.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45667777777777777777777777764
No 18
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=92.16 E-value=0.27 Score=30.99 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
.=|||.|++++-+..+.+|+..||..
T Consensus 47 VtREEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 47 VTREEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888755555555555555543
No 19
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=91.15 E-value=1.7 Score=27.80 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=38.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 12 LADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 12 i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
++...+-.++.+||+=+-.++.+.|+.++.++...|.+|..+=.-+|
T Consensus 61 ~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 61 RHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778999999999999999999999999999998887765544
No 20
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.93 E-value=0.39 Score=33.81 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
-.|+..||.++.+|++.|..|..||.-||.-.+..+
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~ 56 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRERLGEPT 56 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCcc
Confidence 358999999999999999999999999998766533
No 21
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.84 E-value=0.76 Score=34.54 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERIN----QLEMENSILKANAT 62 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~----~LE~EN~~Lk~~as 62 (75)
.+++|=+.||+++.+|..+.. .|+.||.-||.+..
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999988844443 38999999998654
No 22
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=90.80 E-value=0.16 Score=33.98 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.-|.++-++||+.|+.+|.+|+.++.+|+.
T Consensus 88 ~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 88 NRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678889999999999999999998863
No 23
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=90.36 E-value=1.1 Score=29.27 Aligned_cols=41 Identities=44% Similarity=0.620 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HH-HhcCCHHHhhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEM-----ENS----IL-KANATQETLGQL 69 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~-----EN~----~L-k~~aspE~l~q~ 69 (75)
++.|++--|++|+++..|+..||. ||. +. ....||++|+.|
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~ 56 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAF 56 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 578899999999999999998864 554 22 346899999876
No 24
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.30 E-value=0.55 Score=30.82 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcC
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQL 69 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 69 (75)
.||=|++++.|.+++.+...|++++|++ ++.+-+.+.+.++
T Consensus 30 ~~a~~~~~~~l~~~~~~~~~Rl~~lE~~---l~~LPt~~dv~~L 70 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEHDRRLQALETK---LEHLPTRDDVHDL 70 (106)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHH
Confidence 5899999999999999999999999987 4455555555443
No 25
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.98 E-value=1.2 Score=29.48 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
....+.+++.++.++++|..+|.+|+.|-..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456788888888888999999999888888886
No 26
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=89.56 E-value=1 Score=32.93 Aligned_cols=35 Identities=31% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..=+++.|-+.|++++.+|..+|.+|+.||.-|+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888887754
No 27
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.28 E-value=1.5 Score=31.74 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 22 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
..-++-|=.-.+-.|+.+|.+|..++..|..||.+||.+--
T Consensus 3 ~~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~ 43 (194)
T PF15619_consen 3 TQRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQK 43 (194)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677778899999999999999999999999998643
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.73 E-value=1.1 Score=29.72 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+..|+=.|.||.++|.+|..|+.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 29
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.09 E-value=1.2 Score=28.19 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.|+.-|++..+= .+.++|..|..+...|+.||+.|+.
T Consensus 60 ~aL~~VR~rK~~-------~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 60 SALKRVRSRKDQ-------LLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544 5556666666666667777777764
No 30
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.07 E-value=2.2 Score=33.14 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-++||+++-.|+..+||..|++.|..|.++..+.+..=+.|..
T Consensus 310 ~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 310 NVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999988876555543
No 31
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=87.88 E-value=1.2 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
=+--|..+.+|+.++..|+.||..|+.-
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888888888653
No 32
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=87.61 E-value=0.66 Score=31.28 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+..+|....+++|.+|-.|+-+|+.||.+|
T Consensus 66 ~l~~eLk~a~~qi~~Ls~kv~eLq~ENRvl 95 (96)
T PF11365_consen 66 ELQEELKLAREQINELSGKVMELQYENRVL 95 (96)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccccc
Confidence 456666777788888888888899999743
No 33
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=87.46 E-value=1.9 Score=28.09 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+.+.-.+.|-.+|.+..+.+.+|+.||.+|...+
T Consensus 26 ~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 26 LELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888889999999987654
No 34
>PF14645 Chibby: Chibby family
Probab=87.20 E-value=0.87 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+++..|+++++.|++.|+.|..++.+|=.
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLlD 99 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLLD 99 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888888888888877743
No 35
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.92 E-value=2.2 Score=24.83 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
....++.+|.+|..++.+++.||.-|+.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777754
No 36
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.12 E-value=1.5 Score=36.29 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
-.+|.|+|=+-||..|.+|..++.+| ||+.+|.++..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E 69 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCE 69 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhh
Confidence 46899999999999999999999999 78888766543
No 37
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=85.85 E-value=5.2 Score=23.47 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
++.|..++..|...|..|..++..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 38
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.57 E-value=4.1 Score=28.56 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 21 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|....=.+..|...|.-+..-+++++..|+.||.-|
T Consensus 141 ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 141 EKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888888888888999999998755
No 39
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.50 E-value=4.8 Score=25.47 Aligned_cols=29 Identities=45% Similarity=0.571 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 22 KSHLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 22 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
|.+++. ++++.|+.+...|.+.|..|..+
T Consensus 69 K~~~l~---~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 69 KDQLLM---EQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 57888999999999999888754
No 40
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.45 E-value=2.3 Score=28.05 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
....++.+|.++..++.+|+.+|.-|+.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999998888753
No 41
>PF14645 Chibby: Chibby family
Probab=85.25 E-value=2.1 Score=29.02 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.=+.+||-..||=+|.-|.+=..+-..|..++
T Consensus 80 n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 80 NQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555555554444
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.84 E-value=5.1 Score=27.23 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQETLG 67 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 67 (75)
+.-.|+..|++++.+|...++.|+.|-+-|++..|.+++.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~ 115 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELR 115 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3445677777777777777777777777777777766654
No 43
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.58 E-value=2.3 Score=28.38 Aligned_cols=30 Identities=40% Similarity=0.407 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIA-------ELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~-------eL~er~~~LE~EN~~Lk~ 59 (75)
.=|||.|||+-. ++......|++||.-||+
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888755 445556678888887775
No 44
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=84.50 E-value=2.5 Score=31.92 Aligned_cols=35 Identities=40% Similarity=0.394 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCH
Q psy8521 29 VREEVEVLKEKIAELM---ERINQLEMENSILKANATQ 63 (75)
Q Consensus 29 VREEVEvLKe~I~eL~---er~~~LE~EN~~Lk~~asp 63 (75)
...|-+.||++++++. .++.+||.||.-||.+..-
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567788888887665 5678899999999987653
No 45
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=84.33 E-value=3.1 Score=26.16 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.+-||||...=-=|.++.+.-++++|..|+.|+..||.
T Consensus 41 l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 41 LSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35699999888889999999999999999999999984
No 46
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=84.30 E-value=0.67 Score=27.01 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-.+.-+|.+|+.++++|..||-.||..+
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999754
No 47
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=83.98 E-value=2.7 Score=28.70 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcCCHHHhhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSI--------LKANATQETLGQLP 70 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~--------Lk~~aspE~l~q~~ 70 (75)
.+.++++.+.++|++|+.+..+|+.=-.. ++..+||+-++.++
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 128 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELSQQVLTLIQ 128 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHhHHHHH
Confidence 57778888888888888888877543333 35567787776554
No 48
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=83.88 E-value=3 Score=33.14 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQL---EMENSILKANAT 62 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~L---E~EN~~Lk~~as 62 (75)
.|.+++|=+.||+++.+|..++.++ ..||..|+...+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4889999999999999998777664 489999887654
No 49
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=2 Score=29.85 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 20 LVKSHLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 20 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
-+-+-+..|-+-|++.|+++|..|++++..||.+
T Consensus 72 ~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 72 EMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777788888888888888888888755
No 50
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.04 E-value=2.8 Score=32.55 Aligned_cols=32 Identities=47% Similarity=0.664 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 19 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 19 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
|==|+-|+| +||.||.++.++++.+.++..|+
T Consensus 104 DNek~~l~y----qvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 104 DNEKSALMY----QVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred chHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777787 78999999999999999999886
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.89 E-value=4.4 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
=+.++|...|+++++.|+.++..|+.+...+..
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999998887754
No 52
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=81.83 E-value=4.7 Score=25.21 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+++..|+++|++|+++...++.+...++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777788888888877777777776664
No 53
>KOG3634|consensus
Probab=81.63 E-value=2.5 Score=34.55 Aligned_cols=34 Identities=44% Similarity=0.638 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEV--------EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 21 VKsHLm~AVREEV--------EvLKe~I~eL~er~~~LE~EN 54 (75)
-|.-.+.|+|.++ +.||++|++|-.+|-+||.|-
T Consensus 212 akk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EK 253 (361)
T KOG3634|consen 212 AKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEK 253 (361)
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556789999987 679999999999999999874
No 54
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=81.59 E-value=7.4 Score=24.17 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
....-|++.++.++..|.+.+.+|..|-+-|.+..
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~ 72 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLSSPS 72 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 33445677777777777777777777766665433
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=81.41 E-value=6.2 Score=23.12 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 37 KEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+..|.+|+.++..|+.||.-|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655554
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.41 E-value=4.4 Score=29.26 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+++...|-.+.+.-++|+..||.+|..|..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~ 32 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLES 32 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 567888999999999999999999999874
No 57
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.21 E-value=4.2 Score=26.97 Aligned_cols=31 Identities=42% Similarity=0.530 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQ-------LEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~-------LE~EN~~Lk~ 59 (75)
.+-|||.||++=..|.+.+.. |++||.-||+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356999999998888887665 8888887775
No 58
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.59 E-value=5.5 Score=23.20 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+-++||..-..|...+..|..||.-|+.-
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999888763
No 59
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.58 E-value=9.4 Score=27.26 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 18 SDLVKSHLMFAVREEVE------VLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 18 MDLVKsHLm~AVREEVE------vLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..|.++...|++|.-.+ .++.+|++|...+.+|+.+-.-|+..
T Consensus 101 ~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 101 QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888887544 45666666666666666665555544
No 60
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=79.16 E-value=3.7 Score=25.52 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN 54 (75)
|+.|.++|+-|+..+..+|.+-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888877664
No 61
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.79 E-value=5.2 Score=27.19 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy8521 46 RINQLEMENSI 56 (75)
Q Consensus 46 r~~~LE~EN~~ 56 (75)
.+.+|+.|+.-
T Consensus 117 ~i~~l~~e~~~ 127 (169)
T PF07106_consen 117 EIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 62
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.78 E-value=8.8 Score=24.12 Aligned_cols=29 Identities=45% Similarity=0.585 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..+|+..+|++|++++.+...++.+-.-+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888775443
No 63
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=77.66 E-value=5.2 Score=29.46 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
-.++|+|.|+++|+.|+.-.+.+-++-+.++...+.+
T Consensus 76 ~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qe 112 (157)
T COG3352 76 DIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQE 112 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHH
Confidence 3689999999999999999998888888888776654
No 64
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=77.20 E-value=6.3 Score=27.07 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8521 40 IAELMERINQLEMENSILKA 59 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~ 59 (75)
...|..++.+||.||++||-
T Consensus 74 ~~rlkkk~~~LeEENNlLkl 93 (108)
T cd07429 74 VLRLKKKNQQLEEENNLLKL 93 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567799999999999984
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.09 E-value=7.9 Score=28.40 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
++..+.+|.+|.++|.+|..|...++
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 66
>KOG4343|consensus
Probab=75.98 E-value=4.9 Score=35.01 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
|-++-|+.+|.+|...|.+|..||..||.
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~ 330 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKR 330 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56888999999999999999999999986
No 67
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.59 E-value=10 Score=23.02 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.-+++.+...+.++++++++++.||.=+..+..
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~ 34 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEK 34 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999998888888877666543
No 68
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=75.30 E-value=16 Score=22.70 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHhhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILK----ANATQETLGQL 69 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk----~~aspE~l~q~ 69 (75)
.++-+.-.+-.++..++.+..+|+.||.-|+ .+.+|+.++++
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~i 77 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERI 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3455666777889999999999999999987 46777776654
No 69
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.17 E-value=4.7 Score=28.24 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy8521 39 KIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
...||..++.+|+.||.-||.-
T Consensus 4 t~EeLaaeL~kLqmENk~LKkk 25 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKK 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999863
No 70
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=75.16 E-value=15 Score=21.94 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+-..-.+..+|..++.++.+++.||.-|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668888999999999999999999885
No 71
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.11 E-value=7.7 Score=25.80 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
=..|...|.++..|+..|...|++|-.
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888753
No 72
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=75.10 E-value=4.3 Score=29.22 Aligned_cols=22 Identities=41% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy8521 40 IAELMERINQLEMENSILKANA 61 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..+..+++.+|+.||.-||.+.
T Consensus 155 ~~~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 155 SQEEQEIIAQLETENKGLRELL 176 (181)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999865
No 73
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=74.97 E-value=12 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+..++..|+..+.+|..|+...+.||.-|++
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888999999999988875
No 74
>KOG4005|consensus
Probab=74.90 E-value=5.7 Score=31.69 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.+.-+|++|.++|..|..||..||.
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777764
No 75
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.79 E-value=12 Score=23.35 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+-.-.++.+....+.+|..||..|+
T Consensus 36 d~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 36 DSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555554444
No 76
>KOG3119|consensus
Probab=74.04 E-value=10 Score=28.46 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 20 LVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 20 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.-..+=+-|||+.=+.=|.+..+...|+..||.||..||.-+
T Consensus 197 err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v 238 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQV 238 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788998888888888888888888888888888654
No 77
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=72.48 E-value=6.2 Score=28.31 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~ 52 (75)
=|.|.|.+..+|..|+.++.++|.
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999663
No 78
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.23 E-value=6.6 Score=27.94 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHhhcCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANATQ--ETLGQLP 70 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~asp--E~l~q~~ 70 (75)
|+++...++|..++.+|+.+|.-|...+.. ++...+.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 477778888888888888888887744433 4444443
No 79
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=72.15 E-value=11 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCCCC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHP 72 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~ 72 (75)
+++++.|+.++..+.++..+++.|..-+| +++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 65 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAK-----EEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhCC
Confidence 34444444454444444444444433333 345555443
No 80
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=72.12 E-value=16 Score=27.43 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCHHHhhcCCC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMEN-------SILKANATQETLGQLPH 71 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN-------~~Lk~~aspE~l~q~~~ 71 (75)
-|-..||.+|.+|+.++.+|.... ..|+...++.|+..+..
T Consensus 18 ~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs~~Qi~~lk~ 65 (236)
T PF12017_consen 18 IENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFSEDQIRNLKN 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHhc
Confidence 455666666666666666655433 46788899999987764
No 81
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=72.06 E-value=5.6 Score=27.63 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+.|...-|+||+.|..+|.+|..++..|..
T Consensus 101 ~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 101 NRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666789999999999999999988864
No 82
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=71.24 E-value=19 Score=21.25 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVR----EEVEVLKEKIAELMERINQ 49 (75)
Q Consensus 16 ~AMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~ 49 (75)
+-|+++++-+-=|-. +||..|++..+||...+.+
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 346677777666654 8999999999999887643
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=71.21 E-value=14 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
++.+.|-..|.+|.++|.+|+.+..-++.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555544444443
No 84
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=71.03 E-value=5.7 Score=24.75 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLK---EKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLK---e~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..+.|+.+-+++.-.+.+.++=- .-|-+|.+|+.+|+.|+..||+
T Consensus 37 f~~~~l~rl~~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 37 FSEEDLARLRRIRRLHRDLGINLEGIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred ECHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45667777777777777665433 3467888999999999888874
No 85
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.84 E-value=6.1 Score=22.81 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 35 VLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~L 57 (75)
.+|-+++.+..++.++|.|+.-|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666666666666665543
No 86
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.70 E-value=10 Score=30.17 Aligned_cols=31 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+.++|.+.|.....++.+++..||.||+.|-
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666677777777777664
No 87
>PRK14151 heat shock protein GrpE; Provisional
Probab=70.61 E-value=4.4 Score=29.09 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.++++.|+++++++.++...+..|...+|...-
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555555554433
No 88
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.59 E-value=9.2 Score=32.02 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
|-|++.+..+-.+++.++..||.||.-|+...
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77888888888899999999999999998765
No 89
>PF13974 YebO: YebO-like protein
Probab=70.48 E-value=8.3 Score=25.44 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 36 LKEKIAELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
--|||.=|++=..|-.+.|.+||.+++...
T Consensus 25 ANEQI~LL~~ileqQKrQn~LL~rL~~~~~ 54 (80)
T PF13974_consen 25 ANEQIELLEEILEQQKRQNALLRRLCEANE 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 468888888889999999999999998766
No 90
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=70.37 E-value=6.9 Score=29.81 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
|++.||.||..|-.|+..||.||.-
T Consensus 196 ~~~~lrrQi~klnrRl~~lE~~n~~ 220 (246)
T PF05644_consen 196 DAASLRRQIIKLNRRLQALEEENKE 220 (246)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHH
Confidence 4569999999999999999999963
No 91
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=70.37 E-value=9.2 Score=28.03 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+++...|++++..|...+..|+.++.+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~ 137 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAIT 137 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 92
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=70.20 E-value=15 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-|+.|-.+|..|-.++.||..+-+.||.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888899999999888888875
No 93
>PF15456 Uds1: Up-regulated During Septation
Probab=69.87 E-value=8.2 Score=26.48 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~ 52 (75)
-||||.||.++.-|..|+..+..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~ 43 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRR 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999987764
No 94
>PHA03162 hypothetical protein; Provisional
Probab=69.65 E-value=6.3 Score=28.44 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy8521 40 IAELMERINQLEMENSILKANA 61 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..||..++.+|+.||.-||.-.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998754
No 95
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=69.43 E-value=13 Score=27.91 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
.=||-||++-||.-.+.|++.+.+|-..+.
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~r 91 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQAR 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999887765544443
No 96
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=69.16 E-value=8 Score=26.93 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 20 LVKSHLMFAVREEVEVLKEKIAELMERI 47 (75)
Q Consensus 20 LVKsHLm~AVREEVEvLKe~I~eL~er~ 47 (75)
++..-=|-+.+++|+.|++|+..|+.+.
T Consensus 79 ~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 79 VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666678899999999999999999875
No 97
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=68.84 E-value=16 Score=21.24 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|+.+|..+.++=++.-.+||+-.+-|+..
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 47899999999999999999999988877654
No 98
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=68.63 E-value=8.7 Score=24.31 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
|++|.+.++.++.|--+.+..|..||
T Consensus 43 ~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 43 QKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 78899999999999999999998887
No 99
>KOG0977|consensus
Probab=68.34 E-value=9.7 Score=32.31 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
++|.-.|-.+.+.-++|+..||.||+-|..
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~ 70 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEH 70 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778999999999999999999998753
No 100
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=67.84 E-value=7.6 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+|...|++++...+.+...|..||+
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhh
Confidence 7888888888888888888888886
No 101
>PHA03155 hypothetical protein; Provisional
Probab=67.77 E-value=7.4 Score=27.36 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy8521 40 IAELMERINQLEMENSILKANA 61 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..||..++.+|+.||.-||.-.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999998643
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=67.25 E-value=20 Score=25.92 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..+. ++++|+..+|.+|..|..++..|+..|.-|...
T Consensus 209 ~~~~-~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 209 EELE-SAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-hhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 3344 568888888888888888888888888777653
No 103
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.86 E-value=17 Score=24.41 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+-+..|-++|.+|...+..|..||.-|+-
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777778888888888888873
No 104
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.70 E-value=11 Score=31.50 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-++-.++.++.+|..+|..|..||.-||+
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888888876
No 105
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=66.60 E-value=15 Score=22.42 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
|.-+..+=-.||+++.+ |...+..|+.+|.-||.+.
T Consensus 21 L~~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 21 LENFLKRYNKVLLDRAA-LIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33444555678887755 5556699999999998764
No 106
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=66.40 E-value=9.5 Score=30.27 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
||-+=.-|.+.-|.|||.+-++|.||+.++.+|+.|-.-|+
T Consensus 276 ~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 276 VEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333445677899999999999999999999998854443
No 107
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=66.17 E-value=20 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
|+.||.|+..|+.++..|+.-=+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776644333
No 108
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=65.86 E-value=25 Score=26.05 Aligned_cols=38 Identities=26% Similarity=0.541 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 17 AMDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 54 (75)
-.|.+-|-+++++|+.+ +.|...+.+|.+.+.++-.++
T Consensus 111 s~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~ 149 (312)
T PF00206_consen 111 SNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEH 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999 889999999999999988765
No 109
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.44 E-value=26 Score=25.23 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
++|+||+ .+||+.+|.+.......+..+..||.-|+.
T Consensus 26 L~lIksL-----Keei~emkk~e~~~~k~m~ei~~eN~~L~e 62 (201)
T PF13851_consen 26 LELIKSL-----KEEIAEMKKKEERNEKLMAEISQENKRLSE 62 (201)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555554 578888888888888888888888887764
No 110
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=65.15 E-value=25 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~E 53 (75)
+=.+.|.++++++++++.+|+.|
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44578889999999999999876
No 111
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=64.87 E-value=12 Score=25.37 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+.+.+++++|+.++..|+.+..-+
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665443
No 112
>PRK01203 prefoldin subunit alpha; Provisional
Probab=64.64 E-value=34 Score=23.97 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
|-+|..+++++|..|..++++|+.-.+=+.. +-+.+..+.
T Consensus 5 ~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~--~ie~L~~~~ 44 (130)
T PRK01203 5 VEAQLNYIESLISSVDSQIDSLNKTLSEVQQ--TISFLSDNE 44 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccc
Confidence 5678999999999999999999887766644 555555543
No 113
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=64.19 E-value=11 Score=24.38 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q psy8521 18 SDLVKSHLMFAVREEVEVLKE---KIAELMERINQLEMENSILKA 59 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe---~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.|+..-+.+.-.+.+.++=-+ =|-+|.+++.+|++|+..|++
T Consensus 48 ~~l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~~L~~ 92 (101)
T PRK10265 48 HAAIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENRLLRQ 92 (101)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555443222 245777777778877777776
No 114
>PRK14157 heat shock protein GrpE; Provisional
Probab=63.96 E-value=16 Score=27.69 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
++..+++.|+++|.++.++...+..|...+|.....|.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~ 118 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQ 118 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999888888887665543
No 115
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=63.86 E-value=15 Score=30.41 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 18 SDLVKSHLMF------AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 18 MDLVKsHLm~------AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+..+|..+.- .+.+++..|+.+|.+|+..+..|+.++..|..-
T Consensus 484 ~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 484 LKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp ----------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 356999999999999999999999999999853
No 116
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=63.27 E-value=8.1 Score=23.55 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 41 AELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 41 ~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
.....+++.|+.||..||.-...++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677778888888876554443
No 117
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.81 E-value=23 Score=26.01 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..+|-+.|++++.++..++..|+.||.-++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655553
No 118
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=62.67 E-value=11 Score=31.16 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
--++++..|..||+.|..++++|+..|+
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~~~ 66 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQNN 66 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3478899999999999999999988743
No 119
>KOG4571|consensus
Probab=62.27 E-value=16 Score=29.08 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
+=|+--|.++|-.+=.+|.++.+.||.|-.+||+++-
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888888888888999999999998753
No 120
>PRK14143 heat shock protein GrpE; Provisional
Probab=62.26 E-value=20 Score=27.06 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
...++++.|++++++|.++..++..|...+|.....|.
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~ 108 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQ 108 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999888888877777665544
No 121
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=62.07 E-value=11 Score=28.35 Aligned_cols=36 Identities=36% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
+-+-+|-+.|...|..+.+.+..|..||.-|+.++.
T Consensus 121 ~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 121 EEALEENEKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888888888888754
No 122
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.64 E-value=27 Score=24.35 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
....|+.|+.+|.+|+.++.+++.+-..|+...
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999888887643
No 123
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=61.16 E-value=13 Score=31.21 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 21 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 21 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.-+--..|--.|++.+| ||.+|..++.+|+.+-.-|...
T Consensus 15 ~~s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 15 FLSLPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HhccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccc
Confidence 33333455667888888 8888888888888886644443
No 124
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=61.00 E-value=6.5 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+.+|.+|...+..|...-..|.+.+..|.+||.-|+.-.
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el 45 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGEL 45 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777888888888888887653
No 125
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.74 E-value=17 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+|-.-=|-.|.++.||++.++++.++..-||+-
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~E 115 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRRE 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445777888888888888888777777653
No 126
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=60.11 E-value=24 Score=23.54 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 38 EKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 38 e~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
.+|.+|..++..|..||.-|+.-...
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888899999998888765443
No 127
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=59.74 E-value=5.2 Score=25.40 Aligned_cols=29 Identities=38% Similarity=0.466 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
|..+++.|..++.+|..++..|+.+..-+
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44555555555555555555555444444
No 128
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=59.65 E-value=12 Score=26.43 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELME 45 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~e 45 (75)
+|.+|+-- -+-..|++...|+.++.+|++
T Consensus 40 ~avSL~er-Q~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 40 GAVSLVER-QLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 46666533 233455555555555555554
No 129
>PRK14151 heat shock protein GrpE; Provisional
Probab=59.51 E-value=25 Score=25.27 Aligned_cols=50 Identities=24% Similarity=0.229 Sum_probs=37.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 13 ADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 13 ~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
+++|..||---.-.-|--++++.|+++|.+|++++..+ .+.+||..|.-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~le~e~~el--~d~~lR~~Ae~e 51 (176)
T PRK14151 2 ADEQTLDLQAPEAAQAEAAAGDDLTARVQELEEQLAAA--KDQSLRAAADLQ 51 (176)
T ss_pred CchhhhhhcccccccccccchhhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 35666666666666677788899999999999998866 477888766544
No 130
>PF15058 Speriolin_N: Speriolin N terminus
Probab=59.47 E-value=16 Score=27.79 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHhc
Q psy8521 34 EVLKEKIAELMERINQLE------MENSILKAN 60 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE------~EN~~Lk~~ 60 (75)
|.|++||..|+..|.+|+ +||..||..
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 566777777776666554 688888877
No 131
>PRK10963 hypothetical protein; Provisional
Probab=59.36 E-value=16 Score=26.35 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQL 50 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~L 50 (75)
-++.||++|++|+.++.+|
T Consensus 45 Q~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 45 QMARQRNHIHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655554
No 132
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.17 E-value=14 Score=29.24 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcC
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQL-------EMENSILKANA 61 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~L-------E~EN~~Lk~~a 61 (75)
...++++++..|+++|.+|+++...+ +..-.+|..+.
T Consensus 65 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 65 TSRPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666666555555554 45555555544
No 133
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.98 E-value=33 Score=23.48 Aligned_cols=37 Identities=41% Similarity=0.510 Sum_probs=21.3
Q ss_pred cccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 10 DRLADLGLS-DLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 10 ~~i~~~~AM-DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+.++....| |..++ .++++.|+..|+.|..++..++.
T Consensus 136 ~~~~~P~ll~Dy~~~------~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 136 GLLGVPALLRDYDKT------KEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred CCCCCcHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666 55543 45666666666666666665553
No 134
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=58.82 E-value=20 Score=29.00 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy8521 19 DLVKSHLMFAVREEVEVLKEKIA----ELMERINQLEMENSIL 57 (75)
Q Consensus 19 DLVKsHLm~AVREEVEvLKe~I~----eL~er~~~LE~EN~~L 57 (75)
+|||.- --|.||-||.+++.+ .++.|+++||.+|.++
T Consensus 12 ~li~~l--a~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~ 52 (328)
T PF15369_consen 12 NLIKEL--ARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELI 52 (328)
T ss_pred HHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455542 237788777766665 5788999999999876
No 135
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=58.74 E-value=20 Score=23.74 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..+..++.+...|-.++..|+.|.+.|+.-
T Consensus 57 ~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 57 RQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555666666666666666666554
No 136
>KOG3819|consensus
Probab=58.60 E-value=15 Score=31.29 Aligned_cols=40 Identities=28% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.+-.=+++.||.---.+..+|+.|-..|+.||--||.+|-
T Consensus 131 r~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~ 170 (513)
T KOG3819|consen 131 RQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCH 170 (513)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4556689999999999999999999999999999999874
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.59 E-value=32 Score=26.36 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-+..+|++.|+...++|.+.+..||.|+.-|..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQ 78 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777665543
No 138
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.54 E-value=30 Score=25.52 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
+.|-.|--.---.+-..|++.|+++|.+|.++...+..|...+|...-.|
T Consensus 24 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE 73 (194)
T PRK14153 24 EEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTARE 73 (194)
T ss_pred HHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444566778888899999999888888877777776655443
No 139
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.40 E-value=25 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+-+..+-++|.+|...+..|..||..|+-
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777788888888888763
No 140
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=58.39 E-value=29 Score=24.42 Aligned_cols=29 Identities=41% Similarity=0.693 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+.|++.|+++|..+....++|+.|=..++
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777777777765554
No 141
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=58.26 E-value=18 Score=23.39 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN 54 (75)
|..|.++|+-|.+.+.+|+.|-
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999998874
No 142
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.20 E-value=27 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
...+++.|++++++|.++...+..|...+|.....|
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888777777776666666554443
No 143
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.12 E-value=28 Score=22.13 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.-++..+..|..+...++.||..|..
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~ 101 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAE 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999998865
No 144
>PRK14127 cell division protein GpsB; Provisional
Probab=58.03 E-value=25 Score=23.95 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+-.|...||+++..|.+++.+++..-.
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345777777777777777777776554
No 145
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.01 E-value=32 Score=27.15 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.++++..||++|++|+++...+|.+-.-+-.
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777666544433
No 146
>PRK14161 heat shock protein GrpE; Provisional
Probab=57.52 E-value=25 Score=25.36 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
++|++.|+++++++.++...+..|...+|.....|
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877777776666554443
No 147
>COG3553 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.51 E-value=9.8 Score=26.19 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=16.0
Q ss_pred cchh-HHHHHHHH-HHHHHHHHH
Q psy8521 14 DLGL-SDLVKSHL-MFAVREEVE 34 (75)
Q Consensus 14 ~~~A-MDLVKsHL-m~AVREEVE 34 (75)
|.++ -|.|-+|+ +||-|||..
T Consensus 67 ~lA~le~VVa~Hi~rfafrEel~ 89 (96)
T COG3553 67 NLARLEDVVASHIDRFAFREELA 89 (96)
T ss_pred hHHHHHHHHHHHHHHHHhhHHhh
Confidence 3444 47899998 899999865
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.27 E-value=20 Score=28.38 Aligned_cols=26 Identities=46% Similarity=0.526 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.+.|.++++.|++.|.+|..|-+-|+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999999988888887
No 149
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=57.15 E-value=18 Score=22.03 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
.|-.|+..|--.. -.-||-+-++|++|+.|-..|-
T Consensus 5 EAkelLqe~~d~I-Eqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 5 EAKELLQEHYDNI-EQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----------THH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-HHhHHHHHHHHHHHHHHHHHHH
Confidence 4555555554432 3457788888888888866654
No 150
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=56.29 E-value=41 Score=20.90 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
-.-+.+++++.|+.++..+..++.-++.+-.+|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445778899999999999999998888876665
No 151
>PRK15396 murein lipoprotein; Provisional
Probab=56.00 E-value=35 Score=22.08 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+||.|..++..|..++.++..+-+-+|.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988877775
No 152
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=56.00 E-value=37 Score=22.45 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIA------ELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~------eL~er~~~LE~EN~~Lk~~a 61 (75)
=+.++|++.|++||. ...-.|-+|..||.-|+++.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887664 23445667777888887765
No 153
>KOG0977|consensus
Probab=55.89 E-value=5.1 Score=33.95 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.||||..++.+|.+|-.|++.||..|+.|-..+
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I 326 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRI 326 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHH
Confidence 689999999999999999999998888875543
No 154
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.71 E-value=31 Score=25.33 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
...++++.|++++.+|.++...+..|...+|.....|
T Consensus 44 ~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 44 ELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888877777776655443
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.51 E-value=51 Score=21.87 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
..+-+.+.|+..+..|.+++..+|.|.....
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777766544
No 156
>PRK14148 heat shock protein GrpE; Provisional
Probab=55.24 E-value=22 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
-+..++++.|++++++|.++...+..|...+|...-.
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777776666666666554433
No 157
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.02 E-value=50 Score=20.64 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.+|.+.++..+-+ +.++++.|.+.|..+.+++.+++.
T Consensus 86 ~eA~~~l~~r~~~-l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 86 EEAIEFLKKRLET-LEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766654 345566666666666666665554
No 158
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=54.88 E-value=15 Score=24.51 Aligned_cols=17 Identities=53% Similarity=0.628 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELM 44 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~ 44 (75)
.+-|||+.||+.|.-|-
T Consensus 54 QideeV~~LKe~IdaLN 70 (79)
T PF10398_consen 54 QIDEEVEKLKEHIDALN 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37899999999997763
No 159
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.83 E-value=35 Score=27.07 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
+.|+..+..+++-+..+...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 84 EAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554
No 160
>KOG3759|consensus
Probab=54.36 E-value=16 Score=31.74 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~ 55 (75)
|+.||.||.+|+.=++-|+.||.
T Consensus 229 V~QLkTQItDLErFInFlQ~e~~ 251 (621)
T KOG3759|consen 229 VDQLKTQITDLERFINFLQDEVG 251 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999874
No 161
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=54.33 E-value=40 Score=26.68 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+..+|+..||++|++|+++..++|.+-.-+-...
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556777777777777777777776655443333
No 162
>KOG0982|consensus
Probab=54.16 E-value=25 Score=29.95 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCH
Q psy8521 31 EEVEVLKEKIAELM-----ERINQLEMENSILKANATQ 63 (75)
Q Consensus 31 EEVEvLKe~I~eL~-----er~~~LE~EN~~Lk~~asp 63 (75)
+|+...+++-+.|+ -|+.+|+.||+-||.+++.
T Consensus 285 rEil~k~eReasle~Enlqmr~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 285 REILIKKEREASLEKENLQMRDQQLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788777665 4678899999999998763
No 163
>PRK14162 heat shock protein GrpE; Provisional
Probab=53.94 E-value=35 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
...+++.|++++++|.++...+..|...+|.....|
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE 79 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKE 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888899999888888888877777665554
No 164
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=53.74 E-value=38 Score=22.43 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-+..+..+|+.+..++.+|..+|..|+..+
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei 80 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEI 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888777654
No 165
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.66 E-value=19 Score=31.57 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-+.++=|+-|+++|++|...+.+++.|+..|+.
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666554
No 166
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.56 E-value=48 Score=20.01 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
..+++-++...-. ...+++.|+.+++.+.+++..++...
T Consensus 61 ~~~~~~L~~~~~~-~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 61 EEAIEELEERIEK-LEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544443 35677777777777777777776654
No 167
>PLN02678 seryl-tRNA synthetase
Probab=53.52 E-value=40 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..+|+..||++|++|+.+..+++.+-.-+-...
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455777788888888888877777655444333
No 168
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.20 E-value=51 Score=20.90 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
..+.+++.|+..|..+++++..+..=..+|...+|+
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~ 120 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345556666666666666666666666666665554
No 169
>PRK14140 heat shock protein GrpE; Provisional
Probab=52.76 E-value=24 Score=25.92 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+++.|+++|++|.++...+..|...+|.
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~rk 72 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444433
No 170
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.66 E-value=31 Score=26.26 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 20 LVKSHLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 20 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
+|-.|=-=+.-+||+.||....-|+.|+.+||+.
T Consensus 168 ~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 168 AVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444566799999999999999999999975
No 171
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.63 E-value=28 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~L 50 (75)
..|++.++.+|.+|..+|.-|
T Consensus 104 e~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666544
No 172
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.07 E-value=53 Score=22.93 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
|++++.++++|.+..+++..+...+.-.+
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 173
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.98 E-value=29 Score=20.51 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=27.5
Q ss_pred chhHHHHH---HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVK---SHLMFAVREEV-----EVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVK---sHLm~AVREEV-----EvLKe~I~eL~er~~~LE~ 52 (75)
.+|.++-+ .+||-+++.|. ..++.+|.+.++|..+|..
T Consensus 23 ~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~ 68 (75)
T cd02656 23 EEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555544 47888887664 6688888999888888764
No 174
>PRK14148 heat shock protein GrpE; Provisional
Probab=51.89 E-value=39 Score=24.85 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
+..|++.|+++|.+|.+++.+| .+.+||..|.-|-
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~el--kd~~lR~~Ae~eN 72 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQF--KDEALRAKAEMEN 72 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4577888889999988888876 5777887765443
No 175
>PRK14155 heat shock protein GrpE; Provisional
Probab=51.61 E-value=36 Score=25.21 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.++++.|+++++++.++...+..|...+|...-.|
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE 53 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAERE 53 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888877777776655444
No 176
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=51.56 E-value=36 Score=27.83 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+|+..|.+++.+|++++++++.+-..|+.
T Consensus 99 ~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 99 EKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555555555554443
No 177
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=51.41 E-value=32 Score=24.32 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETL 66 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 66 (75)
-+|-|+-|+-.|..+|.+-..+|+.|++|=. .+.+||-+
T Consensus 61 ~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~---dLss~eRI 99 (120)
T COG4839 61 KAYQVQGEITDLESKISEQKTENDDLKQEVK---DLSSPERI 99 (120)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH---HhccHHHH
Confidence 4677888888888888888888888887743 34555543
No 178
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=51.30 E-value=32 Score=26.15 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..++++.||++..+|..++.+++.+++..++
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~ 67 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAADQ 67 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666554443
No 179
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.15 E-value=34 Score=23.64 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..++.+.+++.|++|.+++...|.|...||.-
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888888888754
No 180
>PRK14139 heat shock protein GrpE; Provisional
Probab=50.84 E-value=25 Score=25.63 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
|.--|++.|+++|.+|++++.+| .+.+||..|.-|
T Consensus 29 ~~~~e~~~l~~~l~~le~e~~el--kd~~lR~~Aefe 63 (185)
T PRK14139 29 AAEDAAPALEAELAEAEAKAAEL--QDSFLRAKAETE 63 (185)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34457888999999999998866 577888776544
No 181
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=50.66 E-value=13 Score=28.31 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
|.+.-|.||+.+-++|-||+.++..|.
T Consensus 266 l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 266 LNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 445567777777777777777776654
No 182
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=50.17 E-value=35 Score=22.81 Aligned_cols=45 Identities=20% Similarity=0.031 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
|||-=+.|+-++..|..|..|.+--.+|++. |++--+|++.+||+
T Consensus 5 T~LEDsLr~~~~~a~~~i~~L~aa~~rL~~a---l~~P~sp~qYqq~t 49 (80)
T PRK15366 5 TRLEDLLLHSREEAKGIILQLRAARKQLEEN---NGKLQDPQQYQQNT 49 (80)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHH
Confidence 6888889999999999999999999999875 57888999998874
No 183
>KOG2685|consensus
Probab=49.87 E-value=68 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
|.||.+---|..-.||+.|+..|.-|..++.+-|..-..|
T Consensus 338 vELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L 377 (421)
T KOG2685|consen 338 VELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLL 377 (421)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998877765555
No 184
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=49.74 E-value=67 Score=20.60 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+.+..+.|.++|++|....+.|+.-...++
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555554444333
No 185
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.57 E-value=36 Score=23.39 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
++.++.++++|+.++.++|.|-.-|
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665544
No 186
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=49.47 E-value=17 Score=29.14 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy8521 42 ELMERINQLEMENSILKANA 61 (75)
Q Consensus 42 eL~er~~~LE~EN~~Lk~~a 61 (75)
-+++|+.||+.||-+|++-.
T Consensus 218 s~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999754
No 187
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=49.34 E-value=50 Score=24.57 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
=.+++=|+.||.+|..|+.|+.+++..-..|+.....
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999998888765443
No 188
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=49.30 E-value=61 Score=24.71 Aligned_cols=38 Identities=18% Similarity=0.499 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+...+|+.+..+...+.+|.+.+..+-.|+.
T Consensus 100 nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 137 (338)
T TIGR02426 100 QDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHR 137 (338)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58888999999999999999999999999998877764
No 189
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=48.94 E-value=49 Score=24.28 Aligned_cols=27 Identities=41% Similarity=0.566 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+||+++|.+|..++..|+.||.-|+.-
T Consensus 107 ~v~~~e~~kl~~~~e~L~~e~~~L~~~ 133 (170)
T PRK13923 107 DVLSEQIGKLQEEEEKLSWENQTLKQE 133 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999988764
No 190
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.91 E-value=61 Score=23.20 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|.+.+|.+|.+.++.+..|+.....-|.-
T Consensus 32 l~~EL~evk~~v~~~I~evD~Le~~er~aR~r 63 (159)
T PF05384_consen 32 LRKELEEVKEEVSEVIEEVDKLEKRERQARQR 63 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888877666543
No 191
>PRK06390 adenylosuccinate lyase; Provisional
Probab=48.68 E-value=60 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+-|-+.+++|+.+..|..++..|.+.+..+-.|+.
T Consensus 103 nDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~ 140 (451)
T PRK06390 103 NDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYK 140 (451)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58899999999999999999999999999999887764
No 192
>PRK14158 heat shock protein GrpE; Provisional
Probab=48.13 E-value=32 Score=25.25 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
++++.|+++|.+|++++..| .+.+||..|.-|
T Consensus 40 ~~~~~le~~l~~le~e~~el--~d~~lR~~Aefe 71 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAAN--WDKYLRERADLE 71 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 46778888888888887766 577777766544
No 193
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.12 E-value=41 Score=24.00 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.+++.|++++++|.++...+..|...+|.....|
T Consensus 25 ~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 25 AEVESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888877777766666544433
No 194
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.11 E-value=23 Score=21.16 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHhh
Q psy8521 30 REEVEVLKEKIAELMERINQLE--MENSILKANATQETLG 67 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE--~EN~~Lk~~aspE~l~ 67 (75)
-.|++-|..+|..++..+..++ .-|.-.-..||++.++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve 42 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVE 42 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHH
Confidence 3567777777777777777666 3444555666666554
No 195
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=48.09 E-value=25 Score=24.59 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE 51 (75)
-|+..||+++.++...|..||
T Consensus 108 sei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 108 SEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777777777765
No 196
>PLN02320 seryl-tRNA synthetase
Probab=48.02 E-value=53 Score=27.45 Aligned_cols=32 Identities=31% Similarity=0.274 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+..+|+..||++|++|+++..+++.+-.-+=.
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888887776554433
No 197
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.75 E-value=53 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
.|-|.|..-++..+++.++.+|+.+|
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~ 30 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQEN 30 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 198
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=47.64 E-value=57 Score=26.54 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=31.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 12 LADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 12 i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
++..||--++.--|---.++|++.|++++++|.+++..|+.
T Consensus 386 ~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~ 426 (445)
T cd00187 386 FSEIQADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEK 426 (445)
T ss_pred CCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34446655666666667789999999999999999888763
No 199
>PRK14154 heat shock protein GrpE; Provisional
Probab=47.19 E-value=50 Score=24.68 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
..+++.|++++++|.++...+..|...+|...-.
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777666666654433
No 200
>PF14282 FlxA: FlxA-like protein
Probab=47.13 E-value=34 Score=22.35 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~ 52 (75)
.++-|+++|+.|.+++..|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455566666666666655544
No 201
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=46.98 E-value=74 Score=22.99 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..++++.++|.+++.+|+.++.-+
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544
No 202
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=46.53 E-value=67 Score=21.96 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..|+++++.-+..+..+++||..|
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 203
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=46.23 E-value=51 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+..+.++++.|..++.++..|...|
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 89 LQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444343333
No 204
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=46.19 E-value=73 Score=24.61 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+-|-++.++|+.+.++...+..|.+....+-.|+.
T Consensus 109 nDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~ 146 (351)
T PRK05975 109 QDVIDTSLMLRLKAASEILAARLGALIARLDALEATFG 146 (351)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58888999999999999999999999999998887763
No 205
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.83 E-value=1.1e+02 Score=23.23 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 22 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+-||=-|-.-+...-..|..|.+-|..|..||.=||.++
T Consensus 39 ~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 39 HGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777889999999999999999999876
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.82 E-value=57 Score=28.71 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..+..+.|+.+.+++..|+.||+.|+..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~ 444 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRE 444 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777653
No 207
>KOG4005|consensus
Probab=45.70 E-value=98 Score=24.88 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.|---.=|--|++..|+++.+..|+.||.+|+.-
T Consensus 79 VAAQtaRDrKKaRm~eme~~i~dL~een~~L~~e 112 (292)
T KOG4005|consen 79 VAAQTARDRKKARMEEMEYEIKDLTEENEILQNE 112 (292)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667788888888889999999888753
No 208
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=45.50 E-value=38 Score=22.40 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
+.-++++|..|.+.|.||..|-..
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~ 48 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAV 48 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777776544
No 209
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.42 E-value=78 Score=22.13 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.+.|+..|+++|++|.+.+...+.-|..|
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444444
No 210
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=45.26 E-value=81 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.505 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|-+++.+|+.+..+..++.+|.+.+..+-.++
T Consensus 90 nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~ 126 (381)
T cd01595 90 QDINDTALALQLRDALDIILPDLDALIDALAKLALEH 126 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999999999999998887775
No 211
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=44.84 E-value=65 Score=22.73 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+++|+..+++.|+.+.+++...+..++.|...
T Consensus 10 ~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsi 42 (121)
T PF03310_consen 10 ELIQELKKIESDIKAILEKLQSTEQDQENLESI 42 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 567777777777777777777666656655543
No 212
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=44.79 E-value=78 Score=20.34 Aligned_cols=26 Identities=50% Similarity=0.553 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 35 VLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.|...|++|.++..+++.+-+-++..
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555443
No 213
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.72 E-value=80 Score=21.92 Aligned_cols=27 Identities=44% Similarity=0.604 Sum_probs=17.2
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVL-------KEKIAELMERINQLEMENS 55 (75)
Q Consensus 29 VREEVEvL-------Ke~I~eL~er~~~LE~EN~ 55 (75)
-|||.|+. +++...|+.|+..||.-.+
T Consensus 57 sREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 57 SREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47777765 4566677777777765443
No 214
>PRK14164 heat shock protein GrpE; Provisional
Probab=44.68 E-value=42 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.+++.|+++++++.++...+..|...+|...-.|
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE 110 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERE 110 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988888887765444
No 215
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=44.65 E-value=67 Score=25.93 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=30.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 13 ADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 13 ~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+..||--|+.-=|---.++|++.|++++++|.+++..|+.
T Consensus 397 ~~~q~~~IL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~ 436 (445)
T smart00434 397 SEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEK 436 (445)
T ss_pred CHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666789999999999999998888763
No 216
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.51 E-value=49 Score=20.55 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=22.7
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy8521 24 HLMFAVREEV-----EVLKEKIAELMERINQLEM 52 (75)
Q Consensus 24 HLm~AVREEV-----EvLKe~I~eL~er~~~LE~ 52 (75)
+||.++.-|. +.++.+|.+-++|..+|..
T Consensus 35 ~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~ 68 (77)
T cd02683 35 LLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKK 68 (77)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776 5688889999998888764
No 217
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.32 E-value=1.3e+02 Score=22.20 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
=|+-+-.+|--.|.+--..|++.|++|..++.+||.=-+-
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~ 145 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSK 145 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777888888888889999999999999988864333
No 218
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=44.32 E-value=60 Score=18.86 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~E 53 (75)
+|.+.+++.+.++.+.+..+-.+
T Consensus 4 ~~Ld~~~~~~~~~~~~l~~~~~~ 26 (92)
T PF05190_consen 4 EELDELREEYEEIEEELEELLEE 26 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887766544
No 219
>PRK14159 heat shock protein GrpE; Provisional
Probab=44.23 E-value=51 Score=23.86 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
-++++.|+++++++.++...+..|...+|.....|
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE 63 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKE 63 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999988888877777665544
No 220
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=44.21 E-value=67 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.||--|+.=-|.--..+|++.|++++++|..++..|+.
T Consensus 386 ~q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~ 423 (439)
T PHA02592 386 EYADKLVAMNIYSMTSDEREKLQKEAEELEKEHEYWKK 423 (439)
T ss_pred HHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34544555455555689999999999999999998876
No 221
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=44.17 E-value=59 Score=18.30 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
-.+.++++++++.+++.+|+.=-..|
T Consensus 37 ~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 37 RRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577777888887777776544333
No 222
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.05 E-value=90 Score=20.41 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..++.|+++++.+..++.+|+.++.-+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 223
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=43.79 E-value=79 Score=19.68 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
.+|.+.++..+-. +++..+.+..+|+++..++.+++..
T Consensus 76 ~eA~~~l~~r~~~-l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 76 EEAIEFLKKRIKE-LEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777666553 4466666666666666666655543
No 224
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=43.50 E-value=50 Score=22.34 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE 51 (75)
+.++.+.|.++|.+|+.++..++
T Consensus 110 ~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 110 LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666666666554
No 225
>PRK14163 heat shock protein GrpE; Provisional
Probab=43.37 E-value=62 Score=24.34 Aligned_cols=36 Identities=8% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
..++++.|++++.+|.++...+..|...+|...-.|
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999998888888877777776655444
No 226
>KOG3335|consensus
Probab=43.00 E-value=83 Score=23.67 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~L 50 (75)
.|..|+.|..+|.++..+.++|
T Consensus 111 lr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 111 LRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554
No 227
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=42.84 E-value=68 Score=23.99 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.+++.|+++++++..+...++.|-.-++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRS 34 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888877777665553
No 228
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=42.69 E-value=75 Score=27.48 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+||--++.--|.--.+.|++.|++++++|.+++.+|+.
T Consensus 411 ~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~ 448 (800)
T TIGR01063 411 IQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLED 448 (800)
T ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555556666788999999999999888888763
No 229
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.58 E-value=61 Score=21.14 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.+..+|=..||++|..|+....++..+-.+.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 46778888888888877777777666655544
No 230
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=42.51 E-value=67 Score=20.95 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
-.+.|.++++++++++.+|+.-...|+..
T Consensus 77 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 105 (124)
T TIGR02051 77 MYELASRKLKSVQAKMADLLRIERLLEEL 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888877766666543
No 231
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=42.46 E-value=74 Score=25.19 Aligned_cols=38 Identities=16% Similarity=0.482 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+=|-+++++|+.++.|..++..|.+....+-.|+.
T Consensus 109 nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 146 (452)
T PRK09053 109 QDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHR 146 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 58889999999999999999999999999998877763
No 232
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.39 E-value=80 Score=24.44 Aligned_cols=34 Identities=38% Similarity=0.498 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
....|.+.-|+-|.+|++.+.+|+.|..-|+.-+
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777777777777777777777777776543
No 233
>PRK07492 adenylosuccinate lyase; Provisional
Probab=42.26 E-value=79 Score=25.21 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|-+++.+|+.++.+..++..|.+.+..+-.++
T Consensus 98 ~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~ 134 (435)
T PRK07492 98 SDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEH 134 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999998887665
No 234
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=42.26 E-value=23 Score=21.99 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMER 46 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er 46 (75)
++-+++.||-.|+.|+.|
T Consensus 36 i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 36 IAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 677888888888888753
No 235
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.21 E-value=83 Score=19.47 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.|-..+...|. .|+..--.+..++.+-+.||..|+.|-.-|+.
T Consensus 10 irakQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 10 IRAKQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777786 68888888899999999999999998888764
No 236
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=42.13 E-value=79 Score=27.25 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=34.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 12 LADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 12 i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+...||--++.--|.--.+.|++.|++.+++|.+++.+|+.
T Consensus 418 ~~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~ 458 (742)
T PRK05561 418 LSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEA 458 (742)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777778888899999999999999999988874
No 237
>PRK14154 heat shock protein GrpE; Provisional
Probab=41.91 E-value=36 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
+++.|+++|.+|++++.+| .+.+||..|.-|
T Consensus 53 ~~~~l~~el~~le~e~~el--kd~~lRl~ADfe 83 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEY--KTQYLRAQAEMD 83 (208)
T ss_pred chhhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 5667778888888888765 466777665444
No 238
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.63 E-value=69 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
+..++++.|+++++++.++...+..|...+|...-.|
T Consensus 65 ~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE 101 (211)
T PRK14160 65 KLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKE 101 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777766666666554444
No 239
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=41.47 E-value=42 Score=20.59 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy8521 43 LMERINQLEMENSILKAN 60 (75)
Q Consensus 43 L~er~~~LE~EN~~Lk~~ 60 (75)
|.+++..|+.|+.-|+..
T Consensus 70 l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 70 LEEELAELRAELDELRAR 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555543
No 240
>PRK14144 heat shock protein GrpE; Provisional
Probab=41.42 E-value=71 Score=23.73 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
...++++.|+++++++.++...+..|-..+|.....|
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE 85 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMERE 85 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888777776666655444
No 241
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=41.35 E-value=59 Score=25.85 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.--.|||.-|-.+|.+|..|..++=.||.-|.++.
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34578999999999999999999999998887764
No 242
>PRK14145 heat shock protein GrpE; Provisional
Probab=41.25 E-value=72 Score=23.57 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
...++++.|++++++|.++...+..|...+|.....|
T Consensus 49 ~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE 85 (196)
T PRK14145 49 ELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKE 85 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888877777666655443
No 243
>KOG2077|consensus
Probab=41.16 E-value=88 Score=28.17 Aligned_cols=43 Identities=35% Similarity=0.444 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy8521 14 DLGLSDLVKSHLMFAV----------REEVEV-------LKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 14 ~~~AMDLVKsHLm~AV----------REEVEv-------LKe~I~eL~er~~~LE~EN~~ 56 (75)
--+|...||.-|.--| |.|.+- |.++|++|++.+..+.+|--.
T Consensus 316 tKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 316 TKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred hhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999887544 444443 344555555555554444433
No 244
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.10 E-value=87 Score=27.61 Aligned_cols=40 Identities=35% Similarity=0.410 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 20 LVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 20 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.-|+++.-.++++--.....|..|+.|+.-.|.||+.||-
T Consensus 116 ~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 116 QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788888888888889999999999999999884
No 245
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.09 E-value=82 Score=22.42 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..+.|...|..+|..|++.|.+|+.-..-+...
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 567888899999999999999999555444443
No 246
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=41.06 E-value=46 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 39 KIAELMERINQLEMENSILK 58 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN~~Lk 58 (75)
|++.+..+|..|..||.-|+
T Consensus 24 k~~ka~~~~~kL~~en~qlk 43 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLK 43 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 247
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.92 E-value=97 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE 51 (75)
.++.|.+++..|..++..++
T Consensus 82 ~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 248
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=40.88 E-value=1e+02 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.532 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|=|-+..++|+.+..+..++.+|.+.+..+-.|+.
T Consensus 100 nD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 137 (437)
T cd01597 100 QDIIDTALVLQLRDALDLLERDLDALLDALARLAATHR 137 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 48888889999999999999999999999988877763
No 249
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.59 E-value=31 Score=26.91 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~E 53 (75)
..++-++.+|+||+.|+..|+.+
T Consensus 55 ~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 55 QALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999997
No 250
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=40.50 E-value=26 Score=21.54 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.|.||-+++||++.++-|..=|.=|=
T Consensus 13 ~e~l~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred cchheeeHHHHHHHHHHHHHHhHHHH
Confidence 46678888888888888887776553
No 251
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.30 E-value=45 Score=26.69 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN 54 (75)
|++.++++|+.|+..+++||.+-
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666655543
No 252
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=40.12 E-value=98 Score=24.14 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+=|-+..++|+.+..|..++.+|.+.+..+-.|+.
T Consensus 88 nDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 125 (435)
T cd01359 88 NDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHA 125 (435)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58888999999999999999999999999998877763
No 253
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.04 E-value=76 Score=26.00 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+.-++.+.+.++|.+|.++.++|+.|.+-|+...
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999999999999999988887543
No 254
>KOG4593|consensus
Probab=39.85 E-value=48 Score=29.45 Aligned_cols=37 Identities=43% Similarity=0.694 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 22 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.|+-|+ |+|-+-|.+.|.....++..||.||.-||.
T Consensus 488 ~q~l~~q-r~e~~~~~e~i~~~~ke~~~Le~En~rLr~ 524 (716)
T KOG4593|consen 488 EQSLLFQ-REESELLREKIEQYLKELELLEEENDRLRA 524 (716)
T ss_pred HHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 788999999999999999999999998883
No 255
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=39.83 E-value=51 Score=22.33 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMER 46 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er 46 (75)
..++|++-|++|++.++.+
T Consensus 6 ~I~~eIekLqe~lk~~e~k 24 (92)
T PF07820_consen 6 KIREEIEKLQEQLKQAETK 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887654
No 256
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=39.44 E-value=1.1e+02 Score=21.55 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
-..+|+|-++ |--|+++||.+|+.|.+=-..|.
T Consensus 101 ~~aWk~hr~~-ID~eIe~Lq~Ki~~LKeiR~hLk 133 (145)
T PF12548_consen 101 PKAWKDHRLH-IDHEIETLQDKIKNLKEIRGHLK 133 (145)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999987 46788999999998887555553
No 257
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.23 E-value=77 Score=20.04 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|++++.+|++++.+|+.--+.|...
T Consensus 73 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04789 73 RSLLLERLSSLAEQIARKQQARDLLAAL 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888776666553
No 258
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=39.08 E-value=1e+02 Score=22.88 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+-|-+...+|+.+..+..++.+|.+....+-.++
T Consensus 81 nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~ 117 (325)
T cd01334 81 NDIVDTALRLALRDALDILLPALKALIDALAAKAEEH 117 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788899999999999999999999999988887665
No 259
>PRK14140 heat shock protein GrpE; Provisional
Probab=39.06 E-value=82 Score=23.11 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
|-.++.+.|+.+|.+|.+++..| ++.+||..|.-+
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~el--kd~~lR~~Ae~e 68 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDEL--EERYLRLQADFE 68 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34567888999999999988876 578888777544
No 260
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=39.03 E-value=1.1e+02 Score=24.21 Aligned_cols=38 Identities=18% Similarity=0.401 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+=|-++.++|+.+..|..++..|.+.+..+-.|+.
T Consensus 104 nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~ 141 (449)
T PRK08540 104 NDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHK 141 (449)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58888999999999999999999999999999887763
No 261
>PRK11239 hypothetical protein; Provisional
Probab=38.82 E-value=64 Score=24.70 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 36 LKEKIAELMERINQL 50 (75)
Q Consensus 36 LKe~I~eL~er~~~L 50 (75)
|.++|..|+.++.+|
T Consensus 188 Le~rv~~Le~eva~L 202 (215)
T PRK11239 188 LQARVEALEIEVAEL 202 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 262
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.80 E-value=91 Score=20.70 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+|+.|..++..|..++.|++.+-+-+|.-+
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa 54 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQI 54 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999998888777643
No 263
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=38.79 E-value=1.1e+02 Score=23.73 Aligned_cols=38 Identities=26% Similarity=0.559 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+++.+|+.+..+..++.+|.+.+..+-.++.
T Consensus 92 nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 129 (387)
T cd01360 92 SDVVDTALALQLREALDIILKDLKELLEVLKKKALEHK 129 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47888889999999999999999999999988877763
No 264
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=38.74 E-value=90 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..++|+..|+.++.+|...+.-|..-..+.+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 46788899999999999998888887777654
No 265
>KOG2391|consensus
Probab=38.70 E-value=1.3e+02 Score=24.91 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 18 SDLVKSHLMFAVREEVEV--------------LKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEv--------------LKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
|.+|..-++++++||++. |++-+++|..-...||++-.-|+.++
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 677888889999999864 45556667777777777776666554
No 266
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=38.69 E-value=57 Score=24.52 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 20 LVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 20 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+|-.|+.=+=|+|||-|..==+.+...+.+||.
T Consensus 134 lvy~hMSeeER~EaeQLQsLR~avRqElqELE~ 166 (179)
T PF14723_consen 134 LVYRHMSEEEREEAEQLQSLRSAVRQELQELEF 166 (179)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888889998876655555555555554
No 267
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.65 E-value=51 Score=26.20 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.||+.--|++.|.+|..++..++-+|.+||....+-
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 478888899999999999999999999999855443
No 268
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=38.61 E-value=1.1e+02 Score=20.00 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.|++++.++..++.+|+.--+.|..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 81 NALLDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777776666555554
No 269
>PRK14156 heat shock protein GrpE; Provisional
Probab=38.53 E-value=65 Score=23.36 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
|...+++.|++++.+|.++...+..|-..+|....
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 65 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRAN 65 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777666555554433
No 270
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.49 E-value=92 Score=18.88 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+.++|.- +-||.|-+.+.+...++..|+.+...|+.-
T Consensus 11 ~~la~qe-~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 11 IKLAFQE-DTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444442 346777777777777777777777776654
No 271
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=38.43 E-value=93 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|-+.+.+|+.+ +.+.+++.+|.+....+-.|.
T Consensus 137 nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~ 174 (455)
T cd01362 137 NDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEF 174 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999999 679999999999988887665
No 272
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=38.36 E-value=1.1e+02 Score=19.95 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-.+..+.++|++|..+++-+|.|+.
T Consensus 86 ~~is~le~~i~~L~qeiAl~e~~~~ 110 (115)
T PF10066_consen 86 VRISRLEEKIKRLAQEIALLEAEEK 110 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455666677777666666665543
No 273
>PRK07380 adenylosuccinate lyase; Provisional
Probab=38.32 E-value=99 Score=24.63 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+-|-+++.+|+....+..++.+|.+....+-.|+.
T Consensus 95 ~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~ 132 (431)
T PRK07380 95 SDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHR 132 (431)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 48888999999999999999999999999998877763
No 274
>KOG4603|consensus
Probab=38.21 E-value=75 Score=24.33 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
||.-+|+..|..|.+++..|.++++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~ 104 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSY 104 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888777664
No 275
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.18 E-value=1.1e+02 Score=19.64 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
+|.+.++..+-. +.+.++.|.+.|..+.+++.+++
T Consensus 87 eA~~~l~~r~~~-l~~~~~~l~~~l~~l~~~~~~~~ 121 (129)
T cd00584 87 EAIEFLDKKIEE-LTKQIEKLQKELAKLKDQINTLE 121 (129)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566555554432 23344444444444444444433
No 276
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=38.14 E-value=82 Score=21.20 Aligned_cols=26 Identities=31% Similarity=0.320 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.|.+++.++.+++.+|+..-..|..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T PRK10227 82 RRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766665553
No 277
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=37.87 E-value=71 Score=21.04 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~ 52 (75)
++|.+..+++|...+.++.+|+.
T Consensus 7 ~~e~e~~~~kl~q~e~~~k~L~n 29 (86)
T PF12958_consen 7 QAEIEKAEKKLEQAEHKIKQLEN 29 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 278
>PRK09039 hypothetical protein; Validated
Probab=37.78 E-value=96 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
+.|++-||.||+.|+..+...|
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333
No 279
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=37.74 E-value=1e+02 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+.+++|+.+..|...+.+|.+....+-.++.
T Consensus 142 nD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~ 179 (473)
T PRK13353 142 NDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFD 179 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999998887763
No 280
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.46 E-value=1e+02 Score=20.29 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..+++.+|.+|.++......|+.+..-+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666554433
No 281
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.40 E-value=93 Score=21.82 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=27.8
Q ss_pred hhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHL-----MFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 16 ~AMDLVKsHL-----m~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
.+.+.+..|- ....|.|++.|.++|+++..++...+.+=
T Consensus 16 ~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 16 SALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666664 45677888888888888888877776654
No 282
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.35 E-value=98 Score=19.62 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~ 52 (75)
|+-+..|.+++.+|+..|+-|..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777776654
No 283
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.14 E-value=75 Score=19.63 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERI 47 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~ 47 (75)
||.|-+.+++.|.++.+.+
T Consensus 19 vk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 284
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=37.02 E-value=88 Score=18.28 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=27.3
Q ss_pred hhHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVK---SHLMFAVREE-----VEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 16 ~AMDLVK---sHLm~AVREE-----VEvLKe~I~eL~er~~~LE~E 53 (75)
+|.++-+ .|||-|+..| .+.++.++++..+|..+|...
T Consensus 26 eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~ 71 (77)
T smart00745 26 EALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKS 71 (77)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 4677777655 567899999999999888754
No 285
>PHA01750 hypothetical protein
Probab=36.85 E-value=1.3e+02 Score=19.99 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.|..|.+-|+.+|.++.-|...|++.-.-+|
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556777777777777766666665443333
No 286
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=36.79 E-value=60 Score=20.28 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~ 52 (75)
.+.|++++.+|++++.+|..
T Consensus 75 ~~~l~~~~~~l~~~i~~l~~ 94 (96)
T cd04788 75 LELLRRQLARLEEQLELATR 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888887753
No 287
>PRK14161 heat shock protein GrpE; Provisional
Probab=36.71 E-value=65 Score=23.23 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.-+-|+++.++|.+|++++.++ .+.+||..|.-|
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~el--kd~~lR~~Aefe 50 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEEL--KDKLIRTTAEID 50 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3566899999999999999976 577888776544
No 288
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=36.52 E-value=57 Score=21.62 Aligned_cols=30 Identities=37% Similarity=0.485 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
++++.|+++|++|.++...+..|..-++..
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r 47 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKR 47 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666665555443
No 289
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.42 E-value=1.2e+02 Score=23.19 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMF-AVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 15 ~~AMDLVKsHLm~-AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+.+|+-||+--+| |.--|++++|+++..|++.+..|..+-.-|
T Consensus 79 e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 79 EEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777666 455677777777766666666655444333
No 290
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=36.33 E-value=1.1e+02 Score=19.07 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLG 67 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 67 (75)
+-.|.+-.-..|.+|..+..+++.+=..|-..++.+.+.
T Consensus 28 ~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~ 66 (80)
T PF11488_consen 28 RFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELN 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHh
Confidence 457888888999999999999999999999988888764
No 291
>PRK03918 chromosome segregation protein; Provisional
Probab=36.19 E-value=1.1e+02 Score=25.28 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhc
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQ 68 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 68 (75)
++.+++.++++|.++..++.+|+.+=.-|+...+++.+.+
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 663 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 3455555556666666666666555555544455544443
No 292
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.13 E-value=74 Score=24.65 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANATQETL 66 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 66 (75)
---|++++.|++.|..|...+.+|..+-.-.|..+=|+.+
T Consensus 196 ~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvl 235 (258)
T PF15397_consen 196 VQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVL 235 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHh
Confidence 3458999999999999999999998876655555444443
No 293
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.05 E-value=62 Score=24.01 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
+.-=|+||..|.+.++++.+.++--..||.++.
T Consensus 110 k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 110 KKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478899999999999999999999999875
No 294
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.96 E-value=76 Score=23.71 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
..++++.|+++|.+|.+++..| .+.+||..|.-+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~el--kd~~lR~~Aefe 92 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEAL--KDRLLRTVAEYD 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3456777777777777777755 466777665433
No 295
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=35.79 E-value=86 Score=21.07 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAE----LMERINQLEM 52 (75)
Q Consensus 31 EEVEvLKe~I~e----L~er~~~LE~ 52 (75)
|-++-||+++++ -.+.+.+||.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666665 5555555554
No 296
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.47 E-value=1e+02 Score=22.32 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 24 HLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 24 HLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
-++-...+||.+||+++....+++..++..
T Consensus 61 qll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 61 QLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999988888777766654
No 297
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=35.33 E-value=1.3e+02 Score=23.61 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+-|-+..++|+....+...+..|.+.+..+-.++.
T Consensus 98 nD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 135 (435)
T TIGR00928 98 NDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYK 135 (435)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58888999999999999999999999999998887763
No 298
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=35.31 E-value=1.2e+02 Score=24.17 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|-+++.+|+.+..+...+.+|.+....+-.++
T Consensus 137 nD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~ 173 (450)
T cd01357 137 NDVYPTALRLALILLLRKLLDALAALQEAFQAKAREF 173 (450)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999998887765
No 299
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.30 E-value=75 Score=23.02 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
-..+.+.|++|+.++.+|+.+...++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888766655
No 300
>KOG3335|consensus
Probab=35.24 E-value=50 Score=24.82 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSIL-KANATQE 64 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~L-k~~aspE 64 (75)
+.|.+.|+.++.+|+..+.+++.+.+-| +.+..|+
T Consensus 105 ~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~ 140 (181)
T KOG3335|consen 105 KQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPE 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3467888888888888888888888888 5555554
No 301
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=35.15 E-value=1.1e+02 Score=19.60 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.|+++++++.+++.+|+.--+.|..
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 83 LAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888776655543
No 302
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.80 E-value=79 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
...++|++.|.++|.+|++++.+||.+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~ 585 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEK 585 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777765
No 303
>PRK14149 heat shock protein GrpE; Provisional
Probab=34.78 E-value=85 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
+.++.|+.+|++|.++...+..|...+|.....|
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE 76 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERD 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888877777666655443
No 304
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.72 E-value=1.2e+02 Score=18.92 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.-||..|+++..-+..+++..+.+|..|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777776654
No 305
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=34.70 E-value=1.3e+02 Score=21.59 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcC
Q psy8521 25 LMFAVREEVEVLKEK--------IAELMERINQLEMENSILKANA 61 (75)
Q Consensus 25 Lm~AVREEVEvLKe~--------I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-|.-.++||..|++= |..=..++.+|..||.=|+...
T Consensus 42 sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~l 86 (181)
T PF05769_consen 42 SMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSL 86 (181)
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 355667888877652 2223456789999999888653
No 306
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=34.38 E-value=63 Score=20.19 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~ 52 (75)
+=.+.|.+++.++.+++.+|+.
T Consensus 73 ~~~~~l~~~~~~l~~~i~~l~~ 94 (96)
T cd04768 73 ELTAMLLEKKQAIQQKIDRLQQ 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888764
No 307
>PRK14145 heat shock protein GrpE; Provisional
Probab=34.33 E-value=72 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.+++.|++++.+|++++..| .+.+||..|.-|
T Consensus 45 ~e~~~l~~~l~~le~e~~el--~d~~lR~~AEfe 76 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEY--LDIAQRLKAEFE 76 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 45777888888888877754 477777766443
No 308
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.88 E-value=49 Score=22.94 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=26.6
Q ss_pred chhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSH-------LMFAVREEVEVLKEKIAELMERIN 48 (75)
Q Consensus 15 ~~AMDLVKsH-------Lm~AVREEVEvLKe~I~eL~er~~ 48 (75)
.+-||||.-. ...=-|++.+.|..+|.+|+.|.+
T Consensus 50 lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 50 LNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888643 344468999999999999999975
No 309
>PRK12425 fumarate hydratase; Provisional
Probab=33.87 E-value=1.3e+02 Score=24.31 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|=+.+++|+.+ +.|...+..|.+....+-.|+.
T Consensus 139 ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~ 177 (464)
T PRK12425 139 NDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHA 177 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5888899999999999 6999999999999998887764
No 310
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.55 E-value=78 Score=23.74 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
|+-.||.++++|+++++..|.+..-
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556999999999999999887664
No 311
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.54 E-value=76 Score=24.40 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=29.9
Q ss_pred ccccchhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 11 RLADLGLSDLVKSHLMFAVR----------------------EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 11 ~i~~~~AMDLVKsHLm~AVR----------------------EEVEvLKe~I~eL~er~~~LE~ 52 (75)
.+|.++.+|-..+|-.|-++ .-++.++++|.+|+++++.|..
T Consensus 3 ~lda~~VadyL~~hPeFf~~h~~Ll~~L~lph~~~~tVSLve~ql~r~R~~~~~Le~~l~~L~~ 66 (218)
T COG3159 3 ELDAEDVADYLRQHPEFFIQHAELLEELRLPHPVAGTVSLVERQLARLRNRIRELEEELAALME 66 (218)
T ss_pred cCCHHHHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666776666443 3467899999999999988863
No 312
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=33.54 E-value=59 Score=27.77 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..|.+||.++.+.+..|+.+|..+
T Consensus 366 kcLe~qIn~qf~tIe~Lk~~n~~~ 389 (557)
T PF01763_consen 366 KCLEGQINNQFDTIEDLKEENQDL 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777654
No 313
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=33.51 E-value=35 Score=24.12 Aligned_cols=16 Identities=31% Similarity=0.408 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEVEVL 36 (75)
Q Consensus 21 VKsHLm~AVREEVEvL 36 (75)
=||||+-|+-.++-..
T Consensus 46 GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 46 GKTHLLQAIANEAQKQ 61 (219)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3999999999887543
No 314
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=33.47 E-value=92 Score=27.86 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+..+..|+.+|++|++++..-++|.++|-.-.
T Consensus 329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SL 361 (739)
T PF07111_consen 329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSL 361 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999986543
No 315
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=33.46 E-value=1.1e+02 Score=19.24 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..+.|.+++.+|++++..|+.--+.|..
T Consensus 72 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04775 72 VQAILEERLQSLNREIQRLRQQQQVLAA 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888776666654
No 316
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=33.36 E-value=1.4e+02 Score=19.58 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERIN 48 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~ 48 (75)
..+++.+...+.+|.++|-
T Consensus 33 ~~~~~~l~~~n~~lAe~nL 51 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNL 51 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444443
No 317
>PRK14141 heat shock protein GrpE; Provisional
Probab=33.10 E-value=1e+02 Score=22.93 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
..++++.|++++.+|.++...+..|-..+|...-.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888887777776666654433
No 318
>PRK04833 argininosuccinate lyase; Provisional
Probab=33.02 E-value=1.4e+02 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|=|-+.+.+|+.+..+..++..|.+....+-.|+.
T Consensus 110 nD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~ 147 (455)
T PRK04833 110 NDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQ 147 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58888999999999999999999999999988877763
No 319
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=33.01 E-value=1e+02 Score=21.05 Aligned_cols=28 Identities=14% Similarity=0.308 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|+++++++++++.+|+.--+.|+..
T Consensus 86 ~~ll~~k~~~l~~~i~~L~~~~~~L~~~ 113 (144)
T PRK13752 86 SSLAEHKLKDVREKMADLARMEAVLSEL 113 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888887777766666543
No 320
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=33.00 E-value=1.3e+02 Score=26.05 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=32.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 12 LADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 12 i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+..+||--++.--|.--.+.|++.|++++++|.+++..|+.
T Consensus 408 ~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~ 448 (738)
T TIGR01061 408 FTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQ 448 (738)
T ss_pred CCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457766776667777889999999999999999988875
No 321
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.78 E-value=76 Score=23.98 Aligned_cols=31 Identities=13% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
++++.|+++|.+|..++..| .+.+||..|.-
T Consensus 67 ~~~~~l~~el~~l~~e~~el--kd~~lR~~Adf 97 (238)
T PRK14143 67 ARLAQLEQELESLKQELEEL--NSQYMRIAADF 97 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45666777777777776654 46666655543
No 322
>PLN02646 argininosuccinate lyase
Probab=32.60 E-value=1.4e+02 Score=24.13 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+.+.+|+....+...+.+|.+.+..+-.|+.
T Consensus 124 ND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~ 161 (474)
T PLN02646 124 NDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNV 161 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999999999999988877763
No 323
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.55 E-value=1.2e+02 Score=26.04 Aligned_cols=34 Identities=38% Similarity=0.517 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
++.+|.+.|+.+.+++..|+.+||.+..-|++..
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777766555443
No 324
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=32.40 E-value=1.1e+02 Score=19.51 Aligned_cols=27 Identities=26% Similarity=0.403 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
++++.||.+|+.|..+-.+...+-.=|
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDL 28 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDL 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888877664433
No 325
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.39 E-value=1.3e+02 Score=18.76 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+-++.|+++|.++.+.+..++.+-+-++.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 326
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=32.34 E-value=1.1e+02 Score=18.05 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAEL 43 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL 43 (75)
-||-+|..+.=-||.|+...|+.|-+-
T Consensus 4 dle~~KqEIL~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999988664
No 327
>PRK14162 heat shock protein GrpE; Provisional
Probab=32.30 E-value=77 Score=23.30 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
|++.|+++|.+|.+++..| .+.+||..|.
T Consensus 40 e~~~l~~~l~~l~~e~~el--kd~~lR~~AE 68 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDL--EDKYLRSQAE 68 (194)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 5566677777777766655 3556665543
No 328
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.23 E-value=1.2e+02 Score=18.36 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-|.||.--..|-+.|.+|+.|-.-||.+-.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999988643
No 329
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=32.15 E-value=85 Score=21.16 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhc
Q psy8521 22 KSHLMFAVREEVE----VLKEKIAELMERINQLEMENSILKANATQETLGQ 68 (75)
Q Consensus 22 KsHLm~AVREEVE----vLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 68 (75)
++-++.+-.+++| .|+++|..|..+...+=.+.+-||..+|......
T Consensus 20 ~~~~~~~~~~~~EPfD~~L~~rv~~l~~~~e~~~v~va~lRr~~P~~i~~~ 70 (139)
T PF08641_consen 20 VSLLGQSEAEEYEPFDLELNERVRSLYDQLEDLTVEVAQLRRDYPRKIAEA 70 (139)
T ss_pred HHHcCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445444444443 5788888888888888888888888888765543
No 330
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=31.89 E-value=1.5e+02 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+.+++|+.+ ..+..++.+|.+.+..+-.++.
T Consensus 141 nD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~ 179 (464)
T PRK00485 141 NDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFA 179 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5889999999999999 8999999999999988877763
No 331
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=31.77 E-value=1.2e+02 Score=19.84 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+.|+++++++.+++.+|+.--..|...
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~l~~~ 108 (127)
T cd01108 82 ALALEHIAELERKIAELQAMRRTLQQL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777666655543
No 332
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.65 E-value=58 Score=20.51 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 40 IAELMERINQLEMENSILK 58 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk 58 (75)
++|.++.++.|..||=-||
T Consensus 2 lrEqe~~i~~L~KENF~LK 20 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLK 20 (75)
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 5677788888888886655
No 333
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=31.52 E-value=68 Score=24.11 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
|-=|||+||+.|.-|. ++|..+|+
T Consensus 153 LR~avRqElqELE~QL---~DRl~~l~ 176 (179)
T PF14723_consen 153 LRSAVRQELQELEFQL---EDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5569999999998774 45555554
No 334
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=31.51 E-value=1.8e+02 Score=22.90 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+|.+.+..+..+.++.++..|+.++..|+.++.-++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLK 49 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554444
No 335
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.48 E-value=1.1e+02 Score=17.69 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=27.0
Q ss_pred chhHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVK---SHLMFAVREE-----VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVK---sHLm~AVREE-----VEvLKe~I~eL~er~~~LE~ 52 (75)
..|.++-+ .+|+-|++-| -+.|++++.+-++|..+|..
T Consensus 22 ~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~ 67 (69)
T PF04212_consen 22 EEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKE 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555554 4778888755 45688899998888887753
No 336
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.37 E-value=87 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
++..++.+++++.+|++-+..-|.-+
T Consensus 44 L~~~l~~ie~~L~DL~~aV~ive~np 69 (97)
T PF09177_consen 44 LRNALQSIEWDLEDLEEAVRIVEKNP 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44555666666666666666655443
No 337
>PRK09039 hypothetical protein; Validated
Probab=31.31 E-value=1.2e+02 Score=23.50 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+-+|.-|+.+|..|..++..||.+=...+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655554443
No 338
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.27 E-value=1.7e+02 Score=21.13 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 40 IAELMERINQLEMENS 55 (75)
Q Consensus 40 I~eL~er~~~LE~EN~ 55 (75)
|..|..++..|+..|.
T Consensus 58 ~~~l~~e~e~L~~~~~ 73 (251)
T PF11932_consen 58 YRQLEREIENLEVYNE 73 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 339
>KOG4360|consensus
Probab=31.25 E-value=53 Score=28.63 Aligned_cols=31 Identities=39% Similarity=0.466 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.|+=.|-|.++.+.++++|-+|..|..+||+
T Consensus 157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk~ 187 (596)
T KOG4360|consen 157 QRELLEALQEKLKPLEEENTQLRSKAMLLKT 187 (596)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999985
No 340
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=31.23 E-value=1.6e+02 Score=21.86 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|...++++|+......+.+|-.+...+..+|.=+
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m 42 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEM 42 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Confidence 46677888885555555555555555555554433
No 341
>PRK00855 argininosuccinate lyase; Provisional
Probab=31.23 E-value=1.6e+02 Score=23.35 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|-+..++|+.+..|..++.+|.+.+..+-.|+
T Consensus 112 nD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~ 148 (459)
T PRK00855 112 NDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEH 148 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5888899999999999999999999999998887765
No 342
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.13 E-value=1.1e+02 Score=22.09 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
..+-..+++.|+++++++.++..++..|=..+|...-.|
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re 76 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERE 76 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447899999999999888888777766666554433
No 343
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=30.85 E-value=1.2e+02 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|.+++.++.+++.+|+.-.+.|...
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (140)
T PRK09514 83 KGIVDEKLAEVEAKIAELQHMRRSLQRL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776655555443
No 344
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.84 E-value=74 Score=19.39 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.3
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSH-LMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 17 AMDLVKsH-Lm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
.+|+++.+ ..-.+|.+|..+.++...+.+|...|+
T Consensus 56 ~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 56 PFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566522 344678899999999999988888775
No 345
>PTZ00464 SNF-7-like protein; Provisional
Probab=30.69 E-value=1.2e+02 Score=22.30 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-...|++++..|..|+.+|+.|-...|..+
T Consensus 19 ~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 19 ASKRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888877776443
No 346
>PRK14146 heat shock protein GrpE; Provisional
Probab=30.65 E-value=1.3e+02 Score=22.35 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
..+++.|++++.+|.++...+..|-..+|.....|
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE 94 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQE 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877777666666544433
No 347
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=30.63 E-value=68 Score=24.17 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+++|+.+.+.|+.|.+.|..|..-..-++.+|
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la 162 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKELAEHVQYLA 162 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777666666555443
No 348
>PLN00134 fumarate hydratase; Provisional
Probab=30.61 E-value=1.6e+02 Score=23.66 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREE-VEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREE-VEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|=|-+.+++|++ ...|..++.+|.+....+-.|+.
T Consensus 133 nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~ 171 (458)
T PLN00134 133 NDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFK 171 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 588999999999977 77899999999999988877763
No 349
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.54 E-value=1.2e+02 Score=19.84 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN 54 (75)
|+.|+++|.+++.....++.+-
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 147 VEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444444433
No 350
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=30.54 E-value=66 Score=24.19 Aligned_cols=32 Identities=25% Similarity=0.026 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERIN 48 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~ 48 (75)
++|..|+.+.+|.++|++.-+++..+-.+...
T Consensus 143 d~D~~K~r~~k~~eeElr~A~~kFees~E~a~ 174 (223)
T cd07613 143 DFDYKKKRQGKIPDEELRQALEKFDESKEIAE 174 (223)
T ss_pred hHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999888776655443
No 351
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=30.30 E-value=1.2e+02 Score=23.71 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=32.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 8 RSDRLADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 8 rS~~i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
|.+|.+. |||.++-.-....|++++++--.-|...+.+.+..-..|+.
T Consensus 104 R~~R~~~----dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ 151 (384)
T PF03148_consen 104 REKRPGI----DLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRA 151 (384)
T ss_pred HhCCCCc----ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 66777777777899998887666666666666655555543
No 352
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=30.27 E-value=97 Score=21.78 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANATQETL 66 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 66 (75)
-++..++.+++...++.+|+.|-..++..-|-|+|
T Consensus 97 ~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e~m 131 (161)
T PF05873_consen 97 AIKEAKEFEAESKKRIAELEKELANIESARPFEQM 131 (161)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhC
Confidence 34455677777788888888888888887765554
No 353
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.14 E-value=1.6e+02 Score=19.17 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
++-++.|.++|.+|..++.+|+.--..|
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~l~~~~~~L 106 (118)
T cd04776 79 EKMLEKIEKRRAELEQQRRDIDAALAEL 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666665443333
No 354
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=30.13 E-value=1.6e+02 Score=23.68 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+-|-+++.+|+.+ ++|..++..|.+....+-.|+
T Consensus 102 nDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~ 139 (425)
T cd01598 102 EDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEY 139 (425)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5888899999999998 889999999999998887765
No 355
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.00 E-value=1.3e+02 Score=19.87 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+.|++++.++.+++.+|+.=-..|....
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 83 KAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777666665443
No 356
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.90 E-value=1.3e+02 Score=19.38 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.|++++.++.+++.+|+.-...|..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T cd04784 82 ALIDEHLAHVRARIAELQALEKQLQA 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777776666655555543
No 357
>PRK10455 periplasmic protein; Reviewed
Probab=29.84 E-value=1.7e+02 Score=20.57 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 47 INQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 47 ~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
+..++..|.++. ..+|||-.+|.
T Consensus 117 ~~~~~~~~qiy~-vLTPEQr~q~~ 139 (161)
T PRK10455 117 LAHMETQNKIYN-VLTPEQKKQFN 139 (161)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHH
Confidence 456777777775 88999988773
No 358
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=29.84 E-value=1.7e+02 Score=24.08 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+...+|+....+..++.+|.+.+..+-.++.
T Consensus 110 nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~ 147 (614)
T PRK12308 110 NDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQ 147 (614)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999999999999988877663
No 359
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.69 E-value=1.3e+02 Score=21.03 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERIN 48 (75)
Q Consensus 34 EvLKe~I~eL~er~~ 48 (75)
|.|+.+|.+|..++.
T Consensus 54 eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 54 EELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 360
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.54 E-value=1.2e+02 Score=26.65 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+.+++-+.+| |+|+..+|.+=.-|....+.||.||--|.-.
T Consensus 72 ~~~e~~~~~l----r~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 72 EDLELERKRL----REEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4456666666 8999999999888888888999998666443
No 361
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=29.43 E-value=63 Score=23.10 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERI 47 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~ 47 (75)
-.++++|.+||.+|+.++
T Consensus 4 ~~~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 4 MSALDILEKRIEELERRV 21 (174)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 357899999999999988
No 362
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=29.35 E-value=67 Score=24.35 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.++|.||..|.+++.++.....+-.-.|
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK 59 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAK 59 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888887776655544433
No 363
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=29.30 E-value=1.1e+02 Score=18.95 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE 51 (75)
+...+..|..+++.|.++..+++
T Consensus 3 ~g~~l~~l~~~l~~l~~~~~~~~ 25 (70)
T PF10975_consen 3 MGQRLAELEQQLKQLEDQQEELE 25 (70)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888877775
No 364
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=29.19 E-value=75 Score=21.95 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMER 46 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er 46 (75)
.+|+|++-|++++++++.|
T Consensus 7 ~I~~eI~kLqe~lk~~e~k 25 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETR 25 (98)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877654
No 365
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=29.17 E-value=1.9e+02 Score=20.61 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
.+.-|+.|+.+|.+|+.++...+.--+
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444
No 366
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.79 E-value=1.4e+02 Score=20.50 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
.+|++.||++|++.+..+..|.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444443
No 367
>PRK05560 DNA gyrase subunit A; Validated
Probab=28.72 E-value=1.7e+02 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.||--++.--|.---+.|++.|++++++|.+++.+|+.
T Consensus 414 ~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~ 451 (805)
T PRK05560 414 IQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKD 451 (805)
T ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46655555555556678888888888888888877764
No 368
>KOG2397|consensus
Probab=28.70 E-value=1.1e+02 Score=26.05 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
++|.|.|.--...++|.++++.|+.|++
T Consensus 341 ~ar~~~de~~~~~k~l~~~i~~l~~~~~ 368 (480)
T KOG2397|consen 341 EARNELDEAERKLKDLDEEIRELEDELN 368 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888888999999999999998875
No 369
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.68 E-value=73 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
++|.+..++.+++-.+++.+++.-+.-.+...
T Consensus 67 ~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~ 98 (199)
T PF10112_consen 67 DREYEYIREILEEAKEKIRRIEKAIKRIRDLE 98 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 45666677777777777777776666554433
No 370
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.66 E-value=1.6e+02 Score=18.70 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.|++++.++.+++.+|+.--..|..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (123)
T cd04770 81 RALLEEKLAEVEAKIAELQALRAELAG 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666665555543
No 371
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=28.63 E-value=1.6e+02 Score=25.51 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 12 LADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 12 i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
+..+||--++.=-|-=-.+-|.+.+++.+++|++++..++.-
T Consensus 385 ~t~~qa~ail~mrl~rlt~~e~~k~~~e~~~l~~~i~~~~~~ 426 (635)
T PRK09631 385 VTEEDIENLLKIPIRRISLFDIDKNQKEIRILNKELKSVEKN 426 (635)
T ss_pred CCHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556788777777777777889999999999999998888754
No 372
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.58 E-value=89 Score=19.51 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~ 52 (75)
.+.|++++.++.+++.+|+.
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~ 95 (97)
T cd04782 76 IELLKKQEKEIKEEIEELQK 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677888888887777753
No 373
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=28.26 E-value=1.1e+02 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
..|+|.+.|++++.++..+++. .+.+....++
T Consensus 43 ~lr~e~~~l~~~~~~~~~~~~~---~d~f~~~~~~ 74 (308)
T PF11382_consen 43 SLREENDELRAELDALQAQLNA---ADQFIAAVAP 74 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5788888888888888766554 3444444443
No 374
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.23 E-value=1.2e+02 Score=22.96 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN 54 (75)
+.|+..|.+.++++..+++.|...|
T Consensus 13 ~~Ep~~L~~~~~~l~~ql~~La~~~ 37 (338)
T PF04124_consen 13 FSEPQSLSEEIASLDAQLQSLAFRN 37 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588888888888888888887766
No 375
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=28.22 E-value=1.9e+02 Score=23.21 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-+-++...|+.+..+..++.+|.+....+-.|+.
T Consensus 137 nD~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~ 174 (450)
T cd01596 137 DDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFA 174 (450)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888899999999999999999999999988877763
No 376
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.09 E-value=1.3e+02 Score=21.62 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.++.+.++-.+|..++.+|+.|..-|
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 377
>KOG4643|consensus
Probab=27.98 E-value=1.1e+02 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.+.|-++.+.|+++|++.|++|+.++.-|-...+-+
T Consensus 313 m~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ell 348 (1195)
T KOG4643|consen 313 MRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELL 348 (1195)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 478888999999999999999998886665544433
No 378
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=27.82 E-value=1.3e+02 Score=18.66 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERIN 48 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~ 48 (75)
|-+++...+..+|.+|+++++
T Consensus 50 aAke~q~~le~rI~~Le~~l~ 70 (74)
T PF03449_consen 50 AAKERQAFLEARIRELEERLA 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666666655544
No 379
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=27.77 E-value=2e+02 Score=23.22 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|-+.+.+|+++..+..++.+|.+....+-.++
T Consensus 144 nD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~ 180 (472)
T PRK12273 144 NDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEF 180 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999988887765
No 380
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=1.6e+02 Score=20.91 Aligned_cols=23 Identities=48% Similarity=0.629 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 35 VLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|.+.|.+|..+..++++++.-+
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 381
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.43 E-value=1.5e+02 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
.+..-|+.+.++|.++++++..+++....
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 35566777778888887777776665443
No 382
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.25 E-value=1.5e+02 Score=25.29 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 21 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
.-.|.....-|--|.|..|+....+|+.+||+|..=
T Consensus 292 ~n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 292 ANRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred hhhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667778899999999999999999998764
No 383
>PRK02186 argininosuccinate lyase; Provisional
Probab=26.97 E-value=1.9e+02 Score=24.81 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+.+.+|+.+..+...+.+|.+.+..+-.++.
T Consensus 517 nD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~ 554 (887)
T PRK02186 517 NDINATTTKLHLREATSRAFDALWRLRRALVFKASANV 554 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999999999999998877763
No 384
>PLN02848 adenylosuccinate lyase
Probab=26.88 E-value=2e+02 Score=23.29 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEV-LKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEv-LKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+-|-+++.+|+.++. |...+..|.+....+..++.
T Consensus 127 qDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~ 165 (458)
T PLN02848 127 EDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFA 165 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999998 99999999999999887763
No 385
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.86 E-value=1.8e+02 Score=20.42 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.++|.|=+-|-....+..+|++.||.=|.=++.+
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3566666666666666666666666655544443
No 386
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.84 E-value=1.8e+02 Score=26.26 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 22 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
|.--|-+....+..||.+|..-...+..|++||..||--.+.|
T Consensus 585 k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE 627 (786)
T PF05483_consen 585 KEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAE 627 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344567778888899999988888999999999998765544
No 387
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=26.79 E-value=1.9e+02 Score=23.52 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+.++.|+....+..++..|.+.+..+-.|+.
T Consensus 140 nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 177 (468)
T TIGR00839 140 NDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFA 177 (468)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 58999999999999999999999999999988877653
No 388
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.76 E-value=43 Score=28.15 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
-+=+.-.|++.||+|..+|.+|++..|.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 3445556666666666666666766665
No 389
>PF13879 KIAA1430: KIAA1430 homologue
Probab=26.63 E-value=70 Score=19.30 Aligned_cols=14 Identities=50% Similarity=0.634 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q psy8521 45 ERINQLEMENSILK 58 (75)
Q Consensus 45 er~~~LE~EN~~Lk 58 (75)
++..+++.||.+|=
T Consensus 36 er~~~I~reN~~LL 49 (98)
T PF13879_consen 36 ERQREIERENQILL 49 (98)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888888763
No 390
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=26.54 E-value=88 Score=23.48 Aligned_cols=30 Identities=27% Similarity=0.051 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAELMER 46 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL~er 46 (75)
++|.+|+.+.++.++|++.-+++..+-.+.
T Consensus 143 d~D~~K~r~~k~~~eE~~~A~~kfees~E~ 172 (223)
T cd07615 143 DFDYKKKRQGKIPDEEIRQAVEKFEESKEL 172 (223)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 578899999999999999988887665443
No 391
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=26.50 E-value=2.2e+02 Score=22.59 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|-|-+..++|+.+..|..++.+|.+.+..+-.++.
T Consensus 108 nD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~ 145 (455)
T TIGR00838 108 NDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHV 145 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 58888999999999999999999999999988877763
No 392
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=26.49 E-value=1.1e+02 Score=23.56 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
.+|.|.+++||++|.++..+.+
T Consensus 210 ~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 210 EKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888876654
No 393
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=26.48 E-value=91 Score=23.64 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 35 VLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..++.|++|++++.+|+.|-.-..+..
T Consensus 161 ~N~~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 161 ENEENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356789999999999988877666555
No 394
>PRK10698 phage shock protein PspA; Provisional
Probab=26.44 E-value=2.2e+02 Score=20.74 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+...-++.|+.+|..|..++.+.+..-..|..
T Consensus 110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 110 LVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777776666643
No 395
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=26.35 E-value=78 Score=24.33 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCH
Q psy8521 31 EEVEVLKEKIAELMERINQ-------LEMENSILKANATQ 63 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~-------LE~EN~~Lk~~asp 63 (75)
+++..|+.+|.+|.++++. +=.|+++....++|
T Consensus 2 ~~l~~l~~~i~~L~~k~~~~f~~lk~fi~e~~f~~~i~~~ 41 (345)
T PF05075_consen 2 EKLKELEKKIKELSEKMSAHFDDLKAFITENNFYMEIISP 41 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHH
Confidence 5778899999999988865 33455555444433
No 396
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=26.34 E-value=1.2e+02 Score=19.77 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE 51 (75)
+..+.++++|.+++.++..|+
T Consensus 8 ~~~~~~~~ki~~ve~~V~~l~ 28 (116)
T PF10552_consen 8 QATEEHNEKIEEVENRVDDLE 28 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777776
No 397
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.07 E-value=93 Score=24.76 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
||.|=...+=|.+|+.+++.|.+++|+.++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666677777777777766543
No 398
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.07 E-value=2.4e+02 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN 54 (75)
+..++.+++|+++..+++.+.
T Consensus 30 ~~~~~~~~~l~~~~~~~~~~~ 50 (378)
T TIGR01554 30 TAAALEKEELETDVEKLKEEI 50 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444333333333
No 399
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.07 E-value=1.8e+02 Score=18.41 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+=.+.|++++.+|++++..|+.--..|+.
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (108)
T cd01107 75 ELRKLLREKLAELEAEIEELQRILRLLED 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566788888888888888766555553
No 400
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=26.04 E-value=1.2e+02 Score=21.50 Aligned_cols=38 Identities=26% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
....-..|++|..+..+-|.|..--...+.+|.|--.+
T Consensus 80 ~~~v~~~Ikel~k~~~~re~E~~e~~~~v~QekL~~~~ 117 (152)
T PF08644_consen 80 LQEVFRQIKELQKRVKQREQERREKADLVEQEKLILSK 117 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEcc
Confidence 44556789999999999999999888888888876554
No 401
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=25.96 E-value=1.8e+02 Score=18.83 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+.|.+++.++.+++.+|+.--+.|...
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (127)
T TIGR02044 82 ARTLEKVAEIERKISELQSMRDQLEAL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655555433
No 402
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.92 E-value=1.9e+02 Score=18.75 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
...|++++.++++++.+|+.--..|+...
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 81 DAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888877776666543
No 403
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.81 E-value=1.9e+02 Score=21.25 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLE 51 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE 51 (75)
+.++++|++|++++...+
T Consensus 156 ~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 156 EELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444333
No 404
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.72 E-value=2.3e+02 Score=21.78 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+++.+.|++++++|......++.+-.-++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENEKLERELERLK 42 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777666665555444333
No 405
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=25.71 E-value=2.1e+02 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 44 MERINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 44 ~er~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
+.++..++..|.++ ++.+|||=++|.
T Consensus 108 e~~Vem~k~~nqmy-~lLTPEQKaq~~ 133 (166)
T PRK10363 108 ARQVEMAKVRNQMY-RLLTPEQQAVLN 133 (166)
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 45667778888877 578999988774
No 406
>PRK08084 DNA replication initiation factor; Provisional
Probab=25.68 E-value=56 Score=23.12 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q psy8521 22 KSHLMFAVREEVE 34 (75)
Q Consensus 22 KsHLm~AVREEVE 34 (75)
||||+.|+..++.
T Consensus 58 KThLl~a~~~~~~ 70 (235)
T PRK08084 58 RSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 407
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.45 E-value=2e+02 Score=22.15 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+..+.|..++..+...+.+++.++..|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 21 ELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555555556666666666666655554
No 408
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=25.30 E-value=1.6e+02 Score=18.81 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE 51 (75)
+||.+|...|..|+.++..|.
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665554
No 409
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.23 E-value=1e+02 Score=21.99 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8521 40 IAELMERINQLEMENSILKA 59 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~ 59 (75)
|.+|+...+.|+.||.-|+.
T Consensus 98 i~~L~nE~n~L~eEN~~L~e 117 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKE 117 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 55566666666666666653
No 410
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=25.18 E-value=2.7e+02 Score=20.08 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..---.+..++..|..+-+++..+|-++|.+|.-|+.
T Consensus 167 K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 203 (221)
T PF05700_consen 167 KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQ 203 (221)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888889999999988888887774
No 411
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.01 E-value=1.7e+02 Score=17.72 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
.+-.+.+.+++.+|+.+...|.
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~l~ 97 (100)
T cd00592 76 AALLALLDEKLAELEEKIARLE 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888877765
No 412
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=25.00 E-value=89 Score=23.78 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy8521 43 LMERINQLEMENSILKANA 61 (75)
Q Consensus 43 L~er~~~LE~EN~~Lk~~a 61 (75)
-..|++.||.|-+.||+-+
T Consensus 120 AlqKIsALEdELs~LRaQI 138 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQI 138 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888643
No 413
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.00 E-value=1.1e+02 Score=22.96 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.+.|+++|.+|.+++..| .+.+||..|-
T Consensus 42 ~~~l~~~l~~l~~e~~el--~d~~lR~~AE 69 (214)
T PRK14163 42 TAGLTAQLDQVRTALGER--TADLQRLQAE 69 (214)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 455666666666666644 3555555443
No 414
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.97 E-value=1.9e+02 Score=18.28 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+-.+.|.+++.+|.+++.+|+.--+.|.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777766555544
No 415
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.96 E-value=1.6e+02 Score=18.75 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~ 52 (75)
.+.|-++...|++|+..||.
T Consensus 44 L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 44 LQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777764
No 416
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=24.94 E-value=1.7e+02 Score=17.90 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+|.+++.+-.+|-+|..+--++=.+-.-+|.
T Consensus 3 ~lR~~ID~ID~~lv~Ll~~R~~~~~~i~~~K~ 34 (83)
T TIGR01797 3 ALREKISAIDEKLLKLLAERRELAFEVGKSKL 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998877777666666664
No 417
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=24.92 E-value=1.1e+02 Score=22.33 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~L 50 (75)
+|++.+++|+++..+|.+.+..+
T Consensus 240 iv~~A~~~l~~k~~~~~~~~~~~ 262 (263)
T PRK00783 240 ILLEALKILKRKADELIEALEEL 262 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 67888899999999888877643
No 418
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.90 E-value=1.5e+02 Score=25.45 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.-.|.+.||+++..++++...-++++.+|+.-
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888877754
No 419
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.86 E-value=1e+02 Score=26.48 Aligned_cols=23 Identities=17% Similarity=0.567 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~E 53 (75)
.+++.|+.|+..|.+++.+||.+
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888876
No 420
>KOG2010|consensus
Probab=24.85 E-value=65 Score=26.88 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 19 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 19 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
|==|+.||| +||.||.-+.|++++.+.=-.|
T Consensus 139 DNEKsnl~Y----qVDtLKD~LeE~eeqLaeS~Re 169 (405)
T KOG2010|consen 139 DNEKNNLIY----QVDTLKDVLEEQEEQLAESYRE 169 (405)
T ss_pred cccccceee----eHHHHHHHHHHHHHHHHHHHHH
Confidence 334777888 5666666666666555443333
No 421
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.85 E-value=1.8e+02 Score=21.78 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
.||+.++.+++|+.-|+.-...=+.|=
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL 190 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQEL 190 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777766555444443
No 422
>PF10271 Tmp39: Putative transmembrane protein; InterPro: IPR019397 This is a family of putative, eukaryote, transmembrane proteins but the function is unknown.
Probab=24.85 E-value=48 Score=27.27 Aligned_cols=13 Identities=62% Similarity=0.677 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEK 39 (75)
Q Consensus 27 ~AVREEVEvLKe~ 39 (75)
-.+|+|||+||.-
T Consensus 213 ~~IR~EV~~Lk~D 225 (423)
T PF10271_consen 213 DQIREEVEVLKMD 225 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3689999999963
No 423
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.84 E-value=1.3e+02 Score=26.47 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
|+-..|=-|=..|+..||.||.-||.++
T Consensus 179 e~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 179 EAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566789999999999999875
No 424
>PRK14150 heat shock protein GrpE; Provisional
Probab=24.81 E-value=1.2e+02 Score=21.92 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAEL 43 (75)
Q Consensus 31 EEVEvLKe~I~eL 43 (75)
++++.|++++.++
T Consensus 41 ~~i~~l~~~l~~~ 53 (193)
T PRK14150 41 ARIAELEAQLAEA 53 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 425
>PRK14144 heat shock protein GrpE; Provisional
Probab=24.54 E-value=1.2e+02 Score=22.51 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
+.+.|+++|.+|+.++..+ .+.+||..|.-
T Consensus 46 ~~~~l~~~i~~le~e~~el--kdk~lR~~Aef 75 (199)
T PRK14144 46 SYTALEEQLTLAEQKAHEN--WEKSVRALAEL 75 (199)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4555666666666666644 45566655443
No 426
>PRK06705 argininosuccinate lyase; Provisional
Probab=24.39 E-value=2.5e+02 Score=22.97 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|-+.+.+|+.+..+.+++.+|.+.+..+-.++
T Consensus 117 nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~ 153 (502)
T PRK06705 117 NDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADH 153 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999988887665
No 427
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=24.38 E-value=1e+02 Score=22.05 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 9 SDRLADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 9 S~~i~~~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
||-|+.+.|.++++.=-.|| +.|++....+.+....||.+|.-+
T Consensus 55 ~Gdi~eEEA~~ll~eL~~~a-----sqL~~~~~~~~e~l~~le~k~~k~ 98 (127)
T PF14591_consen 55 SGDIDEEEALQLLDELKSYA-----SQLQEHYFRVRELLEDLERKIQKA 98 (127)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-----HTHHHHHHHHHHHHHCTT------
T ss_pred cCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888988888888887 567777777777777777776543
No 428
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=24.30 E-value=2e+02 Score=18.24 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
||.||+.|++-.++...-..++.+-
T Consensus 2 leelk~~i~~~l~~~~~~~~~~~~~ 26 (162)
T PF05698_consen 2 LEELKEKIREELEKQKKQQIEQQKR 26 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888887777666655555443
No 429
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.29 E-value=1.7e+02 Score=20.60 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
.-.+++.+++.++++.+++..|+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 51 LFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666543
No 430
>KOG0483|consensus
Probab=24.21 E-value=1.3e+02 Score=22.35 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.+-+.||.++..|-..+..|+.|+.-|+....
T Consensus 112 ~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 112 KDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 35678999999999999999999999887765
No 431
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=24.17 E-value=1.3e+02 Score=23.66 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~ 52 (75)
.+|++.|++++++++.++..|+.
T Consensus 390 ~~e~~kL~~e~~~l~~ei~~l~~ 412 (426)
T PF00521_consen 390 KEEIEKLQKEIKELEKEIEELEK 412 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777777653
No 432
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.07 E-value=1.9e+02 Score=18.62 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.|++++.++.+++.+|+.--..|..
T Consensus 79 ~~~l~~~~~~l~~~i~~L~~~~~~l~~ 105 (126)
T cd04783 79 RELAEQKLAEVDEKIADLQRMRASLQE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766655555543
No 433
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.01 E-value=98 Score=23.14 Aligned_cols=28 Identities=11% Similarity=0.334 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.++++.++.+..+.+.++.....+|.++
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr~~~~~~ 203 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQIKNKVF 203 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444444555555555555555555443
No 434
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.99 E-value=1.4e+02 Score=22.72 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+|+++.+|++.+|+.++..+...+|+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56666677777766666666555543
No 435
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.99 E-value=1.3e+02 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~E 53 (75)
..|.--|+++..+|.+++.+...+
T Consensus 51 e~~~qkL~eqteeLK~kvqe~sk~ 74 (106)
T PF12443_consen 51 EQMIQKLGEQTEELKDKVQEFSKR 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667888888888888877655
No 436
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=23.96 E-value=61 Score=26.38 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 20 LVKSHLMFAVREEVEVL 36 (75)
Q Consensus 20 LVKsHLm~AVREEVEvL 36 (75)
+=|||||-|++-+....
T Consensus 124 lGKTHLl~Aign~~~~~ 140 (408)
T COG0593 124 LGKTHLLQAIGNEALAN 140 (408)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 44999999999886543
No 437
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=23.95 E-value=2.2e+02 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|-|=+.+++|+.. +.|.+.+.+|.+.+.++-.|.
T Consensus 138 nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~ 175 (458)
T TIGR00979 138 NDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEF 175 (458)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888899999999 799999999999988887665
No 438
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=23.92 E-value=78 Score=23.22 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy8521 40 IAELMERINQLEMENSILKAN 60 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~~ 60 (75)
|..|+.++.+|+.|..-||.-
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~ 21 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQ 21 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhC
Confidence 455666666677776666654
No 439
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=23.76 E-value=2e+02 Score=19.17 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.|+++++++.+++.+|+.--..|..
T Consensus 80 ~~~l~~k~~~i~~~i~~L~~~~~~L~~ 106 (131)
T cd04786 80 LAALERKVADIEALEARLAQNKAQLLV 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666766666666665555544
No 440
>KOG2991|consensus
Probab=23.73 E-value=1.3e+02 Score=24.55 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Q psy8521 26 MFAVREEVE-------VLKEKIAELMERINQLEMENSILKANATQETL 66 (75)
Q Consensus 26 m~AVREEVE-------vLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 66 (75)
|--.-|+|| +|.+++++-.+++.+|+.+|..+++.+-++..
T Consensus 266 m~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 266 MEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444556666 57777788888899999999999988876654
No 441
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=23.73 E-value=1.6e+02 Score=21.91 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERIN 48 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~ 48 (75)
+|++-|+.+|.+|.+++.
T Consensus 44 ~e~~~l~~~i~~L~~~l~ 61 (212)
T COG3599 44 DENEDLEDEIDELKEELK 61 (212)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 442
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.72 E-value=1.3e+02 Score=18.81 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~E 53 (75)
.+.|++++.++++++.+|+.-
T Consensus 83 ~~~l~~~~~~l~~~i~~l~~~ 103 (107)
T cd04777 83 KSFLKNKKDELEKEIEDLKKA 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888888877653
No 443
>KOG3584|consensus
Probab=23.70 E-value=1.2e+02 Score=25.01 Aligned_cols=30 Identities=37% Similarity=0.334 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
|-||==-.-||=||=|+.|+.-||-.|..|
T Consensus 302 AARECRRKKKEYVKCLENRVAVLENQNKaL 331 (348)
T KOG3584|consen 302 AARECRRKKKEYVKCLENRVAVLENQNKAL 331 (348)
T ss_pred HHHHHHHhHhHHHHHHHhHHHHHhcccHHH
Confidence 455554555666777777777777766543
No 444
>KOG1333|consensus
Probab=23.52 E-value=87 Score=24.58 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
-|-||+|+|+.+|-.|...++++..|
T Consensus 187 ~~~e~n~~lr~~~~~lq~e~~~~t~~ 212 (241)
T KOG1333|consen 187 QVQEENEVLRQKLFALQAEIHRLKKE 212 (241)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhhc
Confidence 46799999999999998888777654
No 445
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.46 E-value=2.5e+02 Score=22.29 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+-+=..+..|..++.+|..||.-|+.
T Consensus 133 d~~l~~~~~l~~~~~~L~~enerL~~ 158 (342)
T PF06632_consen 133 DWCLDANSRLQAENEHLQKENERLES 158 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555543
No 446
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.38 E-value=2.7e+02 Score=19.85 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=2.9
Q ss_pred CHHHhhc
Q psy8521 62 TQETLGQ 68 (75)
Q Consensus 62 spE~l~q 68 (75)
.|+.+.+
T Consensus 133 Dp~~i~~ 139 (188)
T PF03962_consen 133 DPEKIEK 139 (188)
T ss_pred CHHHHHH
Confidence 4444433
No 447
>KOG0930|consensus
Probab=23.35 E-value=88 Score=25.96 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=25.3
Q ss_pred chhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLV--KSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLV--KsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
++-|.|- +.|..= .-+|++.||+.|+|.++.+.+++.
T Consensus 14 ~E~~eL~~ir~rk~q-L~deIq~Lk~Ei~ev~~eid~~~~ 52 (395)
T KOG0930|consen 14 EERMELENIRRRKQE-LLDEIQRLKDEIAEVMEEIDNLES 52 (395)
T ss_pred HHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4555553 333322 237899999999999999888864
No 448
>KOG0241|consensus
Probab=23.32 E-value=1.1e+02 Score=29.52 Aligned_cols=14 Identities=50% Similarity=0.840 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAE 42 (75)
Q Consensus 29 VREEVEvLKe~I~e 42 (75)
.|||||.|++++..
T Consensus 369 lReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 369 LREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHhh
Confidence 46777777776654
No 449
>PRK06835 DNA replication protein DnaC; Validated
Probab=23.29 E-value=1.4e+02 Score=23.03 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN 54 (75)
.+.++.||++|.+|.++..+|=.+|
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~~ 88 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVSN 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677888888888887776654433
No 450
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=23.23 E-value=2.2e+02 Score=19.60 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.-+++.+++.|+.|.++-...+.-..-||...-
T Consensus 53 ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 53 EADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999998888888887653
No 451
>KOG4301|consensus
Probab=23.09 E-value=1.4e+02 Score=25.13 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
|..++.-|++|+++|+.+.+|-.-|+
T Consensus 406 vkq~r~lia~lE~~n~~i~~E~~rl~ 431 (434)
T KOG4301|consen 406 VKQQRQLIAELENKNREILQEIQRLR 431 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999977665
No 452
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=1.6e+02 Score=24.40 Aligned_cols=33 Identities=36% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
=.+.+|+..|+++|++++.+..+++.|-+-+-.
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll 103 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTLLL 103 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356789999999999999999998888644433
No 453
>KOG4797|consensus
Probab=22.98 E-value=1.5e+02 Score=21.18 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 37 KEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~Lk~ 59 (75)
||.+.-|.+++..|+.-|+.|++
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665543
No 454
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=22.93 E-value=1.9e+02 Score=17.67 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+|.+++.+-.+|-+|..+--.+=.+-.-+|..
T Consensus 4 ~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 4 TLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999888777666666666653
No 455
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=22.87 E-value=72 Score=19.19 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAE 42 (75)
Q Consensus 28 AVREEVEvLKe~I~e 42 (75)
.+|+||+.||.++.-
T Consensus 3 ~~~~~ve~Lr~el~~ 17 (63)
T smart00224 3 QLRKEVEQLRKELSR 17 (63)
T ss_pred HHHHHHHHHHHHHCC
Confidence 467888888877653
No 456
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=22.85 E-value=92 Score=25.63 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
||.|.++=.||+.++.-.+.||.||-.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK 28 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDK 28 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888854
No 457
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=22.76 E-value=28 Score=27.26 Aligned_cols=17 Identities=41% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 38 EKIAELMERINQLEMEN 54 (75)
Q Consensus 38 e~I~eL~er~~~LE~EN 54 (75)
.+|++|...+.-|..||
T Consensus 129 T~I~dLrrlVe~L~aeN 145 (243)
T PF08961_consen 129 TKIADLRRLVEFLLAEN 145 (243)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444333333333333
No 458
>PRK06722 exonuclease; Provisional
Probab=22.72 E-value=1.9e+02 Score=22.11 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~L 50 (75)
+....|++.|...|||.- ..||.-|++-++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 278 (281)
T PRK06722 247 ESTIELLKKHFRTAVRKA----ERQIRYLAEMEKVV 278 (281)
T ss_pred chHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 356679999999999874 34555555555443
No 459
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.60 E-value=1.9e+02 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN 54 (75)
+|+-.++.+|..|..++..|+..|
T Consensus 100 ~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 100 EELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 460
>PRK10325 heat shock protein GrpE; Provisional
Probab=22.56 E-value=95 Score=22.56 Aligned_cols=8 Identities=38% Similarity=0.692 Sum_probs=3.5
Q ss_pred HHHHHhcC
Q psy8521 54 NSILKANA 61 (75)
Q Consensus 54 N~~Lk~~a 61 (75)
+.+||..|
T Consensus 60 d~~lR~~A 67 (197)
T PRK10325 60 DGILRVKA 67 (197)
T ss_pred HHHHHHHH
Confidence 44444443
No 461
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.44 E-value=1.9e+02 Score=17.51 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+++..+..+|.++..++..+...|..|
T Consensus 84 ~~l~~~~~~l~~~~~~~~~~n~~N~~l 110 (143)
T PF05130_consen 84 EELQALWRELRELLEELQELNERNQQL 110 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555443
No 462
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.39 E-value=1.8e+02 Score=20.64 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHhhcCC
Q psy8521 50 LEMENSILKANATQETLGQLP 70 (75)
Q Consensus 50 LE~EN~~Lk~~aspE~l~q~~ 70 (75)
++.-+.+ -+..+|||-++|.
T Consensus 127 ~~~~~~~-~~vLTpEQRak~~ 146 (170)
T PRK12750 127 LEKRHQM-LSILTPEQKAKFQ 146 (170)
T ss_pred HHHHHHH-HHhCCHHHHHHHH
Confidence 3444444 5678899888764
No 463
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.32 E-value=2e+02 Score=18.47 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~ 52 (75)
+.++.|-++-..+++|+..||.
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 42 QRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777764
No 464
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.31 E-value=62 Score=24.61 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=17.1
Q ss_pred ecccccccccchhHHHHHH
Q psy8521 5 SLSRSDRLADLGLSDLVKS 23 (75)
Q Consensus 5 sl~rS~~i~~~~AMDLVKs 23 (75)
++-|+++|.-++|+.+||.
T Consensus 296 ~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 296 IDIRSGRITREEAIELVKE 314 (343)
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 4579999999999999998
No 465
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.28 E-value=3e+02 Score=19.62 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
.....++..|++.+.+|..++..|+.....
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444333
No 466
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.24 E-value=2.4e+02 Score=18.44 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
..|.+.++..+-. +.+.++.|.+.|.++.++..++..
T Consensus 93 ~eA~~~l~~~~~~-l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 93 DEAIEILDKRKEE-LEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666554 344555555555555555555544
No 467
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=22.16 E-value=1.6e+02 Score=20.74 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~E 53 (75)
+.|++.+++++.+++.++..++..
T Consensus 2 ~~~~~~~e~~~~~l~~~i~~~~~~ 25 (154)
T PF13015_consen 2 EKEIDEAERKLSDLESKIRELEDD 25 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777766654
No 468
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=22.15 E-value=2.7e+02 Score=19.16 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHhhcCCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSI-LKANATQETLGQLPH 71 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~-Lk~~aspE~l~q~~~ 71 (75)
+.++++=.+...+...|+.+.+- +.-+-.|+.++++.+
T Consensus 65 ~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~~~ev~~~l~~ 103 (133)
T PF09440_consen 65 AELAEKREEVLAELKELEEETEPVLELLEDPEVVKNLRS 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHc
Confidence 77888888888888999888654 444557788777765
No 469
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.12 E-value=1.5e+02 Score=22.60 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
.+.+|+++..|-++++-.||.|+.-
T Consensus 58 ~~~~L~~~LrEkEErILaLEad~~k 82 (205)
T PF12240_consen 58 NASNLKELLREKEERILALEADMTK 82 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888776643
No 470
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=22.06 E-value=2e+02 Score=19.96 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|++++++|.+++.+|+.--..|...
T Consensus 76 ~~~L~~~~~~l~~ei~~L~~~~~~l~~l 103 (172)
T cd04790 76 TDVLRRRLAELNREIQRLRQQQRAIATL 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776665555544
No 471
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=22.06 E-value=1.3e+02 Score=15.53 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 41 AELMERINQLEMENSILK 58 (75)
Q Consensus 41 ~eL~er~~~LE~EN~~Lk 58 (75)
++|+.+...|+.|..+++
T Consensus 4 k~lEa~~qkLe~e~q~~e 21 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQISE 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 678888888888887764
No 472
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=22.05 E-value=1.1e+02 Score=20.32 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERIN 48 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~ 48 (75)
-|-|+-|+|+|.+|+..-.
T Consensus 56 ee~v~plreki~dle~Sft 74 (78)
T PF11803_consen 56 EEAVAPLREKIRDLEKSFT 74 (78)
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3567788888888876543
No 473
>KOG0946|consensus
Probab=21.96 E-value=1.6e+02 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+.--|-|.|++.+.++....+||+.++++||.-.
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344667788888888888889999999998754
No 474
>PRK14979 DNA-directed RNA polymerase subunit D; Provisional
Probab=21.85 E-value=1.2e+02 Score=22.33 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
|+++....|+++...+.++++++|.
T Consensus 167 al~~Aa~iL~~~l~~~~~~l~~~~~ 191 (195)
T PRK14979 167 ILRSALEILKNKAEKFLQELEGIEL 191 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6778888999999999888887763
No 475
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.84 E-value=2.4e+02 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
..+.||..|+-+|.++..++.++...
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34667777777777777777776543
No 476
>KOG1962|consensus
Probab=21.76 E-value=1.6e+02 Score=22.43 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+.|+.|+.++.....+|-.||+-|+
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 477
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=21.68 E-value=2.4e+02 Score=19.80 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.+|.+.+........=+.++..|..||.-||.-+.
T Consensus 65 ~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 65 QLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 34555666666666667788888899998887654
No 478
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.67 E-value=2.1e+02 Score=17.72 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.+-++.|++++.+|.+++.+|+.--..|.
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 100 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTID 100 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888899999998888876555543
No 479
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=21.60 E-value=2e+02 Score=17.27 Aligned_cols=33 Identities=15% Similarity=0.370 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+|.+++.+-.+|-+|..+-..+=.+-.-+|..
T Consensus 3 ~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 3 ELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999998888777777666666654
No 480
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.50 E-value=2.4e+02 Score=22.14 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-++++.+.|++++.++.+++.+|+..-..|+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566677777777777777777666544444
No 481
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=21.46 E-value=2.3e+02 Score=18.03 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+.+-.+.|.++|.++.+.+.+|..
T Consensus 83 l~~~~~~l~~~~~~~~~~~~~~~~ 106 (108)
T cd04773 83 LEQRRVALTQRGRAMLDAAAALAA 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555543
No 482
>KOG3000|consensus
Probab=21.44 E-value=1.8e+02 Score=23.04 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-.|+..|.++|.++...+..||.|-..+..-.
T Consensus 197 ~qe~~~l~~~l~~~~~~~~~le~ERdfyf~kL 228 (295)
T KOG3000|consen 197 KQELEELTQQLTELKTTIASLEKERDFYFSKL 228 (295)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 68999999999999999999999987776543
No 483
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.41 E-value=2e+02 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+.||+.++..+..|..+...+..||.
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666555555554
No 484
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=21.38 E-value=2.4e+02 Score=18.28 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHhcCC
Q psy8521 32 EVEVLKEKIAELMERI------------NQLEMENSILKANAT 62 (75)
Q Consensus 32 EVEvLKe~I~eL~er~------------~~LE~EN~~Lk~~as 62 (75)
.+++.|+|++||+... .+.|.+.++|.....
T Consensus 37 n~~iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~rrLL~d~~~ 79 (117)
T TIGR03142 37 NLAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLADIPA 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCccc
Confidence 5678889999986553 345666677766443
No 485
>KOG3119|consensus
Probab=21.35 E-value=1.7e+02 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+..+.+|.+|+..|..|.++..-|
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555444444333
No 486
>KOG3828|consensus
Probab=21.33 E-value=2.3e+02 Score=24.09 Aligned_cols=12 Identities=67% Similarity=1.021 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKI 40 (75)
Q Consensus 29 VREEVEvLKe~I 40 (75)
.|+|||+||...
T Consensus 232 IR~EVe~Lk~Df 243 (457)
T KOG3828|consen 232 IREEVEVLKDDF 243 (457)
T ss_pred HHHHHHHHHHHH
Confidence 799999999643
No 487
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.21 E-value=2.1e+02 Score=22.45 Aligned_cols=29 Identities=41% Similarity=0.660 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.||-.++++|.+.-+|..+||.|-+-|..
T Consensus 221 ke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 221 KEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888888887766654
No 488
>KOG1029|consensus
Probab=21.19 E-value=1.6e+02 Score=27.53 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+-|.+.|+.+|+|+.+++.+|-.|-.+|-
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 35788999999999999999999988774
No 489
>KOG1319|consensus
Probab=21.13 E-value=4.1e+02 Score=20.77 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHhhcCCCCC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQ-ETLGQLPHPN 73 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp-E~l~q~~~~~ 73 (75)
-+=+-.|+.+|+.-++..++|..+-..||-..+. |++.+-+..|
T Consensus 111 idyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~qdn 155 (229)
T KOG1319|consen 111 IDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAHQDN 155 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4556689999999999999999999999987653 7777665544
No 490
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=21.12 E-value=1.9e+02 Score=16.95 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
++.|.++|.++....-.|...... .++-.|
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~-~~l~n~ 38 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKAT-GQLENP 38 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence 467788888888877777776655 333333
No 491
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=21.00 E-value=2.7e+02 Score=20.14 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..|+..|-+.+.++.+++.+++++...+-.
T Consensus 205 ~~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~ 234 (435)
T PRK09467 205 ASEVRSVTRAFNQMAAGIKQLEDDRTLLMA 234 (435)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888877665433
No 492
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.88 E-value=2.6e+02 Score=18.32 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.||.---+-|..|..+++.||.|=+.=|
T Consensus 66 ~eV~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 66 GEVSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4565555668899999999999866543
No 493
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.88 E-value=2e+02 Score=19.45 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 37 KEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~L 57 (75)
+.|..-.++|+.+||.|-.-+
T Consensus 13 ~~QLrafIerIERlEeEk~~i 33 (85)
T COG3750 13 AGQLRAFIERIERLEEEKKTI 33 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666665443
No 494
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=20.70 E-value=33 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 16 GLSDLVKSH-LMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 16 ~AMDLVKsH-Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
=|.|+.--| .--.++.|.+.|++....|.+++..|+..-..++..+
T Consensus 35 IA~dI~~~~~~r~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi 81 (142)
T PF03836_consen 35 IAKDIRNKRRYREQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYI 81 (142)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455655433 3456889999999999999999998887766555443
No 495
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=20.66 E-value=2.2e+02 Score=17.39 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+|.+++.+-.+|-+|..+--.+=.+-.-+|..
T Consensus 3 ~lR~~ID~ID~~lv~Ll~~R~~~~~~ia~~K~~ 35 (82)
T TIGR01803 3 DIREAIDRIDLALVQALGRRMDYVKRASEFKRS 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478899999999999888877777777777754
No 496
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.58 E-value=2.4e+02 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+|.+..++.+++|+++..+++.+...++.
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 55 (378)
T TIGR01554 27 KELTAAALEKEELETDVEKLKEEIKLLED 55 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=20.57 E-value=2e+02 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
+.-.++++.|.++|.+|+++...||.+
T Consensus 564 ~~~~~~~~~~e~~i~~le~~~~~~~~~ 590 (635)
T PRK11147 564 YKLQRELEQLPQLLEDLEAEIEALQAQ 590 (635)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=20.52 E-value=1.7e+02 Score=16.19 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhh
Q psy8521 36 LKEKIAELMERINQLEMENSILKANATQETLG 67 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 67 (75)
|..+|..+..+..++=.+. .+.+|+++.
T Consensus 2 L~~~Ie~~R~~L~~~~~~~----~l~~~~vl~ 29 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKK----GLTDPEVLE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCCHHHHH
No 499
>PRK11020 hypothetical protein; Provisional
Probab=20.42 E-value=1.7e+02 Score=20.82 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANATQETLGQL 69 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 69 (75)
+.+|..|..|-+|...+..--.....--.++.++||
T Consensus 1 m~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf 36 (118)
T PRK11020 1 MVEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQF 36 (118)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
No 500
>PHA02698 hypothetical protein; Provisional
Probab=20.31 E-value=1.8e+02 Score=19.79 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=0.0
Q ss_pred cccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 9 SDRLAD-LGLSDLVKSHLMFAVREEVEVLKEKIAELMERIN 48 (75)
Q Consensus 9 S~~i~~-~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~ 48 (75)
|.++|+ ..-. -.|+.|.+--.||.|.|-..|.+|..-.+
T Consensus 47 s~mLD~FLedi-q~ksElqLLsqEEMdELl~EledlarLL~ 86 (89)
T PHA02698 47 SDMLDNFLEDI-QYKSELQLLSQEEMDELLVELEDLARLLS 86 (89)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Done!