Query psy8521
Match_columns 75
No_of_seqs 47 out of 49
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 21:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dip_A Delta-sleep-inducing pe 100.0 6.1E-35 2.1E-39 190.5 -0.4 58 17-74 1-58 (78)
2 2yy0_A C-MYC-binding protein; 97.4 0.00011 3.9E-09 43.4 3.3 44 16-59 2-47 (53)
3 2oqq_A Transcription factor HY 97.2 0.00072 2.5E-08 39.6 4.9 30 31-60 10-39 (42)
4 1ci6_A Transcription factor AT 96.0 0.013 4.5E-07 34.9 4.8 34 28-61 27-60 (63)
5 1yzm_A FYVE-finger-containing 93.9 0.16 5.4E-06 30.3 5.1 43 11-53 2-50 (51)
6 1dh3_A Transcription factor CR 93.3 0.11 3.8E-06 30.2 3.8 29 33-61 24-52 (55)
7 1t2k_D Cyclic-AMP-dependent tr 93.1 0.46 1.6E-05 27.4 6.3 34 27-60 25-58 (61)
8 2jee_A YIIU; FTSZ, septum, coi 93.1 0.2 6.8E-06 32.1 5.0 30 30-59 26-62 (81)
9 2oxj_A Hybrid alpha/beta pepti 92.9 0.13 4.4E-06 28.9 3.4 29 34-62 4-32 (34)
10 1gk7_A Vimentin; intermediate 92.1 0.43 1.5E-05 26.5 5.0 30 30-59 5-34 (39)
11 1go4_E MAD1 (mitotic arrest de 92.1 0.3 1E-05 32.2 5.0 31 29-59 10-40 (100)
12 2yy0_A C-MYC-binding protein; 91.9 0.3 1E-05 28.5 4.4 26 28-53 23-48 (53)
13 1jnm_A Proto-oncogene C-JUN; B 91.8 0.36 1.2E-05 28.1 4.7 31 30-60 28-58 (62)
14 2dgc_A Protein (GCN4); basic d 91.8 0.22 7.6E-06 29.6 3.8 28 33-60 32-59 (63)
15 1dh3_A Transcription factor CR 91.4 0.5 1.7E-05 27.4 5.0 24 37-60 21-44 (55)
16 1uii_A Geminin; human, DNA rep 91.3 0.4 1.4E-05 31.0 4.9 39 26-64 41-79 (83)
17 3m48_A General control protein 90.6 0.49 1.7E-05 26.3 4.2 28 35-62 4-31 (33)
18 2j5u_A MREC protein; bacterial 90.2 0.14 4.8E-06 36.6 2.2 36 27-62 22-60 (255)
19 4h22_A Leucine-rich repeat fli 89.9 0.64 2.2E-05 31.0 5.1 35 18-56 21-55 (103)
20 1jnm_A Proto-oncogene C-JUN; B 89.9 0.45 1.5E-05 27.6 3.8 27 36-62 20-46 (62)
21 3a7p_A Autophagy protein 16; c 89.1 1.1 3.9E-05 31.4 6.1 37 21-57 93-129 (152)
22 3s9g_A Protein hexim1; cyclin 89.0 1.8 6.3E-05 29.1 6.8 43 17-59 32-86 (104)
23 1avy_A Fibritin, gpwac M; bact 89.0 1.1 3.8E-05 28.7 5.4 33 20-52 9-43 (74)
24 1wlq_A Geminin; coiled-coil; 2 88.9 0.61 2.1E-05 30.2 4.2 37 27-63 34-70 (83)
25 1t2k_D Cyclic-AMP-dependent tr 88.7 0.63 2.1E-05 26.8 3.8 23 37-59 21-43 (61)
26 2dgc_A Protein (GCN4); basic d 88.6 1.1 3.9E-05 26.5 5.0 33 28-60 20-52 (63)
27 2wt7_A Proto-oncogene protein 88.5 1.1 3.6E-05 26.2 4.8 31 30-60 29-59 (63)
28 3hnw_A Uncharacterized protein 88.2 0.7 2.4E-05 31.0 4.3 23 31-53 110-132 (138)
29 2wvr_A Geminin; DNA replicatio 88.1 0.78 2.7E-05 33.9 4.9 38 26-63 110-147 (209)
30 2wt7_A Proto-oncogene protein 87.9 0.74 2.5E-05 26.9 3.8 25 37-61 22-46 (63)
31 2jee_A YIIU; FTSZ, septum, coi 87.3 1.2 4.2E-05 28.4 4.9 28 32-59 21-48 (81)
32 2w83_C C-JUN-amino-terminal ki 87.2 1 3.5E-05 28.9 4.5 38 16-53 26-73 (77)
33 1uo4_A General control protein 87.0 1.2 4.2E-05 24.9 4.2 28 35-62 5-32 (34)
34 1gd2_E Transcription factor PA 86.9 1.2 4E-05 27.4 4.4 28 33-60 31-58 (70)
35 1z0k_B FYVE-finger-containing 86.7 1.2 4.1E-05 27.8 4.5 39 15-53 26-68 (69)
36 2wq1_A General control protein 86.6 0.91 3.1E-05 25.3 3.5 28 34-61 3-30 (33)
37 1gu4_A CAAT/enhancer binding p 86.6 1.9 6.4E-05 26.9 5.4 31 31-61 43-73 (78)
38 1gu4_A CAAT/enhancer binding p 86.5 1.6 5.6E-05 27.1 5.1 35 27-61 25-59 (78)
39 1hjb_A Ccaat/enhancer binding 86.4 1.8 6.3E-05 27.4 5.4 31 30-60 42-72 (87)
40 3s4r_A Vimentin; alpha-helix, 86.1 0.61 2.1E-05 29.4 2.9 29 31-59 9-37 (93)
41 3u06_A Protein claret segregat 85.9 1.1 3.6E-05 34.3 4.7 34 28-61 7-40 (412)
42 1kd8_B GABH BLL, GCN4 acid bas 85.5 1.8 6.3E-05 24.4 4.4 29 33-61 3-31 (36)
43 4dzn_A Coiled-coil peptide CC- 85.5 2.2 7.5E-05 23.6 4.7 28 32-59 3-30 (33)
44 3he4_B Synzip5; heterodimeric 85.1 1.8 6E-05 25.5 4.4 20 33-52 5-24 (46)
45 3c3g_A Alpha/beta peptide with 85.0 1.2 4.2E-05 24.7 3.5 29 34-62 3-31 (33)
46 1ci6_A Transcription factor AT 84.5 2.6 8.8E-05 24.7 5.0 27 32-58 24-50 (63)
47 3w03_C DNA repair protein XRCC 84.3 2.1 7.2E-05 30.5 5.4 33 29-61 143-175 (184)
48 2zxx_A Geminin; coiled-coil, c 83.3 1.5 5.1E-05 27.9 3.8 35 28-62 31-65 (79)
49 3q4f_C DNA repair protein XRCC 83.2 2.4 8.3E-05 30.8 5.4 30 30-59 153-182 (186)
50 1hjb_A Ccaat/enhancer binding 83.1 2.5 8.4E-05 26.8 4.8 35 27-61 25-59 (87)
51 2jn6_A Protein CGL2762, transp 83.0 0.061 2.1E-06 31.7 -2.6 25 36-60 64-88 (97)
52 2lw1_A ABC transporter ATP-bin 82.8 1.4 4.7E-05 26.9 3.4 30 25-54 16-45 (89)
53 3c3f_A Alpha/beta peptide with 82.4 1.8 6.2E-05 24.2 3.5 29 34-62 4-32 (34)
54 3ol1_A Vimentin; structural ge 82.4 2.2 7.6E-05 27.5 4.5 43 31-74 76-118 (119)
55 1nkp_B MAX protein, MYC proto- 82.4 2.6 8.9E-05 25.1 4.5 27 33-59 49-75 (83)
56 2l5g_A GPS2 protein, G protein 81.1 3.1 0.00011 23.7 4.2 24 33-56 10-33 (38)
57 4etp_A Kinesin-like protein KA 81.1 2.9 0.0001 31.6 5.4 34 28-61 7-40 (403)
58 1a93_B MAX protein, coiled coi 81.0 1.8 6.2E-05 24.0 3.2 17 32-48 15-31 (34)
59 3nmd_A CGMP dependent protein 80.7 6.5 0.00022 24.6 6.0 44 15-59 15-61 (72)
60 1rtm_1 Mannose-binding protein 80.5 1.9 6.5E-05 26.5 3.5 23 29-51 2-24 (149)
61 2bni_A General control protein 80.1 3.3 0.00011 23.1 4.1 29 34-62 4-32 (34)
62 3vmx_A Voltage-gated hydrogen 79.8 3.4 0.00012 24.4 4.3 27 33-59 13-39 (48)
63 1z0j_B FYVE-finger-containing 79.8 5.5 0.00019 24.2 5.3 38 15-52 15-56 (59)
64 1rtm_1 Mannose-binding protein 79.6 1.7 5.8E-05 26.7 3.1 29 36-64 2-30 (149)
65 1kd8_A GABH AIV, GCN4 acid bas 79.1 2.1 7.3E-05 24.1 3.1 29 33-61 3-31 (36)
66 2hy6_A General control protein 78.8 3.6 0.00012 23.0 3.9 28 34-61 4-31 (34)
67 2oqq_A Transcription factor HY 78.3 4.8 0.00016 23.3 4.5 26 33-58 5-30 (42)
68 3tq2_A KE1; parallel three hel 78.2 5.4 0.00018 22.4 4.6 32 27-58 4-35 (36)
69 1zme_C Proline utilization tra 78.0 4 0.00014 22.5 4.1 20 33-52 46-65 (70)
70 3kin_B Kinesin heavy chain; mo 76.0 5.3 0.00018 25.7 4.8 30 29-58 87-116 (117)
71 2wuj_A Septum site-determining 75.8 2.8 9.5E-05 24.2 3.1 24 29-52 32-55 (57)
72 2er8_A Regulatory protein Leu3 75.2 2 6.9E-05 24.1 2.3 22 30-51 48-69 (72)
73 2oa5_A Hypothetical protein BQ 75.1 3 0.0001 28.1 3.5 22 40-61 10-31 (110)
74 1t6f_A Geminin; coiled-coil, c 73.3 10 0.00035 21.4 5.6 35 27-61 3-37 (37)
75 4dzo_A Mitotic spindle assembl 73.2 4.2 0.00014 26.8 3.8 22 31-52 4-25 (123)
76 1hlo_A Protein (transcription 72.9 3.4 0.00012 24.6 3.0 22 33-54 59-80 (80)
77 3coq_A Regulatory protein GAL4 72.7 1.6 5.4E-05 25.2 1.5 20 31-50 45-64 (89)
78 1gd2_E Transcription factor PA 71.7 5.5 0.00019 24.3 3.8 21 37-57 28-48 (70)
79 2l5g_B Putative uncharacterize 71.5 9.5 0.00033 22.0 4.6 25 29-53 14-38 (42)
80 4e61_A Protein BIM1; EB1-like 70.9 8 0.00027 25.6 4.7 28 29-56 16-43 (106)
81 1aa0_A Fibritin, gpwac E; bact 70.9 9.8 0.00034 25.9 5.2 36 17-52 48-85 (113)
82 3u1c_A Tropomyosin alpha-1 cha 69.1 18 0.00062 22.6 6.2 40 17-57 3-49 (101)
83 3i5c_A Fusion of general contr 69.0 8.1 0.00028 23.8 4.2 37 34-70 3-39 (206)
84 1go4_E MAD1 (mitotic arrest de 68.4 8.6 0.00029 25.1 4.4 39 25-63 13-53 (100)
85 2ve7_A Kinetochore protein HEC 68.3 2.8 9.5E-05 30.8 2.3 38 31-69 185-222 (315)
86 1hwt_C Protein (heme activator 68.1 2.1 7.1E-05 24.4 1.3 20 31-50 58-77 (81)
87 3hnw_A Uncharacterized protein 68.1 14 0.00049 24.5 5.6 15 27-41 71-85 (138)
88 1nlw_A MAD protein, MAX dimeri 67.8 11 0.00036 23.0 4.5 27 33-59 49-75 (80)
89 1zme_C Proline utilization tra 66.5 10 0.00036 20.8 4.0 23 38-60 44-66 (70)
90 3mq7_A Bone marrow stromal ant 66.3 11 0.00036 25.9 4.7 32 30-61 77-108 (121)
91 1a93_B MAX protein, coiled coi 65.7 13 0.00044 20.5 4.1 24 30-53 6-29 (34)
92 1nkp_A C-MYC, MYC proto-oncoge 65.5 12 0.00042 22.9 4.5 27 33-59 54-80 (88)
93 1am9_A Srebp-1A, protein (ster 65.4 6.9 0.00023 23.6 3.3 20 40-59 52-71 (82)
94 3oja_B Anopheles plasmodium-re 64.3 13 0.00044 27.4 5.2 32 28-59 541-572 (597)
95 3viq_B Mating-type switching p 63.7 9.6 0.00033 24.4 3.9 27 33-59 3-29 (85)
96 3err_A Fusion protein of micro 63.3 15 0.00053 28.9 5.8 35 28-62 177-211 (536)
97 3aei_A Prefoldin beta subunit 62.9 7.4 0.00025 25.8 3.3 25 27-51 71-95 (99)
98 1jcd_A Major outer membrane li 62.7 17 0.00057 21.2 4.5 28 32-59 5-32 (52)
99 2wg5_A General control protein 61.6 10 0.00035 24.0 3.8 25 35-59 11-35 (109)
100 2r2v_A GCN4 leucine zipper; co 61.5 15 0.00051 20.4 3.9 26 35-60 5-30 (34)
101 3u59_A Tropomyosin beta chain; 61.1 26 0.0009 21.6 6.2 40 17-57 3-49 (101)
102 1ses_A Seryl-tRNA synthetase; 61.0 18 0.00062 27.4 5.6 31 28-58 68-98 (421)
103 1t3j_A Mitofusin 1; coiled coi 61.0 27 0.00091 22.7 5.7 40 16-55 32-71 (96)
104 2dq0_A Seryl-tRNA synthetase; 60.7 18 0.0006 27.8 5.5 34 28-61 73-106 (455)
105 2wg5_A General control protein 60.1 11 0.00038 23.8 3.7 30 23-52 6-35 (109)
106 2eqb_B RAB guanine nucleotide 59.3 6.5 0.00022 25.7 2.5 33 30-62 4-36 (97)
107 3e98_A GAF domain of unknown f 59.2 10 0.00035 26.9 3.8 29 16-45 65-93 (252)
108 1c1g_A Tropomyosin; contractIl 59.1 29 0.00099 21.4 6.4 27 26-52 8-34 (284)
109 1nkp_B MAX protein, MYC proto- 58.9 10 0.00034 22.5 3.2 29 29-57 52-80 (83)
110 1wle_A Seryl-tRNA synthetase; 58.7 19 0.00065 28.3 5.5 30 28-57 120-149 (501)
111 3a2a_A Voltage-gated hydrogen 58.7 28 0.00097 21.2 5.4 31 30-60 17-47 (58)
112 3trt_A Vimentin; cytoskeleton, 58.5 24 0.00082 20.4 4.7 28 31-58 49-76 (77)
113 3qne_A Seryl-tRNA synthetase, 58.3 19 0.00067 28.4 5.5 30 28-57 75-104 (485)
114 3azd_A Short alpha-tropomyosin 57.8 5.7 0.00019 21.5 1.8 27 31-57 4-30 (37)
115 4dzn_A Coiled-coil peptide CC- 57.7 22 0.00074 19.5 4.3 25 28-52 6-30 (33)
116 1a92_A Delta antigen; leucine 57.4 12 0.00042 22.3 3.3 30 29-58 12-41 (50)
117 4e61_A Protein BIM1; EB1-like 57.4 32 0.0011 22.7 5.7 31 27-57 7-37 (106)
118 3i00_A HIP-I, huntingtin-inter 57.2 33 0.0011 22.5 5.7 15 31-45 40-54 (120)
119 3v1a_A Computational design, M 56.7 9.7 0.00033 22.2 2.7 35 15-49 7-45 (48)
120 2v6x_A Vacuolar protein sortin 56.6 25 0.00086 20.7 4.7 38 16-53 31-76 (85)
121 3nmd_A CGMP dependent protein 56.1 16 0.00056 22.7 3.9 36 28-63 37-72 (72)
122 2w6a_A ARF GTPase-activating p 55.3 18 0.0006 22.4 3.9 23 37-59 40-62 (63)
123 3tq7_B Microtubule-associated 55.2 8 0.00027 24.4 2.4 25 32-56 2-26 (82)
124 1zke_A Hypothetical protein HP 54.6 9.8 0.00034 24.7 2.7 16 28-43 56-71 (83)
125 1fmh_A General control protein 53.9 25 0.00085 19.3 4.0 27 32-58 2-28 (33)
126 2fel_A 3-carboxy-CIS,CIS-mucon 53.5 36 0.0012 25.1 6.0 38 18-55 109-146 (359)
127 1hlo_A Protein (transcription 52.8 12 0.00041 22.1 2.8 22 38-59 57-78 (80)
128 1flk_A TNF receptor associated 52.1 30 0.001 23.5 5.1 31 21-52 41-71 (228)
129 1wfd_A Hypothetical protein 15 52.0 20 0.00069 21.9 3.8 31 23-53 43-78 (93)
130 3viq_B Mating-type switching p 52.0 21 0.0007 22.8 3.9 25 29-53 6-30 (85)
131 3swk_A Vimentin; cytoskeleton, 52.0 21 0.00072 21.9 3.9 31 30-60 55-85 (86)
132 1buu_A Protein (mannose-bindin 51.9 22 0.00076 22.3 4.1 22 30-51 22-43 (168)
133 3he5_B Synzip2; heterodimeric 51.4 22 0.00075 21.2 3.7 19 36-54 8-26 (52)
134 1j1d_B Troponin T, TNT; THIN f 51.4 17 0.00059 23.6 3.6 21 34-54 45-65 (106)
135 2akf_A Coronin-1A; coiled coil 51.0 24 0.00083 19.3 3.6 23 30-52 5-27 (32)
136 2v66_B Nuclear distribution pr 50.4 31 0.0011 22.7 4.7 26 30-55 48-73 (111)
137 2cpt_A SKD1 protein, vacuolar 50.2 22 0.00074 22.8 3.9 30 23-52 46-81 (117)
138 2dq3_A Seryl-tRNA synthetase; 49.5 16 0.00054 27.7 3.6 34 29-62 73-106 (425)
139 1q08_A Zn(II)-responsive regul 49.3 35 0.0012 19.7 4.4 26 33-58 41-66 (99)
140 1uuj_A Platelet-activating fac 49.2 7.8 0.00027 24.8 1.6 18 36-53 63-80 (88)
141 3iyn_Q Protein IX, PIX, hexon- 49.2 20 0.00069 25.1 3.8 47 18-64 92-138 (140)
142 1oeg_A Apolipoprotein E; siali 48.8 8.1 0.00028 20.2 1.4 17 33-49 3-19 (26)
143 2v71_A Nuclear distribution pr 48.6 32 0.0011 24.4 4.9 29 29-57 100-128 (189)
144 2v6y_A AAA family ATPase, P60 48.3 28 0.00097 20.8 4.0 37 16-52 29-73 (83)
145 1use_A VAsp, vasodilator-stimu 48.2 35 0.0012 19.8 4.2 29 16-44 7-35 (45)
146 2dfs_A Myosin-5A; myosin-V, in 48.0 28 0.00096 29.6 5.2 19 42-60 1020-1038(1080)
147 3swk_A Vimentin; cytoskeleton, 47.4 14 0.00047 22.8 2.5 31 30-60 27-57 (86)
148 2wuj_A Septum site-determining 47.3 33 0.0011 19.5 4.0 23 36-58 32-54 (57)
149 3kin_B Kinesin heavy chain; mo 47.2 22 0.00076 22.7 3.6 21 29-49 94-114 (117)
150 3mtu_A Tropomyosin alpha-1 cha 46.8 45 0.0015 20.0 6.4 37 16-53 2-45 (75)
151 1lwu_B Fibrinogen beta chain; 46.7 35 0.0012 25.5 5.1 30 31-60 28-57 (323)
152 2v71_A Nuclear distribution pr 46.5 35 0.0012 24.2 4.9 29 31-59 49-77 (189)
153 1buu_A Protein (mannose-bindin 46.1 14 0.00048 23.3 2.5 30 34-63 19-48 (168)
154 2xdj_A Uncharacterized protein 45.2 47 0.0016 20.5 4.7 26 28-53 31-56 (83)
155 2zvf_A Alanyl-tRNA synthetase; 44.9 52 0.0018 20.8 5.1 25 30-54 31-55 (171)
156 1lwu_B Fibrinogen beta chain; 44.7 23 0.00077 26.5 3.8 27 26-52 30-56 (323)
157 1dof_A Adenylosuccinate lyase; 44.7 54 0.0018 24.4 5.8 37 18-54 97-133 (403)
158 1oef_A Apolipoprotein E; glyco 44.5 27 0.00092 17.1 2.9 17 33-49 7-23 (26)
159 2zxx_A Geminin; coiled-coil, c 44.0 29 0.001 21.9 3.7 29 30-58 40-68 (79)
160 2w6b_A RHO guanine nucleotide 43.9 27 0.00092 21.2 3.4 18 26-43 12-29 (56)
161 3c8t_A Fumarate lyase; structu 43.6 56 0.0019 24.6 5.8 37 18-54 105-141 (451)
162 1c3c_A Protein (adenylosuccina 43.6 57 0.0019 24.4 5.8 37 18-54 94-130 (429)
163 1pyi_A Protein (pyrimidine pat 43.5 24 0.00082 20.4 3.1 18 32-49 49-66 (96)
164 2pms_C Pneumococcal surface pr 43.5 30 0.001 23.4 3.9 26 32-57 62-87 (125)
165 1fxk_C Protein (prefoldin); ar 43.3 53 0.0018 20.3 4.9 37 15-52 87-123 (133)
166 1q5n_A 3-carboxy-CIS,CIS-mucon 43.2 57 0.002 24.5 5.8 37 18-54 111-147 (454)
167 1re5_A 3-carboxy-CIS,CIS-mucon 43.1 58 0.002 24.5 5.8 37 18-54 107-143 (450)
168 2e9f_A Argininosuccinate lyase 43.0 57 0.002 24.8 5.8 38 18-55 111-148 (462)
169 3fx0_A NF-kappa-B essential mo 42.8 48 0.0016 21.8 4.7 31 30-60 37-70 (96)
170 1k7w_A Delta 2 crystallin; eye 42.7 58 0.002 24.8 5.8 37 18-54 116-152 (468)
171 1jsw_A L-aspartase, L-aspartat 42.5 62 0.0021 24.8 6.0 38 18-55 145-182 (478)
172 2wt7_B Transcription factor MA 42.1 56 0.0019 20.8 4.9 27 31-57 48-74 (90)
173 2zvf_A Alanyl-tRNA synthetase; 42.1 36 0.0012 21.6 4.0 25 35-59 29-53 (171)
174 4eei_A Adenylosuccinate lyase; 42.1 66 0.0023 24.4 6.0 37 18-54 95-131 (438)
175 3jsv_C NF-kappa-B essential mo 41.9 70 0.0024 20.8 5.4 31 29-59 21-54 (94)
176 1zxa_A CGMP-dependent protein 41.8 48 0.0017 20.2 4.3 25 35-59 22-46 (67)
177 2pfm_A Adenylosuccinate lyase; 41.6 63 0.0021 24.4 5.8 37 18-54 106-142 (444)
178 1tj7_A Argininosuccinate lyase 41.1 56 0.0019 24.8 5.5 37 18-54 110-146 (457)
179 1ytz_T Troponin T; muscle, THI 41.1 21 0.00071 23.3 2.7 19 35-53 46-64 (107)
180 1wlq_A Geminin; coiled-coil; 2 41.1 32 0.0011 22.0 3.6 22 30-51 44-65 (83)
181 1am9_A Srebp-1A, protein (ster 41.0 56 0.0019 19.4 4.5 26 33-58 52-77 (82)
182 2v66_B Nuclear distribution pr 41.0 72 0.0025 20.9 5.4 31 28-58 39-69 (111)
183 1ic2_A Tropomyosin alpha chain 40.8 56 0.0019 19.3 5.3 9 26-34 8-16 (81)
184 3he5_A Synzip1; heterodimeric 40.5 31 0.0011 20.3 3.2 18 41-58 6-23 (49)
185 1aq5_A Matrilin-1, CMP, cartil 40.4 53 0.0018 19.0 4.4 23 29-51 21-43 (47)
186 3m9b_A Proteasome-associated A 40.0 37 0.0013 25.2 4.3 24 36-59 73-96 (251)
187 3r6q_A Aspartase; aspartate am 39.8 67 0.0023 24.8 5.8 37 18-54 142-178 (468)
188 1vdk_A Fumarase C, fumarate hy 39.5 56 0.0019 24.9 5.3 37 18-54 141-178 (466)
189 4etp_A Kinesin-like protein KA 39.3 30 0.001 26.0 3.7 26 27-52 13-38 (403)
190 2w6b_A RHO guanine nucleotide 39.1 63 0.0022 19.5 4.9 30 38-67 10-39 (56)
191 1l8d_A DNA double-strand break 38.7 63 0.0021 19.3 6.3 30 29-58 69-98 (112)
192 4ani_A Protein GRPE; chaperone 38.7 48 0.0017 23.6 4.6 36 29-64 64-99 (213)
193 3bhg_A Adenylosuccinate lyase; 38.4 60 0.0021 24.6 5.3 37 18-54 127-164 (459)
194 3i00_A HIP-I, huntingtin-inter 37.9 72 0.0024 20.9 5.0 29 30-58 21-60 (120)
195 1fur_A Fumarase C, FUMC; hydro 37.8 76 0.0026 24.2 5.8 37 18-54 141-178 (467)
196 3lss_A Seryl-tRNA synthetase; 37.7 58 0.002 25.7 5.2 28 30-57 109-137 (484)
197 2qga_B Adenylosuccinate lyase; 37.5 63 0.0022 24.5 5.3 37 18-54 123-160 (465)
198 1fzc_C Fibrin; blood coagulati 36.9 69 0.0024 24.0 5.4 24 30-53 17-40 (319)
199 3s4r_A Vimentin; alpha-helix, 36.8 74 0.0025 19.6 4.9 30 29-58 54-83 (93)
200 2ve7_A Kinetochore protein HEC 36.6 53 0.0018 23.9 4.6 22 29-50 190-211 (315)
201 2pnv_A Small conductance calci 36.6 43 0.0015 18.8 3.3 19 34-52 19-37 (43)
202 3rrk_A V-type ATPase 116 kDa s 36.5 70 0.0024 22.5 5.1 26 28-53 103-128 (357)
203 2p0s_A ABC transporter, permea 36.0 41 0.0014 20.8 3.4 33 41-73 84-118 (143)
204 3u1c_A Tropomyosin alpha-1 cha 35.9 78 0.0027 19.6 4.7 22 32-53 38-59 (101)
205 1x79_B RAB GTPase binding effe 35.7 20 0.00067 23.8 2.0 36 24-59 70-105 (112)
206 2ptr_A Adenylosuccinate lyase; 35.7 70 0.0024 24.2 5.3 37 18-54 124-161 (462)
207 1d66_A Protein (GAL4); protein 35.4 12 0.00041 20.1 0.8 14 38-51 52-65 (66)
208 1fxk_C Protein (prefoldin); ar 35.4 79 0.0027 19.5 6.0 33 29-61 86-118 (133)
209 3pbf_A Pulmonary surfactant-as 35.3 44 0.0015 19.9 3.4 21 34-54 5-25 (148)
210 3bas_A Myosin heavy chain, str 35.1 76 0.0026 19.2 5.4 30 29-58 19-55 (89)
211 1uii_A Geminin; human, DNA rep 35.1 87 0.003 19.9 5.0 21 39-59 47-67 (83)
212 1lwu_C Fibrinogen gamma chain; 34.6 1.1E+02 0.0036 23.0 6.1 32 28-59 23-54 (323)
213 3ocf_A Fumarate lyase:delta cr 34.4 73 0.0025 24.8 5.3 37 18-54 162-198 (478)
214 1q06_A Transcriptional regulat 34.0 73 0.0025 20.0 4.4 25 34-58 82-106 (135)
215 3rrk_A V-type ATPase 116 kDa s 33.8 86 0.0029 22.0 5.2 31 30-60 98-128 (357)
216 3zwh_Q Myosin-9; Ca-binding pr 33.8 24 0.00083 20.1 1.9 23 39-61 7-29 (45)
217 3eff_K Voltage-gated potassium 33.8 64 0.0022 19.9 4.1 20 34-53 114-133 (139)
218 2xdj_A Uncharacterized protein 33.3 83 0.0028 19.4 4.5 34 26-59 22-55 (83)
219 1yfm_A Fumarase, YFUM; lyase, 33.1 79 0.0027 24.5 5.3 37 18-54 166-203 (488)
220 2xzr_A Immunoglobulin-binding 33.0 90 0.0031 21.1 4.9 31 30-60 75-105 (114)
221 2zqm_A Prefoldin beta subunit 32.9 79 0.0027 18.8 5.4 37 15-52 69-105 (117)
222 1gmj_A ATPase inhibitor; coile 32.8 96 0.0033 19.7 6.5 31 18-52 42-72 (84)
223 1bb1_B Designed, thermostable 32.6 54 0.0018 18.2 3.2 23 27-49 12-34 (36)
224 2ic6_A Nucleocapsid protein; h 32.4 70 0.0024 20.1 4.1 25 28-52 49-73 (78)
225 2nr5_A Hypothetical protein SO 32.4 32 0.0011 21.3 2.4 16 31-46 44-59 (67)
226 1fxk_A Prefoldin; archaeal pro 32.3 78 0.0027 18.5 5.4 25 31-55 72-96 (107)
227 2k48_A Nucleoprotein; viral pr 32.0 66 0.0022 21.5 4.1 25 28-52 79-103 (107)
228 3na7_A HP0958; flagellar bioge 31.8 1.1E+02 0.0037 21.1 5.4 23 28-50 94-116 (256)
229 1j1d_C Troponin I, TNI; THIN f 31.8 51 0.0018 22.2 3.6 20 34-53 61-80 (133)
230 2w2u_A Hypothetical P60 katani 31.6 86 0.0029 18.8 4.4 29 24-52 48-81 (83)
231 3ol1_A Vimentin; structural ge 31.5 97 0.0033 19.6 4.7 37 30-66 47-83 (119)
232 3itf_A Periplasmic adaptor pro 31.2 66 0.0023 21.4 4.1 43 28-70 71-128 (145)
233 2wt7_B Transcription factor MA 31.0 1E+02 0.0035 19.5 4.9 29 31-59 55-83 (90)
234 4etp_B Spindle POLE BODY-assoc 31.0 64 0.0022 25.0 4.4 27 27-53 6-32 (333)
235 1r8d_A Transcription activator 30.8 88 0.003 18.7 4.4 26 33-58 77-102 (109)
236 3gaa_A Uncharacterized protein 30.7 70 0.0024 22.3 4.3 26 28-53 218-243 (252)
237 1fmh_B General control protein 30.6 70 0.0024 17.4 3.8 28 32-59 2-29 (33)
238 2vz4_A Tipal, HTH-type transcr 30.5 89 0.0031 18.6 4.3 26 34-59 77-102 (108)
239 3u06_A Protein claret segregat 30.4 55 0.0019 24.9 3.9 20 29-48 15-34 (412)
240 1ik9_A DNA repair protein XRCC 30.3 1.2E+02 0.004 21.3 5.4 26 33-58 134-159 (213)
241 3cve_A Homer protein homolog 1 30.2 64 0.0022 19.8 3.6 16 37-52 6-21 (72)
242 3q8t_A Beclin-1; autophagy, AT 30.2 1E+02 0.0034 19.1 5.4 28 30-57 10-37 (96)
243 3ra3_A P1C; coiled coil domain 29.8 67 0.0023 17.0 3.5 19 32-50 8-26 (28)
244 3s9g_A Protein hexim1; cyclin 29.5 94 0.0032 20.7 4.5 29 32-60 66-94 (104)
245 2v4h_A NF-kappa-B essential mo 29.3 1.3E+02 0.0043 20.0 6.4 31 29-59 43-76 (110)
246 1nkp_A C-MYC, MYC proto-oncoge 29.2 99 0.0034 18.7 4.4 30 29-58 57-86 (88)
247 4g1a_A AQ-C16C19 peptide; heli 29.0 28 0.00095 19.0 1.5 16 39-54 1-16 (32)
248 2rjz_A PILO protein; structura 29.0 49 0.0017 21.6 3.1 29 33-67 17-45 (147)
249 3b5n_D Protein transport prote 28.9 89 0.003 18.1 4.9 29 23-51 23-51 (64)
250 3o0z_A RHO-associated protein 28.8 60 0.0021 22.8 3.6 15 27-41 100-114 (168)
251 2ve7_C Kinetochore protein NUF 28.8 53 0.0018 23.4 3.4 29 32-60 142-170 (250)
252 1txp_A HnRNP C, heterogeneous 28.5 33 0.0011 18.3 1.7 24 28-51 3-26 (28)
253 3q0x_A Centriole protein; cent 28.5 1.7E+02 0.0057 21.2 6.0 39 18-60 162-200 (228)
254 1fzc_C Fibrin; blood coagulati 28.4 85 0.0029 23.5 4.6 29 26-54 20-48 (319)
255 2rn7_A IS629 ORFA; helix, all 28.2 0.065 2.2E-06 32.0 -10.2 23 39-61 72-94 (108)
256 2yko_A LINE-1 ORF1P; RNA-bindi 28.1 77 0.0026 23.3 4.2 21 32-52 7-27 (233)
257 2ve7_C Kinetochore protein NUF 27.7 73 0.0025 22.7 4.0 40 30-69 147-186 (250)
258 2zdi_C Prefoldin subunit alpha 27.6 1.2E+02 0.0042 19.3 4.9 40 15-55 97-136 (151)
259 4gkw_A Spindle assembly abnorm 27.6 1.4E+02 0.0047 21.2 5.4 34 27-60 122-155 (167)
260 3gp4_A Transcriptional regulat 27.6 1.2E+02 0.0042 19.3 5.2 18 35-52 85-102 (142)
261 2wvr_A Geminin; DNA replicatio 27.6 70 0.0024 23.5 3.9 30 30-59 128-157 (209)
262 3pjs_K KCSA, voltage-gated pot 27.6 89 0.003 20.1 4.1 19 34-52 141-159 (166)
263 2a26_A Calcyclin-binding prote 27.3 74 0.0025 18.1 3.3 31 21-51 16-47 (50)
264 1lj2_A NSP3-C, nonstructural R 27.1 51 0.0017 22.2 2.9 18 37-54 12-29 (110)
265 2gr7_A Adhesin; trimeric autot 27.0 74 0.0025 20.9 3.7 53 16-70 17-69 (129)
266 3mq7_A Bone marrow stromal ant 26.3 1.4E+02 0.0048 20.3 5.0 31 30-60 70-100 (121)
267 3a5t_A Transcription factor MA 26.0 3.5 0.00012 27.1 -3.0 28 32-59 59-86 (107)
268 3mud_A DNA repair protein XRCC 26.0 1.8E+02 0.006 20.6 6.6 41 18-59 123-163 (175)
269 3u59_A Tropomyosin beta chain; 25.9 1.2E+02 0.004 18.5 4.7 19 29-47 42-60 (101)
270 1fzc_B Fibrin; blood coagulati 25.9 1E+02 0.0036 22.9 4.7 22 29-50 35-56 (328)
271 3gpv_A Transcriptional regulat 25.7 1.3E+02 0.0046 19.1 5.2 24 34-57 98-121 (148)
272 3qks_A DNA double-strand break 25.7 1.2E+02 0.0039 19.7 4.4 24 31-54 168-191 (203)
273 3e98_A GAF domain of unknown f 25.7 1.2E+02 0.0041 21.3 4.8 22 30-51 71-92 (252)
274 2xv5_A Lamin-A/C; structural p 25.5 1.2E+02 0.004 18.3 4.3 26 39-64 34-59 (74)
275 2js5_A Uncharacterized protein 25.5 49 0.0017 20.5 2.4 25 31-55 3-27 (71)
276 1fzc_B Fibrin; blood coagulati 25.3 1.2E+02 0.0043 22.5 5.0 29 33-61 32-60 (328)
277 2ic9_A Nucleocapsid protein; h 25.2 1E+02 0.0036 20.0 4.1 28 28-55 49-76 (96)
278 1yis_A Adenylosuccinate lyase; 24.9 1.7E+02 0.0059 22.1 5.8 36 19-54 110-145 (478)
279 4adm_A Fumarase C, fumarate hy 24.7 1.3E+02 0.0046 23.4 5.3 37 18-54 162-199 (495)
280 1pwb_A SP-D, PSP-D, pulmonary 24.6 88 0.003 19.5 3.6 20 33-52 33-52 (177)
281 3ra3_B P2F; coiled coil domain 24.6 86 0.003 16.5 3.4 18 37-54 6-23 (28)
282 1htn_A Tetranectin; plasminoge 24.3 45 0.0015 21.0 2.1 22 31-52 22-43 (182)
283 3mud_A DNA repair protein XRCC 24.3 1.7E+02 0.0059 20.6 5.4 32 28-59 125-156 (175)
284 2v4h_A NF-kappa-B essential mo 24.1 69 0.0023 21.4 3.1 11 31-41 62-72 (110)
285 3v86_A De novo design helix; c 24.1 87 0.003 16.4 4.1 21 27-47 3-23 (27)
286 2zhg_A Redox-sensitive transcr 24.0 1.4E+02 0.0047 19.3 4.5 28 34-61 93-120 (154)
287 4dac_A Computationally designe 23.9 90 0.0031 16.5 3.0 23 32-54 2-24 (28)
288 3bs5_B Connector enhancer of k 23.8 27 0.00093 19.9 1.0 19 36-54 62-80 (80)
289 2fxo_A Myosin heavy chain, car 23.8 1.4E+02 0.0049 18.8 4.9 32 28-59 17-55 (129)
290 2cly_B ATP synthase D chain, m 23.8 99 0.0034 20.8 3.9 36 31-66 95-130 (160)
291 4fi5_A Nucleoprotein; structur 23.8 88 0.003 21.0 3.6 25 28-52 66-90 (113)
292 1gxl_A SMC, chromosome segrega 23.7 31 0.0011 21.9 1.3 20 27-46 193-212 (213)
293 3tnu_B Keratin, type II cytosk 23.2 1.5E+02 0.005 18.7 4.7 23 30-52 35-57 (129)
294 3ihr_A Ubiquitin carboxyl-term 22.8 1.3E+02 0.0043 22.8 4.7 36 28-63 258-293 (328)
295 3o39_A Periplasmic protein rel 22.8 1.5E+02 0.0052 18.8 4.5 24 46-70 77-100 (108)
296 4hgv_A Fumarase C, fumarate hy 22.8 1.7E+02 0.0058 22.7 5.5 37 18-54 173-210 (495)
297 1ca9_A TRAF2, protein (TNF rec 22.7 1.2E+02 0.0042 19.5 4.1 30 22-51 5-37 (192)
298 3rvy_A ION transport protein; 22.5 18 0.00062 24.5 0.0 21 31-51 256-276 (285)
299 2j91_A Adenylosuccinate lyase; 22.4 2E+02 0.0068 22.2 5.8 36 19-54 136-171 (503)
300 1lwu_C Fibrinogen gamma chain; 21.4 1.2E+02 0.0039 22.8 4.2 29 26-54 28-56 (323)
301 2dii_A TFIIH basal transcripti 21.3 71 0.0024 19.3 2.5 21 41-62 14-34 (61)
302 3w03_C DNA repair protein XRCC 21.2 1.2E+02 0.0039 21.5 3.9 35 24-59 146-181 (184)
303 3r6n_A Desmoplakin; spectrin r 21.0 1.4E+02 0.0049 22.8 4.7 33 16-50 236-268 (450)
304 1got_B GT-beta; complex (GTP-b 21.0 91 0.0031 20.3 3.2 16 28-43 6-21 (340)
305 2p22_C Protein SRN2; endosome, 21.0 2.1E+02 0.0073 19.7 5.4 38 29-66 84-129 (192)
306 4ani_A Protein GRPE; chaperone 20.8 1.2E+02 0.0042 21.5 4.1 30 31-62 59-88 (213)
307 1j1e_C Troponin I, TNI; THIN f 20.8 1E+02 0.0035 21.8 3.6 19 35-53 62-80 (180)
308 2lf0_A Uncharacterized protein 20.8 35 0.0012 23.3 1.2 11 37-47 9-19 (123)
309 3efg_A Protein SLYX homolog; x 20.7 1.5E+02 0.0051 17.9 4.5 40 21-61 19-58 (78)
310 3fga_D Shugoshin-like 1; PP2A, 20.7 1.4E+02 0.0047 17.4 5.2 32 25-58 13-44 (47)
311 3twe_A Alpha4H; unknown functi 20.6 1.1E+02 0.0036 16.1 3.1 16 31-46 8-23 (27)
312 1r73_A TM1492, 50S ribosomal p 20.6 1.4E+02 0.0047 17.4 4.0 32 33-65 11-42 (66)
313 3tnu_A Keratin, type I cytoske 20.6 1E+02 0.0035 19.6 3.3 18 30-47 37-54 (131)
314 2gkw_A TNF receptor-associated 20.6 1.2E+02 0.0042 19.7 3.8 22 31-52 14-35 (192)
315 1bb1_A Designed, thermostable 20.5 1.2E+02 0.0042 16.7 3.6 21 27-47 12-32 (36)
316 3dgp_B RNA polymerase II trans 20.5 29 0.00098 21.3 0.6 17 31-47 44-60 (71)
317 3kqg_A Langerin, C-type lectin 20.2 1.5E+02 0.005 18.3 3.9 15 34-48 19-33 (182)
318 4aj5_1 SKA3, spindle and kinet 20.2 1.6E+02 0.0055 19.3 4.3 28 27-54 45-72 (101)
No 1
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=100.00 E-value=6.1e-35 Score=190.46 Aligned_cols=58 Identities=55% Similarity=0.735 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCCCCCC
Q psy8521 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPNS 74 (75)
Q Consensus 17 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~~ 74 (75)
||||||+|||||||||||+||++|+||++||++||.||++||+++|||||+||+++-+
T Consensus 1 AMDLVKtHLm~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~q~~l~ 58 (78)
T 1dip_A 1 XMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLS 58 (78)
T ss_dssp -CCSTTTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCSSSSC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999988753
No 2
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=97.43 E-value=0.00011 Score=43.41 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=28.4
Q ss_pred hhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 16 GLSDLVKSHLM--FAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 16 ~AMDLVKsHLm--~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+|+|.+|.||. =.-..+||.||....+|..|+..|..+|.-|+.
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998 446789999999999999999999999988876
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00072 Score=39.65 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..+..|..+++||++|++-|+.||..||+.
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456778999999999999999999999974
No 4
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.02 E-value=0.013 Score=34.85 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..-.+|+.|+....+|..+++.|+.|+..||++.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999864
No 5
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=93.85 E-value=0.16 Score=30.26 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=34.5
Q ss_pred cccc--chhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 11 RLAD--LGLSDLVKSHLMFAVR----EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 11 ~i~~--~~AMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~LE~E 53 (75)
|.++ ++-+++|++-+-=|-. +||+.|++.++||.+.+.+++.+
T Consensus 2 ~~~dPL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 2 PLGSPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444 5778899998888876 79999999999999999988754
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=93.32 E-value=0.11 Score=30.23 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
++.|-.++..|+..|..|..+++.|+..+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555443
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.13 E-value=0.46 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
--.-.+|+.|.....+|..++..|+.|+.-||+.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888888888888888864
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.07 E-value=0.2 Score=32.12 Aligned_cols=30 Identities=43% Similarity=0.528 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQ-------LEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~-------LE~EN~~Lk~ 59 (75)
+.||+.||++-..|...+.. |..||.-||.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55777777777666666666 6667766664
No 9
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.85 E-value=0.13 Score=28.92 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-.|.++..+|+.+++.||.|..-||.+.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45788999999999999999999998754
No 10
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=92.14 E-value=0.43 Score=26.54 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+++...|-.+.+.-.+|+..||++|..|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~ 34 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999999999999865
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.10 E-value=0.3 Score=32.19 Aligned_cols=31 Identities=39% Similarity=0.528 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-+|+++.||.+|++|+..+..|..++..|..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999988888764
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.94 E-value=0.3 Score=28.48 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
|.+.|.+.||.+|.+|.+++..|...
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999988765
No 13
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.84 E-value=0.36 Score=28.06 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
-.+|+.|..+-.+|..+++.|+.|+.-||+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666555543
No 14
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.81 E-value=0.22 Score=29.63 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
++.|..++.+|...|..|+.|...|+..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555554444443
No 15
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=91.45 E-value=0.5 Score=27.41 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 37 KEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
|..+.+|+.++.+|+.||.-|+.-
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999864
No 16
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=91.34 E-value=0.4 Score=31.03 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.+.+-+|=+.|.++|..|.+.++.|+.||.-||.++..-
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999999999987543
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=90.62 E-value=0.49 Score=26.35 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 35 VLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.|.++..+|..+|+.||.|-.-||.+..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5788999999999999999999998764
No 18
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=90.24 E-value=0.14 Score=36.60 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC
Q psy8521 27 FAVREEVEVLKEKIAELMER---INQLEMENSILKANAT 62 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er---~~~LE~EN~~Lk~~as 62 (75)
+.+++|-+.||+++.+|..+ +.+|+.||.-||.+..
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999888865 4567789999998754
No 19
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=89.95 E-value=0.64 Score=31.03 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
+|==||-|+| +||.||..+.|+++.+.++..|+.=
T Consensus 21 LDNEKsal~Y----qVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 21 LDNEKTNFMY----QVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888 7899999999999999999888753
No 20
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.88 E-value=0.45 Score=27.63 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 36 LKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
=|+.|.+|+.++..|+.||.-|+.-++
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777776665443
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.14 E-value=1.1 Score=31.44 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 21 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|+.+.=.|+.|...|.-+...+++++..|+.||.-|
T Consensus 93 eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 93 LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777899999999999999999999999999544
No 22
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.04 E-value=1.8 Score=29.10 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q psy8521 17 LSDLVKSHLMFAVREEV-----EVLKE-------KIAELMERINQLEMENSILKA 59 (75)
Q Consensus 17 AMDLVKsHLm~AVREEV-----EvLKe-------~I~eL~er~~~LE~EN~~Lk~ 59 (75)
--+||+.+|.+-.+-+- .-|+. +|.+|+.++.+|..||..|++
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34788888887765332 23333 899999999999999998875
No 23
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=88.99 E-value=1.1 Score=28.68 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 20 LVKSHLMF--AVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 20 LVKsHLm~--AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
-||+|=.= ||+-||..+|..|.+++.++..||.
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 47777744 9999999999999999999999986
No 24
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.91 E-value=0.61 Score=30.19 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
+.+-+|=+.|.++|..+.+.++.|+.||.-|+.+|..
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999876
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.65 E-value=0.63 Score=26.83 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 37 KEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~Lk~ 59 (75)
|+.|.+|+.++..|+.||.-|+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655554
No 26
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=88.62 E-value=1.1 Score=26.49 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
|.|.==.-=+++|.+|+.++.+|+.||.-|+.-
T Consensus 20 AArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 20 AARRSRARKLQRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333455789999999999999999999863
No 27
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=88.48 E-value=1.1 Score=26.21 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
-.+|+.|+..-.+|...+..|+.|..-|+..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777654
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.17 E-value=0.7 Score=30.99 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~E 53 (75)
.|++.|+++|.+|..++..||.|
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 29
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=88.10 E-value=0.78 Score=33.91 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
.+.+-+|=+.|.++|..|.+.++.|+.||.-||.++..
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999998754
No 30
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.85 E-value=0.74 Score=26.90 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 37 KEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
|+.|.+|+.++..|+.+|.-|+.-+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888888888887644
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.26 E-value=1.2 Score=28.39 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+..|+..|.||.++|..|.+||.-+++
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999988765
No 32
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=87.20 E-value=1 Score=28.87 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=25.1
Q ss_pred hhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLM----------FAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 16 ~AMDLVKsHLm----------~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
+|.+.||.-|. .++++|.+-+++-+..+..|+..||.|
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887775 466778888888888888888888876
No 33
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=87.05 E-value=1.2 Score=24.89 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 35 VLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.|.++..+|..+++.||.|-.-||.+..
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 5778999999999999999999998764
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.85 E-value=1.2 Score=27.37 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+..|..++.+|+..+..|..||..||..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777888888753
No 35
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=86.67 E-value=1.2 Score=27.78 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVR----EEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~LE~E 53 (75)
++-|++||+-+-=|-. +||+.|++.++||.+.+.+++.+
T Consensus 26 ~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 26 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5778899999888876 79999999999999999888744
No 36
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=86.62 E-value=0.91 Score=25.27 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
-.|.+++.||..+++.||.|-.-||.+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3578899999999999999999888764
No 37
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=86.62 E-value=1.9 Score=26.85 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..|+.|...=..|..++.+|+.|...||.+.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666654
No 38
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=86.54 E-value=1.6 Score=27.12 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.||+.==+-=|.+..+++.++..|+.||..|+.-+
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666677777888888888888888887643
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.44 E-value=1.8 Score=27.42 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
-.+|+.|...=..|..++.+|+.|...||.+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777654
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.09 E-value=0.61 Score=29.42 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
++.-.|-.+.+--++|+..||++|..|..
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~ 37 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLA 37 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999998864
No 41
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=85.91 E-value=1.1 Score=34.34 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..++|++.|++++++|++++.+++.|+.-++...
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998887654
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=85.51 E-value=1.8 Score=24.41 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+-.|+.++.||..+++.||.|-.-||.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35688899999999999999998888764
No 43
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=85.51 E-value=2.2 Score=23.61 Aligned_cols=28 Identities=39% Similarity=0.547 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
|+..||..|+-|...+..|..|-..||+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667788888888888888888888876
No 44
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=85.13 E-value=1.8 Score=25.47 Aligned_cols=20 Identities=45% Similarity=0.468 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~ 52 (75)
|..||+-|.||++||..|..
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 56799999999999988764
No 45
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.96 E-value=1.2 Score=24.73 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-.|.++..+|..+++.||.|-.-||.+..
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 35788999999999999999999998754
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.53 E-value=2.6 Score=24.73 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+.+.|..+..+|..+|..|+.+.+-|+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 47
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=84.28 E-value=2.1 Score=30.51 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+||=++-+=++|++|.++|.+|+.||..|+.-.
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777889999999999999999888643
No 48
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=83.29 E-value=1.5 Score=27.90 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-+-+|=+.|.++|..+.+.+..|+.||..|+..+.
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999987764
No 49
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=83.15 E-value=2.4 Score=30.78 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
||=..-.=.+|++|+.+|.+|+.||.-|.+
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556899999999999999988764
No 50
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.05 E-value=2.5 Score=26.84 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.||+.==+-=|.+..++..++.+|+.||..|+.-+
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35655556667777778888888888888777643
No 51
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.02 E-value=0.061 Score=31.70 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 36 LKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..++|++|..+|.+|+.||.+||..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999888764
No 52
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=82.76 E-value=1.4 Score=26.93 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
|.|--..|++.|-.+|..|+.++..|+.+-
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999998763
No 53
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.44 E-value=1.8 Score=24.21 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-.|.++..+|..+++.||.|-.-||.+..
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 45788999999999999999999988654
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.41 E-value=2.2 Score=27.53 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCCCCCC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPNS 74 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~~ 74 (75)
..||..-=.-.+|+.++..|..|-.+||.+. .+.+..+++|-+
T Consensus 76 K~lD~~~l~r~dLE~~iesL~eEl~FLKk~h-eeEl~eLq~qi~ 118 (119)
T 3ol1_A 76 QDVDNASLARLDLERKVESLQEEIAFLKKLH-EEEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCC-
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 3333333345679999999999999999887 456677777654
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.37 E-value=2.6 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+..|+.++.+|...+.+|..||..|++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666654
No 56
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=81.11 E-value=3.1 Score=23.70 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
++.-|+||..|+.+..+|..|-.-
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999988653
No 57
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.10 E-value=2.9 Score=31.60 Aligned_cols=34 Identities=38% Similarity=0.493 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+..+|++.|++++.+|++++.+++.|+.-+++..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888887776543
No 58
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=81.05 E-value=1.8 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERIN 48 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~ 48 (75)
++|.||.|.+-|++++.
T Consensus 15 DIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 15 DIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.69 E-value=6.5 Score=24.58 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 15 LGLSDLVKSHLMFAVREEVE---VLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVE---vLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+..|.-| ..|-+|+++=.| ...++|.+|+.++.+.+.|..-|+.
T Consensus 15 ~~~mgti-~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 15 IEGRGSL-RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp ----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 357788855444 4456899999999999999998875
No 60
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=80.48 E-value=1.9 Score=26.49 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE 51 (75)
+++++..|..+|..|+.++.+|.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555444
No 61
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=80.13 E-value=3.3 Score=23.07 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
-.|.++..+|..+++.|+.|-.-||.+..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 35778899999999999999999998764
No 62
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=79.78 E-value=3.4 Score=24.36 Aligned_cols=27 Identities=26% Similarity=0.094 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-+-|-.+|.+|+...+.+|+|+.-|+.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 355678999999999999999655443
No 63
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=79.77 E-value=5.5 Score=24.20 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVR----EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~LE~ 52 (75)
++-+++||+-+-=|-+ +||++|.+.++||.+.+.+++.
T Consensus 15 ~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 15 LQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899998887875 7999999999999999887753
No 64
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=79.61 E-value=1.7 Score=26.72 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 36 LKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
||++|..|+.++.+|+.+-..|+....|.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~~ 30 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLHAFS 30 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 79999999999999999999888765543
No 65
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=79.06 E-value=2.1 Score=24.15 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+-.|..++.+|+.+++.||.|-.-||.+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34677888889999999998888888654
No 66
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=78.79 E-value=3.6 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..|.+++.||..+++.||.|-.-||.+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3577889999999999999998888753
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.35 E-value=4.8 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
|..|..+.++|+.+|++||.--+.|-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999998777664
No 68
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=78.17 E-value=5.4 Score=22.37 Aligned_cols=32 Identities=38% Similarity=0.463 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
-|..|-|..||||.--|+-+++.|..--+.||
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788899999999999999999887776665
No 69
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.04 E-value=4 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~ 52 (75)
++.|..+|..|+..+.+|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666654
No 70
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=76.04 E-value=5.3 Score=25.71 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.+++.+..+++++.|.+++.+||.|-+-.|
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777778888888888888776654
No 71
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=75.82 E-value=2.8 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~ 52 (75)
|.++.+.|..++.+|.+++..|+.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666665555543
No 72
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=75.15 E-value=2 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
+..|+.|.++|.+|+..+.+|+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666677777766666554
No 73
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=75.08 E-value=3 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy8521 40 IAELMERINQLEMENSILKANA 61 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..||..++.+|+.||.-||.-.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999865
No 74
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=73.34 E-value=10 Score=21.44 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
|-|--|=|.|-..|..-.+++..|..||.-|+.+|
T Consensus 3 ~~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ElA 37 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence 45566777788888888888888888888877654
No 75
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=73.19 E-value=4.2 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~ 52 (75)
.||..||++|+.++.|+.+|..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5888889999888888888753
No 76
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.90 E-value=3.4 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN 54 (75)
+..|++++.+|..++.+|+.||
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555555555555554
No 77
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=72.73 E-value=1.6 Score=25.17 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~L 50 (75)
..++.|.++|..|+..+.+|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655554
No 78
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=71.69 E-value=5.5 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 37 KEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~L 57 (75)
+..|++|+.++..|+.+|.-|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777888887777777654
No 79
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.50 E-value=9.5 Score=21.96 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~E 53 (75)
|-.|++--+++|.+|..|..+||..
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999864
No 80
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=70.88 E-value=8 Score=25.62 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
-+.+++.|+.+|.+|...+..||.|..+
T Consensus 16 ~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 16 SQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777888888664
No 81
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=70.87 E-value=9.8 Score=25.86 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=30.4
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLM--FAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 17 AMDLVKsHLm--~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
-..-||+|=. -|+--||+.+|..|.+|+.++..|+.
T Consensus 48 l~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ 85 (113)
T 1aa0_A 48 LTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQE 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhccccchhhhheeecccccchhhhhhhhHHHHh
Confidence 3456888874 68899999999999999999998874
No 82
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.08 E-value=18 Score=22.57 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREE-------VEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 17 AMDLVKsHLm~AVREE-------VEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.||-||. .|-+.+-| ++.+..++++++.+..++|.|..-|
T Consensus 3 ~MdaIKk-Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL 49 (101)
T 3u1c_A 3 HMDAIKK-KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQL 49 (101)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4666663 44555444 4556666666666666666666555
No 83
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=69.04 E-value=8.1 Score=23.80 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
..|.+++.+|..++.+++.++.-|+..+.-|.+-.++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~D~lTgL~ 39 (206)
T 3i5c_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVNSDGLTGLS 39 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCTTTCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCC
Confidence 4577888899999999999999898888777665554
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.40 E-value=8.6 Score=25.12 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEME--NSILKANATQ 63 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~E--N~~Lk~~asp 63 (75)
-...+|++++.|+-....|.+++..||.+ +..|+.-.+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34577889999988888888888887754 3334444443
No 85
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=68.31 E-value=2.8 Score=30.78 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQETLGQL 69 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 69 (75)
.|+|.|++++.+|++++.+||.+-.-++.. .++.+.++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~-n~~rl~~L 222 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA-NAERLKRL 222 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHH
Confidence 388899999999999999998876555542 35444443
No 86
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=68.14 E-value=2.1 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~L 50 (75)
.+++.|.++|.+|+..+.+|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666555443
No 87
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.12 E-value=14 Score=24.49 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIA 41 (75)
Q Consensus 27 ~AVREEVEvLKe~I~ 41 (75)
|-.+++.+.|+.+|.
T Consensus 71 ~k~~~~~~~L~~~l~ 85 (138)
T 3hnw_A 71 FKAKKMADSLSLDIE 85 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444443333333
No 88
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=67.78 E-value=11 Score=22.96 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+..|+++...|...+.+|..||..|+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777764
No 89
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=66.51 E-value=10 Score=20.79 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 38 EKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 38 e~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..|..|++++.+||....-|++.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888877777653
No 90
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.28 E-value=11 Score=25.92 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
..|+..|+.++.+..+.+.+|..+|..|...+
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 45666666677777777778888887776544
No 91
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.69 E-value=13 Score=20.52 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~E 53 (75)
|.+--....-|.+|..+|..||.+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHH
Confidence 334444455555555555555554
No 92
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.47 E-value=12 Score=22.93 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+..|.++...+.....+|+.+|..|+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666667777777664
No 93
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=65.42 E-value=6.9 Score=23.59 Aligned_cols=20 Identities=30% Similarity=0.286 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8521 40 IAELMERINQLEMENSILKA 59 (75)
Q Consensus 40 I~eL~er~~~LE~EN~~Lk~ 59 (75)
|++|..++..|+.||.-|+.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666555554
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.35 E-value=13 Score=27.45 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+++|++.++.+|.+-.++..++.+||+.+++
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777654
No 95
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=63.72 E-value=9.6 Score=24.37 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.|+.+|++|.++..+|+.|-.-++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777766665554
No 96
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=63.27 E-value=15 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
.|.+||.-||++|++|+++..+++.+-+-+-...|
T Consensus 177 ~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ip 211 (536)
T 3err_A 177 DMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVP 211 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999999999988765554444
No 97
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=62.93 E-value=7.4 Score=25.77 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
+|-..|+|.||++=+|.|++.+.|.
T Consensus 71 l~ykreie~l~~~ekeime~ls~l~ 95 (99)
T 3aei_A 71 LVYKREIEKLKKREKEIMEELSKLR 95 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4668999999999999999998764
No 98
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=62.73 E-value=17 Score=21.23 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-++.|-.++..|-.++.+|..+-+.||.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888888887777775
No 99
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=61.64 E-value=10 Score=23.97 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 35 VLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.|++++++|.+++..++.|...|++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666666666666666666654
No 100
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=61.54 E-value=15 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 35 VLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.|..+..||..++..|+.|-+-||.+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778889999999999888887764
No 101
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.10 E-value=26 Score=21.58 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 17 LSDLVKSHLMFAVREEV-------EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 17 AMDLVKsHLm~AVREEV-------EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.||-||. .|-+.+-|- +.+..++++++.+..++|.|-.-|
T Consensus 3 ~md~iKk-Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL 49 (101)
T 3u59_A 3 SMEAIKK-KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGL 49 (101)
T ss_dssp THHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3666653 455555544 445555555555555555555444
No 102
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.04 E-value=18 Score=27.36 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+..+|+..||++|++|+++..+++.+-.-+-
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888899999888888887765433
No 103
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=60.97 E-value=27 Score=22.69 Aligned_cols=40 Identities=28% Similarity=0.221 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+=|+-+-..|--.|++--..|++.|++|..++.+||.=-+
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366677778888999999999999999999999986433
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.73 E-value=18 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+..+|+..||++|++|+++..+++.+-.-+-...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888899999999999888887765544333
No 105
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=60.13 E-value=11 Score=23.84 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.|-|--.+++...|+++|.++.+++.+|..
T Consensus 6 ~~~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 6 HHRMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466777888999999999999999988863
No 106
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.29 E-value=6.5 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
+.+.+.||++|..|+.+++..+.|..-|+.-+.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456778888888888888888888777765443
No 107
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=59.19 E-value=10 Score=26.89 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELME 45 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~e 45 (75)
+|.+||--. |-..|++++.|+++|.+|++
T Consensus 65 ~aVSL~erQ-~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 65 DAVSLVERQ-VRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp --CHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 455555433 33344444444444444443
No 108
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=59.06 E-value=29 Score=21.42 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
|.+...+++.+..++.+|..++..++.
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~~ 34 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAED 34 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 109
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=58.85 E-value=10 Score=22.48 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
..++++.|+.++.+|..++.+|+..-.-|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888888888877765443
No 110
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.73 E-value=19 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
++.+|+..||++|++|+++..+++.+-.-+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999998888888776443
No 111
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=58.70 E-value=28 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.085 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
++-=.-|-.+|.+|+...++-|+|+.-|..+
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678999999999999997666543
No 112
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=58.54 E-value=24 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+++...|+.|.||...+..|+.|-.-||
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555668888888888888888876665
No 113
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.31 E-value=19 Score=28.40 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+..+|+..||++|++|+++..++|.+-.-+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999888876433
No 114
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=57.79 E-value=5.7 Score=21.54 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
++++.+|.+|..|..+..+++.+-.-+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887777666554443
No 115
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.71 E-value=22 Score=19.54 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
|...|+..||..|+-|.-.+..|.+
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777788888877777766654
No 116
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=57.43 E-value=12 Score=22.26 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
-|.-+|.|...+..-..++..||.||--|-
T Consensus 12 ~Rkk~eeler~lrk~kk~iKklEdeNPWLG 41 (50)
T 1a92_A 12 GRKKLEELERDLRKLKKKIKKLEEDNPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCchh
Confidence 477888888888888899999999996553
No 117
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=57.38 E-value=32 Score=22.68 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|+..|+...+.+|.+|..++..|...-.-|
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665544433
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.19 E-value=33 Score=22.54 Aligned_cols=15 Identities=33% Similarity=0.322 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELME 45 (75)
Q Consensus 31 EEVEvLKe~I~eL~e 45 (75)
..|..|+.+|.+|+.
T Consensus 40 ~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 40 RVVLQLKGHVSELEA 54 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 119
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=56.66 E-value=9.7 Score=22.18 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVR----EEVEVLKEKIAELMERINQ 49 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVR----EEVEvLKe~I~eL~er~~~ 49 (75)
++-+.+|++-+-=|.. +||..|++.+.||...+.+
T Consensus 7 ~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 7 AQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 4567788888877775 8999999999999876643
No 120
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=56.55 E-value=25 Score=20.65 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=28.4
Q ss_pred hhHHHHH---HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVK---SHLMFAVREEV-----EVLKEKIAELMERINQLEME 53 (75)
Q Consensus 16 ~AMDLVK---sHLm~AVREEV-----EvLKe~I~eL~er~~~LE~E 53 (75)
+|.++-+ .+||-|++.|. +.|+.+|++..+|..+|..-
T Consensus 31 eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~ 76 (85)
T 2v6x_A 31 EAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKH 76 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 36777888764 77999999999999998864
No 121
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.09 E-value=16 Score=22.74 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
+=-+-++.|..+|.+..+.+..|..|..-+|+-.+|
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~p 72 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSVIRP 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 333457888888888888888888888777776654
No 122
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=55.28 E-value=18 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 37 KEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-+.+.-+..++..|+.||+-||.
T Consensus 40 s~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 40 SDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhhhhhcc
Confidence 34445556667777778877763
No 123
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=55.21 E-value=8 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSI 56 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~ 56 (75)
+++.|.++|.+|...+..||.|-.+
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDF 26 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDF 26 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777654
No 124
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=54.58 E-value=9.8 Score=24.68 Aligned_cols=16 Identities=56% Similarity=0.625 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAEL 43 (75)
Q Consensus 28 AVREEVEvLKe~I~eL 43 (75)
.+-|||+.||++|.-|
T Consensus 56 QideeV~~LKe~IdaL 71 (83)
T 1zke_A 56 QLSEEVERLKELINAL 71 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999999876
No 125
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=53.91 E-value=25 Score=19.28 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
||-.|...++.-+..|-|||+|-.-|.
T Consensus 2 evaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455666666666666777776655543
No 126
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=53.52 E-value=36 Score=25.08 Aligned_cols=38 Identities=16% Similarity=0.510 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+.
T Consensus 109 nDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~ 146 (359)
T 2fel_A 109 QDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDG 146 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58888999999999999999999999999998887763
No 127
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.81 E-value=12 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy8521 38 EKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 38 e~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+-|+.|..++..|+.|+.-|+.
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4477888888888888887764
No 128
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=52.07 E-value=30 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 21 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+..|+.+..+ -+..++.+|.+|+.++.+||.
T Consensus 41 ~~~h~~~~~~-~i~~~~~~i~~~~~~l~~l~~ 71 (228)
T 1flk_A 41 LESQLSRHDQ-MLSVHDIRLADMDLRFQVLET 71 (228)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 4567777664 477788888888888777664
No 129
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.00 E-value=20 Score=21.86 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREE-----VEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 23 sHLm~AVREE-----VEvLKe~I~eL~er~~~LE~E 53 (75)
.+||-|++.| -+.++.+|.+..+|..+|..-
T Consensus 43 e~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~ 78 (93)
T 1wfd_A 43 DMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKY 78 (93)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888764 467889999999999998765
No 130
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=52.00 E-value=21 Score=22.81 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~E 53 (75)
.+.++..|++++..|...+.+++.+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999865
No 131
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.96 E-value=21 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
|..||.+-=.-.+|+.++.-|..|-.+||.+
T Consensus 55 rkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 55 RQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444455555578888888888888888865
No 132
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=51.90 E-value=22 Score=22.31 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
.++++.|..+|..|..++.+|+
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~ 43 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTN 43 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555544
No 133
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=51.37 E-value=22 Score=21.16 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 36 LKEKIAELMERINQLEMEN 54 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN 54 (75)
|+.+|+.|...|-|||..-
T Consensus 8 lrkkiarlkkdnlqlerde 26 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDE 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhH
Confidence 4555566655555555543
No 134
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=51.37 E-value=17 Score=23.64 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN 54 (75)
+.|++.++||-+++.+||.|-
T Consensus 45 ~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467888888888888877763
No 135
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.05 E-value=24 Score=19.28 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~ 52 (75)
-|||..|..-+.+|.+|+..||.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888899999998875
No 136
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.41 E-value=31 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
|.+-+.|+.+|.+|+-+|.-||....
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 44444555555555555555555443
No 137
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=50.16 E-value=22 Score=22.83 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREE------VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 23 sHLm~AVREE------VEvLKe~I~eL~er~~~LE~ 52 (75)
.+||-|++-| -+.|+.+|.+..+|..+|..
T Consensus 46 e~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 46 QYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788765 57899999999999999986
No 138
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.52 E-value=16 Score=27.66 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
+.+|+..||++|++|+++..+++.+-.-+-...|
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4578888999999999999999887655444333
No 139
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=49.35 E-value=35 Score=19.73 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.+.|+++++++.+++.+|+.--..|.
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666655444443
No 140
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=49.23 E-value=7.8 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 36 LKEKIAELMERINQLEME 53 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~E 53 (75)
|..+|-||+.++.+|+.|
T Consensus 63 LQKKImdLE~~~~~l~~e 80 (88)
T 1uuj_A 63 LQKKVMELESKLNEAKEE 80 (88)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665544
No 141
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=49.18 E-value=20 Score=25.05 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
..++....+.+|--..|.|-.|+.+|-.|+.+|.++-+.+|.-.||.
T Consensus 92 ~s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~~~~~~~~ 138 (140)
T 3iyn_Q 92 RSSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSALKASSPPN 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSCC----
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 46677777778888899999999999999999998888777665553
No 142
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=48.81 E-value=8.1 Score=20.18 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQ 49 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~ 49 (75)
||-+++|+..|++|+..
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788999999998753
No 143
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.60 E-value=32 Score=24.37 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.|++.+.|+.+|.+|+-.|.-||....+.
T Consensus 100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 100 TRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45566666666666666666666655543
No 144
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.28 E-value=28 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=27.8
Q ss_pred hhHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVK---SHLMFAVREE-----VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 16 ~AMDLVK---sHLm~AVREE-----VEvLKe~I~eL~er~~~LE~ 52 (75)
+|..+-+ .+|+-|++.| -+.++.+|.+-.+|..+|..
T Consensus 29 eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 29 DAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 3678888877 57899999999999988754
No 145
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=48.21 E-value=35 Score=19.77 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELM 44 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~ 44 (75)
.-||-+|..+.==||.|+--.|+.|-+-.
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi 35 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAF 35 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888999999999999999999986643
No 146
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.03 E-value=28 Score=29.63 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy8521 42 ELMERINQLEMENSILKAN 60 (75)
Q Consensus 42 eL~er~~~LE~EN~~Lk~~ 60 (75)
+|+++++.|+.||..|++-
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777653
No 147
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.38 E-value=14 Score=22.79 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+..++-+|.+..+=...-...|.+-..||.-
T Consensus 27 ~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkd 57 (86)
T 3swk_A 27 AEDIMRLREKLQEEMLQREEAENTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555444444444444444444443
No 148
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.27 E-value=33 Score=19.54 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 36 LKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+-+.+..|...|..|+.++.-|+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 149
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=47.25 E-value=22 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQ 49 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~ 49 (75)
-.++++.||++|..|++++.+
T Consensus 94 e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777766554
No 150
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=46.77 E-value=45 Score=20.00 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELME-------RINQLEME 53 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~e-------r~~~LE~E 53 (75)
..||.+| +.|=|...|.|.+.+++..|+. |...+|.-
T Consensus 2 ~~m~aiK-kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l 45 (75)
T 3mtu_A 2 ASMDAIK-KKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELI 45 (75)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3577776 4567777777777777777777 66665543
No 151
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=46.72 E-value=35 Score=25.52 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
..+..|..++..|.+|+.+||..-.-++..
T Consensus 28 ~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 28 GSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666665554444443
No 152
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=46.52 E-value=35 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.|++.+..++++|..++.+|..|..-+|.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777665553
No 153
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=46.13 E-value=14 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
.++.++|..|+.++.+|+.+-..|+....|
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l~~~~~~ 48 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELTNKLHAF 48 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 578889999999999999999998875433
No 154
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.16 E-value=47 Score=20.55 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
..+.||..|+-+|.++..+++++...
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34667777777777777777666553
No 155
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=44.89 E-value=52 Score=20.84 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN 54 (75)
.+-|+.|.+++++|+.++.+|..+.
T Consensus 31 ~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 31 PKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 156
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=44.74 E-value=23 Score=26.55 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.-.++..++.|+++|..|+.++.++..
T Consensus 30 I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 30 LRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778899999999999999887754
No 157
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=44.70 E-value=54 Score=24.41 Aligned_cols=37 Identities=14% Similarity=0.350 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|++++.|...+.+|.+....+-.|+
T Consensus 97 nD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~ 133 (403)
T 1dof_A 97 NDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKY 133 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888999999999999999999999999888775
No 158
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=44.50 E-value=27 Score=17.12 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQ 49 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~ 49 (75)
+|.+|+|+..+.+++++
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57788888888888764
No 159
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.04 E-value=29 Score=21.85 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+++|+.+++.|+.|.+.|..|..=..-.+
T Consensus 40 h~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 40 HKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888777654443333
No 160
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=43.86 E-value=27 Score=21.15 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAEL 43 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL 43 (75)
-||.|.||..||..-+.+
T Consensus 12 VYaLkDqV~eL~qe~k~m 29 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKM 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488888888887654443
No 161
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=43.64 E-value=56 Score=24.64 Aligned_cols=37 Identities=11% Similarity=0.393 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 105 nDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~ 141 (451)
T 3c8t_A 105 QDIMDTATVLQIRDGLALISRRIESVRKALAALARNH 141 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5888888999999999999999999999999888776
No 162
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=43.62 E-value=57 Score=24.36 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 94 nD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~ 130 (429)
T 1c3c_A 94 SDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRY 130 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888888999999999999999999999999888776
No 163
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.53 E-value=24 Score=20.40 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQ 49 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~ 49 (75)
.++.|.++|..|+..+.+
T Consensus 49 ~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544433
No 164
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=43.48 E-value=30 Score=23.43 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.++.|+++|.+|..++..||.|-.-+
T Consensus 62 ~leeL~~ki~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 62 KLEELSDKIDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35778888999988888888876543
No 165
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.28 E-value=53 Score=20.33 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.+|.++++..+-++ .+-++.|.+++..+.+++..++.
T Consensus 87 ~eA~~~l~~r~~~l-~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 87 EDAMESIKSQKNEL-ESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777776653 34445555555555555444443
No 166
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=43.25 E-value=57 Score=24.53 Aligned_cols=37 Identities=8% Similarity=0.273 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 111 nD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~ 147 (454)
T 1q5n_A 111 QDILDTACILQCRDALAIVQNQVQQCYETALSQAQTY 147 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888899999999999999999999999999888776
No 167
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=43.11 E-value=58 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.484 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 107 nD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~ 143 (450)
T 1re5_A 107 QDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKH 143 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5888899999999999999999999999999888775
No 168
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=42.96 E-value=57 Score=24.79 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+.
T Consensus 111 nDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~ 148 (462)
T 2e9f_A 111 NDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHL 148 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47888889999999999999999999999999887764
No 169
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=42.78 E-value=48 Score=21.76 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELM---ERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~---er~~~LE~EN~~Lk~~ 60 (75)
...++.||+.|+.+. +++..|+....+++.-
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~D 70 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKAD 70 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 457788888888777 7888888888877753
No 170
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=42.70 E-value=58 Score=24.80 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 116 nDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~ 152 (468)
T 1k7w_A 116 NDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIE 152 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788888999999999999999999999999888775
No 171
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=42.51 E-value=62 Score=24.77 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
-|.|=|=+.+++|+.++.|...+.+|.+....+-.|+.
T Consensus 145 nDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~ 182 (478)
T 1jsw_A 145 NDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQ 182 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999888764
No 172
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.13 E-value=56 Score=20.79 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
++.+.|...+..|..++.+|..||+-+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444
No 173
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.12 E-value=36 Score=21.59 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 35 VLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+.++|..|.+++.+|+.|..-|+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~ 53 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKS 53 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666664
No 174
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=42.10 E-value=66 Score=24.39 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 95 nDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~ 131 (438)
T 4eei_A 95 SDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEET 131 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888899999999999999999999999999887775
No 175
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.91 E-value=70 Score=20.78 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELM---ERINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~---er~~~LE~EN~~Lk~ 59 (75)
-...++.||+.|..+. +++.-|++...+++.
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655 566666666655554
No 176
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.80 E-value=48 Score=20.18 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 35 VLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.=.+.|.+|+..+.+=..|..-||.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~ 46 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKR 46 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666663
No 177
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=41.63 E-value=63 Score=24.38 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 106 nDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~ 142 (444)
T 2pfm_A 106 TDVVDTALSYILKQANEIILKDLENFVSILANKAKEH 142 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888899999999999999999999999999888775
No 178
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=41.13 E-value=56 Score=24.81 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|=|=+.+++|+.++.|...+.+|.+....+-.|+
T Consensus 110 nD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~ 146 (457)
T 1tj7_A 110 NDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNN 146 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3888888999999999999999999999998887775
No 179
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=41.09 E-value=21 Score=23.26 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 35 VLKEKIAELMERINQLEME 53 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~E 53 (75)
.|++.++||-+++.+||.|
T Consensus 46 ~L~e~~keLh~~I~~lEeE 64 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTE 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 180
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=41.07 E-value=32 Score=22.00 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
+++|+.+++.|..|.+.|.+|.
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766666654
No 181
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=41.05 E-value=56 Score=19.44 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+..|+.++..|.+.+.+|+.+..-.+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566677777777777766554433
No 182
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.04 E-value=72 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
....|+..|+..=..|..++..||+.|-=|-
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4567777777777777788888888876553
No 183
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.81 E-value=56 Score=19.35 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy8521 26 MFAVREEVE 34 (75)
Q Consensus 26 m~AVREEVE 34 (75)
|-+++-|.|
T Consensus 8 m~~lk~e~d 16 (81)
T 1ic2_A 8 MQMLKLDKE 16 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 184
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.46 E-value=31 Score=20.25 Aligned_cols=18 Identities=44% Similarity=0.556 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 41 AELMERINQLEMENSILK 58 (75)
Q Consensus 41 ~eL~er~~~LE~EN~~Lk 58 (75)
+.|+..+..||.||.-||
T Consensus 6 aqlenevaslenenetlk 23 (49)
T 3he5_A 6 AQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHH
Confidence 344455555555555444
No 185
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=40.44 E-value=53 Score=19.00 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE 51 (75)
|-++++.|..++.++-.|+..||
T Consensus 21 v~~~l~~Lt~kL~~vt~rle~lE 43 (47)
T 1aq5_A 21 VEELINTLQQKLEAVAKRIEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999998884
No 186
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.98 E-value=37 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 36 LKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
|++.++++..++.+|+.|+.-|++
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555566666666555553
No 187
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=39.84 E-value=67 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|=|=+.+++|++++.|...+.+|.+....+-.|+
T Consensus 142 nDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~~A~~~ 178 (468)
T 3r6q_A 142 NDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEF 178 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999998887775
No 188
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=39.49 E-value=56 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 54 (75)
-|.|=|=+.+++|++++ .|...+.+|.+....+-.|+
T Consensus 141 nD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~ 178 (466)
T 1vdk_A 141 NDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAF 178 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58888999999999998 99999999999999888776
No 189
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.28 E-value=30 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
--++++.+.|++.|++++.++.+++.
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666655543
No 190
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=39.10 E-value=63 Score=19.49 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHhh
Q psy8521 38 EKIAELMERINQLEMENSILKANATQETLG 67 (75)
Q Consensus 38 e~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 67 (75)
..+-.|.++++.|.+||.-|+...-.||-+
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777887777776666543
No 191
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.71 E-value=63 Score=19.34 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
...+.+.++++|.+|.+++..++.+-.-|+
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666555555544443
No 192
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=38.71 E-value=48 Score=23.64 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
...+++.|+++++++.++..++..|-..+|.....|
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE 99 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQE 99 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777666666544433
No 193
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=38.37 E-value=60 Score=24.57 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++ .|...+.+|.+....+-.|+
T Consensus 127 nDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~ 164 (459)
T 3bhg_A 127 EDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQH 164 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58888999999999999 79999999999999888776
No 194
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.93 E-value=72 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEK-----------IAELMERINQLEMENSILK 58 (75)
Q Consensus 30 REEVEvLKe~-----------I~eL~er~~~LE~EN~~Lk 58 (75)
+.||+.||.. |..|..++++||.|..--|
T Consensus 21 kreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 21 YREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665544 5678899999998765533
No 195
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=37.75 E-value=76 Score=24.25 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEV-LKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEv-LKe~I~eL~er~~~LE~EN 54 (75)
-|.|=|=+.+++|++++. |...+.+|.+....+-.|+
T Consensus 141 nD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~ 178 (467)
T 1fur_A 141 NDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAF 178 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588899999999999997 9999999999999888775
No 196
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.69 E-value=58 Score=25.66 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REE-VEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 30 REE-VEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.+| +..||++|++|+++..++|.+-.-+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 8889999999999999998876443
No 197
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=37.50 E-value=63 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++ .|...+..|.+....+-.|+
T Consensus 123 nDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~ 160 (465)
T 2qga_B 123 EDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEY 160 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58888899999999999 89999999999999887775
No 198
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.95 E-value=69 Score=24.02 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~E 53 (75)
.+.+..|++.++.+..++.+|+..
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~ 40 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEK 40 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 199
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.76 E-value=74 Score=19.63 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
--.+++.||.+|.++...+.+|+.|-.-|.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999988888888866554
No 200
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=36.59 E-value=53 Score=23.95 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~L 50 (75)
..++.+.|+++|++|+.....+
T Consensus 190 L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 190 LEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444443333
No 201
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.55 E-value=43 Score=18.82 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEM 52 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~ 52 (75)
|.|.++|.-|+.|+..|..
T Consensus 19 e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555543
No 202
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=36.47 E-value=70 Score=22.46 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
.+.+++..|.+++.+|.+++.+|+..
T Consensus 103 ~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 103 PVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556666666666666666666666
No 203
>2p0s_A ABC transporter, permease protein, putative; APC90123.1, putative ABC transporter, porphyromonas gingiVal structural genomics, PSI-2; 1.60A {Porphyromonas gingivalis} SCOP: c.94.1.3
Probab=35.98 E-value=41 Score=20.77 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--HHHhhcCCCCC
Q psy8521 41 AELMERINQLEMENSILKANAT--QETLGQLPHPN 73 (75)
Q Consensus 41 ~eL~er~~~LE~EN~~Lk~~as--pE~l~q~~~~~ 73 (75)
..|+..++++.....+-....+ +++++++..|-
T Consensus 84 ~~l~~~L~~~~~~~~l~~~gl~~~~~~l~~l~~~v 118 (143)
T 2p0s_A 84 NHISRILSDYLSDKKIASYNIPDIKQILADSKIEL 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCTTHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhCCC
Confidence 3566777777777777777899 99999987763
No 204
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.92 E-value=78 Score=19.60 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~E 53 (75)
+-+.+-+.|..|..|+.+||.|
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3344455566666666665554
No 205
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.70 E-value=20 Score=23.82 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 24 HLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 24 HLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.-=+|++++-+|..--...-+++..|+.||..|..
T Consensus 70 q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 70 QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 444477888888887777788888888888888764
No 206
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=35.70 E-value=70 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|+.++ .|...+.+|.+....+-.|+
T Consensus 124 nDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~ 161 (462)
T 2ptr_A 124 EDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQY 161 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58888999999999999 59999999999999888775
No 207
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=35.45 E-value=12 Score=20.12 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q psy8521 38 EKIAELMERINQLE 51 (75)
Q Consensus 38 e~I~eL~er~~~LE 51 (75)
..|..|++++.+||
T Consensus 52 ~~~~~Le~rl~~LE 65 (66)
T 1d66_A 52 AHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHc
Confidence 45666666666665
No 208
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.44 E-value=79 Score=19.53 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.-+..+.|+.+|+.|.+++..|+..-..++...
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888777766666543
No 209
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=35.32 E-value=44 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN 54 (75)
|.|+.+|..|+.+++.++..=
T Consensus 5 e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665543
No 210
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=35.10 E-value=76 Score=19.23 Aligned_cols=30 Identities=23% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKI-------AELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I-------~eL~er~~~LE~EN~~Lk 58 (75)
--+|...||+++ ++|+.++.+|.+|-+-|-
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 577788888877776664
No 211
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.10 E-value=87 Score=19.93 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8521 39 KIAELMERINQLEMENSILKA 59 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN~~Lk~ 59 (75)
..++|-+++.+|+.|++.||.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777765
No 212
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.57 E-value=1.1e+02 Score=23.04 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+-+++..|+++++.+..++.+|+..=.-|+.
T Consensus 23 ~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 23 SHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666554444433
No 213
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=34.41 E-value=73 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|++++.|...+.+|.+....+..|+
T Consensus 162 NDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~e~ 198 (478)
T 3ocf_A 162 NDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREF 198 (478)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6889999999999999999999999999999888775
No 214
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=34.02 E-value=73 Score=20.00 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+.|+++++++.+++.+|+.--..|.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~ 106 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLL 106 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655544443
No 215
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.84 E-value=86 Score=22.00 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.++++.+-++|.+|.++..+|+.|..-|+..
T Consensus 98 e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 98 EAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3458888899999999999999998888765
No 216
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=33.83 E-value=24 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 39 KIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
.+.|.+|++..+|.+.+-||.-.
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788889999999999998643
No 217
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=33.79 E-value=64 Score=19.90 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEME 53 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~E 53 (75)
+.+.++++++.+++..||.+
T Consensus 114 ~~l~~~~~~l~~~l~~le~~ 133 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLERM 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777654
No 218
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.30 E-value=83 Score=19.39 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+-.---++.|+..|.+|..++.++..+.+-++.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445556778888888888888888877776654
No 219
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=33.07 E-value=79 Score=24.53 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVE-VLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEVE-vLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+.+++|++++ .|...+.+|.+....+-.|+
T Consensus 166 NDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~e~ 203 (488)
T 1yfm_A 166 NDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEF 203 (488)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58888889999999998 99999999999999887775
No 220
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=33.01 E-value=90 Score=21.06 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
++|...+-.|+++|..++-.||.|-.-||.+
T Consensus 75 hkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 75 HKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677777788899999999998888877765
No 221
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.90 E-value=79 Score=18.77 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
..|+.-++.-.-+. -.+++.|.+++..+..++..++.
T Consensus 69 ~ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 69 DKAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544443 44555555555555555555543
No 222
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.83 E-value=96 Score=19.71 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+.-+|.|+ -+|++.-+++|++|++.+.+...
T Consensus 42 L~~LKkkl----~~el~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 42 LAALKKHK----ENEISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456665 56777777777777777766544
No 223
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=32.58 E-value=54 Score=18.21 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQ 49 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~ 49 (75)
-|+.||+...||.|+-...-+.|
T Consensus 12 aaieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 12 AAIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777766554443
No 224
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.44 E-value=70 Score=20.14 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
.=+.+|.-|+.+|++|...+..+-.
T Consensus 49 ~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 49 SRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999888776544
No 225
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=32.39 E-value=32 Score=21.31 Aligned_cols=16 Identities=38% Similarity=0.599 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMER 46 (75)
Q Consensus 31 EEVEvLKe~I~eL~er 46 (75)
.|||.--++|+||++=
T Consensus 44 qeveiwtnrikeledw 59 (67)
T 2nr5_A 44 QEVEIWTNRIKELEDW 59 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5999999999999873
No 226
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.27 E-value=78 Score=18.55 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+..+.+.+.|+.|+.+...++.+-.
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544444433
No 227
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.03 E-value=66 Score=21.52 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+=+.+|..|+.+|++|...+...-.
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999888776543
No 228
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.84 E-value=1.1e+02 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~L 50 (75)
|...|++.++.+|..|++++..+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444433
No 229
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=31.77 E-value=51 Score=22.23 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEME 53 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~E 53 (75)
+.|++.+++|-+++.+||.|
T Consensus 61 ~~L~e~~keLh~~I~~LEeE 80 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEE 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555
No 230
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=31.63 E-value=86 Score=18.80 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8521 24 HLMFAVREE-----VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 24 HLm~AVREE-----VEvLKe~I~eL~er~~~LE~ 52 (75)
.|+-|++.| -+.++.+|.+-++|..+|..
T Consensus 48 ~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~ 81 (83)
T 2w2u_A 48 VLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKE 81 (83)
T ss_dssp HHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777766 35789999999999998864
No 231
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.47 E-value=97 Score=19.64 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQETL 66 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 66 (75)
+.++|.+|.+..+-...-..+|.+-..||.-+....+
T Consensus 47 ~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l 83 (119)
T 3ol1_A 47 AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 4555556655555444445555555555554444333
No 232
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=31.21 E-value=66 Score=21.43 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------hcCCHHHhhcCC
Q psy8521 28 AVREEVEVL-------KEKIAELMERINQLEMENSILK--------ANATQETLGQLP 70 (75)
Q Consensus 28 AVREEVEvL-------Ke~I~eL~er~~~LE~EN~~Lk--------~~aspE~l~q~~ 70 (75)
..|+++-.| ..++..|.+++.++..+-.+.+ +..+|||-+||.
T Consensus 71 ~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~ql~ 128 (145)
T 3itf_A 71 SELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLN 128 (145)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 445555444 4566677777776666654443 368999988763
No 233
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.05 E-value=1e+02 Score=19.53 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.|+..|..+|..|...++++..|-..+|+
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777765
No 234
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.02 E-value=64 Score=25.05 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
-||-+|.+.|+..+++++++-+..|..
T Consensus 6 ~~~~~e~~~~~~~~~~vq~kA~~~E~~ 32 (333)
T 4etp_B 6 AALEKEIAALEKEIAALEKEISKQEKF 32 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999988887765
No 235
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=30.82 E-value=88 Score=18.65 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
.+.|++++..|.+++.+|+.--..|.
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777665544443
No 236
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=30.72 E-value=70 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEME 53 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~E 53 (75)
..+|+-+..+++|++|.++..+.+.|
T Consensus 218 ~L~e~Ae~~e~~i~~l~e~~~~~~~~ 243 (252)
T 3gaa_A 218 LLEEQVKALDEQIKKIEEQYKELQEK 243 (252)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788888889999999988886554
No 237
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=30.58 E-value=70 Score=17.44 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
||..||.++..|..||-.-.+.-..||.
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6788888888888888777666666654
No 238
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=30.50 E-value=89 Score=18.65 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.|++++.+|.+++.+|+.--..|..
T Consensus 77 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 77 AHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776665554443
No 239
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.36 E-value=55 Score=24.87 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERIN 48 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~ 48 (75)
+++..+.|+++|+++.+.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444443
No 240
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.31 E-value=1.2e+02 Score=21.33 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
+..|+.++..|.+++..|+.+.+-|+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665544
No 241
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.23 E-value=64 Score=19.83 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 37 KEKIAELMERINQLEM 52 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~ 52 (75)
-.++.+++.+|..||.
T Consensus 6 ~~kLq~~E~~N~~Le~ 21 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEG 21 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 3344444444444443
No 242
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.20 E-value=1e+02 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~L 57 (75)
.+|+..|+..=++|...+..||.|+..+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l 37 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVV 37 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444445555455555555555554444
No 243
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.84 E-value=67 Score=16.98 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQL 50 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~L 50 (75)
|-+.|..+|+-|..++..|
T Consensus 8 endaleqkiaalkqkiasl 26 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 4555666666666665544
No 244
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.50 E-value=94 Score=20.72 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
-|..|...|..|-..|..|-+||..-++-
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46778888888999999999999887764
No 245
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.34 E-value=1.3e+02 Score=20.05 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q psy8521 29 VREEVEVLKEKIAELME---RINQLEMENSILKA 59 (75)
Q Consensus 29 VREEVEvLKe~I~eL~e---r~~~LE~EN~~Lk~ 59 (75)
--.+++.||+.|..+.+ ++.-|++...++|.
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA 76 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666 67777777766664
No 246
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.17 E-value=99 Score=18.72 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
..++...+...+..|..++.+|..+-.-|+
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555556666666666666555544
No 247
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=28.98 E-value=28 Score=18.98 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 39 KIAELMERINQLEMEN 54 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN 54 (75)
||+-|+.++..||+-+
T Consensus 1 qiaaleqkiaaleqkc 16 (32)
T 4g1a_A 1 QIAALEQKIAALEQKC 16 (32)
T ss_dssp -CHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4566666666666654
No 248
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=28.96 E-value=49 Score=21.55 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhh
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANATQETLG 67 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 67 (75)
.+.||+|+++++.+..+ +++++.+++.+.
T Consensus 17 L~~l~~ql~~l~~~l~~------l~~~LP~~~em~ 45 (147)
T 2rjz_A 17 LEAYKAQMKEMEESFGA------LLRQLPSDTEVP 45 (147)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHTTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHhCCChhHHH
Confidence 45566666666666544 345555555544
No 249
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=28.92 E-value=89 Score=18.13 Aligned_cols=29 Identities=10% Similarity=0.384 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 23 SHLMFAVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 23 sHLm~AVREEVEvLKe~I~eL~er~~~LE 51 (75)
.|+..|...|+|.=-++|..+.++.....
T Consensus 23 k~ma~~mg~Eid~QN~~ldrI~~k~d~~d 51 (64)
T 3b5n_D 23 KKMALTTGKELDSQQKRLNNIEESTDDLD 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999998876543
No 250
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=28.82 E-value=60 Score=22.80 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIA 41 (75)
Q Consensus 27 ~AVREEVEvLKe~I~ 41 (75)
-+..+|++-+|+++.
T Consensus 100 ~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 100 TSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 251
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.75 E-value=53 Score=23.38 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
+++.+-++..++.+++.+|+.||+-+++.
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~ 170 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMK 170 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666555443
No 252
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=28.50 E-value=33 Score=18.30 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE 51 (75)
|+..|.-..|.+|.-|-++..+.+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567788889999999888776654
No 253
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.49 E-value=1.7e+02 Score=21.17 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
=+.+|.|+.|-.. .+|++...|..++.+...|++-++..
T Consensus 162 de~Ik~yLa~R~~----~lK~kl~~l~~~L~~~~~e~~s~~~~ 200 (228)
T 3q0x_A 162 DSVVKQFLAFRLS----EVKGTCHDLSDDLSRTRDDRDSMVAQ 200 (228)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999988654 68888889999999998888877654
No 254
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=28.38 E-value=85 Score=23.51 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
....++.++.++++|.+|..++.+|+.-+
T Consensus 20 i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 20 IRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557788889999999999999987643
No 255
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.19 E-value=0.065 Score=32.04 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 39 KIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+|++|..+|.+|+.||.+||...
T Consensus 72 e~~~L~~e~~~L~~e~~iLKka~ 94 (108)
T 2rn7_A 72 RLKEPERENRELRRSNDILRLAS 94 (108)
T ss_dssp CCCCCCSCCCCCSCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788888877653
No 256
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=28.09 E-value=77 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~ 52 (75)
-|+.+.|+|.+|++++.++.+
T Consensus 7 Rvd~~EErIs~le~rleei~q 27 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKR 27 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888766654
No 257
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.65 E-value=73 Score=22.66 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcC
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKANATQETLGQL 69 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 69 (75)
-.+.|.++++|+.|.+.++.++.+-.-|+...+.++-+.+
T Consensus 147 ~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~ 186 (250)
T 2ve7_C 147 LWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTI 186 (250)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHSCC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4577889999999999999999988888887776655444
No 258
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.61 E-value=1.2e+02 Score=19.29 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 15 LGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 15 ~~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
.+|.+.++..+-++ .+.++.|.+.|.++.+++..++..=.
T Consensus 97 ~eA~~~l~~ri~~l-~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 97 DEAISFLEKRLKEY-DEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888887764 56677777777777777776665533
No 259
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.60 E-value=1.4e+02 Score=21.24 Aligned_cols=34 Identities=41% Similarity=0.423 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
=+.|.|.|-=|=+.+|-|+-...|..||.-+|..
T Consensus 122 G~LrKELEdEklK~~E~MdSFE~LkvENE~vker 155 (167)
T 4gkw_A 122 GILRKELENEKLKAAENMDSFEKLSMENENLKEK 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 4679999998889999999999999999988854
No 260
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.60 E-value=1.2e+02 Score=19.27 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 35 VLKEKIAELMERINQLEM 52 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~ 52 (75)
.|++++.+|.+++.+|+.
T Consensus 85 ~L~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQE 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444433333
No 261
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.57 E-value=70 Score=23.49 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
.+|+..||+...+|.+-..+++.=-++|+.
T Consensus 128 ~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 128 DNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443444443
No 262
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.55 E-value=89 Score=20.08 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEM 52 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~ 52 (75)
+.+..+|.+|.++...||.
T Consensus 141 ~~l~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 141 EAYTRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544
No 263
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=27.28 E-value=74 Score=18.13 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8521 21 VKSHLMFAVREEV-EVLKEKIAELMERINQLE 51 (75)
Q Consensus 21 VKsHLm~AVREEV-EvLKe~I~eL~er~~~LE 51 (75)
+|.=+.-|-|.=| ++|...|.+++.+++.++
T Consensus 16 l~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 16 VKVLLEKATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666777777666 678888999888887664
No 264
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=27.15 E-value=51 Score=22.21 Aligned_cols=18 Identities=39% Similarity=0.362 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 37 KEKIAELMERINQLEMEN 54 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN 54 (75)
...|.+|+++++++|.|-
T Consensus 12 Q~~In~lq~~~~klE~dl 29 (110)
T 1lj2_A 12 QAHIAELQVYNNKLERDL 29 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467999999999999873
No 265
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=27.00 E-value=74 Score=20.91 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
++-|.|----.++|-..|..+..+|..|..++.+++.|-+ ...|+-=-++.++
T Consensus 17 ~~tdAVNg~QL~~v~~~v~~~~~~in~L~~~I~~~~k~a~--aGiA~A~A~A~LP 69 (129)
T 2gr7_A 17 LVPRGSNGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRAD--AGTASALAASQLP 69 (129)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCC
Confidence 3445554444566777777888999999999999887643 2334433444443
No 266
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.26 E-value=1.4e+02 Score=20.29 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy8521 30 REEVEVLKEKIAELMERINQLEMENSILKAN 60 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 60 (75)
.+.|+.|+..|++|..++...+.|-.-||..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557778888888888777777777777654
No 267
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=26.01 E-value=3.5 Score=27.14 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 32 EVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
+.+.|...+..|..++.+|..||..|+.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~ 86 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKL 86 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666553
No 268
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.95 E-value=1.8e+02 Score=20.55 Aligned_cols=41 Identities=12% Similarity=0.317 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 18 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
-++++.=+.||.| .|..|..+|..|++++.....+|..+..
T Consensus 123 aE~ireli~~Aer-tV~kLqkeiD~LEDeL~~eKek~k~i~~ 163 (175)
T 3mud_A 123 AEVIRELICYCLD-TTAKNEKSIDDLEEKVAHAKEENLNMHQ 163 (175)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778887 4778888888888888888777776654
No 269
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.92 E-value=1.2e+02 Score=18.54 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERI 47 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~ 47 (75)
+-+||..|+.+|.-|++..
T Consensus 42 ~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443
No 270
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=25.86 E-value=1e+02 Score=22.92 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 29 VREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~L 50 (75)
+...++.|+++|..|+.++.++
T Consensus 35 Lq~~le~l~~KIq~Le~~v~~~ 56 (328)
T 1fzc_B 35 LRSILENLRSKIQKLESDVSAQ 56 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666554
No 271
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.72 E-value=1.3e+02 Score=19.10 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERINQLEMENSIL 57 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~L 57 (75)
+.|++++.+|.+++.+|+.--..|
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L 121 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKI 121 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444443
No 272
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=25.71 E-value=1.2e+02 Score=19.66 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN 54 (75)
+..+.|++.++++..++.+|+...
T Consensus 168 ~~~~~l~~~~~~~~~~~~~l~~~~ 191 (203)
T 3qks_A 168 TAYKKLSELKKTINNRIKEYRDIL 191 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777544
No 273
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=25.70 E-value=1.2e+02 Score=21.33 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE 51 (75)
..-++.|+++|++|++++.+|-
T Consensus 71 erQ~~~LR~r~~~Le~~L~~Li 92 (252)
T 3e98_A 71 ERQVRLLRERNIEMRHRLSQLM 92 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888887764
No 274
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.54 E-value=1.2e+02 Score=18.33 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy8521 39 KIAELMERINQLEMENSILKANATQE 64 (75)
Q Consensus 39 ~I~eL~er~~~LE~EN~~Lk~~aspE 64 (75)
.-.+|++--..|+.|-+-+|.+.--|
T Consensus 34 EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 34 EYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455555667888887777765443
No 275
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=25.49 E-value=49 Score=20.52 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
++++.||.+|+.|..+-.|...+--
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLH 27 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLH 27 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788899999999888887765533
No 276
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=25.30 E-value=1.2e+02 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+..|+.++.+|..|+.+||..-.-++..+
T Consensus 32 I~~Lq~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 32 LRVLRSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67799999999999999999877666553
No 277
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.25 E-value=1e+02 Score=20.05 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENS 55 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~ 55 (75)
+=+.+|..|+.+|++|...+...-.+-.
T Consensus 49 ~R~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 49 SRRAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467899999999999998887766443
No 278
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=24.90 E-value=1.7e+02 Score=22.12 Aligned_cols=36 Identities=14% Similarity=0.379 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 19 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 19 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
|.+=+-.++.+|++++.|...+.+|.+....+-.|+
T Consensus 110 Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~ 145 (478)
T 1yis_A 110 FVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKN 145 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 433344458899999999999999999999887775
No 279
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=24.71 E-value=1.3e+02 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 54 (75)
-|.|=|=+.+++|+++ +.|...+.+|.+....+-.|+
T Consensus 162 NDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~e~ 199 (495)
T 4adm_A 162 NDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDW 199 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999998 579999999999998887775
No 280
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=24.60 E-value=88 Score=19.50 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 33 VEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~ 52 (75)
++.|..+|.+|..++.+|+.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44555566666666555543
No 281
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.57 E-value=86 Score=16.53 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 37 KEKIAELMERINQLEMEN 54 (75)
Q Consensus 37 Ke~I~eL~er~~~LE~EN 54 (75)
|.+-+.|...+..||.|-
T Consensus 6 kqknarlkqeiaaleyei 23 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 333333333333444433
No 282
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=24.30 E-value=45 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~ 52 (75)
..++.|+.+|..|..++..|..
T Consensus 22 ~~~~~L~~~~~~l~~~l~~l~~ 43 (182)
T 1htn_A 22 KMFEELKSRLDTLSQEVALLKE 43 (182)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777666666654
No 283
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.29 E-value=1.7e+02 Score=20.60 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 59 (75)
++||=+..--.+++.|+..|..||.|+...|.
T Consensus 125 ~ireli~~AertV~kLqkeiD~LEDeL~~eKe 156 (175)
T 3mud_A 125 VIRELICYCLDTTAKNEKSIDDLEEKVAHAKE 156 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556677777777777777665553
No 284
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.12 E-value=69 Score=21.36 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIA 41 (75)
Q Consensus 31 EEVEvLKe~I~ 41 (75)
|.|.+||.|+.
T Consensus 62 E~I~vLkaQv~ 72 (110)
T 2v4h_A 62 ETVPVLKAQAD 72 (110)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35667766653
No 285
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.12 E-value=87 Score=16.41 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERI 47 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~ 47 (75)
|-...||-.||-.+..|.+.+
T Consensus 3 yqlkdevgelkgevralkdev 23 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHH
Confidence 344555555555555544444
No 286
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=24.03 E-value=1.4e+02 Score=19.29 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 34 EVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 34 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
++|.+++++|.+++.+|+.--..|....
T Consensus 93 ~ll~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 93 QLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555443
No 287
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.86 E-value=90 Score=16.47 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 32 EVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 32 EVEvLKe~I~eL~er~~~LE~EN 54 (75)
||-.|...++.|+..+..||-|-
T Consensus 2 evykldanvkrlekevgklegev 24 (28)
T 4dac_A 2 EVYKLDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeccccHHHHHHHHhhhhhhh
Confidence 45567778888888888888774
No 288
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=23.85 E-value=27 Score=19.92 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 36 LKEKIAELMERINQLEMEN 54 (75)
Q Consensus 36 LKe~I~eL~er~~~LE~EN 54 (75)
+...|..|...+..|+.||
T Consensus 62 il~~I~~L~~~~~~l~~e~ 80 (80)
T 3bs5_B 62 ILEAVDLLCALNYGLETEN 80 (80)
T ss_dssp HHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHhhhccccCC
Confidence 4456778888888888887
No 289
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.83 E-value=1.4e+02 Score=18.84 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q psy8521 28 AVREEVEVLKEKIA-------ELMERINQLEMENSILKA 59 (75)
Q Consensus 28 AVREEVEvLKe~I~-------eL~er~~~LE~EN~~Lk~ 59 (75)
+.-+++..|++++. +|++++.+|..|-+-|..
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666766664 666666677666665543
No 290
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=23.78 E-value=99 Score=20.84 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANATQETL 66 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 66 (75)
+-+...++.+++-..++..||.|-.-++..-|-++|
T Consensus 95 ~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~P~~~m 130 (160)
T 2cly_B 95 EDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQM 130 (160)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhC
Confidence 445556777777788888888888888777666554
No 291
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.77 E-value=88 Score=21.02 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~ 52 (75)
+=+.+|..|+.+|++|...+...-.
T Consensus 66 ~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 66 DREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999888765543
No 292
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=23.69 E-value=31 Score=21.94 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMER 46 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er 46 (75)
++.+.|++.|+++|++++.+
T Consensus 193 l~~~~el~~l~~~l~~~~~~ 212 (213)
T 1gxl_A 193 FERRIKLKHLEQEMEETERQ 212 (213)
T ss_dssp THHHHHHHHHHHHHC-----
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 45567888888887777654
No 293
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.16 E-value=1.5e+02 Score=18.69 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~~~LE~ 52 (75)
++|+-.|+-+|..|.-.+..+..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~ 57 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKK 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443333
No 294
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=22.81 E-value=1.3e+02 Score=22.76 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy8521 28 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 63 (75)
Q Consensus 28 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 63 (75)
.+..|+..|++.|.+-++|-.+-..||..=|-+.-|
T Consensus 258 ~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~p 293 (328)
T 3ihr_A 258 AIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLP 293 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence 457788889999999999999999999876666554
No 295
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=22.79 E-value=1.5e+02 Score=18.75 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHhhcCC
Q psy8521 46 RINQLEMENSILKANATQETLGQLP 70 (75)
Q Consensus 46 r~~~LE~EN~~Lk~~aspE~l~q~~ 70 (75)
.+..++..|.++ ++.+|||-++|.
T Consensus 77 ~v~~~r~~~qmy-~lLTPEQk~q~~ 100 (108)
T 3o39_A 77 MLAHMETQNKIY-NILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHHHH-TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 355566667766 578999988764
No 296
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=22.77 E-value=1.7e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8521 18 SDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 18 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 54 (75)
-|.+=|=+..++++++ +.|...+..|.+....+..|.
T Consensus 173 nDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~ 210 (495)
T 4hgv_A 173 NDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAF 210 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888888899999887 689999999999988887775
No 297
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=22.68 E-value=1.2e+02 Score=19.46 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=15.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy8521 22 KSHLMFAVR---EEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 22 KsHLm~AVR---EEVEvLKe~I~eL~er~~~LE 51 (75)
..||...|+ .=+-..+.+|.+|++++..+|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555553 223334555666666666555
No 298
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=22.48 E-value=18 Score=24.51 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLE 51 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE 51 (75)
+|.+.+.+++++|.+++.+|+
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~ 276 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELK 276 (285)
T ss_dssp ---------------------
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444444
No 299
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=22.45 E-value=2e+02 Score=22.15 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 19 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 19 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
|.+=+=.++.+|+.++.|...+.+|.+....+-.|+
T Consensus 136 Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~ 171 (503)
T 2j91_A 136 YVGDNTDLIILRNALDLLLPKLARVISRLADFAKER 171 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344458899999999999999999999887775
No 300
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.36 E-value=1.2e+02 Score=22.83 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 26 MFAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 26 m~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
....++.++.++.+|.+|..++.+|+..+
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788889999999999999888654
No 301
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=21.33 E-value=71 Score=19.25 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy8521 41 AELMERINQLEMENSILKANAT 62 (75)
Q Consensus 41 ~eL~er~~~LE~EN~~Lk~~as 62 (75)
+||++|+.- .+||.-|+++..
T Consensus 14 ~ELe~k~rl-L~eN~~L~qLyk 34 (61)
T 2dii_A 14 KELEEKNRM-LQEDPVLFQLYK 34 (61)
T ss_dssp HHHHHHHHH-HHHCHHHHHHHH
T ss_pred HhHHHHHHH-HHhCHHHHHHHH
Confidence 567777654 467777776543
No 302
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.15 E-value=1.2e+02 Score=21.46 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q psy8521 24 HLMFAVREEVEVLKEKIAELMERINQLEME-NSILKA 59 (75)
Q Consensus 24 HLm~AVREEVEvLKe~I~eL~er~~~LE~E-N~~Lk~ 59 (75)
=+.|++ +-+..|++++..|...|..|..| |..+++
T Consensus 146 lid~~l-d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 146 LICYCL-DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 45788999999999999999988 444443
No 303
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=21.03 E-value=1.4e+02 Score=22.84 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 16 GLSDLVKSHLMFAVREEVEVLKEKIAELMERINQL 50 (75)
Q Consensus 16 ~AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~L 50 (75)
.+.+|.|.|.. ..++++..+.+|..|.++-..|
T Consensus 236 ~~e~LLkkh~~--le~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 236 HLLEQIKELEK--EREKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999985 5889999999999998876654
No 304
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.02 E-value=91 Score=20.33 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 28 AVREEVEVLKEKIAEL 43 (75)
Q Consensus 28 AVREEVEvLKe~I~eL 43 (75)
+++.|.+.|+++|.+.
T Consensus 6 ~l~~~~~~l~~~~~~~ 21 (340)
T 1got_B 6 QLRQEAEQLKNQIRDA 21 (340)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 305
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.97 E-value=2.1e+02 Score=19.75 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhcCCHHHh
Q psy8521 29 VREEVEVLKEKIAELMERINQLEMENSIL--------KANATQETL 66 (75)
Q Consensus 29 VREEVEvLKe~I~eL~er~~~LE~EN~~L--------k~~aspE~l 66 (75)
--..++.+|.+|.++.+...+|+.+-..- -...||+.|
T Consensus 84 l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L 129 (192)
T 2p22_C 84 NFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIAL 129 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 33455666666667777777776665333 245666655
No 306
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.84 E-value=1.2e+02 Score=21.50 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8521 31 EEVEVLKEKIAELMERINQLEMENSILKANAT 62 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 62 (75)
+|++.|+.+|.+|..++..+. +.+||..|-
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~--d~~lR~~AE 88 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEME--HRYLRLYAD 88 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 677888888888888887764 556766553
No 307
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.84 E-value=1e+02 Score=21.85 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8521 35 VLKEKIAELMERINQLEME 53 (75)
Q Consensus 35 vLKe~I~eL~er~~~LE~E 53 (75)
.|++.+++|-+++.+||.|
T Consensus 62 ~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 62 ELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444544444444444
No 308
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.78 E-value=35 Score=23.34 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy8521 37 KEKIAELMERI 47 (75)
Q Consensus 37 Ke~I~eL~er~ 47 (75)
|..|..|-+|.
T Consensus 9 K~Eiq~L~drL 19 (123)
T 2lf0_A 9 KNEIKRLSDRL 19 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 309
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.75 E-value=1.5e+02 Score=17.86 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy8521 21 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 61 (75)
Q Consensus 21 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 61 (75)
+-+.+.|.= .-+|.|-..|.+....+..|+.+...|..-.
T Consensus 19 LE~klAfqE-~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 19 LETRLSFQE-QALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444432 3467777777777777777777777776543
No 310
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=20.67 E-value=1.4e+02 Score=17.43 Aligned_cols=32 Identities=34% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 25 LMFAVREEVEVLKEKIAELMERINQLEMENSILK 58 (75)
Q Consensus 25 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 58 (75)
-|+|+-=|.| |++.++-.+-+-||..|+..|.
T Consensus 13 r~LalALe~E--k~Kvr~Aq~~ILqLkrE~q~L~ 44 (47)
T 3fga_D 13 KMLVLALENE--KSKVKEAQDIILQLRKECYYLT 44 (47)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444 7778899999999999999886
No 311
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.63 E-value=1.1e+02 Score=16.07 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMER 46 (75)
Q Consensus 31 EEVEvLKe~I~eL~er 46 (75)
.|.|.|.|++..|..+
T Consensus 8 keledlqerlrklrkk 23 (27)
T 3twe_A 8 KELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555444
No 312
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.62 E-value=1.4e+02 Score=17.39 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy8521 33 VEVLKEKIAELMERINQLEMENSILKANATQET 65 (75)
Q Consensus 33 VEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 65 (75)
.+.|.+++.+|....-.|...... .++-.|-.
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q~at-gql~n~~~ 42 (66)
T 1r73_A 11 DEELKNLLEEKKRQLMELRFQLAM-GQLKNTSL 42 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-cCccCcHH
Confidence 356777777777776666665554 44444433
No 313
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.59 E-value=1e+02 Score=19.56 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8521 30 REEVEVLKEKIAELMERI 47 (75)
Q Consensus 30 REEVEvLKe~I~eL~er~ 47 (75)
++|+-.|+-+|..|.-.+
T Consensus 37 k~Ei~elrr~iq~L~~el 54 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIEL 54 (131)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334434444433333333
No 314
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.56 E-value=1.2e+02 Score=19.74 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERINQLEM 52 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~~~LE~ 52 (75)
..+..++.+|.+|+.++..+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 14 QMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667777777777777764
No 315
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=20.48 E-value=1.2e+02 Score=16.72 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERI 47 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~ 47 (75)
-|+.||+-..|.+|+-..+-+
T Consensus 12 aaikeeiaaikdkiaaikeyi 32 (36)
T 1bb1_A 12 AAIKEEIAAIKDKIAAIKEYI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777665543
No 316
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=20.47 E-value=29 Score=21.31 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8521 31 EEVEVLKEKIAELMERI 47 (75)
Q Consensus 31 EEVEvLKe~I~eL~er~ 47 (75)
.-|+.||+++.+++++|
T Consensus 44 ~~v~~lk~~l~~~l~~n 60 (71)
T 3dgp_B 44 SKVEFVKHELNRLLSKN 60 (71)
T ss_dssp GGHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34778888888887775
No 317
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.24 E-value=1.5e+02 Score=18.25 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy8521 34 EVLKEKIAELMERIN 48 (75)
Q Consensus 34 EvLKe~I~eL~er~~ 48 (75)
..|+.+|.+|..++.
T Consensus 19 ~~l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 19 SALNTKIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 318
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.19 E-value=1.6e+02 Score=19.32 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8521 27 FAVREEVEVLKEKIAELMERINQLEMEN 54 (75)
Q Consensus 27 ~AVREEVEvLKe~I~eL~er~~~LE~EN 54 (75)
+=+.-||-.||.+|..+-++.+.=.+|.
T Consensus 45 hdl~seV~~LK~dv~~~L~k~~~e~qe~ 72 (101)
T 4aj5_1 45 YDLHSEVQTLKDDINILLDKARLENQEG 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3466799999999999988877655554
Done!