Query psy8522
Match_columns 78
No_of_seqs 48 out of 50
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 21:06:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4797|consensus 100.0 1E-36 2.3E-41 213.8 7.0 70 7-76 39-109 (123)
2 PF01166 TSC22: TSC-22/dip/bun 100.0 2E-33 4.3E-38 177.4 0.5 57 21-77 1-57 (59)
3 PF06156 DUF972: Protein of un 96.5 0.0059 1.3E-07 41.3 4.4 48 19-67 8-55 (107)
4 PF11365 DUF3166: Protein of u 96.5 0.016 3.5E-07 39.2 6.5 49 24-73 6-55 (96)
5 PRK13169 DNA replication intia 96.4 0.0079 1.7E-07 41.2 4.7 36 31-66 19-54 (110)
6 PF06005 DUF904: Protein of un 96.0 0.058 1.3E-06 34.4 7.0 42 16-62 12-53 (72)
7 PF04977 DivIC: Septum formati 94.9 0.12 2.5E-06 30.6 5.2 41 29-71 19-59 (80)
8 PF10226 DUF2216: Uncharacteri 94.4 0.092 2E-06 39.8 4.8 39 27-65 101-139 (195)
9 PRK13922 rod shape-determining 93.8 0.2 4.4E-06 36.4 5.5 37 29-65 71-110 (276)
10 smart00338 BRLZ basic region l 93.7 0.45 9.8E-06 28.2 6.1 37 28-64 27-63 (65)
11 TIGR02209 ftsL_broad cell divi 93.5 0.39 8.4E-06 29.2 5.6 44 25-71 22-65 (85)
12 TIGR02449 conserved hypothetic 93.4 0.16 3.4E-06 32.4 3.9 30 35-64 1-30 (65)
13 PRK09413 IS2 repressor TnpA; R 93.1 0.23 4.9E-06 32.7 4.5 30 35-64 72-101 (121)
14 PF04508 Pox_A_type_inc: Viral 92.9 0.13 2.7E-06 27.5 2.4 19 34-52 1-19 (23)
15 PRK15422 septal ring assembly 92.4 0.96 2.1E-05 30.2 6.6 42 16-62 12-60 (79)
16 PF07716 bZIP_2: Basic region 92.2 0.6 1.3E-05 27.2 5.0 28 34-61 25-52 (54)
17 TIGR01837 PHA_granule_1 poly(h 92.2 0.23 5E-06 33.5 3.6 31 25-55 87-117 (118)
18 COG3074 Uncharacterized protei 92.0 1 2.2E-05 30.2 6.5 42 16-62 12-60 (79)
19 PF06005 DUF904: Protein of un 91.9 0.52 1.1E-05 30.0 4.8 29 34-62 18-46 (72)
20 cd07429 Cby_like Chibby, a nuc 91.6 0.23 4.9E-06 34.3 3.1 28 34-61 72-99 (108)
21 PF04380 BMFP: Membrane fusoge 91.2 0.29 6.2E-06 31.1 3.1 37 20-56 36-72 (79)
22 COG4467 Regulator of replicati 91.1 0.37 8E-06 34.1 3.8 37 33-69 21-57 (114)
23 TIGR00219 mreC rod shape-deter 90.7 0.81 1.8E-05 34.6 5.6 35 31-65 70-108 (283)
24 COG3937 Uncharacterized conser 90.3 0.67 1.4E-05 32.4 4.5 41 16-56 65-105 (108)
25 PF10805 DUF2730: Protein of u 90.1 0.59 1.3E-05 30.9 3.9 41 29-72 30-70 (106)
26 PF14193 DUF4315: Domain of un 89.9 1.3 2.8E-05 29.1 5.4 42 32-73 6-57 (83)
27 PF03980 Nnf1: Nnf1 ; InterPr 89.2 2.4 5.2E-05 27.3 6.2 41 21-61 67-107 (109)
28 PF11365 DUF3166: Protein of u 89.0 0.46 1E-05 32.2 2.8 30 31-60 66-95 (96)
29 PF15619 Lebercilin: Ciliary p 88.7 1.8 3.9E-05 31.6 5.9 41 26-66 4-44 (194)
30 PRK00888 ftsB cell division pr 88.6 1.6 3.5E-05 29.0 5.2 34 29-62 29-62 (105)
31 TIGR02894 DNA_bind_RsfA transc 88.5 1.3 2.8E-05 32.6 5.1 35 28-62 98-132 (161)
32 PF01486 K-box: K-box region; 87.9 3.2 6.9E-05 26.5 6.0 39 17-62 58-96 (100)
33 PF03148 Tektin: Tektin family 87.7 2.5 5.3E-05 33.1 6.5 43 20-62 310-352 (384)
34 PF10224 DUF2205: Predicted co 87.4 2 4.3E-05 28.2 5.0 34 31-64 27-60 (80)
35 PF01486 K-box: K-box region; 87.4 1.4 3E-05 28.1 4.2 29 25-56 69-97 (100)
36 smart00338 BRLZ basic region l 87.3 1.3 2.7E-05 26.3 3.7 24 40-63 25-48 (65)
37 PF07716 bZIP_2: Basic region 87.3 1.4 3E-05 25.7 3.8 28 36-63 20-47 (54)
38 PF07407 Seadorna_VP6: Seadorn 86.6 1.4 3E-05 36.7 4.7 37 28-66 33-69 (420)
39 PF04977 DivIC: Septum formati 86.3 2.4 5.3E-05 24.8 4.5 25 37-61 20-44 (80)
40 PF14645 Chibby: Chibby family 85.3 1.2 2.6E-05 30.4 3.3 32 32-63 69-100 (116)
41 PF07558 Shugoshin_N: Shugoshi 85.0 0.66 1.4E-05 27.2 1.6 28 37-64 17-44 (46)
42 PF08614 ATG16: Autophagy prot 84.6 4.7 0.0001 28.5 6.1 37 24-60 141-177 (194)
43 PF00170 bZIP_1: bZIP transcri 84.4 6.4 0.00014 23.2 6.3 21 41-61 26-46 (64)
44 PRK00888 ftsB cell division pr 84.2 2.8 6E-05 27.9 4.5 29 35-63 28-56 (105)
45 PF07106 TBPIP: Tat binding pr 84.0 5.3 0.00011 27.4 6.0 40 31-70 76-115 (169)
46 COG1792 MreC Cell shape-determ 83.9 2.8 6.1E-05 31.9 5.0 35 32-66 71-108 (284)
47 cd04779 HTH_MerR-like_sg4 Heli 83.4 5.2 0.00011 27.5 5.7 44 30-73 77-128 (134)
48 PF09738 DUF2051: Double stran 83.4 2.6 5.7E-05 33.0 4.8 38 16-57 92-135 (302)
49 PRK14872 rod shape-determining 83.4 3.2 6.9E-05 33.2 5.3 37 29-65 59-98 (337)
50 PF14645 Chibby: Chibby family 83.2 2.9 6.2E-05 28.6 4.4 20 42-61 72-91 (116)
51 PF04380 BMFP: Membrane fusoge 81.8 5 0.00011 25.4 4.8 38 18-55 41-78 (79)
52 PF13600 DUF4140: N-terminal d 81.2 5 0.00011 25.3 4.7 30 33-62 69-98 (104)
53 KOG3634|consensus 79.8 3.1 6.6E-05 34.2 4.1 34 24-57 212-253 (361)
54 TIGR02894 DNA_bind_RsfA transc 79.6 5.8 0.00012 29.3 5.2 33 30-62 107-139 (161)
55 PF04999 FtsL: Cell division p 79.6 10 0.00022 23.7 5.6 35 29-63 37-71 (97)
56 PF00038 Filament: Intermediat 79.5 5.5 0.00012 29.0 5.0 30 33-62 3-32 (312)
57 PF02183 HALZ: Homeobox associ 78.8 5.9 0.00013 23.2 4.1 29 35-63 6-34 (45)
58 PF06698 DUF1192: Protein of u 78.6 3.9 8.4E-05 25.6 3.5 22 36-57 23-44 (59)
59 PF07106 TBPIP: Tat binding pr 78.5 5.3 0.00011 27.4 4.5 26 35-60 73-98 (169)
60 PRK15422 septal ring assembly 78.3 5.8 0.00013 26.5 4.4 29 34-62 18-46 (79)
61 PF05597 Phasin: Poly(hydroxya 77.4 3.9 8.6E-05 28.6 3.6 40 16-55 87-130 (132)
62 PF10211 Ax_dynein_light: Axon 76.7 20 0.00043 25.8 7.1 44 21-64 101-150 (189)
63 PF05769 DUF837: Protein of un 76.2 4 8.6E-05 29.6 3.5 21 44-64 156-176 (181)
64 PF02403 Seryl_tRNA_N: Seryl-t 76.0 12 0.00026 23.7 5.3 28 32-59 72-99 (108)
65 cd07429 Cby_like Chibby, a nuc 75.7 7.1 0.00015 27.0 4.5 20 43-62 74-93 (108)
66 PF05812 Herpes_BLRF2: Herpesv 75.4 4.5 9.7E-05 28.5 3.5 22 42-63 4-25 (118)
67 TIGR02209 ftsL_broad cell divi 75.2 15 0.00033 22.1 5.4 31 32-62 22-52 (85)
68 PF04999 FtsL: Cell division p 75.0 16 0.00034 22.9 5.6 41 32-72 33-77 (97)
69 PF10224 DUF2205: Predicted co 74.7 12 0.00027 24.4 5.2 31 32-62 21-51 (80)
70 KOG4005|consensus 74.5 5.8 0.00012 31.9 4.3 26 37-62 93-118 (292)
71 PF10779 XhlA: Haemolysin XhlA 74.3 11 0.00025 23.0 4.7 33 30-62 2-34 (71)
72 PRK10884 SH3 domain-containing 73.8 9.6 0.00021 28.1 5.0 25 36-60 127-151 (206)
73 KOG3119|consensus 73.5 11 0.00023 28.6 5.3 45 20-64 194-238 (269)
74 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.4 8.9 0.00019 25.7 4.4 26 36-61 100-125 (132)
75 COG3352 FlaC Putative archaeal 73.3 30 0.00065 25.7 7.5 37 31-67 76-112 (157)
76 KOG4343|consensus 73.0 6.4 0.00014 34.6 4.4 30 33-62 301-330 (655)
77 PF14197 Cep57_CLD_2: Centroso 72.1 15 0.00033 23.1 5.0 28 35-62 34-61 (69)
78 PRK13182 racA polar chromosome 71.6 6.6 0.00014 28.4 3.7 25 31-55 122-146 (175)
79 cd00890 Prefoldin Prefoldin is 71.5 23 0.00049 22.4 6.4 38 17-55 85-122 (129)
80 PF12017 Tnp_P_element: Transp 70.9 18 0.00039 27.4 6.0 41 34-74 18-65 (236)
81 COG4026 Uncharacterized protei 70.9 10 0.00022 30.4 4.8 31 31-61 153-183 (290)
82 PRK14151 heat shock protein Gr 70.7 4.3 9.2E-05 29.4 2.5 35 33-67 26-60 (176)
83 PRK14127 cell division protein 70.5 15 0.00032 25.2 5.0 44 11-55 20-65 (109)
84 PF06305 DUF1049: Protein of u 70.4 6.2 0.00014 22.9 2.8 22 39-60 46-67 (68)
85 PF09744 Jnk-SapK_ap_N: JNK_SA 70.1 8 0.00017 27.7 3.8 28 37-64 85-112 (158)
86 PTZ00454 26S protease regulato 70.0 16 0.00034 29.0 5.7 29 33-61 28-56 (398)
87 PRK13729 conjugal transfer pil 69.5 9.8 0.00021 32.1 4.7 32 33-64 89-120 (475)
88 PRK13923 putative spore coat p 69.0 10 0.00022 28.0 4.2 23 39-61 109-131 (170)
89 PHA03162 hypothetical protein; 68.8 6.6 0.00014 28.5 3.1 22 43-64 15-36 (135)
90 PF14662 CCDC155: Coiled-coil 68.6 14 0.0003 28.0 4.9 30 29-58 62-91 (193)
91 PF05644 Miff: Mitochondrial a 68.5 7.8 0.00017 29.7 3.7 24 35-58 196-219 (246)
92 TIGR01834 PHA_synth_III_E poly 68.5 8.7 0.00019 30.7 4.0 41 20-60 275-315 (320)
93 PF13591 MerR_2: MerR HTH fami 68.2 7 0.00015 24.5 2.9 41 22-62 41-84 (84)
94 PF15456 Uds1: Up-regulated Du 67.4 9.8 0.00021 26.3 3.7 23 33-55 21-43 (124)
95 PF00038 Filament: Intermediat 67.3 46 0.00099 24.2 8.0 40 23-63 206-245 (312)
96 PF15188 CCDC-167: Coiled-coil 67.2 7.9 0.00017 25.8 3.1 25 34-58 43-67 (85)
97 PF11577 NEMO: NF-kappa-B esse 67.1 9.6 0.00021 24.3 3.3 26 32-57 43-68 (68)
98 PRK14157 heat shock protein Gr 67.0 14 0.0003 28.3 4.7 38 31-68 81-118 (227)
99 PF13851 GAS: Growth-arrest sp 66.9 24 0.00052 25.6 5.7 41 18-63 23-63 (201)
100 PF14775 NYD-SP28_assoc: Sperm 66.9 15 0.00032 22.6 4.0 36 28-64 21-56 (60)
101 COG3937 Uncharacterized conser 66.9 9.4 0.0002 26.8 3.5 31 20-50 76-106 (108)
102 PHA03155 hypothetical protein; 66.8 7.9 0.00017 27.4 3.1 22 43-64 10-31 (115)
103 PF04728 LPP: Lipoprotein leuc 66.8 19 0.0004 22.5 4.5 28 35-62 4-31 (56)
104 KOG4593|consensus 66.1 30 0.00065 30.8 7.1 48 14-62 477-524 (716)
105 PF06156 DUF972: Protein of un 65.9 17 0.00038 24.5 4.6 28 35-62 16-43 (107)
106 TIGR03752 conj_TIGR03752 integ 65.8 12 0.00026 31.6 4.5 29 34-62 66-94 (472)
107 PRK14143 heat shock protein Gr 65.6 17 0.00036 27.7 4.9 38 31-68 71-108 (238)
108 PF13974 YebO: YebO-like prote 65.4 12 0.00026 24.8 3.6 30 39-68 25-54 (80)
109 KOG0977|consensus 65.3 12 0.00026 32.0 4.5 30 33-62 41-70 (546)
110 PF09006 Surfac_D-trimer: Lung 65.3 21 0.00045 21.8 4.4 25 36-60 1-25 (46)
111 cd04772 HTH_TioE_rpt1 First He 64.7 26 0.00056 22.4 5.0 23 34-56 76-98 (99)
112 PF12808 Mto2_bdg: Micro-tubul 64.6 7.9 0.00017 23.8 2.5 25 44-68 25-49 (52)
113 PF11464 Rbsn: Rabenosyn Rab b 64.5 27 0.00059 20.7 5.8 19 34-52 22-40 (42)
114 PF07047 OPA3: Optic atrophy 3 63.8 13 0.00027 25.4 3.6 22 38-59 109-130 (134)
115 PF00206 Lyase_1: Lyase; Inte 63.4 30 0.00065 25.9 5.8 37 21-57 112-149 (312)
116 TIGR02338 gimC_beta prefoldin, 63.4 27 0.00058 22.7 5.0 44 11-55 55-102 (110)
117 PF09311 Rab5-bind: Rabaptin-l 63.3 5.5 0.00012 28.2 1.9 38 27-64 8-45 (181)
118 KOG4571|consensus 62.9 16 0.00035 29.3 4.5 36 30-65 251-286 (294)
119 PF07412 Geminin: Geminin; In 62.9 11 0.00024 28.5 3.5 36 30-65 121-156 (200)
120 PRK14151 heat shock protein Gr 62.8 21 0.00046 25.8 4.8 49 18-68 4-52 (176)
121 TIGR02338 gimC_beta prefoldin, 62.7 40 0.00086 21.9 6.3 29 34-62 67-95 (110)
122 PRK14161 heat shock protein Gr 62.4 19 0.00042 26.1 4.5 36 33-68 25-60 (178)
123 PRK14139 heat shock protein Gr 62.1 22 0.00048 26.1 4.9 36 32-67 37-72 (185)
124 PRK01203 prefoldin subunit alp 62.1 40 0.00087 23.8 6.0 40 32-73 5-44 (130)
125 cd00632 Prefoldin_beta Prefold 62.0 39 0.00085 21.6 6.6 43 11-54 51-97 (105)
126 PF08172 CASP_C: CASP C termin 62.0 16 0.00034 27.7 4.2 26 37-62 89-114 (248)
127 PF05557 MAD: Mitotic checkpoi 61.9 17 0.00037 30.3 4.7 44 20-63 483-532 (722)
128 PRK10884 SH3 domain-containing 61.1 25 0.00054 26.0 5.0 31 32-62 137-167 (206)
129 PF08182 Pedibin: Pedibin/Hym- 60.6 27 0.00059 20.4 4.1 32 32-63 2-33 (35)
130 PF04012 PspA_IM30: PspA/IM30 60.6 28 0.00061 24.4 5.0 33 32-64 110-142 (221)
131 PRK14153 heat shock protein Gr 60.1 30 0.00065 25.7 5.3 50 18-67 24-73 (194)
132 PRK10265 chaperone-modulator p 60.1 14 0.0003 24.0 3.2 20 43-62 73-92 (101)
133 KOG3819|consensus 59.9 15 0.00032 31.6 4.0 40 26-65 131-170 (513)
134 PF05103 DivIVA: DivIVA protei 59.5 5.9 0.00013 25.3 1.3 28 33-60 38-65 (131)
135 PRK14158 heat shock protein Gr 59.4 26 0.00057 25.9 4.9 37 31-67 44-80 (194)
136 PF04340 DUF484: Protein of un 59.0 13 0.00027 26.6 3.1 19 31-49 51-69 (225)
137 COG5509 Uncharacterized small 59.0 17 0.00037 23.7 3.4 22 36-57 27-48 (65)
138 PRK14162 heat shock protein Gr 58.6 28 0.0006 25.8 4.9 37 32-68 44-80 (194)
139 PRK14148 heat shock protein Gr 58.4 19 0.0004 26.7 3.9 38 30-67 43-80 (195)
140 TIGR02231 conserved hypothetic 58.2 15 0.00032 29.3 3.6 30 30-59 67-96 (525)
141 PF09712 PHA_synth_III_E: Poly 58.2 10 0.00022 29.1 2.7 35 20-54 258-292 (293)
142 PRK13169 DNA replication intia 58.1 25 0.00053 24.1 4.3 28 35-62 16-43 (110)
143 PRK10963 hypothetical protein; 57.9 17 0.00037 26.4 3.6 18 36-53 46-63 (223)
144 PF11853 DUF3373: Protein of u 57.6 16 0.00034 30.9 3.8 41 23-64 14-54 (489)
145 PF12097 DUF3573: Protein of u 57.6 15 0.00032 30.6 3.6 27 31-57 39-65 (383)
146 PF12709 Kinetocho_Slk19: Cent 57.3 28 0.00061 23.4 4.4 52 16-67 12-75 (87)
147 PF02996 Prefoldin: Prefoldin 57.3 46 0.001 20.9 6.1 39 17-56 75-113 (120)
148 PF10473 CENP-F_leu_zip: Leuci 56.9 32 0.00068 24.4 4.8 45 17-61 29-79 (140)
149 KOG0982|consensus 56.9 22 0.00047 30.5 4.6 33 34-66 285-322 (502)
150 COG3553 Uncharacterized protei 56.9 10 0.00022 26.2 2.3 17 21-37 72-89 (96)
151 COG2919 Septum formation initi 56.9 24 0.00051 23.6 4.0 29 35-63 58-86 (117)
152 PF03980 Nnf1: Nnf1 ; InterPr 56.7 30 0.00065 22.2 4.3 28 36-63 75-102 (109)
153 PRK14148 heat shock protein Gr 56.6 31 0.00067 25.5 4.9 36 31-68 37-72 (195)
154 PF04111 APG6: Autophagy prote 56.4 35 0.00077 26.3 5.3 33 30-62 46-78 (314)
155 PRK14127 cell division protein 56.3 27 0.00059 23.9 4.2 31 32-62 35-65 (109)
156 KOG0977|consensus 56.0 5.1 0.00011 34.2 0.7 33 32-64 294-326 (546)
157 PF15058 Speriolin_N: Sperioli 55.7 21 0.00045 27.4 3.9 28 37-64 8-41 (200)
158 PF12711 Kinesin-relat_1: Kine 55.5 40 0.00086 22.5 4.8 34 31-64 28-67 (86)
159 PRK14155 heat shock protein Gr 55.5 30 0.00065 25.8 4.7 36 33-68 19-54 (208)
160 PRK14140 heat shock protein Gr 55.3 21 0.00046 26.3 3.8 30 34-63 44-73 (191)
161 PF08946 Osmo_CC: Osmosensory 54.7 21 0.00045 21.9 3.1 35 19-54 5-39 (46)
162 PF14915 CCDC144C: CCDC144C pr 54.3 13 0.00027 30.0 2.7 21 44-64 217-237 (305)
163 COG2960 Uncharacterized protei 53.9 62 0.0013 22.6 5.7 42 17-58 42-90 (103)
164 PRK14139 heat shock protein Gr 53.6 23 0.00049 26.1 3.7 34 32-67 30-63 (185)
165 PF13600 DUF4140: N-terminal d 53.4 48 0.001 20.8 4.8 33 28-60 71-103 (104)
166 TIGR02231 conserved hypothetic 53.4 39 0.00084 27.0 5.3 36 29-64 73-108 (525)
167 PF04849 HAP1_N: HAP1 N-termin 53.4 25 0.00055 28.0 4.2 26 36-61 162-187 (306)
168 PF11559 ADIP: Afadin- and alp 53.0 58 0.0013 21.8 5.4 33 30-62 62-94 (151)
169 TIGR00414 serS seryl-tRNA synt 52.9 43 0.00094 26.6 5.4 29 31-59 73-101 (418)
170 PRK14147 heat shock protein Gr 52.7 33 0.00072 24.6 4.4 34 34-67 25-58 (172)
171 PF13870 DUF4201: Domain of un 52.3 50 0.0011 22.7 5.1 22 33-54 151-172 (177)
172 PRK15396 murein lipoprotein; P 51.9 43 0.00094 21.8 4.5 30 34-63 25-54 (78)
173 PF10398 DUF2443: Protein of u 51.9 18 0.00039 24.3 2.7 38 9-47 28-70 (79)
174 COG2433 Uncharacterized conser 51.8 21 0.00044 31.5 3.7 32 31-62 426-457 (652)
175 PRK14154 heat shock protein Gr 51.5 41 0.00088 25.3 4.8 35 33-67 58-92 (208)
176 KOG3759|consensus 51.2 19 0.00041 31.5 3.4 23 36-58 229-251 (621)
177 PRK14158 heat shock protein Gr 51.2 28 0.00061 25.7 3.9 32 34-67 40-71 (194)
178 KOG2685|consensus 51.2 63 0.0014 27.2 6.3 40 21-60 338-377 (421)
179 cd00592 HTH_MerR-like Helix-Tu 51.1 49 0.0011 20.3 4.5 23 32-54 75-97 (100)
180 PF15369 KIAA1328: Uncharacter 50.9 31 0.00067 28.1 4.4 37 22-60 12-52 (328)
181 PF12548 DUF3740: Sulfatase pr 50.8 49 0.0011 23.6 5.0 38 16-54 96-133 (145)
182 PF10018 Med4: Vitamin-D-recep 50.4 88 0.0019 22.1 7.4 42 16-57 13-59 (188)
183 PRK05771 V-type ATP synthase s 50.4 38 0.00082 27.9 4.9 28 34-61 100-127 (646)
184 COG4839 FtsL Protein required 50.3 34 0.00073 24.4 4.0 39 28-69 61-99 (120)
185 PF11382 DUF3186: Protein of u 50.1 36 0.00077 26.1 4.4 32 31-62 36-67 (308)
186 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.0 32 0.0007 23.0 3.8 21 33-53 104-124 (132)
187 cd02656 MIT MIT: domain contai 49.8 32 0.0007 20.5 3.4 38 18-55 23-68 (75)
188 PF10458 Val_tRNA-synt_C: Valy 49.7 23 0.00049 21.3 2.7 38 33-70 3-42 (66)
189 PF10186 Atg14: UV radiation r 49.1 61 0.0013 22.8 5.2 29 33-61 76-104 (302)
190 COG2919 Septum formation initi 49.1 64 0.0014 21.5 5.1 30 35-64 51-80 (117)
191 PRK14159 heat shock protein Gr 48.8 41 0.00088 24.5 4.4 36 33-68 29-64 (176)
192 PLN02678 seryl-tRNA synthetase 48.4 54 0.0012 26.9 5.5 28 32-59 76-103 (448)
193 PRK14164 heat shock protein Gr 48.3 36 0.00078 25.7 4.2 34 34-67 77-110 (218)
194 PRK05431 seryl-tRNA synthetase 48.3 56 0.0012 26.1 5.4 28 32-59 71-98 (425)
195 PF13863 DUF4200: Domain of un 47.9 69 0.0015 20.4 4.9 36 31-66 85-120 (126)
196 PRK14163 heat shock protein Gr 47.8 50 0.0011 25.0 4.9 36 32-67 45-80 (214)
197 PF10226 DUF2216: Uncharacteri 47.4 1E+02 0.0023 23.5 6.5 39 26-64 40-78 (195)
198 PRK14145 heat shock protein Gr 46.9 55 0.0012 24.4 4.9 37 31-67 49-85 (196)
199 PRK14160 heat shock protein Gr 46.9 54 0.0012 24.7 4.9 38 31-68 65-102 (211)
200 PF12718 Tropomyosin_1: Tropom 46.8 55 0.0012 22.6 4.6 25 36-60 16-40 (143)
201 COG1579 Zn-ribbon protein, pos 46.8 73 0.0016 24.5 5.7 41 17-57 78-119 (239)
202 KOG2010|consensus 46.6 23 0.0005 29.6 3.1 39 16-58 127-171 (405)
203 PF05546 She9_MDM33: She9 / Md 46.6 93 0.002 23.8 6.1 43 17-59 7-57 (207)
204 cd04769 HTH_MerR2 Helix-Turn-H 46.5 77 0.0017 20.4 5.0 29 32-60 84-112 (116)
205 COG3165 Uncharacterized protei 46.4 41 0.00089 25.7 4.2 34 23-56 168-201 (204)
206 TIGR02426 protocat_pcaB 3-carb 46.4 71 0.0015 24.5 5.6 38 21-58 100-137 (338)
207 PF03310 Cauli_DNA-bind: Cauli 46.4 74 0.0016 22.6 5.3 34 31-64 10-43 (121)
208 PF01920 Prefoldin_2: Prefoldi 46.4 66 0.0014 19.5 4.6 39 18-57 61-99 (106)
209 PF07061 Swi5: Swi5; InterPro 46.3 72 0.0016 20.6 4.9 26 38-63 4-29 (83)
210 PF05529 Bap31: B-cell recepto 46.3 98 0.0021 21.5 6.5 33 32-64 152-184 (192)
211 PF04799 Fzo_mitofusin: fzo-li 46.2 1.2E+02 0.0026 22.5 6.5 43 17-59 103-145 (171)
212 PRK15366 type III secretion sy 46.2 54 0.0012 22.1 4.3 45 26-73 5-49 (80)
213 PRK14144 heat shock protein Gr 46.1 57 0.0012 24.4 4.9 37 31-67 49-85 (199)
214 COG1842 PspA Phage shock prote 46.0 60 0.0013 24.4 5.0 36 31-66 110-145 (225)
215 PF14723 SSFA2_C: Sperm-specif 46.0 43 0.00093 25.3 4.2 33 23-55 134-166 (179)
216 PRK06390 adenylosuccinate lyas 45.6 71 0.0015 25.5 5.6 38 21-58 103-140 (451)
217 KOG4005|consensus 45.6 1.1E+02 0.0024 24.7 6.7 34 30-63 79-112 (292)
218 PF04859 DUF641: Plant protein 45.4 29 0.00063 24.5 3.1 21 34-54 108-128 (131)
219 PRK14154 heat shock protein Gr 45.3 31 0.00067 26.0 3.4 31 35-67 53-83 (208)
220 PF10205 KLRAQ: Predicted coil 45.3 70 0.0015 22.0 4.9 24 37-60 29-52 (102)
221 PRK13923 putative spore coat p 45.1 60 0.0013 24.0 4.8 30 32-61 109-138 (170)
222 PF13815 Dzip-like_N: Iguana/D 44.9 54 0.0012 21.6 4.2 29 33-61 86-114 (118)
223 COG2433 Uncharacterized conser 44.7 60 0.0013 28.8 5.4 28 36-63 417-444 (652)
224 PRK13922 rod shape-determining 44.5 86 0.0019 22.8 5.5 26 36-61 71-96 (276)
225 PRK14140 heat shock protein Gr 44.4 63 0.0014 23.9 4.9 35 31-67 34-68 (191)
226 PF05384 DegS: Sensor protein 44.3 77 0.0017 22.8 5.2 32 32-63 32-63 (159)
227 PF12718 Tropomyosin_1: Tropom 44.3 48 0.001 22.9 4.0 21 35-55 8-28 (143)
228 TIGR02051 MerR Hg(II)-responsi 44.3 80 0.0017 20.7 4.9 29 35-63 77-105 (124)
229 PF08614 ATG16: Autophagy prot 44.0 82 0.0018 22.2 5.2 28 33-60 122-149 (194)
230 PF14282 FlxA: FlxA-like prote 43.7 41 0.00088 22.1 3.4 15 38-52 23-37 (106)
231 KOG3335|consensus 43.6 78 0.0017 24.0 5.3 32 35-66 107-139 (181)
232 cd04766 HTH_HspR Helix-Turn-He 43.4 78 0.0017 19.5 5.3 17 46-62 70-86 (91)
233 PHA02592 52 DNA topisomerase I 43.2 83 0.0018 25.9 5.8 37 19-55 387-423 (439)
234 PRK05975 3-carboxy-cis,cis-muc 42.8 87 0.0019 24.4 5.6 38 21-58 109-146 (351)
235 PF05190 MutS_IV: MutS family 42.5 65 0.0014 18.8 3.9 23 34-56 4-26 (92)
236 PRK14156 heat shock protein Gr 42.4 55 0.0012 23.9 4.2 37 31-67 31-67 (177)
237 cd01595 Adenylsuccinate_lyase_ 42.3 95 0.0021 24.0 5.7 37 21-57 90-126 (381)
238 PF10883 DUF2681: Protein of u 42.3 45 0.00097 22.2 3.5 22 37-58 26-47 (87)
239 PLN02320 seryl-tRNA synthetase 42.2 73 0.0016 26.8 5.4 30 31-60 134-163 (502)
240 KOG4603|consensus 42.1 59 0.0013 25.0 4.5 26 34-59 79-104 (201)
241 cd02683 MIT_1 MIT: domain cont 41.9 56 0.0012 20.4 3.7 29 27-55 35-68 (77)
242 PF15397 DUF4618: Domain of un 41.9 76 0.0016 24.8 5.1 35 30-64 189-223 (258)
243 PF09789 DUF2353: Uncharacteri 41.7 44 0.00095 26.7 3.9 36 32-67 77-112 (319)
244 PF08898 DUF1843: Domain of un 41.6 24 0.00051 22.1 1.9 19 31-49 35-53 (53)
245 PRK14161 heat shock protein Gr 41.6 41 0.0009 24.4 3.5 33 33-67 18-50 (178)
246 PF09278 MerR-DNA-bind: MerR, 41.5 67 0.0015 18.2 4.3 28 33-60 35-62 (65)
247 PF13815 Dzip-like_N: Iguana/D 41.3 1E+02 0.0022 20.3 5.2 27 34-60 80-106 (118)
248 PF14077 WD40_alt: Alternative 41.1 25 0.00054 21.8 2.0 27 36-62 13-39 (48)
249 PF09744 Jnk-SapK_ap_N: JNK_SA 41.1 80 0.0017 22.6 4.9 31 31-61 86-116 (158)
250 PHA01750 hypothetical protein 41.0 1.1E+02 0.0023 20.4 7.2 42 16-61 27-69 (75)
251 PF07047 OPA3: Optic atrophy 3 40.9 57 0.0012 22.2 3.9 24 31-54 109-132 (134)
252 PF02996 Prefoldin: Prefoldin 39.7 95 0.0021 19.5 5.2 31 33-63 76-106 (120)
253 PF07200 Mod_r: Modifier of ru 39.7 91 0.002 20.7 4.7 28 33-60 54-81 (150)
254 cd00187 TOP4c DNA Topoisomeras 39.7 1E+02 0.0023 25.2 5.8 37 19-55 390-426 (445)
255 PRK14160 heat shock protein Gr 39.3 65 0.0014 24.2 4.3 34 32-67 59-92 (211)
256 COG3880 Modulator of heat shoc 39.3 1.2E+02 0.0025 23.0 5.6 12 2-13 115-126 (176)
257 PRK09053 3-carboxy-cis,cis-muc 39.2 98 0.0021 24.7 5.5 37 21-57 109-145 (452)
258 smart00434 TOP4c DNA Topoisome 39.1 1.1E+02 0.0023 25.0 5.8 38 18-55 399-436 (445)
259 TIGR01242 26Sp45 26S proteasom 39.0 82 0.0018 23.7 4.9 30 33-62 5-34 (364)
260 PRK07492 adenylosuccinate lyas 39.0 94 0.002 25.0 5.4 37 21-57 98-134 (435)
261 PRK14149 heat shock protein Gr 38.9 70 0.0015 23.7 4.4 34 34-67 43-76 (191)
262 PF07334 IFP_35_N: Interferon- 38.8 75 0.0016 20.9 4.1 32 30-61 3-34 (76)
263 PF07586 HXXSHH: Protein of un 38.7 1E+02 0.0022 22.9 5.3 51 6-58 158-208 (302)
264 KOG2391|consensus 38.6 1.3E+02 0.0029 25.0 6.3 45 20-64 211-269 (365)
265 PRK11239 hypothetical protein; 38.5 64 0.0014 24.9 4.2 12 36-47 192-203 (215)
266 TIGR01063 gyrA DNA gyrase, A s 38.4 1.1E+02 0.0024 26.7 6.1 37 19-55 412-448 (800)
267 COG3416 Uncharacterized protei 38.2 35 0.00076 26.8 2.8 22 35-56 56-77 (233)
268 cd01597 pCLME prokaryotic 3-ca 37.9 1.2E+02 0.0026 23.9 5.8 37 21-57 100-136 (437)
269 PF05911 DUF869: Plant protein 37.7 1E+02 0.0022 27.3 5.8 39 24-62 117-155 (769)
270 cd01359 Argininosuccinate_lyas 37.7 1.1E+02 0.0024 24.0 5.6 37 21-57 88-124 (435)
271 PRK14145 heat shock protein Gr 37.6 62 0.0013 24.1 4.0 32 34-67 45-76 (196)
272 PRK09039 hypothetical protein; 37.6 95 0.0021 24.2 5.1 22 33-54 143-164 (343)
273 PRK05771 V-type ATP synthase s 37.6 86 0.0019 25.9 5.1 34 31-64 90-123 (646)
274 cd04789 HTH_Cfa Helix-Turn-Hel 37.5 86 0.0019 20.0 4.2 28 36-63 73-100 (102)
275 PF07820 TraC: TraC-like prote 37.5 58 0.0013 22.2 3.5 19 31-49 6-24 (92)
276 PF04849 HAP1_N: HAP1 N-termin 37.4 75 0.0016 25.4 4.6 34 31-64 231-264 (306)
277 PRK05561 DNA topoisomerase IV 37.4 1.2E+02 0.0026 26.4 6.1 38 18-55 421-458 (742)
278 PRK14141 heat shock protein Gr 37.2 85 0.0018 23.5 4.6 36 32-67 36-71 (209)
279 PF01025 GrpE: GrpE; InterPro 37.0 42 0.0009 22.4 2.7 31 34-64 18-48 (165)
280 PRK09413 IS2 repressor TnpA; R 36.9 98 0.0021 20.2 4.4 31 32-62 76-106 (121)
281 PRK09343 prefoldin subunit bet 36.9 1.3E+02 0.0028 20.1 5.6 40 11-54 59-98 (121)
282 PF10066 DUF2304: Uncharacteri 36.6 1.1E+02 0.0025 19.9 4.7 25 34-58 86-110 (115)
283 COG4026 Uncharacterized protei 36.4 55 0.0012 26.4 3.7 21 35-55 164-184 (290)
284 PRK10227 DNA-binding transcrip 36.4 93 0.002 21.1 4.4 26 37-62 82-107 (135)
285 cd01334 Lyase_I Lyase class I 36.3 1.2E+02 0.0026 22.7 5.3 36 22-57 82-117 (325)
286 PRK14147 heat shock protein Gr 36.2 47 0.001 23.9 3.1 27 36-64 20-46 (172)
287 PRK08540 adenylosuccinate lyas 36.1 1.3E+02 0.0027 24.0 5.7 38 21-58 104-141 (449)
288 PF11488 Lge1: Transcriptional 35.9 1.1E+02 0.0024 19.1 5.5 39 32-70 28-66 (80)
289 PF05769 DUF837: Protein of un 35.7 1.2E+02 0.0027 21.9 5.2 37 28-64 42-86 (181)
290 cd04788 HTH_NolA-AlbR Helix-Tu 35.6 63 0.0014 20.3 3.3 21 35-55 74-94 (96)
291 cd01362 Fumarase_classII Class 35.6 1.1E+02 0.0023 24.8 5.3 37 21-57 137-174 (455)
292 COG2960 Uncharacterized protei 35.6 44 0.00096 23.3 2.7 23 29-51 68-90 (103)
293 PF15397 DUF4618: Domain of un 35.6 78 0.0017 24.7 4.3 39 31-69 197-235 (258)
294 cd01360 Adenylsuccinate_lyase_ 35.5 1.3E+02 0.0028 23.5 5.6 38 21-58 92-129 (387)
295 PRK13353 aspartate ammonia-lya 35.4 1.2E+02 0.0025 24.7 5.5 38 21-58 142-179 (473)
296 PRK14143 heat shock protein Gr 35.3 68 0.0015 24.4 3.9 29 35-65 68-96 (238)
297 cd00584 Prefoldin_alpha Prefol 35.2 1.3E+02 0.0027 19.5 5.0 38 17-55 85-122 (129)
298 PF01166 TSC22: TSC-22/dip/bun 35.0 1.1E+02 0.0024 19.5 4.3 23 33-55 20-42 (59)
299 PRK07380 adenylosuccinate lyas 35.0 1.2E+02 0.0026 24.4 5.4 37 21-57 95-131 (431)
300 PF01519 DUF16: Protein of unk 35.0 1.5E+02 0.0033 20.5 5.9 34 15-54 40-73 (102)
301 PRK03918 chromosome segregatio 34.9 1.2E+02 0.0025 25.3 5.4 40 32-71 624-663 (880)
302 PF07989 Microtub_assoc: Micro 34.9 38 0.00083 21.5 2.2 19 43-61 2-20 (75)
303 PRK09973 putative outer membra 34.8 95 0.0021 20.7 4.1 31 34-64 24-54 (85)
304 cd01282 HTH_MerR-like_sg3 Heli 34.7 1.1E+02 0.0025 19.7 4.4 27 36-62 83-109 (112)
305 PRK14146 heat shock protein Gr 34.7 1.1E+02 0.0023 23.0 4.8 35 33-67 60-94 (215)
306 smart00745 MIT Microtubule Int 34.7 99 0.0022 18.2 3.9 31 26-56 36-71 (77)
307 PRK14162 heat shock protein Gr 34.7 70 0.0015 23.7 3.8 29 35-65 40-68 (194)
308 KOG3335|consensus 34.7 50 0.0011 25.0 3.1 34 25-59 105-139 (181)
309 TIGR02047 CadR-PbrR Cd(II)/Pb( 34.6 1.4E+02 0.003 19.8 5.0 27 36-62 81-107 (127)
310 PF09730 BicD: Microtubule-ass 34.5 98 0.0021 27.4 5.2 41 19-63 72-112 (717)
311 cd07613 BAR_Endophilin_A1 The 34.3 56 0.0012 24.7 3.3 32 20-51 143-174 (223)
312 PF08641 Mis14: Kinetochore pr 34.2 78 0.0017 21.5 3.8 47 25-71 20-70 (139)
313 PF14197 Cep57_CLD_2: Centroso 34.2 1.2E+02 0.0026 19.0 5.0 31 32-62 3-33 (69)
314 PF15619 Lebercilin: Ciliary p 34.1 1.1E+02 0.0024 22.3 4.7 29 28-56 62-90 (194)
315 COG3159 Uncharacterized protei 34.0 73 0.0016 24.7 3.9 21 35-55 46-66 (218)
316 PRK10636 putative ABC transpor 34.0 82 0.0018 26.0 4.5 27 30-56 559-585 (638)
317 cd01357 Aspartase Aspartase. T 33.6 1.4E+02 0.003 24.1 5.6 37 21-57 137-173 (450)
318 PF08826 DMPK_coil: DMPK coile 33.5 1.2E+02 0.0026 18.8 7.1 43 19-62 11-53 (61)
319 PF05010 TACC: Transforming ac 33.5 76 0.0016 23.7 3.9 33 33-65 110-142 (207)
320 PF04568 IATP: Mitochondrial A 33.2 99 0.0021 20.9 4.1 22 34-55 72-97 (100)
321 PF07200 Mod_r: Modifier of ru 32.9 1.5E+02 0.0032 19.7 4.8 39 31-69 59-97 (150)
322 cd04773 HTH_TioE_rpt2 Second H 32.9 1.4E+02 0.003 19.2 6.3 24 32-55 83-106 (108)
323 cd04768 HTH_BmrR-like Helix-Tu 32.5 69 0.0015 20.1 3.1 22 34-55 73-94 (96)
324 PF05266 DUF724: Protein of un 32.4 88 0.0019 22.8 4.0 26 36-61 126-151 (190)
325 PRK14153 heat shock protein Gr 32.3 44 0.00096 24.8 2.5 31 35-67 34-64 (194)
326 smart00340 HALZ homeobox assoc 32.3 1.2E+02 0.0026 18.5 4.4 30 36-65 7-36 (44)
327 cd04775 HTH_Cfa-like Helix-Tur 32.3 1.2E+02 0.0026 19.2 4.2 29 35-63 72-100 (102)
328 PF12761 End3: Actin cytoskele 32.2 83 0.0018 23.8 3.9 25 35-59 97-121 (195)
329 TIGR00928 purB adenylosuccinat 32.2 1.5E+02 0.0033 23.3 5.6 38 21-58 98-135 (435)
330 PRK12425 fumarate hydratase; P 32.0 1.5E+02 0.0031 24.2 5.5 38 21-58 139-177 (464)
331 PF09177 Syntaxin-6_N: Syntaxi 32.0 87 0.0019 19.8 3.5 26 32-57 44-69 (97)
332 PF07412 Geminin: Geminin; In 31.3 78 0.0017 24.0 3.7 33 32-64 130-162 (200)
333 PF08776 VASP_tetra: VASP tetr 31.2 1.2E+02 0.0026 18.0 4.9 27 20-46 4-30 (40)
334 KOG2077|consensus 31.1 1.8E+02 0.0039 26.4 6.3 44 18-61 317-370 (832)
335 PRK13752 putative transcriptio 31.0 1.2E+02 0.0025 20.9 4.2 28 36-63 86-113 (144)
336 cd07615 BAR_Endophilin_A3 The 31.0 73 0.0016 24.1 3.5 30 20-49 143-172 (223)
337 cd00890 Prefoldin Prefoldin is 31.0 1.4E+02 0.003 18.7 4.7 48 12-63 75-123 (129)
338 PF14723 SSFA2_C: Sperm-specif 31.0 70 0.0015 24.2 3.3 24 28-54 153-176 (179)
339 PF07426 Dynactin_p22: Dynacti 30.9 57 0.0012 23.5 2.8 18 33-50 4-21 (174)
340 COG0576 GrpE Molecular chapero 30.6 1.2E+02 0.0026 22.1 4.4 39 29-67 38-76 (193)
341 PF07888 CALCOCO1: Calcium bin 30.5 1.3E+02 0.0028 26.0 5.2 34 31-64 203-236 (546)
342 PLN02646 argininosuccinate lya 30.2 1.6E+02 0.0035 24.0 5.5 37 21-57 124-160 (474)
343 PRK04833 argininosuccinate lya 30.0 1.6E+02 0.0035 23.7 5.4 38 21-58 110-147 (455)
344 PF05010 TACC: Transforming ac 29.9 1.8E+02 0.0039 21.7 5.4 33 26-58 8-40 (207)
345 PF01763 Herpes_UL6: Herpesvir 29.9 72 0.0016 27.4 3.6 24 37-60 366-389 (557)
346 PF03962 Mnd1: Mnd1 family; I 29.9 1.6E+02 0.0035 21.2 5.0 31 41-72 110-140 (188)
347 PRK00485 fumC fumarate hydrata 29.8 1.7E+02 0.0037 23.6 5.5 37 21-57 141-178 (464)
348 PF00308 Bac_DnaA: Bacterial d 29.8 43 0.00094 23.8 2.0 15 25-39 47-61 (219)
349 cd01108 HTH_CueR Helix-Turn-He 29.8 1.3E+02 0.0029 19.7 4.2 27 37-63 82-108 (127)
350 TIGR02043 ZntR Zn(II)-responsi 29.7 1E+02 0.0023 20.4 3.7 29 36-64 83-111 (131)
351 cd07596 BAR_SNX The Bin/Amphip 29.7 1.4E+02 0.003 19.8 4.3 24 35-58 146-169 (218)
352 KOG4360|consensus 29.5 59 0.0013 28.6 3.0 31 32-62 157-187 (596)
353 PF14712 Snapin_Pallidin: Snap 29.3 80 0.0017 19.4 2.9 35 20-54 56-91 (92)
354 PF05082 Rop-like: Rop-like; 29.3 1.3E+02 0.0028 19.3 3.9 26 34-59 2-27 (66)
355 PTZ00454 26S protease regulato 29.2 2.1E+02 0.0045 22.8 5.8 49 26-74 14-64 (398)
356 TIGR01061 parC_Gpos DNA topois 29.2 1.8E+02 0.004 25.2 6.0 38 18-55 411-448 (738)
357 PF04212 MIT: MIT (microtubule 29.1 1.2E+02 0.0027 17.6 4.4 38 17-54 21-66 (69)
358 cd00632 Prefoldin_beta Prefold 29.1 1.6E+02 0.0034 18.8 6.4 23 34-56 63-85 (105)
359 PRK14150 heat shock protein Gr 29.1 97 0.0021 22.6 3.7 27 34-65 41-67 (193)
360 PF03449 GreA_GreB_N: Transcri 29.0 1.2E+02 0.0027 19.0 3.8 15 40-54 52-66 (74)
361 PLN00134 fumarate hydratase; P 29.0 1.8E+02 0.0039 23.6 5.6 38 21-58 133-171 (458)
362 PF10112 Halogen_Hydrol: 5-bro 28.9 77 0.0017 22.1 3.1 36 33-68 67-102 (199)
363 PRK00855 argininosuccinate lya 28.8 1.9E+02 0.0041 23.2 5.6 37 21-57 112-148 (459)
364 PRK09514 zntR zinc-responsive 28.8 1.4E+02 0.003 20.2 4.2 28 36-63 83-110 (140)
365 PRK05560 DNA gyrase subunit A; 28.6 1.9E+02 0.0042 25.2 6.0 37 19-55 415-451 (805)
366 PF07111 HCR: Alpha helical co 28.6 1.2E+02 0.0026 27.3 4.9 34 31-64 328-361 (739)
367 PRK09039 hypothetical protein; 28.6 1.4E+02 0.003 23.3 4.7 28 33-60 136-163 (343)
368 PTZ00464 SNF-7-like protein; P 28.6 1.5E+02 0.0032 22.1 4.7 31 34-64 18-48 (211)
369 PF05911 DUF869: Plant protein 28.3 1.1E+02 0.0024 27.2 4.5 28 37-64 179-206 (769)
370 PF12999 PRKCSH-like: Glucosid 28.2 2.5E+02 0.0054 20.8 5.9 21 36-56 155-175 (176)
371 TIGR02977 phageshock_pspA phag 28.2 2E+02 0.0043 20.7 5.2 29 32-60 111-139 (219)
372 PF07888 CALCOCO1: Calcium bin 28.2 1.2E+02 0.0025 26.2 4.5 33 31-63 280-312 (546)
373 cd04784 HTH_CadR-PbrR Helix-Tu 28.1 1.5E+02 0.0033 19.2 4.2 26 37-62 82-107 (127)
374 PF10037 MRP-S27: Mitochondria 28.0 94 0.002 25.6 3.8 41 4-45 248-293 (429)
375 cd01598 PurB PurB_like adenylo 27.9 1.8E+02 0.0039 23.5 5.4 37 21-57 102-139 (425)
376 PF08202 MIS13: Mis12-Mtw1 pro 27.9 85 0.0019 23.9 3.4 27 38-64 161-187 (301)
377 PF11932 DUF3450: Protein of u 27.8 1.4E+02 0.0031 21.6 4.4 24 38-61 53-76 (251)
378 TIGR00293 prefoldin, archaeal 27.8 1.7E+02 0.0037 18.8 6.4 38 17-55 84-121 (126)
379 cd04782 HTH_BltR Helix-Turn-He 27.7 93 0.002 19.6 3.1 20 36-55 76-95 (97)
380 KOG4643|consensus 27.7 1.1E+02 0.0024 29.0 4.5 37 32-68 313-349 (1195)
381 PRK10455 periplasmic protein; 27.7 2E+02 0.0044 20.3 5.1 23 50-73 117-139 (161)
382 cd04776 HTH_GnyR Helix-Turn-He 27.6 1.8E+02 0.004 19.0 5.2 29 32-60 78-106 (118)
383 PF12958 DUF3847: Protein of u 27.6 1.3E+02 0.0028 19.9 3.8 23 33-55 7-29 (86)
384 PF11932 DUF3450: Protein of u 27.3 2.1E+02 0.0045 20.8 5.2 29 34-62 42-70 (251)
385 PF06810 Phage_GP20: Phage min 27.3 1E+02 0.0022 21.7 3.5 16 36-51 53-68 (155)
386 PRK14144 heat shock protein Gr 27.2 1.1E+02 0.0023 23.0 3.7 30 35-66 46-75 (199)
387 PF02994 Transposase_22: L1 tr 27.1 1.5E+02 0.0033 23.3 4.7 29 31-59 141-169 (370)
388 PRK14163 heat shock protein Gr 27.1 1E+02 0.0022 23.3 3.7 26 37-64 43-68 (214)
389 PRK12308 bifunctional arginino 27.0 2E+02 0.0043 23.8 5.6 37 21-57 110-146 (614)
390 PRK13848 conjugal transfer pro 26.9 87 0.0019 21.8 3.0 19 31-49 7-25 (98)
391 COG1938 Archaeal enzymes of AT 26.9 1.1E+02 0.0024 23.7 3.9 22 33-54 210-231 (244)
392 PF10975 DUF2802: Protein of u 26.9 1.3E+02 0.0028 18.8 3.5 23 32-54 3-25 (70)
393 PF10473 CENP-F_leu_zip: Leuci 26.5 2E+02 0.0042 20.4 4.8 34 30-63 76-109 (140)
394 cd01596 Aspartase_like asparta 26.4 2.2E+02 0.0047 23.1 5.6 37 22-58 138-174 (450)
395 PRK12273 aspA aspartate ammoni 26.3 2.2E+02 0.0048 23.1 5.6 37 21-57 144-180 (472)
396 PF04124 Dor1: Dor1-like famil 26.3 1.3E+02 0.0028 22.9 4.1 26 32-57 12-37 (338)
397 PF13879 KIAA1430: KIAA1430 ho 26.0 72 0.0016 19.4 2.3 15 47-61 35-49 (98)
398 PF13166 AAA_13: AAA domain 25.9 3.6E+02 0.0079 21.9 7.5 37 16-52 392-428 (712)
399 PF12240 Angiomotin_C: Angiomo 25.7 1.1E+02 0.0025 23.4 3.7 26 35-60 58-83 (205)
400 PF05075 DUF684: Protein of un 25.7 81 0.0018 24.4 3.0 33 34-66 2-41 (345)
401 KOG0241|consensus 25.7 89 0.0019 30.2 3.7 12 33-44 370-381 (1714)
402 PF10482 CtIP_N: Tumour-suppre 25.5 97 0.0021 22.2 3.1 20 43-62 98-117 (120)
403 PF05529 Bap31: B-cell recepto 25.5 1.8E+02 0.0038 20.2 4.4 21 33-53 160-180 (192)
404 PRK10325 heat shock protein Gr 25.4 81 0.0018 23.1 2.8 8 57-64 60-67 (197)
405 PF03148 Tektin: Tektin family 25.4 1.5E+02 0.0032 23.4 4.4 42 21-62 110-151 (384)
406 PF11382 DUF3186: Protein of u 25.4 1.3E+02 0.0027 23.1 3.9 32 31-65 43-74 (308)
407 PRK10698 phage shock protein P 25.3 2.3E+02 0.005 20.8 5.2 32 31-62 110-141 (222)
408 TIGR03495 phage_LysB phage lys 25.3 1.9E+02 0.0041 20.5 4.6 34 32-65 66-99 (135)
409 PRK02186 argininosuccinate lya 25.2 2.1E+02 0.0046 24.7 5.6 38 21-58 517-554 (887)
410 PF09789 DUF2353: Uncharacteri 25.1 1E+02 0.0022 24.7 3.5 29 36-64 191-219 (319)
411 KOG0930|consensus 25.1 74 0.0016 26.5 2.8 23 33-55 30-52 (395)
412 PF12443 AKNA: AT-hook-contain 25.1 1.2E+02 0.0026 21.1 3.4 24 33-56 51-74 (106)
413 KOG2397|consensus 25.0 1.4E+02 0.0029 25.6 4.4 28 31-58 341-368 (480)
414 PF09440 eIF3_N: eIF3 subunit 24.9 2.3E+02 0.0051 19.6 4.9 39 36-74 64-103 (133)
415 TIGR00839 aspA aspartate ammon 24.9 2.1E+02 0.0046 23.4 5.3 37 21-57 140-176 (468)
416 PF14389 Lzipper-MIP1: Leucine 24.8 1.6E+02 0.0035 18.9 3.8 21 34-54 61-81 (88)
417 KOG0023|consensus 24.7 32 0.0007 28.4 0.7 25 7-31 299-324 (360)
418 TIGR02976 phageshock_pspB phag 24.6 1.6E+02 0.0035 18.9 3.8 20 36-55 44-63 (75)
419 PF10552 ORF6C: ORF6C domain; 24.5 1.3E+02 0.0028 19.7 3.4 21 34-54 8-28 (116)
420 PRK09631 DNA topoisomerase IV 24.5 2.4E+02 0.0051 24.6 5.8 39 18-56 388-426 (635)
421 KOG0483|consensus 24.5 1.3E+02 0.0027 22.5 3.7 32 34-65 112-143 (198)
422 TIGR00838 argH argininosuccina 24.5 2.4E+02 0.0053 22.4 5.5 37 21-57 108-144 (455)
423 PLN02848 adenylosuccinate lyas 24.4 2.4E+02 0.0052 23.0 5.6 38 21-58 127-165 (458)
424 PF10211 Ax_dynein_light: Axon 24.4 2.7E+02 0.0059 20.0 7.5 31 30-60 123-153 (189)
425 PF11853 DUF3373: Protein of u 24.2 51 0.0011 27.9 1.7 27 29-55 33-59 (489)
426 PF10271 Tmp39: Putative trans 24.2 50 0.0011 27.4 1.7 13 30-42 213-225 (423)
427 PRK00783 DNA-directed RNA poly 24.2 1.1E+02 0.0024 22.4 3.4 22 31-52 240-261 (263)
428 PF05308 Mito_fiss_reg: Mitoch 24.2 93 0.002 23.8 3.0 20 46-65 120-139 (253)
429 PRK03992 proteasome-activating 24.2 2.6E+02 0.0055 21.7 5.4 29 33-61 14-42 (389)
430 COG5278 Predicted periplasmic 24.0 3.1E+02 0.0068 20.5 6.5 41 16-57 135-179 (207)
431 TIGR02044 CueR Cu(I)-responsiv 24.0 2.1E+02 0.0047 18.6 4.4 27 37-63 82-108 (127)
432 COG1730 GIM5 Predicted prefold 24.0 1.9E+02 0.0042 20.6 4.4 46 16-62 91-136 (145)
433 TIGR01010 BexC_CtrB_KpsE polys 23.8 97 0.0021 23.3 3.0 28 33-60 176-203 (362)
434 COG1422 Predicted membrane pro 23.8 1.3E+02 0.0029 22.9 3.8 25 33-57 71-95 (201)
435 PF05483 SCP-1: Synaptonemal c 23.8 2.3E+02 0.005 25.8 5.7 41 27-67 587-627 (786)
436 COG0290 InfC Translation initi 23.7 31 0.00066 26.0 0.3 20 5-24 24-43 (176)
437 PF11336 DUF3138: Protein of u 23.6 1.1E+02 0.0024 26.5 3.6 23 34-56 25-47 (514)
438 PF09073 BUD22: BUD22; InterP 23.6 1.8E+02 0.004 23.2 4.7 47 23-70 8-60 (432)
439 PF10393 Matrilin_ccoil: Trime 23.6 1.8E+02 0.0038 17.4 4.1 24 32-55 21-44 (47)
440 cd04785 HTH_CadR-PbrR-like Hel 23.5 2.2E+02 0.0048 18.6 5.0 29 36-64 81-109 (126)
441 PRK08084 DNA replication initi 23.4 65 0.0014 22.9 1.9 13 25-37 58-70 (235)
442 PRK12377 putative replication 23.1 1.6E+02 0.0034 21.9 4.0 43 25-67 114-165 (248)
443 KOG4797|consensus 23.0 1.5E+02 0.0033 21.3 3.7 24 32-55 72-95 (123)
444 PF08172 CASP_C: CASP C termin 22.9 1.8E+02 0.004 22.0 4.4 11 6-16 75-85 (248)
445 PF11803 UXS1_N: UDP-glucurona 22.9 1.1E+02 0.0023 20.6 2.8 18 34-51 57-74 (78)
446 PF10737 GerPC: Spore germinat 22.9 83 0.0018 23.2 2.5 21 43-63 1-21 (176)
447 PF05873 Mt_ATP-synt_D: ATP sy 22.8 1.6E+02 0.0034 20.9 3.8 34 36-69 98-131 (161)
448 PRK03992 proteasome-activating 22.8 2.4E+02 0.0051 21.9 5.0 30 33-62 21-50 (389)
449 cd04770 HTH_HMRTR Helix-Turn-H 22.7 2.2E+02 0.0047 18.2 5.9 27 36-62 81-107 (123)
450 PF05698 Trigger_C: Bacterial 22.6 2.2E+02 0.0047 18.2 4.5 24 36-59 2-25 (162)
451 PF06667 PspB: Phage shock pro 22.6 1.9E+02 0.0041 18.7 3.8 22 34-55 42-63 (75)
452 PF00521 DNA_topoisoIV: DNA gy 22.6 1.5E+02 0.0032 23.6 3.9 23 33-55 390-412 (426)
453 PF10212 TTKRSYEDQ: Predicted 22.5 2.1E+02 0.0046 24.7 5.1 36 24-59 292-327 (518)
454 PF05278 PEARLI-4: Arabidopsis 22.3 2E+02 0.0044 22.7 4.6 29 34-62 221-249 (269)
455 KOG4301|consensus 22.2 1.5E+02 0.0033 25.2 4.1 26 36-61 406-431 (434)
456 PF14584 DUF4446: Protein of u 22.2 1.9E+02 0.0041 20.5 4.1 24 33-56 52-75 (151)
457 PF05130 FlgN: FlgN protein; 22.2 2E+02 0.0043 17.6 4.2 28 33-60 83-110 (143)
458 PRK06705 argininosuccinate lya 22.2 2.9E+02 0.0062 22.8 5.6 37 21-57 117-153 (502)
459 cd04783 HTH_MerR1 Helix-Turn-H 22.2 2.3E+02 0.0049 18.4 4.2 27 36-62 79-105 (126)
460 PF13015 PRKCSH_1: Glucosidase 22.1 1.6E+02 0.0034 20.9 3.6 24 33-56 2-25 (154)
461 PF12761 End3: Actin cytoskele 22.0 2.2E+02 0.0048 21.5 4.6 26 31-56 164-189 (195)
462 PF13758 Prefoldin_3: Prefoldi 22.0 2.7E+02 0.0059 19.0 4.9 32 17-49 66-97 (99)
463 cd04786 HTH_MerR-like_sg7 Heli 21.8 2.4E+02 0.0052 19.0 4.4 28 36-63 80-107 (131)
464 cd06571 Bac_DnaA_C C-terminal 21.8 1.4E+02 0.003 18.6 3.0 17 5-21 57-73 (90)
465 PF09388 SpoOE-like: Spo0E lik 21.8 1.6E+02 0.0035 16.4 3.6 28 39-70 2-29 (45)
466 PRK14979 DNA-directed RNA poly 21.7 1.2E+02 0.0026 22.4 3.1 24 31-54 167-190 (195)
467 PF05700 BCAS2: Breast carcino 21.7 3.2E+02 0.007 19.8 7.0 35 28-62 169-203 (221)
468 KOG4343|consensus 21.7 90 0.0019 27.7 2.8 20 42-61 303-322 (655)
469 cd04777 HTH_MerR-like_sg1 Heli 21.7 1.5E+02 0.0033 18.7 3.2 21 36-56 83-103 (107)
470 PF03962 Mnd1: Mnd1 family; I 21.7 3E+02 0.0065 19.8 5.1 29 32-60 67-95 (188)
471 PF06632 XRCC4: DNA double-str 21.7 2.8E+02 0.0061 22.2 5.3 13 45-57 141-153 (342)
472 PRK06835 DNA replication prote 21.6 1.5E+02 0.0033 22.9 3.8 25 33-57 64-88 (329)
473 TIGR00979 fumC_II fumarate hyd 21.6 2.5E+02 0.0055 22.8 5.2 36 22-57 139-175 (458)
474 smart00224 GGL G protein gamma 21.6 79 0.0017 19.1 1.8 15 31-45 3-17 (63)
475 COG3599 DivIVA Cell division i 21.5 1.9E+02 0.0041 21.7 4.1 41 11-52 20-62 (212)
476 PF04678 DUF607: Protein of un 21.4 2.4E+02 0.0052 19.9 4.5 25 37-61 60-84 (180)
477 TIGR01797 CM_P_1 chorismate mu 21.2 2.2E+02 0.0047 17.6 5.0 32 31-62 3-34 (83)
478 KOG1333|consensus 21.2 1E+02 0.0022 24.4 2.8 27 30-56 186-212 (241)
479 PRK10363 cpxP periplasmic repr 21.1 3E+02 0.0065 20.3 5.0 26 47-73 108-133 (166)
480 PRK10803 tol-pal system protei 21.0 2.5E+02 0.0054 21.0 4.7 25 32-56 66-90 (263)
481 PF05565 Sipho_Gp157: Siphovir 21.0 2.6E+02 0.0056 19.4 4.5 34 33-66 53-86 (162)
482 cd01109 HTH_YyaN Helix-Turn-He 20.9 2.4E+02 0.0051 17.9 4.9 28 34-61 79-106 (113)
483 cd01106 HTH_TipAL-Mta Helix-Tu 20.9 2.3E+02 0.0049 17.7 5.5 29 33-61 72-100 (103)
484 PRK09467 envZ osmolarity senso 20.8 2.7E+02 0.0059 20.2 4.7 32 33-64 205-236 (435)
485 KOG3584|consensus 20.8 1.4E+02 0.0031 24.7 3.6 36 23-60 296-331 (348)
486 PF10607 CLTH: CTLH/CRA C-term 20.7 2.4E+02 0.0053 18.0 5.0 18 16-33 55-72 (145)
487 PF08644 SPT16: FACT complex s 20.7 1.8E+02 0.0038 20.9 3.7 39 36-74 80-118 (152)
488 PF03961 DUF342: Protein of un 20.6 2.5E+02 0.0055 22.1 4.9 31 32-62 332-362 (451)
489 KOG2991|consensus 20.6 1.6E+02 0.0035 24.2 3.8 41 29-69 266-313 (330)
490 cd04790 HTH_Cfa-like_unk Helix 20.4 2.3E+02 0.005 19.8 4.2 28 36-63 76-103 (172)
491 PF07889 DUF1664: Protein of u 20.4 2.2E+02 0.0047 19.9 4.0 25 30-54 92-116 (126)
492 COG3334 Uncharacterized conser 20.3 3.3E+02 0.0071 20.5 5.2 41 22-63 66-106 (192)
493 TIGR03017 EpsF chain length de 20.2 1.3E+02 0.0028 22.9 3.0 28 33-60 177-204 (444)
494 PRK14087 dnaA chromosomal repl 20.1 1.6E+02 0.0034 23.7 3.7 36 3-43 412-447 (450)
No 1
>KOG4797|consensus
Probab=100.00 E-value=1e-36 Score=213.76 Aligned_cols=70 Identities=54% Similarity=0.672 Sum_probs=66.7
Q ss_pred cccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCCCCC
Q psy8522 7 HNGLILGVI-FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPN 76 (78)
Q Consensus 7 ~~~~~~~~~-~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~ 76 (78)
..|+.++++ ||||||||||||||||||||||+||+||+||++||++||+||++||.++|||||+||+++-
T Consensus 39 ~~~~VvaIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 39 SSGSVVAIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQL 109 (123)
T ss_pred CCCceEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhc
Confidence 457889999 9999999999999999999999999999999999999999999999999999999998763
No 2
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=99.97 E-value=2e-33 Score=177.35 Aligned_cols=57 Identities=65% Similarity=0.834 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCCCCCC
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLPHPNS 77 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~~~~ 77 (78)
|||||||||||||||||+||++|+||++||++||.||++||+++|||+++|++++-.
T Consensus 1 MdLVKtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q~~~~~~ 57 (59)
T PF01166_consen 1 MDLVKTHLMYAVREEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQLQSQQQ 57 (59)
T ss_dssp --SCCCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTTSSSSS-
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999999999999999998753
No 3
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.46 E-value=0.0059 Score=41.27 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
++++-+-.++. +.-++++.||.+|.+|.+.|..|..||.-||......
T Consensus 8 ~~l~~le~~l~-~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLG-QLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 3457899999999999999999999999999886543
No 4
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=96.45 E-value=0.016 Score=39.25 Aligned_cols=49 Identities=33% Similarity=0.458 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH-HhcCC
Q psy8522 24 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQET-LGQLP 73 (78)
Q Consensus 24 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~-l~q~~ 73 (78)
+|-||.| |.||-+.|+.+|+++++.|.+|..|=+-+|.-..+.. .+.++
T Consensus 6 LR~qLqF-vEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~ 55 (96)
T PF11365_consen 6 LRRQLQF-VEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLS 55 (96)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCC
Confidence 4889999 5899999999999999999999999999998775433 44443
No 5
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.39 E-value=0.0079 Score=41.21 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
+.-+|++.||.++.+|.+.|..|+.||.-||.....
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999988775
No 6
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.01 E-value=0.058 Score=34.37 Aligned_cols=42 Identities=33% Similarity=0.295 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+|.+|+|-+- +.+.||+.||++-..|.+.+..|+.||.-||.
T Consensus 12 ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 12 KIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6788887654 46789999999988888889999999988884
No 7
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=94.90 E-value=0.12 Score=30.55 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhc
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQ 71 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 71 (78)
.+..+.|+..|+.+|+++..++.+|+.|-..|+. +|+-+++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--~~~~ie~ 59 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN--DPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 3567889999999999999999999999888844 7776654
No 8
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=94.37 E-value=0.092 Score=39.79 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 27 HLMFAVREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 27 HLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
|-.=++|.||..--.++++|+.|...|-.||..||.+|.
T Consensus 101 yta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 101 YTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344579999999999999999999999999999999873
No 9
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=93.80 E-value=0.2 Score=36.40 Aligned_cols=37 Identities=43% Similarity=0.601 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCC
Q psy8522 29 MFAVREEVEVLKEKIAELMERIN---QLEMENSILKANAT 65 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~---~LE~EN~~Lk~~as 65 (78)
...+++|-+.||+++++|..++. +++.||.-||.+..
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999998888 77899999998653
No 10
>smart00338 BRLZ basic region leucin zipper.
Probab=93.74 E-value=0.45 Score=28.24 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-+=....+|+.|.....+|..+++.|+.|+..|+...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567888899999999999999999999888753
No 11
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=93.46 E-value=0.39 Score=29.16 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhc
Q psy8522 25 KSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQ 71 (78)
Q Consensus 25 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 71 (78)
-.|..+..+.++..++.+|+++..++++|+.|-+-|. +|+-+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~---~~~rIe~ 65 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS---RHERIEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHH
Confidence 3567788899999999999999999999999987665 4666554
No 12
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.38 E-value=0.16 Score=32.36 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|+..|-.+|..|..+..+|..||..||+..
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~ 30 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQE 30 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999998753
No 13
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=93.15 E-value=0.23 Score=32.68 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+...+++.|++|..++.+|+.||.+||..+
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999765
No 14
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=92.85 E-value=0.13 Score=27.54 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~ 52 (78)
+|++-||.+|.+|+.+.+.
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4899999999999987753
No 15
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.37 E-value=0.96 Score=30.18 Aligned_cols=42 Identities=33% Similarity=0.375 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQ-------LEMENSILKA 62 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~-------LE~EN~~Lk~ 62 (78)
||.||.|-+-- .+=|||.||++=..|.+.+.. |+.||.-||+
T Consensus 12 KIqqAvdtI~L-----LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 12 KVQQAIDTITL-----LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67788775432 344777777766666665444 6666666654
No 16
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=92.22 E-value=0.6 Score=27.20 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
..++.|..++.+|...|.+|+.++..|+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666666666665554
No 17
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=92.22 E-value=0.23 Score=33.47 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 25 KSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 25 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
-.-|.++-|+||+.|+.+|.+|+.++++|+.
T Consensus 87 L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 87 LNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556788899999999999999999998863
No 18
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=1 Score=30.21 Aligned_cols=42 Identities=31% Similarity=0.289 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIA-------ELMERINQLEMENSILKA 62 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~-------eL~er~~~LE~EN~~Lk~ 62 (78)
||.||.|-+.- ..=|||.|||+=. ++......|++||.-||+
T Consensus 12 KiqqAvdTI~L-----LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 12 KVQQAIDTITL-----LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899987643 3448899998755 445566678888888875
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.93 E-value=0.52 Score=29.99 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+-+..|+..|.+|.++|..|..||.-|+.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45667777777777777777777777764
No 20
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=91.55 E-value=0.23 Score=34.31 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.|+-.||.++..|+|.|+-|...+.+|-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655555555555555555443
No 21
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=91.22 E-value=0.29 Score=31.09 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
.++=.=+.+.|--|||.|+++.-+..+.+|+..||..
T Consensus 36 ~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 36 RLQSALSKLDLVTREEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455666899998866555555555555544
No 22
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.07 E-value=0.37 Score=34.13 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQETL 69 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 69 (78)
-.|+..||.++.+|.+.|..|..||.-||...+..++
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~ 57 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTL 57 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccc
Confidence 3589999999999999999999999999987765333
No 23
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.67 E-value=0.81 Score=34.62 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhCC
Q psy8522 31 AVREEVEVLKEKIAELMERIN----QLEMENSILKANAT 65 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~----~LE~EN~~Lk~~as 65 (78)
.+++|=+.||+++.+|..+.. .|+.||.-||.+..
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999988844443 38999999998754
No 24
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=90.27 E-value=0.67 Score=32.44 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
++++-|.-+-+-+..|-+-|++.|+++|.+|+++++.||.+
T Consensus 65 K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 65 KIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred hhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667788888899999999999999999999865
No 25
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.06 E-value=0.59 Score=30.88 Aligned_cols=41 Identities=32% Similarity=0.523 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcC
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQL 72 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 72 (78)
.||=|++++.|.+++.+...|++++|.+ ++.+-+.+.+.++
T Consensus 30 ~~a~~~~~~~l~~~~~~~~~Rl~~lE~~---l~~LPt~~dv~~L 70 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEHDRRLQALETK---LEHLPTRDDVHDL 70 (106)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHH
Confidence 5999999999999999999999999987 4555555555443
No 26
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=89.94 E-value=1.3 Score=29.10 Aligned_cols=42 Identities=43% Similarity=0.608 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HHH-hhCCHHHHhcCC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEM-----ENS----ILK-ANATQETLGQLP 73 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~-----EN~----~Lk-~~aspE~l~q~~ 73 (78)
++.|++--|++|+++..|+..||. ||. +.| ...||++|+.|-
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L 57 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFL 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 578899999999999999998864 554 233 357999987663
No 27
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=89.17 E-value=2.4 Score=27.27 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
-.++.+||+=+-.++.+.|+.++.++...|.+|..+=.-+|
T Consensus 67 ~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 67 EEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999998888888887755444
No 28
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=89.03 E-value=0.46 Score=32.22 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+..+|....+++|.+|-.|+-+|++||.+|
T Consensus 66 ~l~~eLk~a~~qi~~Ls~kv~eLq~ENRvl 95 (96)
T PF11365_consen 66 ELQEELKLAREQINELSGKVMELQYENRVL 95 (96)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccccc
Confidence 455666667788888888888899999743
No 29
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.72 E-value=1.8 Score=31.60 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
.-++-|=.-.+-.|+++|.+|..++..|..||.+||..--.
T Consensus 4 ~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788999999999999999999999999986543
No 30
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.61 E-value=1.6 Score=28.95 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
....+.+++.++.++++|..+|.+|+.|-..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3457788888999999999999999988888886
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=88.55 E-value=1.3 Score=32.60 Aligned_cols=35 Identities=31% Similarity=0.281 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
..=+++.|-+.|++.+.+|..+|.+|+.||.-|+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888887765
No 32
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.86 E-value=3.2 Score=26.48 Aligned_cols=39 Identities=31% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
++.|+.-|++..+= .+.++|..|..+...|+.||+.|+.
T Consensus 58 Le~aL~~VR~rK~~-------~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 58 LESALKRVRSRKDQ-------LLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred hhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667666654 4555555556666666777777765
No 33
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=87.75 E-value=2.5 Score=33.12 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-++||+++-.|+..+||..|++.|..|.++..+.+..=+.|..
T Consensus 310 ~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 310 NVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999998876555543
No 34
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=87.42 E-value=2 Score=28.17 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+.+.-.+.|-.+|.+..+.+.+|+.||.+|....
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888888888999999999998654
No 35
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.41 E-value=1.4 Score=28.12 Aligned_cols=29 Identities=45% Similarity=0.571 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 25 KSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 25 KsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
|.+++. ++++.|+.+...|.+.|..|..+
T Consensus 69 K~~~l~---~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 69 KDQLLM---EQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 57888888888888888888653
No 36
>smart00338 BRLZ basic region leucin zipper.
Probab=87.34 E-value=1.3 Score=26.32 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 40 KEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 40 Ke~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+..|.+|+.++..|+.||.-|+.-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~ 48 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKE 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666543
No 37
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=87.30 E-value=1.4 Score=25.65 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
=+--|..+.+|+.++..|+.||..|+.-
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888888888653
No 38
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.64 E-value=1.4 Score=36.75 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
-.+|.|+|=+-||..+.+|..++.+| ||..||+++..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E 69 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCE 69 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhh
Confidence 36899999999999999999999999 78888866543
No 39
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.30 E-value=2.4 Score=24.82 Aligned_cols=25 Identities=44% Similarity=0.542 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
..++.+|.+|..++.+++.||.-|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 40
>PF14645 Chibby: Chibby family
Probab=85.32 E-value=1.2 Score=30.37 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.+++..|+++++.|++.|+.|..++.+|=..
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888877433
No 41
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=84.98 E-value=0.66 Score=27.21 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-.|.-+|.+|+.++++|..||--||..+
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999764
No 42
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.60 E-value=4.7 Score=28.45 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 24 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 24 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.|....=.+..|...|.-+..-+++++..|+.||.-|
T Consensus 141 ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 141 EKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888899999999999999999999999765
No 43
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=84.36 E-value=6.4 Score=23.24 Aligned_cols=21 Identities=48% Similarity=0.628 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 41 EKIAELMERINQLEMENSILK 61 (78)
Q Consensus 41 e~I~eL~er~~~LE~EN~~Lk 61 (78)
..|.+|+.++..|+.||.-|+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 44
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.23 E-value=2.8 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
....++.+|.++..++.+|+.+|.-|+.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888888888877653
No 45
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.95 E-value=5.3 Score=27.36 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQETLG 70 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 70 (78)
+.-.|+..|++++.+|...++.|+.|-+-|++..|.++|.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~ 115 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELR 115 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3445566666666666666666666666666666655543
No 46
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=83.86 E-value=2.8 Score=31.89 Aligned_cols=35 Identities=40% Similarity=0.394 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCH
Q psy8522 32 VREEVEVLKEKIAELM---ERINQLEMENSILKANATQ 66 (78)
Q Consensus 32 VREEVEvLKe~I~eL~---er~~~LE~EN~~Lk~~asp 66 (78)
...|-+.||++++++. .++.+||.||.-||.+..-
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567788888887665 5678899999999987653
No 47
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=83.45 E-value=5.2 Score=27.47 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhCCHHHHhcCC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSI--------LKANATQETLGQLP 73 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~--------Lk~~aspE~l~q~~ 73 (78)
-.+.++++.+.++|++|+.++.+|+.=-.. ++..+||+-++-.+
T Consensus 77 ~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 128 (134)
T cd04779 77 REVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELSQQVLTLIQ 128 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHhHHHHH
Confidence 357788888899999888888887543333 45567787776544
No 48
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.41 E-value=2.6 Score=32.95 Aligned_cols=38 Identities=39% Similarity=0.482 Sum_probs=31.7
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIK------DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 16 ~ieQAM------DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+...|| |==|+-|+| +||.||.++.++++.+.++..|+
T Consensus 92 kyrkAMv~naQLDNek~~l~y----qvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 92 KYRKAMVSNAQLDNEKSALMY----QVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHhhhchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666 455888888 78999999999999999999886
No 49
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=83.40 E-value=3.2 Score=33.19 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCC
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQL---EMENSILKANAT 65 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~L---E~EN~~Lk~~as 65 (78)
.|.+++|=+.||+++++|..++.++ .+||..||...+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4889999999999999998777664 489999887654
No 50
>PF14645 Chibby: Chibby family
Probab=83.18 E-value=2.9 Score=28.56 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 42 KIAELMERINQLEMENSILK 61 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN~~Lk 61 (78)
...-|.+++.+|+.||++||
T Consensus 72 ~~~~l~~~n~~L~EENN~Lk 91 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLK 91 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33446666666666666665
No 51
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=81.79 E-value=5 Score=25.38 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
=.-||||..-=-=|.++.+.-++++|..|+.|+..||.
T Consensus 41 l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 41 LSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34589998888889999999999999999999999984
No 52
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=81.25 E-value=5 Score=25.28 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+++..|+++|++|+++...++.+...++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888887777765
No 53
>KOG3634|consensus
Probab=79.79 E-value=3.1 Score=34.24 Aligned_cols=34 Identities=44% Similarity=0.638 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy8522 24 VKSHLMFAVREEV--------EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 24 VKsHLm~AVREEV--------EvLKe~I~eL~er~~~LE~EN 57 (78)
-|.-.+.|+|.++ +.||++|++|-.+|-+||.|-
T Consensus 212 akk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EK 253 (361)
T KOG3634|consen 212 AKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEK 253 (361)
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556789999987 679999999999999999874
No 54
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.63 E-value=5.8 Score=29.26 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
=+.++|...|++++..|+.++..|+.+.+.+..
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999999999999998887754
No 55
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=79.63 E-value=10 Score=23.75 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+...--|++.++.++..|.+.+++|..|-+-|.+.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 33444567777777777777777777776665543
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.47 E-value=5.5 Score=28.99 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+++...|-.+.+.-.+|+..||.+|..|..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~ 32 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLES 32 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 567888999999999999999999999874
No 57
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.81 E-value=5.9 Score=23.23 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+-++||..-..|...+..|..||.-|++-
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888999999998888764
No 58
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=78.61 E-value=3.9 Score=25.61 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN 57 (78)
|+.|.++|+-|+..+..+|.+-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888777777653
No 59
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.50 E-value=5.3 Score=27.35 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
|...+..+|.+|.+++.+|+.+++-|
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSL 98 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.28 E-value=5.8 Score=26.48 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.+..|+=.|.||.++|.+|..|+.-++.
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778999999999999999999888664
No 61
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=77.45 E-value=3.9 Score=28.56 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=31.8
Q ss_pred HHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDL-VK---SHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 16 ~ieQAMDL-VK---sHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
++|+++|- |. +.|...-|+||+.|..+|.+|..++.+|..
T Consensus 87 klE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 87 KLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777664 33 456677899999999999999999998864
No 62
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.69 E-value=20 Score=25.80 Aligned_cols=44 Identities=32% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 21 KDLVKSHLMFAVREEVE------VLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 21 MDLVKsHLm~AVREEVE------vLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..|.++...|++|.-.+ .++.+|++|...+++|+.+-.-|+..+
T Consensus 101 ~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 101 QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888887544 456666666666666666655555443
No 63
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=76.24 E-value=4 Score=29.59 Aligned_cols=21 Identities=43% Similarity=0.314 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q psy8522 44 AELMERINQLEMENSILKANA 64 (78)
Q Consensus 44 ~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+..+++++|+.||.-||.+.
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELL 176 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999999865
No 64
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.98 E-value=12 Score=23.68 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
..+|+..+|++|++++.+...++.+=.-
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888887776443
No 65
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=75.75 E-value=7.1 Score=26.98 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8522 43 IAELMERINQLEMENSILKA 62 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~ 62 (78)
...|..++.+||.||++||-
T Consensus 74 ~~rlkkk~~~LeEENNlLkl 93 (108)
T cd07429 74 VLRLKKKNQQLEEENNLLKL 93 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44577799999999999984
No 66
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.39 E-value=4.5 Score=28.51 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy8522 42 KIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
...||..++.+|+.||.-||.-
T Consensus 4 t~EeLaaeL~kLqmENk~LKkk 25 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKK 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999864
No 67
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=75.18 E-value=15 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+-..-.+..+|..++.++.+++.||.-|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888888888875
No 68
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=75.04 E-value=16 Score=22.86 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHhcC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA----NATQETLGQL 72 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~----~aspE~l~q~ 72 (78)
++-+.-.+-.++..++.+..+|+.||.-|+- +.+|+.++++
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~i 77 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERI 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4455566778899999999999999999874 6777776643
No 69
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=74.72 E-value=12 Score=24.45 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+..++..|++.+.+|..|+...+.||.-|++
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777664
No 70
>KOG4005|consensus
Probab=74.54 E-value=5.8 Score=31.86 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.+.-+|++|.++|..|..||..||.
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777777777777764
No 71
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=74.27 E-value=11 Score=22.98 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.-+++.+..++.++.+++++++.||.=+..+..
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~ 34 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEK 34 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888876665543
No 72
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.76 E-value=9.6 Score=28.14 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
++.++.+|.+|.++|++|..|...+
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 73
>KOG3119|consensus
Probab=73.53 E-value=11 Score=28.60 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+--.-+.+=+-|||+.=+.=|.+..|...|+..||.||..||.-+
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v 238 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQV 238 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667789998888888888888889999999998888754
No 74
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.36 E-value=8.9 Score=25.69 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
=..|...|.++..|+..|...|++|-
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888874
No 75
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=73.31 E-value=30 Score=25.67 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
-.++|+|.|+++|+.|+.-.+.+-++-+.++...+.+
T Consensus 76 ~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qe 112 (157)
T COG3352 76 DIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQE 112 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHH
Confidence 3589999999999999999988888888888776654
No 76
>KOG4343|consensus
Probab=72.95 E-value=6.4 Score=34.55 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|-++-|+.+|.+|...+.+|..||..||.
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~ 330 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKR 330 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 366888999999999999999999999986
No 77
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.09 E-value=15 Score=23.07 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|=+-.-.++.+....+.+|..||..|+.
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555566666666665553
No 78
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=71.63 E-value=6.6 Score=28.38 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
==|.|.|.+..+|..|+.++.++|.
T Consensus 122 ~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 122 QHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999999999663
No 79
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=71.53 E-value=23 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.++|.+.++..+-+ +.++++.|.+.|.++.+++.+++.
T Consensus 85 ~~eA~~~l~~r~~~-l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 85 LEEAIEFLKKRLET-LEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888777665 455666666666666666666654
No 80
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=70.92 E-value=18 Score=27.35 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhCCHHHHhcCCC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMEN-------SILKANATQETLGQLPH 74 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN-------~~Lk~~aspE~l~q~~~ 74 (78)
-|-..||.+|.+|+.++.+|.... ..|+...++.|+..+..
T Consensus 18 ~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs~~Qi~~lk~ 65 (236)
T PF12017_consen 18 IENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFSEDQIRNLKN 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHhc
Confidence 344556666666666555554432 36788899999987764
No 81
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.89 E-value=10 Score=30.44 Aligned_cols=31 Identities=39% Similarity=0.570 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+.++|.+.|.....++.+|+..||.||+.|-
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666677777777777664
No 82
>PRK14151 heat shock protein GrpE; Provisional
Probab=70.72 E-value=4.3 Score=29.38 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.++++.|+++++++.++...+..|-..+|.....|
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE 60 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQD 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555555544433
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=70.46 E-value=15 Score=25.24 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=20.1
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 11 ILGVI--FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 11 ~~~~~--~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+-||+ -|.+=+|.|-.-.. ++-.|...||+++..|.+++.+++.
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye-~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYE-AFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44665 35555555543222 1223444444444444444444444
No 84
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.41 E-value=6.2 Score=22.94 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 39 LKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~L 60 (78)
+|-+++.+..++.++|.|+.-|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555433
No 85
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=70.06 E-value=8 Score=27.71 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|+++...++|..++.+|+.||.-|...+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777888888888888888777444
No 86
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=70.00 E-value=16 Score=28.95 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+++++.|+.++..+.++..+++.|-.-+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAK 56 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666555555555555544443
No 87
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.46 E-value=9.8 Score=32.05 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|-|++.+..+-.+++.++..||.||.-|+...
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 78888888888999999999999999998765
No 88
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=69.02 E-value=10 Score=28.02 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 39 LKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~Lk 61 (78)
|+++|.+|..++..|+.||.-|+
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~ 131 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLK 131 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544444
No 89
>PHA03162 hypothetical protein; Provisional
Probab=68.84 E-value=6.6 Score=28.52 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q psy8522 43 IAELMERINQLEMENSILKANA 64 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..||..++.+|+.||.-||.-.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998754
No 90
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.61 E-value=14 Score=27.99 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
.=||-||++-||.-.+.|++.++.|-..+.
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~r 91 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQAR 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999887765544433
No 91
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=68.54 E-value=7.8 Score=29.72 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
|++.||.||..|-.|+..||.||.
T Consensus 196 ~~~~lrrQi~klnrRl~~lE~~n~ 219 (246)
T PF05644_consen 196 DAASLRRQIIKLNRRLQALEEENK 219 (246)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhH
Confidence 455999999999999999999996
No 92
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=68.53 E-value=8.7 Score=30.71 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.||-+=.-|.+.-|.|||.+-++|.||+.++.+|+.|=.-|
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l 315 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDL 315 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445678889999999999999999999999984444
No 93
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=68.25 E-value=7 Score=24.52 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q psy8522 22 DLVKSHLMFAVREEVEVLK---EKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLK---e~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|+.+-.++.-.+.+.++=- .-|-+|.+|+.+|+.|+..||+
T Consensus 41 ~l~rl~~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 41 DLARLRRIRRLHRDLGINLEGIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444444455444322 3467888888888888888874
No 94
>PF15456 Uds1: Up-regulated During Septation
Probab=67.39 E-value=9.8 Score=26.29 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~ 55 (78)
-||||.||.++.-|..|+..+..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~ 43 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRR 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999887763
No 95
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=67.27 E-value=46 Score=24.22 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
--...+. ++++|+..+|.+|..|..++..|+..|.-|...
T Consensus 206 ~~~~~~~-~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 206 KSSEELE-SAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-hhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 3344455 568888888888888888888888888777654
No 96
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=67.22 E-value=7.9 Score=25.76 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
+|...|++++...+.+...|..||+
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhh
Confidence 6788888888888888888888886
No 97
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=67.12 E-value=9.6 Score=24.28 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|++|.+.++.+..|--+.+..|..||
T Consensus 43 ~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 43 QKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 78899999999999999999998887
No 98
>PRK14157 heat shock protein GrpE; Provisional
Probab=67.03 E-value=14 Score=28.28 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
++..+++.|+++++++.++...+..|...+|.....|.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~ 118 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQ 118 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999888887766554
No 99
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.92 E-value=24 Score=25.62 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.-++|+||+ .+||+.+|.+.......+..+..||.-|+.-
T Consensus 23 ~~NL~lIksL-----Keei~emkk~e~~~~k~m~ei~~eN~~L~ep 63 (201)
T PF13851_consen 23 LNNLELIKSL-----KEEIAEMKKKEERNEKLMAEISQENKRLSEP 63 (201)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3446667764 6888888888888888888888888877653
No 100
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=66.91 E-value=15 Score=22.57 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|.-+..+=-.||+++.+ |...+..|+.+|.-||.+.
T Consensus 21 L~~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 21 LENFLKRYNKVLLDRAA-LIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33445555678887755 5555699999999998764
No 101
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=66.87 E-value=9.4 Score=26.76 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERI 50 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~ 50 (78)
-.++++.-=|-+.+++|+.|++|++.|+.+.
T Consensus 76 ~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 76 DLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346777778899999999999999999875
No 102
>PHA03155 hypothetical protein; Provisional
Probab=66.83 E-value=7.9 Score=27.43 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q psy8522 43 IAELMERINQLEMENSILKANA 64 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..||..++.+|+.||.-||.-.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998643
No 103
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.83 E-value=19 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-++.|-.+|.+|-.++.+|..+-+.||.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888875
No 104
>KOG4593|consensus
Probab=66.13 E-value=30 Score=30.83 Aligned_cols=48 Identities=33% Similarity=0.428 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 14 VIFAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 14 ~~~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+++..++.-=-+.|+-|+ |+|-+-|.+.|.....++..||.||.-||.
T Consensus 477 ~kdL~s~L~~~~q~l~~q-r~e~~~~~e~i~~~~ke~~~Le~En~rLr~ 524 (716)
T KOG4593|consen 477 LKDLQSQLSSREQSLLFQ-REESELLREKIEQYLKELELLEEENDRLRA 524 (716)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566788887 789999999999999999999999999884
No 105
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.85 E-value=17 Score=24.46 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-+..|-++|.+|...+..|..||.-||-
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777777777763
No 106
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.79 E-value=12 Score=31.59 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-++-.++.++.+|..+|..|..||.-||+
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888876
No 107
>PRK14143 heat shock protein GrpE; Provisional
Probab=65.56 E-value=17 Score=27.67 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
...++++.|++++++|.++..++..|...+|.....|.
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~ 108 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQ 108 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999888888888887766554
No 108
>PF13974 YebO: YebO-like protein
Probab=65.42 E-value=12 Score=24.84 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 39 LKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
--|||.=|++=..|-.+.|.+||.+++...
T Consensus 25 ANEQI~LL~~ileqQKrQn~LL~rL~~~~~ 54 (80)
T PF13974_consen 25 ANEQIELLEEILEQQKRQNALLRRLCEANE 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 468898888889999999999999998766
No 109
>KOG0977|consensus
Probab=65.29 E-value=12 Score=32.01 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
++|.-.|-.+.+.-++|+..||.||+-|..
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~ 70 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEH 70 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999998754
No 110
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=65.27 E-value=21 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
|+.||.|+..|+.++..|+.-=+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776544433
No 111
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=64.71 E-value=26 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~E 56 (78)
+=.+.|.++++++.+++.+|+.|
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44588899999999999999876
No 112
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=64.64 E-value=7.9 Score=23.77 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 44 AELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 44 ~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
.....+++.|+.||..||.-...++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888888888887554443
No 113
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=64.52 E-value=27 Score=20.67 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~ 52 (78)
+||.+|++..+||...+.+
T Consensus 22 dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 22 DEVATLEENLRELQDEIDE 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7999999999999887643
No 114
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=63.81 E-value=13 Score=25.42 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 38 VLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~ 59 (78)
.+++++.+|+.++..|+.+..-
T Consensus 109 ~~~~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 109 ELQERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666555443
No 115
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=63.42 E-value=30 Score=25.86 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
.|.+-|-+++++|+.+ +.|..++.+|.+.+.++-.++
T Consensus 112 ~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~ 149 (312)
T PF00206_consen 112 NDIVDTALRLQLRDALLELLLERLKALIDALAELAEEH 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888899999999999 889999999999999887765
No 116
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.42 E-value=27 Score=22.68 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=21.4
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 11 ILGVIFAYHI----KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 11 ~~~~~~ieQA----MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.||.++|++- ..-|++-+-|. -..++.|.+++..|..++..++.
T Consensus 55 ~VG~vlv~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 55 SVGNLLVKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HhchhhheecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665544 33344444443 44445555555555555554443
No 117
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=63.26 E-value=5.5 Score=28.17 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 27 HLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 27 HLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+|.+|...+..|...-..|.+.+..|.+||.-|+.-.
T Consensus 8 q~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el 45 (181)
T PF09311_consen 8 QVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGEL 45 (181)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666777788888888887653
No 118
>KOG4571|consensus
Probab=62.91 E-value=16 Score=29.29 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
=|+--|.+.|-.+=.+|.++.+.||.|-.+||++.-
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888999999999999998753
No 119
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=62.85 E-value=11 Score=28.49 Aligned_cols=36 Identities=36% Similarity=0.301 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
+-+-+|-+.|...|..+.+.+..|..||.-|+.++.
T Consensus 121 ~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 121 EEALEENEKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888887764
No 120
>PRK14151 heat shock protein GrpE; Provisional
Probab=62.77 E-value=21 Score=25.82 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
||.+||--..-.-|--++++.|+++|.+|++++..+ .+.+||..|.-|-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~le~e~~el--~d~~lR~~Ae~eN 52 (176)
T PRK14151 4 EQTLDLQAPEAAQAEAAAGDDLTARVQELEEQLAAA--KDQSLRAAADLQN 52 (176)
T ss_pred hhhhhhcccccccccccchhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 456666655556666778888999999999888866 4778887765443
No 121
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.68 E-value=40 Score=21.88 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+-...|+++|..++.++..|+..=..|+.
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~ 95 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666665555543
No 122
>PRK14161 heat shock protein GrpE; Provisional
Probab=62.37 E-value=19 Score=26.12 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
++|++.|+++++++.++...+..|...+|.....|.
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~ 60 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKAR 60 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888777776655543
No 123
>PRK14139 heat shock protein GrpE; Provisional
Probab=62.12 E-value=22 Score=26.11 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
...+++.|++++++|.++...+..|...+|.....|
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877777776666655444
No 124
>PRK01203 prefoldin subunit alpha; Provisional
Probab=62.09 E-value=40 Score=23.78 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLP 73 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 73 (78)
|-+|..+++++|..|..++++|+.--+-+.. +-+.|..+.
T Consensus 5 ~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~--~ie~L~~~~ 44 (130)
T PRK01203 5 VEAQLNYIESLISSVDSQIDSLNKTLSEVQQ--TISFLSDNE 44 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccc
Confidence 5678899999999999999999887766644 555565543
No 125
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.99 E-value=39 Score=21.60 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 11 ILGVIFAYHIKDLVKSHL----MFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 11 ~~~~~~ieQAMDLVKsHL----m~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
.||..+|++--|=+..+| -+ .-.+++.|.+++.++..++..++
T Consensus 51 ~VG~vfv~~~~~ea~~~Le~~~e~-le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 51 LVGNVLVKQEKEEARTELKERLET-IELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HhhhHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777666555555443 22 23344444444444444444444
No 126
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.97 E-value=16 Score=27.75 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|-.|.+..|||+.++++.++..-||+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555555554
No 127
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.88 E-value=17 Score=30.35 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 20 IKDLVKSHLMF------AVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 20 AMDLVKsHLm~------AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+..+|..+.- .+.+++..|+.+|.+|+..+..|+.++..|..-
T Consensus 483 e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 483 ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666543 356999999999999999999999999999853
No 128
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.09 E-value=25 Score=25.98 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
..+|-+.|++++.++..++..|+.||.-++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777767766666654
No 129
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=60.63 E-value=27 Score=20.39 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|.|+.+|..+.++=++.-.+||+-..-|+..
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 47899999999999999999999888777643
No 130
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.57 E-value=28 Score=24.42 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
....|+.|+.+|.+|+.++.+++.+-..|+...
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999888887644
No 131
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.15 E-value=30 Score=25.66 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
+.|-.|--.---.+-..|++.|++++.+|.++...+..|...+|.....|
T Consensus 24 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE 73 (194)
T PRK14153 24 EEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTARE 73 (194)
T ss_pred HHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444567778888899999999988888888877777665544
No 132
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=60.12 E-value=14 Score=24.03 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8522 43 IAELMERINQLEMENSILKA 62 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~ 62 (78)
|-+|.+|+.+|++|+..|++
T Consensus 73 vl~LLd~i~~Lr~el~~L~~ 92 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQ 92 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777765
No 133
>KOG3819|consensus
Probab=59.87 E-value=15 Score=31.63 Aligned_cols=40 Identities=28% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
.+-.=+++.||.---.+..+|+.|-..|+.||--||++|-
T Consensus 131 r~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~ 170 (513)
T KOG3819|consen 131 RQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCH 170 (513)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4556689999999999999999999999999999999874
No 134
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=59.54 E-value=5.9 Score=25.33 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
..|...|+.+|.+|..++..++....-|
T Consensus 38 ~~e~~~L~~~~~~l~~~l~~~~~~~~~l 65 (131)
T PF05103_consen 38 QRENAELKEEIEELQAQLEELREEEESL 65 (131)
T ss_dssp HHHHHHHHHHHHCCCCT-----------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3444444444444444444444443333
No 135
>PRK14158 heat shock protein GrpE; Provisional
Probab=59.37 E-value=26 Score=25.91 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
...++++.|++++.+|.++...+..|...+|.....|
T Consensus 44 ~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 44 ELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888888888777777665544
No 136
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=58.99 E-value=13 Score=26.56 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMER 49 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er 49 (78)
..|++...|+.++.+|++.
T Consensus 51 ~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 51 RLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655543
No 137
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=58.97 E-value=17 Score=23.66 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN 57 (78)
|..|.++|+-|.+.+.+|+.|-
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999998874
No 138
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.59 E-value=28 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
...+++.|++++.+|.++..++..|...+|.....|.
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~ 80 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKER 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888877877665553
No 139
>PRK14148 heat shock protein GrpE; Provisional
Probab=58.37 E-value=19 Score=26.72 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
-+..++++.|++++++|.++...+..|...+|...-.|
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777766666554443
No 140
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.18 E-value=15 Score=29.34 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
.++++++..|+++|.+|+++...++.+...
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555555444433
No 141
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=58.16 E-value=10 Score=29.06 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
.+|-+=.-|.+.-|.||+.|-++|-||+.++..|.
T Consensus 258 ~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 258 VVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444567778888888888888888877764
No 142
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.14 E-value=25 Score=24.12 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-+..|-+++.+|...+..|..||..|+-
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777777777763
No 143
>PRK10963 hypothetical protein; Provisional
Probab=57.89 E-value=17 Score=26.36 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQL 53 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~L 53 (78)
++.||++|++|+.++.+|
T Consensus 46 ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 46 MARQRNHIHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 144
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=57.62 E-value=16 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|.-+--..|--.|++.+| ||.+|..++.+|+.+-.-|...+
T Consensus 14 l~~s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 14 LFLSLPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHhccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccccccc
Confidence 444444466678888888 99999999999998866544433
No 145
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=57.61 E-value=15 Score=30.59 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
--++++..|..||+.|..++++|+.-|
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~~ 65 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQN 65 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999998874
No 146
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=57.34 E-value=28 Score=23.38 Aligned_cols=52 Identities=29% Similarity=0.341 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHH--HHHHH--------HHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 16 FAYHIKDLVKSHLM--FAVREE--VEVLK--------EKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 16 ~ieQAMDLVKsHLm--~AVREE--VEvLK--------e~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+++|++.|-..|- |--.-| |-.|| .+|.+|..++..|..||.-|+.-...+
T Consensus 12 ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 12 EVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665442 222222 34444 788999999999999999888754433
No 147
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=57.29 E-value=46 Score=20.91 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
+++|.+.++..+-. +++..+.|..+|+++..++.+++..
T Consensus 75 ~~eA~~~l~~r~~~-l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 75 LEEAIEFLKKRIKE-LEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888777654 4567777777777777777666543
No 148
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.95 E-value=32 Score=24.44 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAV------REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 17 ieQAMDLVKsHLm~AV------REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.|.=.+.+-+.+-.++ +.|++.|+++|..+....++|+.|=..|+
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555 45788888888888888888877766555
No 149
>KOG0982|consensus
Probab=56.93 E-value=22 Score=30.52 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCH
Q psy8522 34 EEVEVLKEKIAELM-----ERINQLEMENSILKANATQ 66 (78)
Q Consensus 34 EEVEvLKe~I~eL~-----er~~~LE~EN~~Lk~~asp 66 (78)
+|+..++++-+.|+ -|+.+|+.||+-||.+++.
T Consensus 285 rEil~k~eReasle~Enlqmr~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 285 REILIKKEREASLEKENLQMRDQQLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788777665 4678899999999998763
No 150
>COG3553 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.93 E-value=10 Score=26.25 Aligned_cols=17 Identities=53% Similarity=0.847 Sum_probs=14.3
Q ss_pred HHHHHHHH-HHHHHHHHH
Q psy8522 21 KDLVKSHL-MFAVREEVE 37 (78)
Q Consensus 21 MDLVKsHL-m~AVREEVE 37 (78)
-|.|-+|+ +||-|||..
T Consensus 72 e~VVa~Hi~rfafrEel~ 89 (96)
T COG3553 72 EDVVASHIDRFAFREELA 89 (96)
T ss_pred HHHHHHHHHHHHhhHHhh
Confidence 47899998 899999865
No 151
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=56.90 E-value=24 Score=23.56 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+..++.+...|..++..|+.|...|+.-
T Consensus 58 qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 58 QIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33455555555555555555555555544
No 152
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=56.73 E-value=30 Score=22.15 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+..++..+..|..+...++.||..|..-
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~ 102 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEE 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999988653
No 153
>PRK14148 heat shock protein GrpE; Provisional
Probab=56.57 E-value=31 Score=25.55 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
++..|++.|+++|.+|.+++.+| .+.+||..|.-|-
T Consensus 37 ~~~~e~~~l~~~l~~l~~e~~el--kd~~lR~~Ae~eN 72 (195)
T PRK14148 37 SVEEQLERAKDTIKELEDSCDQF--KDEALRAKAEMEN 72 (195)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 35677888999999999888876 5778887775543
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.44 E-value=35 Score=26.29 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-+..+|++.|+...++|.+.+..||.|+.-|.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQ 78 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666767777777777777766655543
No 155
>PRK14127 cell division protein GpsB; Provisional
Probab=56.28 E-value=27 Score=23.93 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
|-++.+.|-..|.+|.+++.+|+.+..-++.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666655554
No 156
>KOG0977|consensus
Probab=55.96 E-value=5.1 Score=34.17 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.||||..++.+|.+|-.|++.||..|+.|-..+
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I 326 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRI 326 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHH
Confidence 689999999999999999999999888876543
No 157
>PF15058 Speriolin_N: Speriolin N terminus
Probab=55.74 E-value=21 Score=27.39 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLE------MENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE------~EN~~Lk~~a 64 (78)
|.|++||..|+..|.+|. +||..||...
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~eLksaL 41 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHELKSAL 41 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665554 6888888873
No 158
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=55.54 E-value=40 Score=22.45 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIA------ELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~------eL~er~~~LE~EN~~Lk~~a 64 (78)
+.++|+++|++||. ...-.|-+|..||.-|+.+.
T Consensus 28 ~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 28 ALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888887764 33445677788888888776
No 159
>PRK14155 heat shock protein GrpE; Provisional
Probab=55.46 E-value=30 Score=25.79 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
.++++.|++++++|.++..++..|...+|.....|.
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~ 54 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAEREM 54 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888887777776655543
No 160
>PRK14140 heat shock protein GrpE; Provisional
Probab=55.29 E-value=21 Score=26.34 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+++.|+++|++|.++...+..|...+|..
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444433
No 161
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=54.71 E-value=21 Score=21.92 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
.|-.|+..|--. +-.-||-+-++|++|+.|-..|-
T Consensus 5 EAkelLqe~~d~-IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 5 EAKELLQEHYDN-IEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----------TH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444332 22346777888888888866653
No 162
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=54.27 E-value=13 Score=30.04 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q psy8522 44 AELMERINQLEMENSILKANA 64 (78)
Q Consensus 44 ~eL~er~~~LE~EN~~Lk~~a 64 (78)
.-+++|++||+.||.+||+-.
T Consensus 217 es~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999754
No 163
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.93 E-value=62 Score=22.60 Aligned_cols=42 Identities=31% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLK-------EKIAELMERINQLEMENS 58 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLK-------e~I~eL~er~~~LE~EN~ 58 (78)
+.+-|+-.=+-|..--|||.|+.+ ++.+.|+.|+.+||.-.+
T Consensus 42 ~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 42 FRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555666667788888764 566777777777776443
No 164
>PRK14139 heat shock protein GrpE; Provisional
Probab=53.57 E-value=23 Score=26.07 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.--|++.|+++|.+|++++.+| .+.+||..|.-|
T Consensus 30 ~~~e~~~l~~~l~~le~e~~el--kd~~lR~~Aefe 63 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAEL--QDSFLRAKAETE 63 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3456788888888888888866 577788776544
No 165
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=53.41 E-value=48 Score=20.76 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
-.-+.+++++.|+.++..+..+...++.+=.+|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445678888888999988888888888776655
No 166
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.40 E-value=39 Score=26.97 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.-+++++++.|+.+++++.++...++..-.+|..+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999998886
No 167
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.39 E-value=25 Score=28.05 Aligned_cols=26 Identities=46% Similarity=0.526 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+.|.++++.|++.|.+|..|-+-|+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888888888888888777
No 168
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.01 E-value=58 Score=21.77 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
...+-+.+.|+..+..|.+++..+|.|...+..
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777765543
No 169
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.88 E-value=43 Score=26.63 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
+.++++..||++|++|+.+...+|.+=.-
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655433
No 170
>PRK14147 heat shock protein GrpE; Provisional
Probab=52.68 E-value=33 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+++.|++++++|.++...+..|...+|.....|
T Consensus 25 ~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 25 AEVESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888877777776666555444
No 171
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.33 E-value=50 Score=22.71 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE 54 (78)
.++++.|+..|+.|..+...++
T Consensus 151 ~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 151 KEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666655555554
No 172
>PRK15396 murein lipoprotein; Provisional
Probab=51.94 E-value=43 Score=21.78 Aligned_cols=30 Identities=13% Similarity=0.412 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+||.|..++..|..++.++..+-+-+|.-
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~ 54 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSD 54 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999888777753
No 173
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=51.90 E-value=18 Score=24.31 Aligned_cols=38 Identities=37% Similarity=0.449 Sum_probs=21.8
Q ss_pred cchHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy8522 9 GLILGVIFAYH-IKDLVKSHLMFA----VREEVEVLKEKIAELM 47 (78)
Q Consensus 9 ~~~~~~~~ieQ-AMDLVKsHLm~A----VREEVEvLKe~I~eL~ 47 (78)
-|..+|++|.. .||. -.||.+| +-|||+.||+.|.-|-
T Consensus 28 iSl~DyImiKRGS~Dm-Pe~l~~~~~~QideeV~~LKe~IdaLN 70 (79)
T PF10398_consen 28 ISLVDYIMIKRGSQDM-PEHLNMAFLAQIDEEVEKLKEHIDALN 70 (79)
T ss_dssp --HHHHHHHHTTSS----TTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhcccCCcC-cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665432 2332 3455554 6899999999997763
No 174
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.82 E-value=21 Score=31.54 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.++=|+-|+++|++|...+.+++.|+..|+.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554
No 175
>PRK14154 heat shock protein GrpE; Provisional
Probab=51.54 E-value=41 Score=25.32 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
..+++.|++++++|.++...+..|-..+|.....|
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE 92 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIERE 92 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777666666554443
No 176
>KOG3759|consensus
Probab=51.19 E-value=19 Score=31.50 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~ 58 (78)
|+.||.||.+|+.=++-|+.||.
T Consensus 229 V~QLkTQItDLErFInFlQ~e~~ 251 (621)
T KOG3759|consen 229 VDQLKTQITDLERFINFLQDEVG 251 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999874
No 177
>PRK14158 heat shock protein GrpE; Provisional
Probab=51.17 E-value=28 Score=25.73 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
++++.|+++|.+|++++..| .+.+||..|.-|
T Consensus 40 ~~~~~le~~l~~le~e~~el--~d~~lR~~Aefe 71 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAAN--WDKYLRERADLE 71 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 35677777777777777755 466777665443
No 178
>KOG2685|consensus
Probab=51.15 E-value=63 Score=27.20 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
|+||.+---|..-.||..|+..|.-|..++.+-|..-..|
T Consensus 338 vELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L 377 (421)
T KOG2685|consen 338 VELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLL 377 (421)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998887765555
No 179
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=51.08 E-value=49 Score=20.26 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE 54 (78)
..+-.+.+.+++.+|+.+...|.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~l~ 97 (100)
T cd00592 75 LAALLALLDEKLAELEEKIARLE 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888888888887775
No 180
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=50.92 E-value=31 Score=28.08 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIA----ELMERINQLEMENSIL 60 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~----eL~er~~~LE~EN~~L 60 (78)
+|||.- --|.||-|+.+++.+ .++.|+++||.+|.++
T Consensus 12 ~li~~l--a~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~ 52 (328)
T PF15369_consen 12 NLIKEL--ARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELI 52 (328)
T ss_pred HHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455542 237788777666654 5788999999999875
No 181
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=50.83 E-value=49 Score=23.55 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
.|.|--..+|+|-++ +--|+++||.+|+.|.+=-..|.
T Consensus 96 ~iY~d~~aWk~hr~~-ID~eIe~Lq~Ki~~LKeiR~hLk 133 (145)
T PF12548_consen 96 VIYQDPKAWKDHRLH-IDHEIETLQDKIKNLKEIRGHLK 133 (145)
T ss_pred hhhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777789999998 46788999999998877555543
No 182
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=50.40 E-value=88 Score=22.10 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDLVKSHL-----MFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 16 ~ieQAMDLVKsHL-----m~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
.+..+.+.+..|- ....|.|++.|.++|+++..++...+.+=
T Consensus 13 ~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 13 ELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888886 45677788888888888877777766653
No 183
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.40 E-value=38 Score=27.91 Aligned_cols=28 Identities=39% Similarity=0.550 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+|+..|.+++.+|+++.++|+.+-..|+
T Consensus 100 ~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 100 KEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444445444444444444444
No 184
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=50.32 E-value=34 Score=24.38 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETL 69 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 69 (78)
-+|-|+-|+-.|..+|.+-..+++.|++|= +.+-+||-+
T Consensus 61 ~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV---~dLss~eRI 99 (120)
T COG4839 61 KAYQVQGEITDLESKISEQKTENDDLKQEV---KDLSSPERI 99 (120)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHH---HHhccHHHH
Confidence 367788898888888888888888888774 344555543
No 185
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=50.06 E-value=36 Score=26.07 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
...++++.||++..+|..++.+++.+++..++
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~ 67 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQ 67 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666544443
No 186
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.98 E-value=32 Score=22.99 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQL 53 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~L 53 (78)
..|++.++.+|.+|..+|.-|
T Consensus 104 e~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666544
No 187
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=49.77 E-value=32 Score=20.45 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHH---HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVK---SHLMFAVREEV-----EVLKEKIAELMERINQLEM 55 (78)
Q Consensus 18 eQAMDLVK---sHLm~AVREEV-----EvLKe~I~eL~er~~~LE~ 55 (78)
++|.++-+ .+||-+++.|. ..++.+|.+..+|..+|..
T Consensus 23 ~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~ 68 (75)
T cd02656 23 EEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544 47788887664 6788899999999888764
No 188
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.74 E-value=23 Score=21.31 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhCCHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLE--MENSILKANATQETLG 70 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE--~EN~~Lk~~aspE~l~ 70 (78)
-.|++-|..++..++..+..++ .-|.-+-..||++.++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve 42 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVE 42 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHH
Confidence 3566777777777777777666 3444555666666554
No 189
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.08 E-value=61 Score=22.77 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
|++++.++++|.+..+++..+...+.-.+
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 190
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=49.05 E-value=64 Score=21.48 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-+..+..+|+.+..++..|..+|..|++.+
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei 80 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEI 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777776654
No 191
>PRK14159 heat shock protein GrpE; Provisional
Probab=48.82 E-value=41 Score=24.50 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
-++++.|+++++++.++...+..|...+|.....|.
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~ 64 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEK 64 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999988888888887777665543
No 192
>PLN02678 seryl-tRNA synthetase
Probab=48.38 E-value=54 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
..+|+..||++|++|+.+..+++.+=.-
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777776666443
No 193
>PRK14164 heat shock protein GrpE; Provisional
Probab=48.31 E-value=36 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+++.|+++++++.++...+..|...+|.....|
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE 110 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERE 110 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988888888766544
No 194
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.29 E-value=56 Score=26.06 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
..+|+..||++|++|+++..++|.+=.-
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677777777776666665443
No 195
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=47.87 E-value=69 Score=20.41 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
..+.+++.|+..|..+++++..+..=..+|....++
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~ 120 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555555555555555555555566555543
No 196
>PRK14163 heat shock protein GrpE; Provisional
Probab=47.83 E-value=50 Score=24.98 Aligned_cols=36 Identities=8% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
..++++.|++++.+|.++..++..|-..+|.....|
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888888877777665544
No 197
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=47.39 E-value=1e+02 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+-||=-|-.=+...-..|..|.+-|..|..||.=||.+|
T Consensus 40 g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 40 GRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666667777788999999999999999999876
No 198
>PRK14145 heat shock protein GrpE; Provisional
Probab=46.87 E-value=55 Score=24.36 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
...++++.|++++++|.++...+..|...+|.....|
T Consensus 49 ~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE 85 (196)
T PRK14145 49 ELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKE 85 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888877777665544
No 199
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.86 E-value=54 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
+..++++.|++++++|.++..++..|...+|.....|.
T Consensus 65 ~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~ 102 (211)
T PRK14160 65 KLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEK 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777787777777777777776655543
No 200
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.80 E-value=55 Score=22.65 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
++.++.++++|+.++.++|.|-+-|
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665555554444
No 201
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.78 E-value=73 Score=24.50 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMF-AVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 17 ieQAMDLVKsHLm~-AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
.+.+|+-||+--+| |.--|++++|+++..|++.+..|.-+-
T Consensus 78 ~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 78 AEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665 345566666666666665555554443
No 202
>KOG2010|consensus
Probab=46.60 E-value=23 Score=29.62 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIK------DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 16 ~ieQAM------DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
++.+|| |==|+.||| +||.||.-+.|++++.+.--.||.
T Consensus 127 kykkaMvsnaQLDNEKsnl~Y----qVDtLKD~LeE~eeqLaeS~Re~e 171 (405)
T KOG2010|consen 127 KYKKAMVSNAQLDNEKNNLIY----QVDTLKDVLEEQEEQLAESYRENE 171 (405)
T ss_pred HHHHHHHHHHhhcccccceee----eHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566787 445888998 567788777777776665555553
No 203
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.59 E-value=93 Score=23.77 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVR--------EEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVR--------EEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
++..||=..+.+.-|-+ .++|.||..|.+++.++.....+=.-
T Consensus 7 ~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~ 57 (207)
T PF05546_consen 7 LSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVRE 57 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444 46777777777777766655444333
No 204
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.53 E-value=77 Score=20.44 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.+..+.|.++|++|....+.|+.-...+
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLARLDAFEASL 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555444333
No 205
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.43 E-value=41 Score=25.75 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
+|-.|=-=+.-+||+.||....-|+.|+.+||+.
T Consensus 168 ~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 168 AVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444456799999999999999999999975
No 206
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=46.40 E-value=71 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.510 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|-|-+...+|+.+..+...+.+|.+.+..+-.|+.
T Consensus 100 nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 137 (338)
T TIGR02426 100 QDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHR 137 (338)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48888999999999999999999999999998877764
No 207
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=46.39 E-value=74 Score=22.59 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+++|+..+++.|..+.+++...+..++.|.+.+
T Consensus 10 ~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiA 43 (121)
T PF03310_consen 10 ELIQELKKIESDIKAILEKLQSTEQDQENLESIA 43 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 5677777788888888888777777666665544
No 208
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.37 E-value=66 Score=19.53 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+.+++-++...-. ...+++.|+.+++.+.+++..++...
T Consensus 61 ~~~~~~L~~~~~~-~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 61 EEAIEELEERIEK-LEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443332 34577777777777777777766553
No 209
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=46.33 E-value=72 Score=20.63 Aligned_cols=26 Identities=50% Similarity=0.553 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 38 VLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|...|.+|.++..+++.+-+-++..
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555543
No 210
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.28 E-value=98 Score=21.47 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-.++.+.+++.|++|.+++...|.|...||.-+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888888887543
No 211
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.23 E-value=1.2e+02 Score=22.50 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
|.|=|+-+-.+|-=.|.+--..|++.|++|..++.+||.=-+-
T Consensus 103 VqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~ 145 (171)
T PF04799_consen 103 VQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSK 145 (171)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888889998899999999999999988854333
No 212
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=46.20 E-value=54 Score=22.07 Aligned_cols=45 Identities=20% Similarity=0.031 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCC
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQLP 73 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~ 73 (78)
|||-=+.|+-++..|..|..|.+--.+|++. |++--||++.+||.
T Consensus 5 T~LEDsLr~~~~~a~~~i~~L~aa~~rL~~a---l~~P~sp~qYqq~t 49 (80)
T PRK15366 5 TRLEDLLLHSREEAKGIILQLRAARKQLEEN---NGKLQDPQQYQQNT 49 (80)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHH
Confidence 6788888999999999999999999999875 57888999998875
No 213
>PRK14144 heat shock protein GrpE; Provisional
Probab=46.10 E-value=57 Score=24.39 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
...++++.|++++++|.++...+..|-..+|.....|
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE 85 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMERE 85 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888877777777665544
No 214
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.03 E-value=60 Score=24.35 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
.+++=|+.||.+|..|+.|+.+++..-..|+...+.
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999998888875543
No 215
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=45.99 E-value=43 Score=25.34 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+|-.|++=+=|+|||-|..==+.+...+.+||.
T Consensus 134 lvy~hMSeeER~EaeQLQsLR~avRqElqELE~ 166 (179)
T PF14723_consen 134 LVYRHMSEEEREEAEQLQSLRSAVRQELQELEF 166 (179)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888889999999876555555555555543
No 216
>PRK06390 adenylosuccinate lyase; Provisional
Probab=45.60 E-value=71 Score=25.51 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+-|-+.+++|+.+..|..++..|.+.+..+-.|+.
T Consensus 103 nDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~ 140 (451)
T PRK06390 103 NDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYK 140 (451)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48888999999999999999999999999999887764
No 217
>KOG4005|consensus
Probab=45.57 E-value=1.1e+02 Score=24.72 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.|----=|.-|++..|+++.+..|+.||.+|+.-
T Consensus 79 VAAQtaRDrKKaRm~eme~~i~dL~een~~L~~e 112 (292)
T KOG4005|consen 79 VAAQTARDRKKARMEEMEYEIKDLTEENEILQNE 112 (292)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666777788888888888888888753
No 218
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=45.44 E-value=29 Score=24.45 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE 54 (78)
-|+..||+++.++...|..||
T Consensus 108 sei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 108 SEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 477777888887777777776
No 219
>PRK14154 heat shock protein GrpE; Provisional
Probab=45.31 E-value=31 Score=25.96 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
+++.|+++|.+|++++.+| .+.+||..|.-|
T Consensus 53 ~~~~l~~el~~le~e~~el--kd~~lRl~ADfe 83 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEY--KTQYLRAQAEMD 83 (208)
T ss_pred chhhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4566777777777777755 466666665444
No 220
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.26 E-value=70 Score=22.00 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~L 60 (78)
..|+++++.-+..++.+++||..|
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 221
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=45.07 E-value=60 Score=23.99 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+++...|++++..|...+..|+.++.+..
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~ 138 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITE 138 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999998764
No 222
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.87 E-value=54 Score=21.64 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+++..+.++++.|..++.++..|...||
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 223
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.72 E-value=60 Score=28.78 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
..+..+.|+.+.+++..|+.||+-|+..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~ 444 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRE 444 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777776653
No 224
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=44.45 E-value=86 Score=22.80 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
...|+++.++|.+++.+|+.++.-++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665543
No 225
>PRK14140 heat shock protein GrpE; Provisional
Probab=44.41 E-value=63 Score=23.86 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
|-.++.+.|+.+|.+|.+++..| ++.+||..|.-+
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~el--kd~~lR~~Ae~e 68 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDEL--EERYLRLQADFE 68 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34567888999999999998876 578888877544
No 226
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=44.34 E-value=77 Score=22.83 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.|.+.+|.+|.+..+.+..|+.....-|.-
T Consensus 32 l~~EL~evk~~v~~~I~evD~Le~~er~aR~r 63 (159)
T PF05384_consen 32 LRKELEEVKEEVSEVIEEVDKLEKRERQARQR 63 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888887766653
No 227
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.34 E-value=48 Score=22.94 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~ 55 (78)
|-|..-++..+++.++.+|+.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~ 28 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQ 28 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 228
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=44.32 E-value=80 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-.+.|.++++++++++.+|+.-...|...
T Consensus 77 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 105 (124)
T TIGR02051 77 MYELASRKLKSVQAKMADLLRIERLLEEL 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888887776666543
No 229
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.99 E-value=82 Score=22.16 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+.|+..|+++|+.|.+.+...+.-|..|
T Consensus 122 ~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 230
>PF14282 FlxA: FlxA-like protein
Probab=43.74 E-value=41 Score=22.14 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy8522 38 VLKEKIAELMERINQ 52 (78)
Q Consensus 38 vLKe~I~eL~er~~~ 52 (78)
-|+++|+.|.+++..
T Consensus 23 ~L~~Qi~~Lq~ql~~ 37 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQE 37 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 231
>KOG3335|consensus
Probab=43.60 E-value=78 Score=23.95 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSIL-KANATQ 66 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~L-k~~asp 66 (78)
|.+.|+.++.+|+..+.+++.+.+-| +.+..|
T Consensus 107 e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 107 EIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34444444444444444454444444 334444
No 232
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=43.38 E-value=78 Score=19.50 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8522 46 LMERINQLEMENSILKA 62 (78)
Q Consensus 46 L~er~~~LE~EN~~Lk~ 62 (78)
|.+++..|+.|+.-|+.
T Consensus 70 l~~~~~~l~~~l~~l~~ 86 (91)
T cd04766 70 LEEELAELRAELDELRA 86 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 233
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=43.19 E-value=83 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
||--|+.--|.--..+|++.|++++++|..++..|+.
T Consensus 387 q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~ 423 (439)
T PHA02592 387 YADKLVAMNIYSMTSDEREKLQKEAEELEKEHEYWKK 423 (439)
T ss_pred HHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444454445555689999999999999999998876
No 234
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=42.83 E-value=87 Score=24.36 Aligned_cols=38 Identities=24% Similarity=0.549 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+-|-++.++|+.+..+...+..|.+....+-.|+.
T Consensus 109 nDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~ 146 (351)
T PRK05975 109 QDVIDTSLMLRLKAASEILAARLGALIARLDALEATFG 146 (351)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48888899999999999999999999999998887763
No 235
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=42.54 E-value=65 Score=18.85 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~E 56 (78)
+|.+.+++.+.++.+.+..+-.+
T Consensus 4 ~~Ld~~~~~~~~~~~~l~~~~~~ 26 (92)
T PF05190_consen 4 EELDELREEYEEIEEELEELLEE 26 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888877665544
No 236
>PRK14156 heat shock protein GrpE; Provisional
Probab=42.41 E-value=55 Score=23.91 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
|...+++.|++++.+|.++...+..|-..+|.....|
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE 67 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEE 67 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888877777776666666544433
No 237
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=42.33 E-value=95 Score=24.00 Aligned_cols=37 Identities=16% Similarity=0.517 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+-|-+.+.+|+.+..|...+.+|.+.+..+-.++
T Consensus 90 nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~ 126 (381)
T cd01595 90 QDINDTALALQLRDALDIILPDLDALIDALAKLALEH 126 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888889999999999999999999999998887765
No 238
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.32 E-value=45 Score=22.22 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~ 58 (78)
.-++.+|..|.+.|.||..|-.
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777766644
No 239
>PLN02320 seryl-tRNA synthetase
Probab=42.22 E-value=73 Score=26.83 Aligned_cols=30 Identities=33% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+..+|+..||++|++|+++..+++.+=.-+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888888777776654433
No 240
>KOG4603|consensus
Probab=42.06 E-value=59 Score=25.05 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
||.-+|+..|..|.+++..|..+++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~ 104 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSY 104 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988887765
No 241
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.91 E-value=56 Score=20.44 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=22.5
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy8522 27 HLMFAVREEV-----EVLKEKIAELMERINQLEM 55 (78)
Q Consensus 27 HLm~AVREEV-----EvLKe~I~eL~er~~~LE~ 55 (78)
+||-+++-|. +.++.+|.+-++|..+|..
T Consensus 35 ~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~ 68 (77)
T cd02683 35 LLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKK 68 (77)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776666 5688899999999888864
No 242
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.89 E-value=76 Score=24.76 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.....|.+.-|+-|.+|++.+.+|+.|..-|+.-+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777777888888888888888877776544
No 243
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.74 E-value=44 Score=26.74 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.||+.--|++.+.+|..++..++-+|.+||...++-
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 477888888888888888888999999998865543
No 244
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=41.62 E-value=24 Score=22.07 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMER 49 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er 49 (78)
-++-+++.||-.|+.|+.|
T Consensus 35 ~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 35 DIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3677888899888888753
No 245
>PRK14161 heat shock protein GrpE; Provisional
Probab=41.60 E-value=41 Score=24.40 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+-|+++.++|.+|++++.++ .+.+||..|.-|
T Consensus 18 ~~~~~~~~~ei~~l~~e~~el--kd~~lR~~Aefe 50 (178)
T PRK14161 18 EEIVETANPEITALKAEIEEL--KDKLIRTTAEID 50 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 455788888888888888866 477777766544
No 246
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=41.47 E-value=67 Score=18.19 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.+-.+.++++++++++++.+|+.=-..|
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334577778888888877776543333
No 247
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=41.34 E-value=1e+02 Score=20.29 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
..++.|+++++.+..++.+|+.++.-+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554433
No 248
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=41.12 E-value=25 Score=21.77 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|-||-+++||++.++-|..=|.=|=.
T Consensus 13 ~e~l~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred cchheeeHHHHHHHHHHHHHHhHHHHh
Confidence 466788888888888888877765543
No 249
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.08 E-value=80 Score=22.61 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
..|.|...|..+|..|++.+.+|+.-..-+.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~ 116 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLS 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5688888999999999999999996554443
No 250
>PHA01750 hypothetical protein
Probab=40.99 E-value=1.1e+02 Score=20.43 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIK-DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 16 ~ieQAM-DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+|.|+. |.|| =.|..|.+-|+.+|.++.-|...|++.-.-+|
T Consensus 27 KIKq~lkdAvk----eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 27 KIKQALKDAVK----EIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566664 3333 35667777777777777777666665544333
No 251
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.91 E-value=57 Score=22.22 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE 54 (78)
++.++.+.|.++|.+|+.++..++
T Consensus 109 ~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 109 ELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455777777777777777776654
No 252
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=39.73 E-value=95 Score=19.45 Aligned_cols=31 Identities=42% Similarity=0.594 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
-+.++.++.+|+.|.+....++.+=.-++..
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~ 106 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQ 106 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888777777766655543
No 253
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.70 E-value=91 Score=20.65 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
..+++.+|.+|.++......|+.+..-+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766666665443
No 254
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=39.65 E-value=1e+02 Score=25.22 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
||--++.-=|---.++|++.|++++++|.+++..|+.
T Consensus 390 qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~ 426 (445)
T cd00187 390 QADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEK 426 (445)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556789999999999999999888763
No 255
>PRK14160 heat shock protein GrpE; Provisional
Probab=39.34 E-value=65 Score=24.23 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
..++++.|++++.+|.+++..| .+.+||..|.-+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~el--kd~~lR~~Aefe 92 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEAL--KDRLLRTVAEYD 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3457777777777777777755 467777766543
No 256
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=39.26 E-value=1.2e+02 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=8.4
Q ss_pred CCccccccchHH
Q psy8522 2 SGNVRHNGLILG 13 (78)
Q Consensus 2 ~~~~~~~~~~~~ 13 (78)
+|++-|.|.+-+
T Consensus 115 ~g~~~H~GK~P~ 126 (176)
T COG3880 115 GGYVEHVGKVPK 126 (176)
T ss_pred CCceeecCcCcc
Confidence 466788877665
No 257
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=39.18 E-value=98 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.508 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|-+++++|+..+.|...+..|.+....+-.|+
T Consensus 109 nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~ 145 (452)
T PRK09053 109 QDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARH 145 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3788888999999999999999999999999887776
No 258
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=39.10 E-value=1.1e+02 Score=24.95 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+||--|+.-=|---.++|++.|++++++|.+++..|+.
T Consensus 399 ~q~~~IL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~ 436 (445)
T smart00434 399 EQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEK 436 (445)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555556688999999999999988887763
No 259
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=39.04 E-value=82 Score=23.71 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.+++.|+++++++..+...++.|-.-+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRS 34 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888777777776665553
No 260
>PRK07492 adenylosuccinate lyase; Provisional
Probab=39.03 E-value=94 Score=24.96 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+++.+|+.++.+..++..|.+.+..+-.++
T Consensus 98 ~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~ 134 (435)
T PRK07492 98 SDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEH 134 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3888899999999999999999999999998887665
No 261
>PRK14149 heat shock protein GrpE; Provisional
Probab=38.92 E-value=70 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
+.++.|+.+|++|.++...+..|...+|.....|
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE 76 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERD 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888877777777655544
No 262
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=38.83 E-value=75 Score=20.88 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+..+|=..||++|..|+....++-.+=.+.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 46678888888888877777777666655444
No 263
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=38.71 E-value=1e+02 Score=22.89 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 6 RHNGLILGVIFAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 6 ~~~~~~~~~~~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
..+.++++.+. +++-.| +.-|.=+=|+=+|.--+-|.|+|.|+.+.+..-.
T Consensus 158 ~~r~SvLD~v~-~d~~~L-~~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~~~ 208 (302)
T PF07586_consen 158 ARRKSVLDLVR-EDAKSL-RRRLGAEDRQKLDQYLDSIREIEKRLQQAEAWAD 208 (302)
T ss_pred HhcccHHHHHH-HHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 45677888876 777766 8899999999999999999999999977766543
No 264
>KOG2391|consensus
Probab=38.57 E-value=1.3e+02 Score=25.00 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 20 IKDLVKSHLMFAVREEVEV--------------LKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEv--------------LKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-|.+|..-++++++||++. |++-+++|..-...||++-.-|..++
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3557777788888888864 45555666666777777766666554
No 265
>PRK11239 hypothetical protein; Provisional
Probab=38.48 E-value=64 Score=24.86 Aligned_cols=12 Identities=50% Similarity=0.625 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELM 47 (78)
Q Consensus 36 VEvLKe~I~eL~ 47 (78)
|+.|+.++++|.
T Consensus 192 v~~Le~eva~L~ 203 (215)
T PRK11239 192 VEALEIEVAELK 203 (215)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 266
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=38.37 E-value=1.1e+02 Score=26.66 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
||--++.--|.--.+.|++.|++++++|.+++.+|+.
T Consensus 412 qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~ 448 (800)
T TIGR01063 412 QAQAILDMRLQRLTGLEREKLQEEYKELLELIADLED 448 (800)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556788999999999999888888763
No 267
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.23 E-value=35 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~E 56 (78)
-.+-++.+|+||+.|+..|+.+
T Consensus 56 ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 56 ALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888999999999999997
No 268
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=37.88 E-value=1.2e+02 Score=23.88 Aligned_cols=37 Identities=16% Similarity=0.560 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|=|-+..++|+.+..|..++.+|.+.+..+-.|+
T Consensus 100 nD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~ 136 (437)
T cd01597 100 QDIIDTALVLQLRDALDLLERDLDALLDALARLAATH 136 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888889999999999999999999998887776
No 269
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.73 E-value=1e+02 Score=27.35 Aligned_cols=39 Identities=36% Similarity=0.434 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 24 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 24 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
=|+++.-.++++--.....|..|+.|+.-.|.||+.||-
T Consensus 117 ~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 117 EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777888888888888888888874
No 270
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=37.70 E-value=1.1e+02 Score=23.99 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|-+..++|+.+..|..++.+|.+.+..+-.|+
T Consensus 88 nDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~ 124 (435)
T cd01359 88 NDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEH 124 (435)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888889999999999999999999999999887775
No 271
>PRK14145 heat shock protein GrpE; Provisional
Probab=37.63 E-value=62 Score=24.08 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
.+++.|++++.+|++++..| .+.+||..|.-|
T Consensus 45 ~e~~~l~~~l~~le~e~~el--~d~~lR~~AEfe 76 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEY--LDIAQRLKAEFE 76 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 45777888888888777754 477777766544
No 272
>PRK09039 hypothetical protein; Validated
Probab=37.61 E-value=95 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE 54 (78)
+.|++-||.|++.|+..+..+|
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 273
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=37.58 E-value=86 Score=25.89 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+.-++.+.+.++|.+|.++.++|+.|.+-|+...
T Consensus 90 ~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999999999999999988887653
No 274
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.53 E-value=86 Score=19.96 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.|++++.+|++++.+|+.--+.|...
T Consensus 73 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04789 73 RSLLLERLSSLAEQIARKQQARDLLAAL 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888776666554
No 275
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=37.45 E-value=58 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMER 49 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er 49 (78)
..|+|++-|+++++.++.+
T Consensus 6 ~I~~eIekLqe~lk~~e~k 24 (92)
T PF07820_consen 6 KIREEIEKLQEQLKQAETK 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877654
No 276
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.44 E-value=75 Score=25.44 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
--.|||.-|..+|.+|..|..++=.||.-|.++.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4578999999999999999999999998887764
No 277
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=37.36 E-value=1.2e+02 Score=26.36 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.||--++.--|.--.+.|++.|++.+++|.+++.+|+.
T Consensus 421 ~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~ 458 (742)
T PRK05561 421 IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEA 458 (742)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666677777889999999999999999988874
No 278
>PRK14141 heat shock protein GrpE; Provisional
Probab=37.22 E-value=85 Score=23.54 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
..++++.|++++.+|.++...+..|-..+|...-.|
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE 71 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRD 71 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888877777776666554443
No 279
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=36.96 E-value=42 Score=22.42 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
++++.|+++|++|.++...+..|..-++...
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666655555443
No 280
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.90 E-value=98 Score=20.17 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.++|+..|+.++.+|...+.-|..-..+.+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 5777888888888888888877777666654
No 281
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.89 E-value=1.3e+02 Score=20.13 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 11 ILGVIFAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 11 ~~~~~~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
.+|..+|.+-.+=+++- |.+..|.++.+|+.|+.+...|+
T Consensus 59 ~VG~vlv~qd~~e~~~~----l~~r~E~ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 59 IVGNLLVKVDKTKVEKE----LKERKELLELRSRTLEKQEKKLR 98 (121)
T ss_pred HhhHHHhhccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665554444433 23444445555555554444443
No 282
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=36.64 E-value=1.1e+02 Score=19.93 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-.+..+.++|++|..+++-+|.|+.
T Consensus 86 ~~is~le~~i~~L~qeiAl~e~~~~ 110 (115)
T PF10066_consen 86 VRISRLEEKIKRLAQEIALLEAEEK 110 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456677777777777777766653
No 283
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.41 E-value=55 Score=26.35 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~ 55 (78)
|++.++++|+.|+-.+++||.
T Consensus 164 e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 284
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=36.37 E-value=93 Score=21.09 Aligned_cols=26 Identities=31% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.|.+++.++.+++.+|+..-..|..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T PRK10227 82 RRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777766665553
No 285
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=36.29 E-value=1.2e+02 Score=22.72 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
|.+-|-+...+|+.+..|..++.+|.+....+-.++
T Consensus 82 Di~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~ 117 (325)
T cd01334 82 DIVDTALRLALRDALDILLPALKALIDALAAKAEEH 117 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888999999999999999999999988887665
No 286
>PRK14147 heat shock protein GrpE; Provisional
Probab=36.22 E-value=47 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+.|+.+|.+|.+++..| .+.+||..|
T Consensus 20 ~~~l~~~l~~l~~e~~el--kd~~lR~~A 46 (172)
T PRK14147 20 TDPLKAEVESLRSEIALV--KADALRERA 46 (172)
T ss_pred chhHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 334555555555555543 344444443
No 287
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=36.10 E-value=1.3e+02 Score=23.99 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+=|-++.++|+.+..|..++..|.+.+..+-.|+.
T Consensus 104 nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~ 141 (449)
T PRK08540 104 NDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHK 141 (449)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 48888899999999999999999999999999887763
No 288
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=35.90 E-value=1.1e+02 Score=19.13 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLG 70 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 70 (78)
+-.|.+-....|.+|..+..+++.+=..|-..++.+.+.
T Consensus 28 ~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~ 66 (80)
T PF11488_consen 28 RFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELN 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHh
Confidence 456788888889999999999998888898888887664
No 289
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=35.71 E-value=1.2e+02 Score=21.92 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhC
Q psy8522 28 LMFAVREEVEVLKEK--------IAELMERINQLEMENSILKANA 64 (78)
Q Consensus 28 Lm~AVREEVEvLKe~--------I~eL~er~~~LE~EN~~Lk~~a 64 (78)
-|.-.++||..|++= |..=..++.+|..||.=||...
T Consensus 42 sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~l 86 (181)
T PF05769_consen 42 SMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSL 86 (181)
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 355667888877652 2223456789999999888754
No 290
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.65 E-value=63 Score=20.33 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~ 55 (78)
-.+.|++++.+|++++.+|..
T Consensus 74 ~~~~l~~~~~~l~~~i~~l~~ 94 (96)
T cd04788 74 PLELLRRQLARLEEQLELATR 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888887763
No 291
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=35.64 E-value=1.1e+02 Score=24.77 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+.+.+|+.+ +.+.+++.+|.+....+-.|.
T Consensus 137 nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~ 174 (455)
T cd01362 137 NDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEF 174 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788889999999999 679999999999888887664
No 292
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.60 E-value=44 Score=23.33 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 29 MFAVREEVEVLKEKIAELMERIN 51 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~ 51 (78)
..=-|++.+.|..+|.+|+.|..
T Consensus 68 l~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 68 LLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34468999999999999999875
No 293
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.60 E-value=78 Score=24.69 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQETL 69 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 69 (78)
--|++.+.|++.|..|...+.+|..+-.-.|..+=|+.+
T Consensus 197 ~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvl 235 (258)
T PF15397_consen 197 QFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVL 235 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHh
Confidence 358999999999999999999998876655555555443
No 294
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=35.52 E-value=1.3e+02 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|-|-+++.+|+....+..++.+|.+.+..+-.++.
T Consensus 92 nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 129 (387)
T cd01360 92 SDVVDTALALQLREALDIILKDLKELLEVLKKKALEHK 129 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 37888888999999999999999999999988877653
No 295
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=35.41 E-value=1.2e+02 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|=|-+.+++|+.+..|...+.+|.+....+-.++.
T Consensus 142 nD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~ 179 (473)
T PRK13353 142 NDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFD 179 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37788889999999999999999999999988877763
No 296
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.30 E-value=68 Score=24.40 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
+++.|+++|.+|..++..| .+.+||..|.
T Consensus 68 ~~~~l~~el~~l~~e~~el--kd~~lR~~Ad 96 (238)
T PRK14143 68 RLAQLEQELESLKQELEEL--NSQYMRIAAD 96 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4555555555555555543 3555555443
No 297
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.22 E-value=1.3e+02 Score=19.49 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+++|.+.++..+-. +.+..+.|.+.|..+.+++..++.
T Consensus 85 ~~eA~~~l~~r~~~-l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 85 LEEAIEFLDKKIEE-LTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888777776653 344555555555555555555543
No 298
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=35.05 E-value=1.1e+02 Score=19.52 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~ 55 (78)
|+-+..|.+++.+|+..|+-|..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777666653
No 299
>PRK07380 adenylosuccinate lyase; Provisional
Probab=35.01 E-value=1.2e+02 Score=24.36 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+-|-+++.+|+....+...+.+|.+....+-.|+
T Consensus 95 ~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~ 131 (431)
T PRK07380 95 SDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREH 131 (431)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3788899999999999999999999999999887775
No 300
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=34.98 E-value=1.5e+02 Score=20.47 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 15 IFAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 15 ~~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
++||...|.. +..|.|.+|-+.+..+-|++..|.
T Consensus 40 ~kiE~~~~~l------~qgeqI~kL~e~V~~QGEqIkel~ 73 (102)
T PF01519_consen 40 TKIENKLDQL------AQGEQINKLTEKVDKQGEQIKELQ 73 (102)
T ss_dssp BHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577776644 555555554444444444444443
No 301
>PRK03918 chromosome segregation protein; Provisional
Probab=34.92 E-value=1.2e+02 Score=25.26 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhc
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQETLGQ 71 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 71 (78)
++.+++.++++|.+|..++.+|+.+=.-|+...+++.+.+
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 663 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 4555555666666666666666555555544455544443
No 302
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.85 E-value=38 Score=21.48 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 43 IAELMERINQLEMENSILK 61 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk 61 (78)
++|.++.++.|..||=-||
T Consensus 2 lrEqe~~i~~L~KENF~LK 20 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLK 20 (75)
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 5677888888888886665
No 303
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=34.78 E-value=95 Score=20.73 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+|+.|..++..|..++.+++.+-+-+|.-+
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa 54 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQI 54 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999998888777643
No 304
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.74 E-value=1.1e+02 Score=19.66 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+.|++++.++.+++.+|+.--+.|..
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 83 LAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888776555543
No 305
>PRK14146 heat shock protein GrpE; Provisional
Probab=34.73 E-value=1.1e+02 Score=22.97 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
..+++.|++++.+|.++..++..|-..+|.....|
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE 94 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQE 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888777776666655444
No 306
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.72 E-value=99 Score=18.19 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=23.8
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREE-----VEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 26 sHLm~AVREE-----VEvLKe~I~eL~er~~~LE~E 56 (78)
.|||-|+..| .+.++.++.+..+|..+|...
T Consensus 36 e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~ 71 (77)
T smart00745 36 EYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKS 71 (77)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777555 567899999999999888754
No 307
>PRK14162 heat shock protein GrpE; Provisional
Probab=34.70 E-value=70 Score=23.69 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
|++.|+++|.+|.+++..| .+.+||..|.
T Consensus 40 e~~~l~~~l~~l~~e~~el--kd~~lR~~AE 68 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDL--EDKYLRSQAE 68 (194)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4566666666666666655 3555665544
No 308
>KOG3335|consensus
Probab=34.70 E-value=50 Score=24.97 Aligned_cols=34 Identities=38% Similarity=0.433 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy8522 25 KSHLMFAVREEVEVLKEKIAELMERINQL-EMENSI 59 (78)
Q Consensus 25 KsHLm~AVREEVEvLKe~I~eL~er~~~L-E~EN~~ 59 (78)
+.|+| ..|..|+.|..+|.++..+.++| +..|..
T Consensus 105 ~~e~~-elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 105 KQEIM-ELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34444 67888999999999999999999 555544
No 309
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=34.57 E-value=1.4e+02 Score=19.75 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+.|++++.+|..++.+|+.--+.|..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 81 NALLDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777776665555554
No 310
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.53 E-value=98 Score=27.36 Aligned_cols=41 Identities=32% Similarity=0.395 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+.+++-+.+| |+|+..+|.+=.-|....+.||.||--|.-.
T Consensus 72 ~~~e~~~~~l----r~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 72 EDLELERKRL----REEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556666766 9999999999888888889999998666443
No 311
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=34.32 E-value=56 Score=24.73 Aligned_cols=32 Identities=25% Similarity=0.023 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMERIN 51 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er~~ 51 (78)
++|..|+.+.+|.++|++.-+++..+-.+...
T Consensus 143 d~D~~K~r~~k~~eeElr~A~~kFees~E~a~ 174 (223)
T cd07613 143 DFDYKKKRQGKIPDEELRQALEKFDESKEIAE 174 (223)
T ss_pred hHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999888776655443
No 312
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=34.24 E-value=78 Score=21.48 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhc
Q psy8522 25 KSHLMFAVREEVE----VLKEKIAELMERINQLEMENSILKANATQETLGQ 71 (78)
Q Consensus 25 KsHLm~AVREEVE----vLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q 71 (78)
++-++.+-.+++| .|++++..|+.+...+=.+-+-||..+|....+.
T Consensus 20 ~~~~~~~~~~~~EPfD~~L~~rv~~l~~~~e~~~v~va~lRr~~P~~i~~~ 70 (139)
T PF08641_consen 20 VSLLGQSEAEEYEPFDLELNERVRSLYDQLEDLTVEVAQLRRDYPRKIAEA 70 (139)
T ss_pred HHHcCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444344443 5788888888888888888888888888765543
No 313
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.21 E-value=1.2e+02 Score=18.97 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.-||..|+++..-+..+++..+.+|..|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666665554
No 314
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.08 E-value=1.1e+02 Score=22.34 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
++-...+||.+||+++....+++..++..
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566899999999988888877776654
No 315
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.00 E-value=73 Score=24.67 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~ 55 (78)
-++.++++|.+|+++++.|..
T Consensus 46 ql~r~R~~~~~Le~~l~~L~~ 66 (218)
T COG3159 46 QLARLRNRIRELEEELAALME 66 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999998863
No 316
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.96 E-value=82 Score=26.03 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
...++|++.|.++|.+|++++.+||.+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~ 585 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEK 585 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777777777665
No 317
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=33.64 E-value=1.4e+02 Score=24.11 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+++.+|+.+..+...+.+|.+....+-.+.
T Consensus 137 nD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~ 173 (450)
T cd01357 137 NDVYPTALRLALILLLRKLLDALAALQEAFQAKAREF 173 (450)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888999999999999999999999988887665
No 318
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.51 E-value=1.2e+02 Score=18.85 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+|-..+...|. .|+..--.+..++.+-+.||..|+.|=.-|+.
T Consensus 11 rakQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 11 RAKQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667776 58888888888888888889888888877764
No 319
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.45 E-value=76 Score=23.73 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
+.-=|+||..|.+.++++.+.++--..||.++.
T Consensus 110 k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 110 KKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334478899999999999999999999999875
No 320
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=33.16 E-value=99 Score=20.92 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAE----LMERINQLEM 55 (78)
Q Consensus 34 EEVEvLKe~I~e----L~er~~~LE~ 55 (78)
|-++-||+++.+ -.+.+.+||.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666 5556666554
No 321
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=32.93 E-value=1.5e+02 Score=19.68 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANATQETL 69 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 69 (78)
..|.++..+-+.++.|..+...++.+-.-+-...+|+.+
T Consensus 59 ~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l 97 (150)
T PF07200_consen 59 ELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDAL 97 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 345555555555555555555555555555555555544
No 322
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=32.93 E-value=1.4e+02 Score=19.23 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+.+-.+.|.++|.++.+.+.+|..
T Consensus 83 l~~~~~~l~~~~~~~~~~~~~~~~ 106 (108)
T cd04773 83 LEQRRVALTQRGRAMLDAAAALAA 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666555555543
No 323
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=32.54 E-value=69 Score=20.14 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~ 55 (78)
+=.+.|.+++.++.+++.+|+.
T Consensus 73 ~~~~~l~~~~~~l~~~i~~l~~ 94 (96)
T cd04768 73 ELTAMLLEKKQAIQQKIDRLQQ 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888764
No 324
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.36 E-value=88 Score=22.82 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
-..+.+.|++|+.++.+|+.+...++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888765555
No 325
>PRK14153 heat shock protein GrpE; Provisional
Probab=32.35 E-value=44 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
|++.+..+|.+|.+++.+| ++.+||..|.-|
T Consensus 34 ~~~~~~~ei~~l~~e~~el--kd~~lR~~AEfe 64 (194)
T PRK14153 34 EDSTADSETEKCREEIESL--KEQLFRLAAEFD 64 (194)
T ss_pred hcccchHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3455556666777776654 466666655443
No 326
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.33 E-value=1.2e+02 Score=18.45 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
-|.||.--..|.+.|.+|+.|-.-||++-.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999998643
No 327
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=32.26 E-value=1.2e+02 Score=19.20 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
..+.|.+++.+|++++.+|+.--+.|...
T Consensus 72 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 72 VQAILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887766666543
No 328
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.22 E-value=83 Score=23.76 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
|+-.||.++++|+++++..|.+..-
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556999999999999999887654
No 329
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=32.21 E-value=1.5e+02 Score=23.35 Aligned_cols=38 Identities=26% Similarity=0.601 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+-|-+..++|+....|...+..|.+.+..+-.++.
T Consensus 98 nD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 135 (435)
T TIGR00928 98 NDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYK 135 (435)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47888889999999999999999999999999887763
No 330
>PRK12425 fumarate hydratase; Provisional
Probab=32.03 E-value=1.5e+02 Score=24.23 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|-|=+.+++|+.+ +.|...+..|.+....+-.|+.
T Consensus 139 ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~ 177 (464)
T PRK12425 139 NDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHA 177 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888899999999 6999999999999998887763
No 331
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.95 E-value=87 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
++..++.+++++.+|++-+..-|.-+
T Consensus 44 L~~~l~~ie~~L~DL~~aV~ive~np 69 (97)
T PF09177_consen 44 LRNALQSIEWDLEDLEEAVRIVEKNP 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34445556666666666555544443
No 332
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=31.29 E-value=78 Score=24.01 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+++|+.+.+.|+.|.+.|..|..-..-++.+|
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la 162 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKELAEHVQYLA 162 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777776666555554
No 333
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=31.24 E-value=1.2e+02 Score=18.04 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAEL 46 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL 46 (78)
-||-+|..+.=-||.|+...|+.|-+-
T Consensus 4 dle~~KqEIL~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988664
No 334
>KOG2077|consensus
Probab=31.10 E-value=1.8e+02 Score=26.45 Aligned_cols=44 Identities=34% Similarity=0.410 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAV----------REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 18 eQAMDLVKsHLm~AV----------REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
..|+..||.-|.--| |-|.+--|.---.|++||..||.|-.-+|
T Consensus 317 KNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 317 KNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888998886544 44444333323334444444444444433
No 335
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=31.02 E-value=1.2e+02 Score=20.89 Aligned_cols=28 Identities=14% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.|+++++++++++.+|+.--..|+..
T Consensus 86 ~~ll~~k~~~l~~~i~~L~~~~~~L~~~ 113 (144)
T PRK13752 86 SSLAEHKLKDVREKMADLARMEAVLSEL 113 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877766666553
No 336
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=31.01 E-value=73 Score=24.06 Aligned_cols=30 Identities=27% Similarity=0.048 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSHLMFAVREEVEVLKEKIAELMER 49 (78)
Q Consensus 20 AMDLVKsHLm~AVREEVEvLKe~I~eL~er 49 (78)
++|.+|+.+.++.++|++.-+++..+-.+.
T Consensus 143 d~D~~K~r~~k~~~eE~~~A~~kfees~E~ 172 (223)
T cd07615 143 DFDYKKKRQGKIPDEEIRQAVEKFEESKEL 172 (223)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 578899999999999999888877665443
No 337
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.01 E-value=1.4e+02 Score=18.73 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=26.9
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 12 LG-VIFAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 12 ~~-~~~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
|| ..++|.-.+=...+ +.+-++.|++++.+|.+.+..++.+-+-++..
T Consensus 75 iG~~~~ve~~~~eA~~~----l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 75 LGTGVYVEKSLEEAIEF----LKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred ecCCEEEEecHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 44566555443322 24555666666666666666666666555543
No 338
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=30.99 E-value=70 Score=24.22 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
|-=|||+||+.|.-|. ++|..+|+
T Consensus 153 LR~avRqElqELE~QL---~DRl~~l~ 176 (179)
T PF14723_consen 153 LRSAVRQELQELEFQL---EDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4569999999998774 45555554
No 339
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=30.87 E-value=57 Score=23.48 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERI 50 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~ 50 (78)
-.++++|.+||.+|+.++
T Consensus 4 ~~~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 4 MSALDILEKRIEELERRV 21 (174)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 357899999999999988
No 340
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=1.2e+02 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
..+-..+++.|+++++++.++..++..|=..+|...-.|
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re 76 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERE 76 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447889999999998888887777766666554443
No 341
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.54 E-value=1.3e+02 Score=25.95 Aligned_cols=34 Identities=38% Similarity=0.517 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
++.+|.+.|+.+.+++..|+.+||.+..-|++..
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777766555443
No 342
>PLN02646 argininosuccinate lyase
Probab=30.22 E-value=1.6e+02 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+.+.+|+....|...+.+|.+.+..+-.|+
T Consensus 124 ND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~ 160 (474)
T PLN02646 124 NDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKN 160 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888899999999999999999999999998887776
No 343
>PRK04833 argininosuccinate lyase; Provisional
Probab=29.99 E-value=1.6e+02 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|=|-+.+.+|+.+..+..++..|.+....+-.|+.
T Consensus 110 nD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~ 147 (455)
T PRK04833 110 NDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQ 147 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 37888889999999999999999999999988877663
No 344
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.94 E-value=1.8e+02 Score=21.74 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
+|...++++|+.....++.+|-.+...|..+|.
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~ 40 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKENQ 40 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Confidence 456677777744444444444444444444443
No 345
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=29.90 E-value=72 Score=27.43 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~L 60 (78)
..|.++|.++.+.+..|+.+|..|
T Consensus 366 kcLe~qIn~qf~tIe~Lk~~n~~~ 389 (557)
T PF01763_consen 366 KCLEGQINNQFDTIEDLKEENQDL 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666544
No 346
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.88 E-value=1.6e+02 Score=21.15 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcC
Q psy8522 41 EKIAELMERINQLEMENSILKANATQETLGQL 72 (78)
Q Consensus 41 e~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~ 72 (78)
+++.+|..++.+|+.|-.-++. ..|+.+.++
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~-~Dp~~i~~~ 140 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSE-NDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 3444444444444444443332 456665544
No 347
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=29.79 E-value=1.7e+02 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+.+++|+.+ ..|..++.+|.+.+..+-.++
T Consensus 141 nD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~ 178 (464)
T PRK00485 141 NDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEF 178 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888899999999999 899999999999998887776
No 348
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=29.76 E-value=43 Score=23.79 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8522 25 KSHLMFAVREEVEVL 39 (78)
Q Consensus 25 KsHLm~AVREEVEvL 39 (78)
||||+-|+-.+.-..
T Consensus 47 KTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 47 KTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999887543
No 349
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=29.76 E-value=1.3e+02 Score=19.68 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+.|+++++++.+++.+|+.--..|...
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~l~~~ 108 (127)
T cd01108 82 ALALEHIAELERKIAELQAMRRTLQQL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777776665555543
No 350
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=29.73 E-value=1e+02 Score=20.43 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+.|++++.+|.+++.+|+.=-..|....
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 83 KAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888877666665443
No 351
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.68 E-value=1.4e+02 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
.|+.|+++|.+++.+...++.+-.
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444333
No 352
>KOG4360|consensus
Probab=29.50 E-value=59 Score=28.57 Aligned_cols=31 Identities=39% Similarity=0.466 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.|+=.|-|.++.+.++++|-+|..|..+||+
T Consensus 157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk~ 187 (596)
T KOG4360|consen 157 QRELLEALQEKLKPLEEENTQLRSKAMLLKT 187 (596)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999986
No 353
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.31 E-value=80 Score=19.36 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=24.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 20 IKDLVKSH-LMFAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 20 AMDLVKsH-Lm~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
.+|+++.+ ..-.+|.+|..+.++...+.+|...|+
T Consensus 56 ~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 56 PFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555521 234678888888888888888887775
No 354
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=29.30 E-value=1.3e+02 Score=19.29 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
++++.||.+|+.|..+-.+...+=.=
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHD 27 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHD 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999888887665433
No 355
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=29.23 E-value=2.1e+02 Score=22.77 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCHHHHhcCCC
Q psy8522 26 SHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN--ATQETLGQLPH 74 (78)
Q Consensus 26 sHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~--aspE~l~q~~~ 74 (78)
+|.+.+..+..+.|+.++..|+.++..|+.++.-++.- -..+.+.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555666666666666666666666666665555542 23344444443
No 356
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.22 E-value=1.8e+02 Score=25.24 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+||--++.--|.--.+.|++.|++++++|.+++..|+.
T Consensus 411 ~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~ 448 (738)
T TIGR01061 411 NQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQ 448 (738)
T ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666667789999999999999999988875
No 357
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.12 E-value=1.2e+02 Score=17.58 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=27.3
Q ss_pred HHHHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVK---SHLMFAVREE-----VEVLKEKIAELMERINQLE 54 (78)
Q Consensus 17 ieQAMDLVK---sHLm~AVREE-----VEvLKe~I~eL~er~~~LE 54 (78)
.++|.++=+ .+|+-|++-| -+.|++++.+-++|..+|.
T Consensus 21 ~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk 66 (69)
T PF04212_consen 21 YEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665554 3777787755 4668999999999888775
No 358
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.07 E-value=1.6e+02 Score=18.77 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~E 56 (78)
+-.+.|++++..+..++..|+..
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~ 85 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQ 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544443
No 359
>PRK14150 heat shock protein GrpE; Provisional
Probab=29.07 E-value=97 Score=22.61 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
++++.|++++.++.+ +..+.+||..|.
T Consensus 41 ~~i~~l~~~l~~~~~-----~~kd~~lR~~Ae 67 (193)
T PRK14150 41 ARIAELEAQLAEAQA-----EERDSVLRARAE 67 (193)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 344555555554422 234555555443
No 360
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=29.02 E-value=1.2e+02 Score=18.96 Aligned_cols=15 Identities=53% Similarity=0.587 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy8522 40 KEKIAELMERINQLE 54 (78)
Q Consensus 40 Ke~I~eL~er~~~LE 54 (78)
|++...++.|+..|+
T Consensus 52 ke~q~~le~rI~~Le 66 (74)
T PF03449_consen 52 KERQAFLEARIRELE 66 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 361
>PLN00134 fumarate hydratase; Provisional
Probab=28.99 E-value=1.8e+02 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREE-VEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREE-VEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|=|-+.+++|++ ...|..++.+|.+....+-.|+.
T Consensus 133 nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~ 171 (458)
T PLN00134 133 NDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFK 171 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 377888889999977 77899999999998888877663
No 362
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.92 E-value=77 Score=22.11 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
++|.+..++.+++-.+++.+++.-+.-.+....-++
T Consensus 67 ~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~ 102 (199)
T PF10112_consen 67 DREYEYIREILEEAKEKIRRIEKAIKRIRDLEMIEK 102 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566777788888888888888777665554443333
No 363
>PRK00855 argininosuccinate lyase; Provisional
Probab=28.84 E-value=1.9e+02 Score=23.16 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+=|-+..++|+.+..|..++.+|.+.+..+-.|+
T Consensus 112 nD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~ 148 (459)
T PRK00855 112 NDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEH 148 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888888999999999999999999999998887765
No 364
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=28.79 E-value=1.4e+02 Score=20.21 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.|.+++.++.+++.+|+.=-..|...
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (140)
T PRK09514 83 KGIVDEKLAEVEAKIAELQHMRRSLQRL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776655555443
No 365
>PRK05560 DNA gyrase subunit A; Validated
Probab=28.65 E-value=1.9e+02 Score=25.20 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 19 HIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 19 QAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
||--++.--|.---+.|++.|++++++|.+++.+|+.
T Consensus 415 qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~ 451 (805)
T PRK05560 415 QAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKD 451 (805)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655555555556678888888888888888877764
No 366
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.62 E-value=1.2e+02 Score=27.30 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..+..+..|+.+|++|++++..-++|.++|-.-.
T Consensus 328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SL 361 (739)
T PF07111_consen 328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSL 361 (739)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999985443
No 367
>PRK09039 hypothetical protein; Validated
Probab=28.59 E-value=1.4e+02 Score=23.31 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+-+|.-|+.+|..|..++..||.+=...
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443
No 368
>PTZ00464 SNF-7-like protein; Provisional
Probab=28.59 E-value=1.5e+02 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+-...|++++..|..|+.+|+.|-..+|..+
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888888888888877776443
No 369
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.30 E-value=1.1e+02 Score=27.19 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
|+-..|=-|=..|+..||.||.-||.++
T Consensus 179 e~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 179 EAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566789999999999999875
No 370
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.23 E-value=2.5e+02 Score=20.79 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~E 56 (78)
.+.++++|++|++++...++|
T Consensus 155 ~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 155 REELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344444555555555444443
No 371
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.17 E-value=2e+02 Score=20.66 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.+.-|+.|+.+|.+|+.++..++.--..|
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665544433
No 372
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.17 E-value=1.2e+02 Score=26.22 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.--.|.+.||+++..++++....++++.+|+.-
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566788888888888888888888888764
No 373
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.09 E-value=1.5e+02 Score=19.24 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.|++++.++.+++.+|+.--..|..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T cd04784 82 ALIDEHLAHVRARIAELQALEKQLQA 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777666655555543
No 374
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=27.97 E-value=94 Score=25.57 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=29.2
Q ss_pred ccccccc-hHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy8522 4 NVRHNGL-ILGVI---FAYHIKDLVKSHLMFAVREEVE-VLKEKIAE 45 (78)
Q Consensus 4 ~~~~~~~-~~~~~---~ieQAMDLVKsHLm~AVREEVE-vLKe~I~e 45 (78)
.|.|+++ ++|.+ +..+||.++++. ..++.+||- ++++-++.
T Consensus 248 ~v~~~~~ll~g~~l~~k~~~~~e~l~~~-~~~l~~e~l~~~~~~l~~ 293 (429)
T PF10037_consen 248 AVYQNSPLLWGLVLYGKALDAMELLASI-DLKLCKEVLDLLQEVLEK 293 (429)
T ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHh
Confidence 5778888 68875 689999999998 777766643 44443333
No 375
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=27.93 E-value=1.8e+02 Score=23.53 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
-|.+-|-+++.+|+.+ ++|..++.+|.+....+-.|+
T Consensus 102 nDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~ 139 (425)
T cd01598 102 EDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEY 139 (425)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888889999999998 889999999999998887765
No 376
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=27.86 E-value=85 Score=23.95 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 38 VLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..++.|++|++++.+|+.|-.-..+..
T Consensus 161 ~N~~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 161 ENEENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356889999999999999987666655
No 377
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.81 E-value=1.4e+02 Score=21.63 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 38 VLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 38 vLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.|..+|..|..++..|+..|.-|.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 378
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.79 E-value=1.7e+02 Score=18.76 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+++|.+.++..+-. +.+..+.|.+.|.++.+++.+++.
T Consensus 84 ~~eA~~~l~~~~~~-l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 84 AEEAIEFLKKRIEE-LEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888877664 345666667777777666666654
No 379
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.75 E-value=93 Score=19.58 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~ 55 (78)
.+.|++++.+|.+++.+|+.
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~ 95 (97)
T cd04782 76 IELLKKQEKEIKEEIEELQK 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888877753
No 380
>KOG4643|consensus
Probab=27.68 E-value=1.1e+02 Score=29.02 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANATQET 68 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~ 68 (78)
.|.|-++.+.++++|++.|++|+.++.-|-...+-++
T Consensus 313 m~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 313 MRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 4788899999999999999999999976655554443
No 381
>PRK10455 periplasmic protein; Reviewed
Probab=27.67 E-value=2e+02 Score=20.35 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHhcCC
Q psy8522 50 INQLEMENSILKANATQETLGQLP 73 (78)
Q Consensus 50 ~~~LE~EN~~Lk~~aspE~l~q~~ 73 (78)
+..++..|.++. ..||||-.+|.
T Consensus 117 ~~~~~~~~qiy~-vLTPEQr~q~~ 139 (161)
T PRK10455 117 LAHMETQNKIYN-VLTPEQKKQFN 139 (161)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHH
Confidence 456677777775 88999988764
No 382
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.63 E-value=1.8e+02 Score=19.03 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
+++-.+.|++++.+|..++.+|+.-=..|
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L 106 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAEL 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666665544333
No 383
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.58 E-value=1.3e+02 Score=19.93 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~ 55 (78)
++|.+..+++|...+.++.+|+.
T Consensus 7 ~~e~e~~~~kl~q~e~~~k~L~n 29 (86)
T PF12958_consen 7 QAEIEKAEKKLEQAEHKIKQLEN 29 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 384
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.33 E-value=2.1e+02 Score=20.77 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.++.+.++-.+|..++.+|+.|..-|+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444443
No 385
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.27 E-value=1e+02 Score=21.67 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERIN 51 (78)
Q Consensus 36 VEvLKe~I~eL~er~~ 51 (78)
+|.|+.+|.+|..++.
T Consensus 53 ~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 53 NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 386
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.23 E-value=1.1e+02 Score=22.98 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
+.+.|+++|.+|+.++..| .+.+||..|.-
T Consensus 46 ~~~~l~~~i~~le~e~~el--kdk~lR~~Aef 75 (199)
T PRK14144 46 SYTALEEQLTLAEQKAHEN--WEKSVRALAEL 75 (199)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4455556666666665544 35555555443
No 387
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.10 E-value=1.5e+02 Score=23.35 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
.+..-|+.+.++|.+|++++..++.....
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 34566777777777777777776665443
No 388
>PRK14163 heat shock protein GrpE; Provisional
Probab=27.07 E-value=1e+02 Score=23.35 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
+.|+++|.+|.+++..| .+.+||..|
T Consensus 43 ~~l~~~l~~l~~e~~el--~d~~lR~~A 68 (214)
T PRK14163 43 AGLTAQLDQVRTALGER--TADLQRLQA 68 (214)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 44455555555544433 244444433
No 389
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=26.99 E-value=2e+02 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+...+|+....|..++.+|.+.+..+-.++
T Consensus 110 nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~ 146 (614)
T PRK12308 110 NDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERH 146 (614)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888899999999999999999999999988887765
No 390
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=26.93 E-value=87 Score=21.80 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMER 49 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er 49 (78)
..|+|++-|+++.++++.|
T Consensus 7 ~I~~eI~kLqe~lk~~e~k 25 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETR 25 (98)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888777654
No 391
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=26.92 E-value=1.1e+02 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE 54 (78)
.+|.|.+++||++|+++..+.+
T Consensus 210 ~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 210 EKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888877654
No 392
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=26.90 E-value=1.3e+02 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE 54 (78)
+...+..|..+++.|.++..+++
T Consensus 3 ~g~~l~~l~~~l~~l~~~~~~~~ 25 (70)
T PF10975_consen 3 MGQRLAELEQQLKQLEDQQEELE 25 (70)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888777775
No 393
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.49 E-value=2e+02 Score=20.44 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.++|.|=+.|-....+..+|++.||.=|+=++.+
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3667777777666666666666666666555443
No 394
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=26.40 E-value=2.2e+02 Score=23.09 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
|.|-|-+++..|+.+..+..++.+|.+....+-.|+.
T Consensus 138 D~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~ 174 (450)
T cd01596 138 DFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFA 174 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777888999999999999999999999988877653
No 395
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=26.28 E-value=2.2e+02 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+.+.+|+++..|..++.+|.+....+-.++
T Consensus 144 nD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~ 180 (472)
T PRK12273 144 NDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEF 180 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3777788899999999999999999999888887665
No 396
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=26.26 E-value=1.3e+02 Score=22.86 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
.+.|+..|.+.++++..+++.|...|
T Consensus 12 L~~Ep~~L~~~~~~l~~ql~~La~~~ 37 (338)
T PF04124_consen 12 LFSEPQSLSEEIASLDAQLQSLAFRN 37 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888888888887777766
No 397
>PF13879 KIAA1430: KIAA1430 homologue
Probab=25.96 E-value=72 Score=19.38 Aligned_cols=15 Identities=47% Similarity=0.547 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy8522 47 MERINQLEMENSILK 61 (78)
Q Consensus 47 ~er~~~LE~EN~~Lk 61 (78)
.++..+++.||..|=
T Consensus 35 ~er~~~I~reN~~LL 49 (98)
T PF13879_consen 35 EERQREIERENQILL 49 (98)
T ss_pred HHHHHHHHHHHHHHH
Confidence 377888888888763
No 398
>PF13166 AAA_13: AAA domain
Probab=25.93 E-value=3.6e+02 Score=21.90 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~ 52 (78)
.+.++.+.++.|+..-....++.+...++.+...+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 428 (712)
T PF13166_consen 392 EQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINS 428 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888887766666655444444444433333
No 399
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.70 E-value=1.1e+02 Score=23.38 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 35 EVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 35 EVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.+.+|+++..|-++|+-.||.|+.-.
T Consensus 58 ~~~~L~~~LrEkEErILaLEad~~kW 83 (205)
T PF12240_consen 58 NASNLKELLREKEERILALEADMTKW 83 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888877543
No 400
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=25.67 E-value=81 Score=24.41 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhCCH
Q psy8522 34 EEVEVLKEKIAELMERINQ-------LEMENSILKANATQ 66 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~-------LE~EN~~Lk~~asp 66 (78)
|++..|+.+|.+|.++++. +=.|+++....++|
T Consensus 2 ~~l~~l~~~i~~L~~k~~~~f~~lk~fi~e~~f~~~i~~~ 41 (345)
T PF05075_consen 2 EKLKELEKKIKELSEKMSAHFDDLKAFITENNFYMEIISP 41 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHH
Confidence 5778899999999988765 33455555444433
No 401
>KOG0241|consensus
Probab=25.66 E-value=89 Score=30.18 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIA 44 (78)
Q Consensus 33 REEVEvLKe~I~ 44 (78)
|||||.|++++.
T Consensus 370 ReEve~lr~qL~ 381 (1714)
T KOG0241|consen 370 REEVEKLREQLE 381 (1714)
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
No 402
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.50 E-value=97 Score=22.21 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8522 43 IAELMERINQLEMENSILKA 62 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~ 62 (78)
|.+|+...+.|+.||.-|+.
T Consensus 98 i~~L~nE~n~L~eEN~~L~e 117 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKE 117 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 55555556666666666653
No 403
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.46 E-value=1.8e+02 Score=20.21 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQL 53 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~L 53 (78)
.+|++.||++|++.+..+..|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 404
>PRK10325 heat shock protein GrpE; Provisional
Probab=25.43 E-value=81 Score=23.08 Aligned_cols=8 Identities=38% Similarity=0.692 Sum_probs=3.7
Q ss_pred HHHHHhhC
Q psy8522 57 NSILKANA 64 (78)
Q Consensus 57 N~~Lk~~a 64 (78)
+.+||..|
T Consensus 60 d~~lR~~A 67 (197)
T PRK10325 60 DGILRVKA 67 (197)
T ss_pred HHHHHHHH
Confidence 44454443
No 405
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.42 E-value=1.5e+02 Score=23.37 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
-|||.++-.-....|++++++--.-|...+.+.+..-..||.
T Consensus 110 ~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ 151 (384)
T PF03148_consen 110 IDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRA 151 (384)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777778888888877666666666666655555543
No 406
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.40 E-value=1.3e+02 Score=23.13 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
..|+|.+.|++++.++..+++. .+.+....++
T Consensus 43 ~lr~e~~~l~~~~~~~~~~~~~---~d~f~~~~~~ 74 (308)
T PF11382_consen 43 SLREENDELRAELDALQAQLNA---ADQFIAAVAP 74 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6799999999998888776654 4455555443
No 407
>PRK10698 phage shock protein PspA; Provisional
Probab=25.35 E-value=2.3e+02 Score=20.76 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
+.+.-++.|+.++..|..++.+.+..-..|..
T Consensus 110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 110 LVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888777776666654
No 408
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.35 E-value=1.9e+02 Score=20.49 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
+|.+.+-.......=+.++..|..||.-||.-+.
T Consensus 66 Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 66 LRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 4555555556666667788888889998887654
No 409
>PRK02186 argininosuccinate lyase; Provisional
Probab=25.22 E-value=2.1e+02 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
-|.|-|-+.+.+|+.+..|...+.+|.+.+..+-.++.
T Consensus 517 nD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~ 554 (887)
T PRK02186 517 NDINATTTKLHLREATSRAFDALWRLRRALVFKASANV 554 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 48888999999999999999999999999988877763
No 410
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.10 E-value=1e+02 Score=24.67 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
||.|=...+=|.+|+.+++.|.+++|+.+
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666554
No 411
>KOG0930|consensus
Probab=25.05 E-value=74 Score=26.55 Aligned_cols=23 Identities=48% Similarity=0.742 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~ 55 (78)
-+|++.||+.|+|.++.+.+++.
T Consensus 30 ~deIq~Lk~Ei~ev~~eid~~~~ 52 (395)
T KOG0930|consen 30 LDEIQRLKDEIAEVMEEIDNLES 52 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Confidence 37899999999999999988874
No 412
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=25.05 E-value=1.2e+02 Score=21.07 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~E 56 (78)
..|.--|+++..+|.+++.++..+
T Consensus 51 e~~~qkL~eqteeLK~kvqe~sk~ 74 (106)
T PF12443_consen 51 EQMIQKLGEQTEELKDKVQEFSKR 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356677888888888888887765
No 413
>KOG2397|consensus
Probab=24.98 E-value=1.4e+02 Score=25.63 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENS 58 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~ 58 (78)
++|.|.|.--...++|.++++.|+.|++
T Consensus 341 ~ar~~~de~~~~~k~l~~~i~~l~~~~~ 368 (480)
T KOG2397|consen 341 EARNELDEAERKLKDLDEEIRELEDELN 368 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888888899999999999998875
No 414
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=24.93 E-value=2.3e+02 Score=19.59 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCHHHHhcCCC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSIL-KANATQETLGQLPH 74 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~L-k~~aspE~l~q~~~ 74 (78)
++.++++=.+...+...|+.+.+-+ .-+-+|+.++++.+
T Consensus 64 p~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~~~ev~~~l~~ 103 (133)
T PF09440_consen 64 PAELAEKREEVLAELKELEEETEPVLELLEDPEVVKNLRS 103 (133)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHc
Confidence 4778888888888888888886544 44457788877765
No 415
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=24.91 E-value=2.1e+02 Score=23.39 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+.++.|+....+..++..|.+.+..+-.|+
T Consensus 140 nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~ 176 (468)
T TIGR00839 140 NDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEF 176 (468)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788889999999999999999999999998887665
No 416
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=24.79 E-value=1.6e+02 Score=18.91 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE 54 (78)
+|+.+|...|..|+.++..|.
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666655555543
No 417
>KOG0023|consensus
Probab=24.68 E-value=32 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=20.6
Q ss_pred cccchHHHH-HHHHHHHHHHHHHHHH
Q psy8522 7 HNGLILGVI-FAYHIKDLVKSHLMFA 31 (78)
Q Consensus 7 ~~~~~~~~~-~ieQAMDLVKsHLm~A 31 (78)
-.||++|.. ..+||+|+|..|+-.+
T Consensus 299 I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 299 IKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEeeccccHHHHHHHHHHHHcCCCcC
Confidence 358899988 5999999999997544
No 418
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.65 E-value=1.6e+02 Score=18.87 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~ 55 (78)
.+.|-++...|++|+..||.
T Consensus 44 L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 44 LQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777663
No 419
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=24.54 E-value=1.3e+02 Score=19.69 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE 54 (78)
+..+.++++|.+++.++..|+
T Consensus 8 ~~~~~~~~ki~~ve~~V~~l~ 28 (116)
T PF10552_consen 8 QATEEHNEKIEEVENRVDDLE 28 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667776666665
No 420
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=24.53 E-value=2.4e+02 Score=24.60 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 18 YHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 18 eQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
+||-.++.--|-=-.+-|.+.+++.+++|++++..++.-
T Consensus 388 ~qa~ail~mrl~rlt~~e~~k~~~e~~~l~~~i~~~~~~ 426 (635)
T PRK09631 388 EDIENLLKIPIRRISLFDIDKNQKEIRILNKELKSVEKN 426 (635)
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555555566788888888999998888887754
No 421
>KOG0483|consensus
Probab=24.51 E-value=1.3e+02 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKANAT 65 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~~as 65 (78)
.+-|.||.+...|-..+..|+.|+.-|+....
T Consensus 112 ~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 112 KDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 35678999999999999999999999988765
No 422
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=24.45 E-value=2.4e+02 Score=22.44 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|=|-+..++|+.+..|..++.+|.+.+..+-.++
T Consensus 108 nD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~ 144 (455)
T TIGR00838 108 NDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKH 144 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888999999999999999999999988887776
No 423
>PLN02848 adenylosuccinate lyase
Probab=24.42 E-value=2.4e+02 Score=23.04 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEV-LKEKIAELMERINQLEMENS 58 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEv-LKe~I~eL~er~~~LE~EN~ 58 (78)
-|.+-|-+++..|+.++. |...+..|.+....+..+..
T Consensus 127 qDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~ 165 (458)
T PLN02848 127 EDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFA 165 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488888999999999998 99999999999999887753
No 424
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.42 E-value=2.7e+02 Score=19.95 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.....++..|++.+.+|..++..|+.....+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444443
No 425
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.22 E-value=51 Score=27.92 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 29 MFAVREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 29 m~AVREEVEvLKe~I~eL~er~~~LE~ 55 (78)
+=+.-.|++.||+|..+|.+|++..|.
T Consensus 33 ie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhH
Confidence 334455666666666666666666654
No 426
>PF10271 Tmp39: Putative transmembrane protein; InterPro: IPR019397 This is a family of putative, eukaryote, transmembrane proteins but the function is unknown.
Probab=24.20 E-value=50 Score=27.36 Aligned_cols=13 Identities=62% Similarity=0.677 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEK 42 (78)
Q Consensus 30 ~AVREEVEvLKe~ 42 (78)
-.+|+|||+||.-
T Consensus 213 ~~IR~EV~~Lk~D 225 (423)
T PF10271_consen 213 DQIREEVEVLKMD 225 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3689999999963
No 427
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=24.17 E-value=1.1e+02 Score=22.36 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~ 52 (78)
+|++-+++|+++..+|.+.+..
T Consensus 240 iv~~A~~~l~~k~~~~~~~~~~ 261 (263)
T PRK00783 240 ILLEALKILKRKADELIEALEE 261 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777888888877776654
No 428
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=24.15 E-value=93 Score=23.84 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q psy8522 46 LMERINQLEMENSILKANAT 65 (78)
Q Consensus 46 L~er~~~LE~EN~~Lk~~as 65 (78)
-..|++.||.|-+.||+-..
T Consensus 120 AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIA 139 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35688888899999987544
No 429
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=24.15 E-value=2.6e+02 Score=21.73 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+++.+.|++++++|......++.+-.-|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENEKLERELERLK 42 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666666655555444333
No 430
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=23.99 E-value=3.1e+02 Score=20.48 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=32.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDLVKS----HLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 16 ~ieQAMDLVKs----HLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
..++|-+.|.+ ++|=++|.....+++...++..+ .--+++|
T Consensus 135 ~~eaa~~ii~s~~Gk~lm~~ir~~l~~i~~~e~~~l~~-~~~~q~~ 179 (207)
T COG5278 135 KLEAAVQIISSDQGKVLMDAIRQYLQEIEEEENERLTQ-ALAEQQN 179 (207)
T ss_pred cHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 36788888876 99999999999999999998888 3334444
No 431
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.98 E-value=2.1e+02 Score=18.64 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 37 EVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
+.|.+++.++.+++.+|+.--..|...
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (127)
T TIGR02044 82 ARTLEKVAEIERKISELQSMRDQLEAL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555443
No 432
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=23.96 E-value=1.9e+02 Score=20.57 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 16 FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
..+.|++-+|.-.-. .-+..+.|.+.|.+|..+..+++.++.-+-+
T Consensus 91 ~~~eAie~l~k~~~~-l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 91 SADEAIEFLKKRIEE-LEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777766654432 2233445555666777777777777665533
No 433
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.85 E-value=97 Score=23.31 Aligned_cols=28 Identities=11% Similarity=0.334 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.++++.++.+..+.+.++.....+|.++
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr~~~~~~ 203 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQIKNKVF 203 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4555555555555555555555665554
No 434
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.84 E-value=1.3e+02 Score=22.89 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN 57 (78)
+|+++.+|++.+|+.++..+...+|
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~ 95 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESG 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556666666666665555555544
No 435
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=23.79 E-value=2.3e+02 Score=25.83 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q psy8522 27 HLMFAVREEVEVLKEKIAELMERINQLEMENSILKANATQE 67 (78)
Q Consensus 27 HLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE 67 (78)
--|-+....+..||.+|..-...+..|+.||..||--.+.|
T Consensus 587 kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE 627 (786)
T PF05483_consen 587 KQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAE 627 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888899999999998765554
No 436
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=23.70 E-value=31 Score=25.95 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.2
Q ss_pred cccccchHHHHHHHHHHHHH
Q psy8522 5 VRHNGLILGVIFAYHIKDLV 24 (78)
Q Consensus 5 ~~~~~~~~~~~~ieQAMDLV 24 (78)
++.+|..+|++.+++|+++-
T Consensus 24 Ig~~GeqlGiv~~~eAL~lA 43 (176)
T COG0290 24 IGEDGEQLGIVSIEEALKLA 43 (176)
T ss_pred ECCCCcEEcceeHHHHHHHH
Confidence 57899999999999999764
No 437
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.64 E-value=1.1e+02 Score=26.47 Aligned_cols=23 Identities=17% Similarity=0.567 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~E 56 (78)
.+++.|+.|+..|.+++.+||.+
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888876
No 438
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=23.59 E-value=1.8e+02 Score=23.20 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCCHHHHh
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAEL------MERINQLEMENSILKANATQETLG 70 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL------~er~~~LE~EN~~Lk~~aspE~l~ 70 (78)
.+...|==|.--|..-|..+++.+ ..++.+|+.|-..||.+ ..++++
T Consensus 8 ~l~rALKkAk~fErQKL~krlK~ak~k~~~~~~~~rle~Ei~~lKsl-Dl~~~a 60 (432)
T PF09073_consen 8 KLRRALKKAKGFERQKLSKRLKTAKAKEKDPDKLERLEEEIEALKSL-DLDQFA 60 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHhhhccC-CHHHHH
Confidence 344444445555777888888877 57888899998888865 444443
No 439
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=23.58 E-value=1.8e+02 Score=17.44 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~ 55 (78)
|...++.|-.+..++-.|+..||.
T Consensus 21 v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 21 VTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667788888888888888763
No 440
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.47 E-value=2.2e+02 Score=18.60 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
.+.|++++.++++++.+|+.--..|+...
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 81 DAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877776666543
No 441
>PRK08084 DNA replication initiation factor; Provisional
Probab=23.44 E-value=65 Score=22.95 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q psy8522 25 KSHLMFAVREEVE 37 (78)
Q Consensus 25 KsHLm~AVREEVE 37 (78)
||||+.|+..++.
T Consensus 58 KThLl~a~~~~~~ 70 (235)
T PRK08084 58 RSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 442
>PRK12377 putative replication protein; Provisional
Probab=23.07 E-value=1.6e+02 Score=21.95 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHhhCCHH
Q psy8522 25 KSHLMFAVREEVEVL-----KEKIAELMERINQL----EMENSILKANATQE 67 (78)
Q Consensus 25 KsHLm~AVREEVEvL-----Ke~I~eL~er~~~L----E~EN~~Lk~~aspE 67 (78)
||||+.|+-.++-.- =-...+|...+..- +.+..+++.+...+
T Consensus 114 KThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~d 165 (248)
T PRK12377 114 KNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVD 165 (248)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCC
Confidence 899999998876420 00133444443322 23455666665544
No 443
>KOG4797|consensus
Probab=22.95 E-value=1.5e+02 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~ 55 (78)
.|+-+-.|-++..-|+..|+-|..
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666677777766666653
No 444
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.91 E-value=1.8e+02 Score=22.03 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=7.2
Q ss_pred ccccchHHHHH
Q psy8522 6 RHNGLILGVIF 16 (78)
Q Consensus 6 ~~~~~~~~~~~ 16 (78)
+.+++|+.++.
T Consensus 75 ~~~~siLpIVt 85 (248)
T PF08172_consen 75 GGDSSILPIVT 85 (248)
T ss_pred CCcccHHHHHH
Confidence 45667777773
No 445
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=22.91 E-value=1.1e+02 Score=20.60 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERIN 51 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~ 51 (78)
|-|+-|+|+|.+|+..-.
T Consensus 57 e~v~plreki~dle~Sft 74 (78)
T PF11803_consen 57 EAVAPLREKIRDLEKSFT 74 (78)
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 567889999999886543
No 446
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=22.91 E-value=83 Score=23.25 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy8522 43 IAELMERINQLEMENSILKAN 63 (78)
Q Consensus 43 I~eL~er~~~LE~EN~~Lk~~ 63 (78)
|..|+.++.+|+.|..-||.-
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~ 21 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQ 21 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhC
Confidence 455666666666666666654
No 447
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=22.85 E-value=1.6e+02 Score=20.87 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANATQETL 69 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 69 (78)
++..++.+++...++.+|+.|-.-++..-|-|++
T Consensus 98 ~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e~m 131 (161)
T PF05873_consen 98 IKEAKEFEAESKKRIAELEKELANIESARPFEQM 131 (161)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhC
Confidence 4445667777778888888888888887665554
No 448
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=22.84 E-value=2.4e+02 Score=21.93 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
++..+.|..++..+...+.+++.++..|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 21 ELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445556666666666666666666666655
No 449
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.75 E-value=2.2e+02 Score=18.20 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+.|++++.+|.+++.+|+.--..|..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (123)
T cd04770 81 RALLEEKLAEVEAKIAELQALRAELAG 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655555543
No 450
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=22.62 E-value=2.2e+02 Score=18.16 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
||.||+.|++-.++...-..++.+
T Consensus 2 leelk~~i~~~l~~~~~~~~~~~~ 25 (162)
T PF05698_consen 2 LEELKEKIREELEKQKKQQIEQQK 25 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888887777666655555443
No 451
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.59 E-value=1.9e+02 Score=18.67 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~ 55 (78)
+.++.|-++-..|++|+..||.
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 42 QRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777763
No 452
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=22.55 E-value=1.5e+02 Score=23.59 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEM 55 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~ 55 (78)
.+|++.|++++++++.++..|+.
T Consensus 390 ~~e~~kL~~e~~~l~~ei~~l~~ 412 (426)
T PF00521_consen 390 KEEIEKLQKEIKELEKEIEELEK 412 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888887777777776653
No 453
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.51 E-value=2.1e+02 Score=24.66 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 24 VKSHLMFAVREEVEVLKEKIAELMERINQLEMENSI 59 (78)
Q Consensus 24 VKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~ 59 (78)
.-.|.....-|--|.|..|+....+|+.+||+|..=
T Consensus 292 ~n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 292 ANRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred hhhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666667778899999999999999999998764
No 454
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.30 E-value=2e+02 Score=22.72 Aligned_cols=29 Identities=41% Similarity=0.660 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.||-.++++|.+..+|..+|+.|-+-|..
T Consensus 221 ke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 221 KEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888776654
No 455
>KOG4301|consensus
Probab=22.23 E-value=1.5e+02 Score=25.17 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
|..++.-|++|+++|+.+.+|-.-|+
T Consensus 406 vkq~r~lia~lE~~n~~i~~E~~rl~ 431 (434)
T KOG4301|consen 406 VKQQRQLIAELENKNREILQEIQRLR 431 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678899999999999999977665
No 456
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.22 E-value=1.9e+02 Score=20.46 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~E 56 (78)
-.+++.+++.++++.+++..|+..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~ 75 (151)
T PF14584_consen 52 FDQIDELKEELEELEKRIEELEEK 75 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666544
No 457
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.21 E-value=2e+02 Score=17.58 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
++++..+..++.++..++..+...|..|
T Consensus 83 ~~~l~~~~~~l~~~~~~~~~~n~~N~~l 110 (143)
T PF05130_consen 83 REELQALWRELRELLEELQELNERNQQL 110 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544
No 458
>PRK06705 argininosuccinate lyase; Provisional
Probab=22.18 E-value=2.9e+02 Score=22.75 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 21 KDLVKSHLMFAVREEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 21 MDLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN 57 (78)
-|.|-|-+.+.+|+.+..+.+++.+|.+.+..+-.++
T Consensus 117 nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~ 153 (502)
T PRK06705 117 NDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADH 153 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888899999999999999999999999988887665
No 459
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.17 E-value=2.3e+02 Score=18.43 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+.|++++.++.+++.+|+.--..|..
T Consensus 79 ~~~l~~~~~~l~~~i~~L~~~~~~l~~ 105 (126)
T cd04783 79 RELAEQKLAEVDEKIADLQRMRASLQE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776655555543
No 460
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=22.10 E-value=1.6e+02 Score=20.91 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~E 56 (78)
+.|++.+++++.+|+.++..++..
T Consensus 2 ~~~~~~~e~~~~~l~~~i~~~~~~ 25 (154)
T PF13015_consen 2 EKEIDEAERKLSDLESKIRELEDD 25 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666654
No 461
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.99 E-value=2.2e+02 Score=21.50 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
.||+.++.+++|+.-|+.-.+.=+.|
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~e 189 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQE 189 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777655544444
No 462
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=21.96 E-value=2.7e+02 Score=19.04 Aligned_cols=32 Identities=13% Similarity=0.400 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 17 AYHIKDLVKSHLMFAVREEVEVLKEKIAELMER 49 (78)
Q Consensus 17 ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er 49 (78)
.+|+.|++-.-+.| |++=|+.|..+|...+.+
T Consensus 66 ~~Qvv~~l~RRiDY-V~~Ni~tleKql~~aE~k 97 (99)
T PF13758_consen 66 REQVVDVLSRRIDY-VQQNIETLEKQLEAAENK 97 (99)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 58899888777776 677777777777666554
No 463
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=21.84 E-value=2.4e+02 Score=18.97 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.|+++++++.+++.+|+.--..|...
T Consensus 80 ~~~l~~k~~~i~~~i~~L~~~~~~L~~~ 107 (131)
T cd04786 80 LAALERKVADIEALEARLAQNKAQLLVL 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777776665555443
No 464
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=21.77 E-value=1.4e+02 Score=18.55 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=7.4
Q ss_pred cccccchHHHHHHHHHH
Q psy8522 5 VRHNGLILGVIFAYHIK 21 (78)
Q Consensus 5 ~~~~~~~~~~~~ieQAM 21 (78)
..|++-+-++.+|++-|
T Consensus 57 r~hStV~~a~~ri~~~~ 73 (90)
T cd06571 57 RDHSTVLHAVRKIEELL 73 (90)
T ss_pred CCHhHHHHHHHHHHHHH
Confidence 34444444444444433
No 465
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=21.75 E-value=1.6e+02 Score=16.40 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHh
Q psy8522 39 LKEKIAELMERINQLEMENSILKANATQETLG 70 (78)
Q Consensus 39 LKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~ 70 (78)
|..+|..+..++.++=.+. .+.+|+++.
T Consensus 2 L~~~Ie~~R~~L~~~~~~~----~l~~~~vl~ 29 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKK----GLTDPEVLE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCCHHHHH
Confidence 4455555555555443332 555666553
No 466
>PRK14979 DNA-directed RNA polymerase subunit D; Provisional
Probab=21.74 E-value=1.2e+02 Score=22.43 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE 54 (78)
|+++....|+++...+.++++++|
T Consensus 167 al~~Aa~iL~~~l~~~~~~l~~~~ 190 (195)
T PRK14979 167 ILRSALEILKNKAEKFLQELEGIE 190 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445555555666666655554
No 467
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.73 E-value=3.2e+02 Score=19.80 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 28 LMFAVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 28 Lm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
---.+..++..|..+-.++..+|-++|.+|.-|+.
T Consensus 169 ~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 203 (221)
T PF05700_consen 169 RQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQ 203 (221)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999998888874
No 468
>KOG4343|consensus
Probab=21.72 E-value=90 Score=27.74 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8522 42 KIAELMERINQLEMENSILK 61 (78)
Q Consensus 42 ~I~eL~er~~~LE~EN~~Lk 61 (78)
-..-|+.|+..|+.||..||
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk 322 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLK 322 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555554
No 469
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.71 E-value=1.5e+02 Score=18.69 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8522 36 VEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~E 56 (78)
.+.|++++.++++++.+|+.-
T Consensus 83 ~~~l~~~~~~l~~~i~~l~~~ 103 (107)
T cd04777 83 KSFLKNKKDELEKEIEDLKKA 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887653
No 470
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.69 E-value=3e+02 Score=19.76 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.+..++.|+.+|.++..++..|+.+-...
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 471
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.67 E-value=2.8e+02 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy8522 45 ELMERINQLEMEN 57 (78)
Q Consensus 45 eL~er~~~LE~EN 57 (78)
.|..++.+|..||
T Consensus 141 ~l~~~~~~L~~en 153 (342)
T PF06632_consen 141 RLQAENEHLQKEN 153 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 472
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.62 E-value=1.5e+02 Score=22.94 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN 57 (78)
.+.++.||++|.+|.++..+|=.+|
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~~ 88 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVSN 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677888888888887776654443
No 473
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=21.62 E-value=2.5e+02 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8522 22 DLVKSHLMFAVREEV-EVLKEKIAELMERINQLEMEN 57 (78)
Q Consensus 22 DLVKsHLm~AVREEV-EvLKe~I~eL~er~~~LE~EN 57 (78)
|.|-|=+.+++|+.. +.|.+.+.+|.+.+.++-.|.
T Consensus 139 Div~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~ 175 (458)
T TIGR00979 139 DTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEF 175 (458)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666677788899999 799999999999888887665
No 474
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=21.55 E-value=79 Score=19.14 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy8522 31 AVREEVEVLKEKIAE 45 (78)
Q Consensus 31 AVREEVEvLKe~I~e 45 (78)
.+|+||+.||.++.-
T Consensus 3 ~~~~~ve~Lr~el~~ 17 (63)
T smart00224 3 QLRKEVEQLRKELSR 17 (63)
T ss_pred HHHHHHHHHHHHHCC
Confidence 367888888877653
No 475
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=21.53 E-value=1.9e+02 Score=21.73 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=19.6
Q ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 11 ILGVI--FAYHIKDLVKSHLMFAVREEVEVLKEKIAELMERINQ 52 (78)
Q Consensus 11 ~~~~~--~ieQAMDLVKsHLm~AVREEVEvLKe~I~eL~er~~~ 52 (78)
+-||+ -+-+=.|+|..-+-- .-+|++-|+.+|.+|.+++..
T Consensus 20 ~rGy~~eEVdeFLD~V~~dye~-~l~e~~~l~~~i~~L~~~l~~ 62 (212)
T COG3599 20 FRGYDEEEVDEFLDDVIDDYEQ-LLDENEDLEDEIDELKEELKE 62 (212)
T ss_pred ccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34444 245555655443321 115555555555555555443
No 476
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=21.41 E-value=2.4e+02 Score=19.87 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 37 EVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 37 EvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+.|+.++..+..++..||.+-.-+.
T Consensus 60 ~~l~~~l~~~~~el~~le~~k~~id 84 (180)
T PF04678_consen 60 RQLRKRLEELRQELAPLEKIKQEID 84 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666665554443
No 477
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=21.24 E-value=2.2e+02 Score=17.61 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 31 AVREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 31 AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
.+|.+++.+-.+|-+|..+--++=.+-.-+|.
T Consensus 3 ~lR~~ID~ID~~lv~Ll~~R~~~~~~i~~~K~ 34 (83)
T TIGR01797 3 ALREKISAIDEKLLKLLAERRELAFEVGKSKL 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998888777666666666664
No 478
>KOG1333|consensus
Probab=21.21 E-value=1e+02 Score=24.36 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE~E 56 (78)
=-|-||+|+|+.+|-.|...++++..|
T Consensus 186 ~~~~e~n~~lr~~~~~lq~e~~~~t~~ 212 (241)
T KOG1333|consen 186 NQVQEENEVLRQKLFALQAEIHRLKKE 212 (241)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhhc
Confidence 357899999999999988887777554
No 479
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=21.12 E-value=3e+02 Score=20.31 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHhcCC
Q psy8522 47 MERINQLEMENSILKANATQETLGQLP 73 (78)
Q Consensus 47 ~er~~~LE~EN~~Lk~~aspE~l~q~~ 73 (78)
+.++..++..|.+| ++.+|||=++|.
T Consensus 108 e~~Vem~k~~nqmy-~lLTPEQKaq~~ 133 (166)
T PRK10363 108 ARQVEMAKVRNQMY-RLLTPEQQAVLN 133 (166)
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 34566777778776 578999988774
No 480
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.98 E-value=2.5e+02 Score=20.96 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 32 VREEVEVLKEKIAELMERINQLEME 56 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~E 56 (78)
.+.||..||-+|.++..++.++...
T Consensus 66 lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 66 NQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567777777777777777666543
No 481
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.96 E-value=2.6e+02 Score=19.42 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANATQ 66 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~asp 66 (78)
.-+++.+++.|+.|.++-...+.-..-||.....
T Consensus 53 ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 53 EADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999888888888876543
No 482
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.91 E-value=2.4e+02 Score=17.94 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 34 EEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 34 EEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
+-.+.|.+++.+|.+++.+|+.-=+.|.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777766555444
No 483
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=20.86 E-value=2.3e+02 Score=17.72 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILK 61 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk 61 (78)
.+-++.|++++.+|..++.+|+.-=..|.
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 100 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTID 100 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888899999988888876555443
No 484
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=20.82 E-value=2.7e+02 Score=20.24 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSILKANA 64 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~Lk~~a 64 (78)
..|+..|-+.+.++.+++.+++++...+-+.+
T Consensus 205 ~~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~l 236 (435)
T PRK09467 205 ASEVRSVTRAFNQMAAGIKQLEDDRTLLMAGV 236 (435)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888899999999988888766544333
No 485
>KOG3584|consensus
Probab=20.76 E-value=1.4e+02 Score=24.66 Aligned_cols=36 Identities=36% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 23 LVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 23 LVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
|.|.- =|-||==..-||-||=|+.|+.-||-.|..|
T Consensus 296 LmKNR--EAARECRRKKKEYVKCLENRVAVLENQNKaL 331 (348)
T KOG3584|consen 296 LMKNR--EAARECRRKKKEYVKCLENRVAVLENQNKAL 331 (348)
T ss_pred HHhhH--HHHHHHHHhHhHHHHHHHhHHHHHhcccHHH
Confidence 44443 2555555556666777777777777766543
No 486
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=20.71 E-value=2.4e+02 Score=17.99 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8522 16 FAYHIKDLVKSHLMFAVR 33 (78)
Q Consensus 16 ~ieQAMDLVKsHLm~AVR 33 (78)
.+.+|+...++|+.+...
T Consensus 55 ~~~~Ai~y~r~~l~~~~~ 72 (145)
T PF10607_consen 55 DIMEAIEYARKHLSPFND 72 (145)
T ss_pred hHHHHHHHHHHHhhhhHH
Confidence 466777777777765444
No 487
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=20.68 E-value=1.8e+02 Score=20.89 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHhcCCC
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKANATQETLGQLPH 74 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l~q~~~ 74 (78)
....-..|++|..+..+-|.|-.--...+.+|.|--.++
T Consensus 80 ~~~v~~~Ikel~k~~~~re~E~~e~~~~v~QekL~~~~~ 118 (152)
T PF08644_consen 80 LQEVFRQIKELQKRVKQREQERREKADLVEQEKLILSKN 118 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEccC
Confidence 445567899999999999999988888888888765543
No 488
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.63 E-value=2.5e+02 Score=22.15 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8522 32 VREEVEVLKEKIAELMERINQLEMENSILKA 62 (78)
Q Consensus 32 VREEVEvLKe~I~eL~er~~~LE~EN~~Lk~ 62 (78)
++++.+.|++++.++.+++.+|+..-..|+.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455566666666666666666665444443
No 489
>KOG2991|consensus
Probab=20.58 E-value=1.6e+02 Score=24.17 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q psy8522 29 MFAVREEVE-------VLKEKIAELMERINQLEMENSILKANATQETL 69 (78)
Q Consensus 29 m~AVREEVE-------vLKe~I~eL~er~~~LE~EN~~Lk~~aspE~l 69 (78)
|--.-|+|| +|.++.+|-.+++.+|+.+|..+++.+.++..
T Consensus 266 m~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 266 MEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445566776 57777788888899999999999988877643
No 490
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=20.44 E-value=2.3e+02 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 36 VEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 36 VEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
.+.|++++++|.+++.+|+.--..|...
T Consensus 76 ~~~L~~~~~~l~~ei~~L~~~~~~l~~l 103 (172)
T cd04790 76 TDVLRRRLAELNREIQRLRQQQRAIATL 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776665555544
No 491
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.40 E-value=2.2e+02 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 30 FAVREEVEVLKEKIAELMERINQLE 54 (78)
Q Consensus 30 ~AVREEVEvLKe~I~eL~er~~~LE 54 (78)
+.||+.++..+..+..+...+..||
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554
No 492
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=3.3e+02 Score=20.54 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8522 22 DLVKSHLMFAVREEVEVLKEKIAELMERINQLEMENSILKAN 63 (78)
Q Consensus 22 DLVKsHLm~AVREEVEvLKe~I~eL~er~~~LE~EN~~Lk~~ 63 (78)
|-.+.-+ |+-+.|.+..+..|+++.+++..||.+-.-|+.+
T Consensus 66 da~~dq~-~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~ 106 (192)
T COG3334 66 DAAADQL-YALQKELLEKLKDLAEVNERLKALEKKKAELKDL 106 (192)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 8899999888888889988888888775555543
No 493
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.16 E-value=1.3e+02 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 33 REEVEVLKEKIAELMERINQLEMENSIL 60 (78)
Q Consensus 33 REEVEvLKe~I~eL~er~~~LE~EN~~L 60 (78)
.++++.++.++.+.+.++..+..+|.++
T Consensus 177 ~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 177 VQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3455666666666666666666666554
No 494
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=20.13 E-value=1.6e+02 Score=23.67 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=21.1
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8522 3 GNVRHNGLILGVIFAYHIKDLVKSHLMFAVREEVEVLKEKI 43 (78)
Q Consensus 3 ~~~~~~~~~~~~~~ieQAMDLVKsHLm~AVREEVEvLKe~I 43 (78)
|+-.|.+-+-++.+|++.|+-= =.+|++|+.|+.+|
T Consensus 412 ggrdHsTV~~a~~ki~~~~~~d-----~~~~~~v~~l~~~l 447 (450)
T PRK14087 412 GGRDHTTVINAERKIEKMLKKD-----KQLKKTVDILKNKI 447 (450)
T ss_pred CCCChHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHH
Confidence 4455666666777777766321 14566666666655
Done!