RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8521
(75 letters)
>d2jova1 d.349.1.1 (A:1-77) Hypothetical protein CPE0013
{Clostridium perfringens [TaxId: 1502]}
Length = 77
Score = 26.5 bits (59), Expect = 0.14
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 26 MFAVREEVEVLKEKIAELMERINQLEME 53
+ V+ V K + +++L +
Sbjct: 20 VVPVKSNKPVEISKWIDFSNVLSRLYVG 47
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 24.1 bits (52), Expect = 1.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 37 KEKIAELMERINQLEMENSILKANA 61
E+I QL+ EN++ +A
Sbjct: 58 PSAAVSEAEQIRQLKKENALQRART 82
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 24.8 bits (53), Expect = 1.3
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 30 REEVEVLKEKIAELMERINQLE 51
+E + L ++ E + L
Sbjct: 708 KERYQKLLKQKQEKETELENLL 729
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 24.2 bits (52), Expect = 2.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 30 REEVEVLKEKIAELMERINQLE 51
E E L ++ EL+++I +L
Sbjct: 439 GLEHEKLLDEYKELLDQIAELL 460
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1,
C-terminal dimerization domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 59
Score = 23.2 bits (50), Expect = 2.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 31 EEVEVLKEKIAELMERINQLEME 53
+E L +++ L + LE E
Sbjct: 1 DEAAELMQQVNVLKLTVEDLEKE 23
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.3 bits (50), Expect = 3.0
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 64
+ M E+VE ++ I ++ E + +++ ++S + A+ +
Sbjct: 1 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD 43
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 135
Score = 23.2 bits (50), Expect = 3.4
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 29 VREEVEVLKEKIAELMERINQLEME 53
V ++ L++K+A ++ + Q++ +
Sbjct: 111 VVRGIDTLQKKVASILLALTQMDQD 135
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 23.1 bits (49), Expect = 3.5
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 19 DLVKSHLMFAVREEVEVLKEKIAELMERINQLE 51
D A++ + E+L +K + E I ++
Sbjct: 70 DHPNFDRKAALQSQKEILMKKKQRMDEMIQTID 102
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 22.9 bits (49), Expect = 4.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 30 REEVEVLKEKIAELMERINQLE 51
E ++L+++ +L ++ QL
Sbjct: 65 ISEEDLLRKRREQLKHKLEQLG 86
>d1qk1a2 d.128.1.2 (A:103-379) Creatine kinase, C-terminal domain
{Human (Homo sapiens), mitochondria [TaxId: 9606]}
Length = 277
Score = 22.9 bits (49), Expect = 4.3
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 31 EEVEVLKEKIAELMERINQLEMENSILKANATQET 65
E V+++ + + L++ +LE I T
Sbjct: 241 ELVQLVIDGVNYLIDCERRLERGQDIRIPTPVIHT 275
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 23.2 bits (49), Expect = 4.4
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 53
L+++ + A+RE +E + E + +E+E
Sbjct: 217 LTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 253
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 470
Score = 23.1 bits (48), Expect = 4.8
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 30 REEVEVLKEKIAELMER 46
+ EVEVL +++ ++E
Sbjct: 36 QREVEVLHDRLLAMLEE 52
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 23.0 bits (49), Expect = 4.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 18 SDLVKSHLMFAVREEVEVLKEKIAELMERINQ 49
S++ K HL+ E K A+ R+N+
Sbjct: 27 SEVKKFHLLATFEE----CKALAADTARRMNE 54
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
{Escherichia coli [TaxId: 562]}
Length = 410
Score = 22.9 bits (48), Expect = 5.5
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 25 LMFAVRE-EVEVLKEKIAELMERINQLE 51
L+F V + +V+ + ++I +LME +L+
Sbjct: 366 LVFEVHKDDVDAVAKQIHQLMENCTRLD 393
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 22.7 bits (48), Expect = 5.6
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 3 WVSLSRSDRLADLGLS-------DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 55
L+ + +G + + + + EK+AE+ I +L+
Sbjct: 44 LNELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRD 103
Query: 56 ILKANATQ 63
L A A
Sbjct: 104 QLLALANA 111
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 22.5 bits (48), Expect = 5.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 34 EVLKEKIAELMERINQLE 51
VL+ KI+ M+R ++
Sbjct: 59 CVLRTKISGYMDRAENIK 76
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH
polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 66
Score = 21.9 bits (47), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 19 DLVKSHLMFAVREE-VEVLKEKIAELMERIN 48
D+ +H+ V E V VL+E++ ELM++
Sbjct: 32 DIDDTHVF--VIAELVNVLQERVGELMDQNA 60
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 22.2 bits (47), Expect = 7.1
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 22 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 59
L+ + ++ L++ + + +I+QL+ E LK
Sbjct: 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
coli [TaxId: 562]}
Length = 94
Score = 22.2 bits (47), Expect = 7.6
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 17 LSDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 51
L + +E +++E++ E+ RI +L+
Sbjct: 25 LLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQ 59
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal
domain {Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 22.4 bits (48), Expect = 8.2
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 10 DRLADLGLSDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQL 69
A G S + + +V E + + E++ ME + + QL
Sbjct: 24 SAAARHGFSRIFTC--LLSVNRPKEEIVAEFKEIINHAKDNNME---VILDVAPAVFDQL 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.126 0.334
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 245,669
Number of extensions: 8904
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 33
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)